Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry

Proteomics

Volumn 4, Issue 12, 2004, Pages 3845-3854

  Vasilescu, Julian ^a   Guo, Xuecui ^a   Kast, Juergen ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

Formaldehyde cross linking; Immunoaffinity chromatography; M Ras; Mass spectrometry; Protein protein interactions

Indexed keywords

FORMALDEHYDE; GUANOSINE TRIPHOSPHATASE ACTIVATING PROTEIN; IQ MOTIF CONTAINING GUANOSINE TRIPHOSPHATASE ACTIVATING PROTEIN 1; MYC PROTEIN; RAS PROTEIN;

ANIMAL CELL; ARTICLE; CELL MEMBRANE PERMEABILITY; IMMUNOAFFINITY CHROMATOGRAPHY; IN VIVO STUDY; MASS SPECTROMETRY; MOUSE; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CROSS LINKING; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; TANDEM MASS SPECTROMETRY;

ANIMALS; BLOTTING, WESTERN; CELL LINE; CHROMATOGRAPHY; CHROMATOGRAPHY, LIQUID; CROSS-LINKING REAGENTS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EPITOPES; FORMALDEHYDE; IMMUNOPRECIPITATION; MASS SPECTROMETRY; MICE; MONOMERIC GTP-BINDING PROTEINS; PROTEIN BINDING; PROTEINS; PROTEOMICS; RAC1 GTP-BINDING PROTEIN; RAP1 GTP-BINDING PROTEINS; TIME FACTORS;

ANIMALIA;

EID: 10644254712     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200400856     Document Type: Article

References (36)

1. Beeckmans, S., Methods 1999, 19, 278-305.
2. Burgess, R. R., Thompson, N. E., Curr. Opin. Biotechnol. 2002, 13, 304-308.
3. Kellogg, D. R., Moazed, D., Methods Enzymol. 2002, 351, 172-183.
4. Bauer, A., Kuster, B., Eur. J. Biochem. 2003, 270, 570-578.
5. Gavin, A. C., Bosche, M., Krause, R., Grandi, P. et al.,Nature 2002, 415, 141-147.
6. Ho, Y., Gruhler, A., Heilbut, A., Bader, G. D. et al.,Nature 2002, 415, 180-183.
7. Sali, A., Glaeser, R., Earnest, T., Baumeister, W., Nature 2003, 422, 216-225.
8. Fancy, D. A., Curr. Opin. Chem. Biol. 2000, 4, 28-33.
9. Orlando, V., Strutt, H., Paro, R., Methods 1997, 11, 205-214.
10. Orlando, V., Trends Biochem. Sci. 2000, 3, 99-104.
11. Orlando, V., Paro, R., Cell 1993, 6, 1187-1198.
12. Fragoso, G., Hager, G. L., Methods 1997, 11, 246-252.
13. Jackson, V., Methods 1999, 17, 125-139.
14. Hall, D. B., Struhl, K., J. Biol. Chem. 2002, 277, 46043-46050.
15. Ehrhardt, G. R., Leslie, K. B., Lee, F., Wieler, J. S. et al., Blood 1999, 94, 2433-2444.
16. Ehrhardt, G. R., Korherr, C., Wieler, J. S., Knaus, M. et al., Oncogene 2001, 20, 188-197.
17. Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S. et al., Nature 1996, 379, 466-469.
18. Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Electrophoresis 1999, 20, 3551-3567.
19. Ehrhardt, A., Ehrhardt, G. R., Guo, X., Schrader, J. W., Exp. Hematol. 2002, 30, 1089-1106.
20. Metz, B., Kersten, G. F., Hoogerhout, P., Brugghe, H. F. et al., J. Biol. Chem. 2004, 279, 6235-6243.
21. Briggs, M. W., Sacks, D. B., EMBO Rep. 2003, 4, 571-574.
22. Erickson, J. W., Cerione, R. A., Hart, M. J., J. Biol. Chem. 1997, 272, 24443-24447.
23. Fukata, M., Kuroda, S., Fujii, K., Nakamura, T. et al., J. Biol. Chem. 1997, 272, 29579-29583.
24. Hart, M. J., Callow, M. G., Souza, B., Polakis, P., EMBO J. 1996, 15, 2997-3005.
25. Shevchenko, A., Schafts, D., Roguev, A., Pijnappel, W. W. et al., Mol. Cell. Proteomics 2002, 1, 204-212.
26. Kocks, C., Maehr, R., Overkleeft, H. S., Wang, E. W. et al., Mol. Cell. Proteomics 2003, 2, 1188-1197.
27. Leask, A., Stearns, T., J. Biol. Chem. 1998, 273, 2661-2668.
28. McLeod, S. J., Shum, A. J., Lee, R. L., Takei, F. et al., J. Biol. Chem. 2004, 279, 12009-12019.
29. Rebhun, J. F., Castro, A. F., Quilliam, L. A., J. Biol. Chem. 2000, 275, 34901-34908.
30. Gao, X., Satoh, T., Liao, Y., Song, C. et al., J. Biol. Chem. 2001, 276, 42219-42225.
31. Burridge, K., Wennerberg, K., Cell 2004, 116, 167-179.
32. Weissbach, L., Settleman, J., Kalady, M. F., Snijders, A. J. et al., J. Biol. Chem. 1994, 269, 20517-20521.
33. Bernards, A., Biochim. Biophys. Acta 2003, 1603, 47-82.
34. Bouveret, E., Rigaut, G., Shevchenko, A., Wilm, M. et al., EMBO J. 2000, 19, 1661-1671.
35. Caspary, F., Shevchenko, A., Wilm, M., Seraphin, B., EMBO J. 1999, 18, 3463-3474.
36. Honey, S., Schneider, B. L, Shieltz, D. M., Yates, J. R. et al., Nucleic Acids Res. 2001, 29, E24.