Mass spectrometry and protein analysis

Science

Volumn 312, Issue 5771, 2006, Pages 212-217

  Domon, Bruno ^a   Aebersold, Ruedi ^a,b,c  

^a ETH ZURICH   (Switzerland)

^b UNIVERSITY OF ZURICH   (Switzerland)

^c Institute for System Biology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRIC CURRENTS; MOLECULAR BIOLOGY; NATURAL SCIENCES; PROTEINS; RESEARCH AND DEVELOPMENT MANAGEMENT; SENSITIVITY ANALYSIS;

CENTRAL ANALYTICAL TECHNIQUE; COMPLEX SAMPLES; MASS SPECTROMETRY INSTRUMENTATION;

MASS SPECTROMETRY;

INSTRUMENTATION; MASS SPECTROMETRY; PROTEIN; RESEARCH AND DEVELOPMENT; SENSITIVITY ANALYSIS;

ANALYTIC METHOD; INTERMETHOD COMPARISON; ION TRAP MASS SPECTROMETRY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; PERFORMANCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PROCESSING; PROTEIN STRUCTURE; PROTEIN SYNTHESIS; PROTEOMICS; QUANTITATIVE ANALYSIS; REVIEW; STRUCTURE ANALYSIS; ULTRAVIOLET SPECTROPHOTOMETRY;

MASS SPECTROMETRY; PEPTIDE MAPPING; PROTEINS; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 33645813378     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1124619     Document Type: Review

References (39)

1. N. L. Anderson, N. G. Anderson, Mol. Cell. Proteomics 1, 845 (2002).
2. J. B. Fenn, M. Mann, C. K. Meng, S. F. Wong, C. M. Whitehouse, Science 246, 64 (1989).
3. M. Karas, F. Hillenkamp, Anal. Chem. 60, 2299 (1988).
4. R. Aebersold, D. R. Goodlet, Chem. Rev. 101, 269 (2001).
5. R. Aebersold, R. M. Mann, Nature 422, 198 (2003).
6. Mass accuracy and resolving power are two key characteristics of a mass spectrometer. Resolving power characterizes the ability to separate two ions that are close in mass (and it is defined by the ratio mass/mass difference). Mass accuracy is expressed either in absolute terms (difference between the observed and calculated values) or in relative terms expressed in ppm.
7. K. F. Medzihradszky et al., Anal. Chem. 72, 552 (2000).
8. R. G. Cooks, G. L. Glish, S. A. McLuckey, R. E. Kaiser, Chem. Eng. News 69, 26 (1991).
9. In data (or information)-dependent acquisition, the data system will use information collected on the flight in full scan mode (MS1) to trigger the subsequent MS/MS experiments.
10. J. V. Olsen, M. Mann, Proc. Natl. Acad. Sci. U.S.A. 101, 13417 (2004).
11. J. W. Hager, Rapid Commun. Mass. Spectrom. 16, 512 (2002).
12. M. W. Senko, C. L. Henderickson, M. R. Emmett, S. D. Shi, A. G. Marshall, J. Am. Soc. Mass Spectrom. 8, 970 (1997).
13. M. Hardmanand, A. Makarov, Anal. Chem. 75, 1699 (2003).
14. Q. Hu et al., J. Mass Spectrom. 40, 430 (2005).
15. M. J. Huddleston, M. F. Bean, S. A. Carr, Anal. Biochem. 239, 180 (1996).
16. J. C. Le Blanc et al., Proteomics 3, 859 (2003).
17. M. J. Huddleston, R. J. Annan, M. F. Bean, S. A. Carr, Anal. Chem. 65, 877 (1993).
18. R. A. Zubarev, N. L. Kelleher, F. W. McLafferty, J. Am. Chem. Soc. 120, 3265 (1998).
19. J. E. P. Syka, J. J. Coon, M. J. Schroeder, J. Shabanowitz, D. F. Hunt, Proc. Natl. Acad. Sci. U.S.A. 101, 9528 (2004).
20. N. L. Kelleher, Anal. Chem. 76, 197A (2004).
21. M. A. Baldwin, Mol. Cell. Proteomics 3, 1 (2004).
22. S. Carr et al., Mol. Cell. Proteomics 3, 531 (2004).
23. A. Keller, A. I. Nesvizhskii, E. Kolker, R. Aebersold, Anal. Chem. 74, 5383 (2002).
24. H. Wang et al., Mol. Cell. Proteomics 4, 618 (2005).
25. S. Hu et al., Anal. Chem. 76, 4044 (2004).
26. S. P. Gigy et al., Nat. Biotechnol. 17, 994 (1999).
27. H. Zhou et al., Nat. Biotechnol. 19, 375 (2001).
28. S. Ficarro et al., Nat. Biotechnol. 20, 301 (2002).
29. H. Zhang, X. J. Li, D. B. Martin, R. Aebersold, Nat. Biotechnol. 21, 660 (2003).
30. P. Kearney, P. Thibault, J. Bioinform. Comput. Biol. 1, 183 (2003).
31. X. J. Li et al., Anal. Chem. 76, 3856 (2004).
32. B. Kuster, M. Schirle, P. Mallick, R. Aebersold, Nat. Rev. Mol. Cell Biol. 6, 577 (2005).
33. F. Desiere et al., Genome Biol. 6, R9 (2004).
34. R. D. Smith, G. A. Anderson, M. S. Lipton, Proteomics 2, 513 (2002).
35. S. E. Ong et al., Mol. Cell. Proteomics 1, 376 (2002).
36. X. Yao, A. Freas, J. Ramirez, P. A. Demirev, C. Fenselau, Anal. Chem. 73, 2836 (2001).
37. A. Thompson et al., Anal. Chem. 75, 1895 (2003).
38. P. L. Ross et al., Mol. Cell. Proteomics 3, 1154 (2004).
39. We gratefully acknowledge funding with federal funds from the National Heart, Lung, and Blood Institute of the NIH under contract no. N01-HV-28179.