메뉴 건너뛰기




Volumn 46, Issue , 2012, Pages 43-68

Disentangling the many layers of eukaryotic transcriptional regulation

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENHANCEOSOME; EXTRADENTICLE PROTEIN; HOMOTHORAX PROTEIN; HOX PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 84870222914     PISSN: 00664197     EISSN: 15452948     Source Type: Book Series    
DOI: 10.1146/annurev-genet-110711-155437     Document Type: Review
Times cited : (178)

References (185)
  • 1
    • 79957661916 scopus 로고    scopus 로고
    • The MADS box transcription factor MEF2C regulates melanocyte development and is a direct transcriptional target and partner of SOX10
    • Agarwal P, Verzi MP, Nguyen T, Hu J, Ehlers ML, et al. 2011. The MADS box transcription factor MEF2C regulates melanocyte development and is a direct transcriptional target and partner of SOX10. Development 138:2555-65
    • (2011) Development , vol.138 , pp. 2555-2565
    • Agarwal, P.1    Verzi, M.P.2    Nguyen, T.3    Hu, J.4    Ehlers, M.L.5
  • 2
    • 84861167698 scopus 로고    scopus 로고
    • Developmental regulation of chromatin conformation by Hox proteins in Drosophila
    • Agelopoulos M, McKay DJ, Mann RS. 2012. Developmental regulation of chromatin conformation by Hox proteins in Drosophila. Cell Rep. 1(4):350-59
    • (2012) Cell Rep. , vol.1 , Issue.4 , pp. 350-359
    • Agelopoulos, M.1    McKay, D.J.2    Mann, R.S.3
  • 3
    • 17644397256 scopus 로고    scopus 로고
    • Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards
    • Arnosti DN, Kulkarni MM. 2005. Transcriptional enhancers: intelligent enhanceosomes or flexible billboards? J. Cell Biochem. 94:890-98
    • (2005) J. Cell Biochem. , vol.94 , pp. 890-898
    • Arnosti, D.N.1    Kulkarni, M.M.2
  • 4
    • 67649982744 scopus 로고    scopus 로고
    • Diversity and complexity in DNA recognition by transcription factors
    • Badis G, Berger MF, Philippakis AA, Talukder S, Gehrke AR, et al. 2009. Diversity and complexity in DNA recognition by transcription factors. Science 324:1720-23
    • (2009) Science , vol.324 , pp. 1720-1723
    • Badis, G.1    Berger, M.F.2    Philippakis, A.A.3    Talukder, S.4    Gehrke, A.R.5
  • 5
    • 77957883572 scopus 로고    scopus 로고
    • Gene regulation by nucleosome positioning
    • Bai L, Morozov AV. 2010. Gene regulation by nucleosome positioning. Trends Genet. 26:476-83
    • (2010) Trends Genet. , vol.26 , pp. 476-483
    • Bai, L.1    Morozov, A.V.2
  • 6
    • 79955950854 scopus 로고    scopus 로고
    • Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter
    • BaiL, OndrackaA, Cross FR. 2011. Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. Mol. Cell 42:465-76
    • (2011) Mol. Cell , vol.42 , pp. 465-476
    • Bai, L.1    Ondracka, A.2    Cross, F.R.3
  • 7
    • 79952534189 scopus 로고    scopus 로고
    • Regulation of chromatin by histonemodifications
    • Bannister AJ, Kouzarides T. 2011. Regulation of chromatin by histonemodifications. Cell Res. 21:381-95
    • (2011) Cell Res. , vol.21 , pp. 381-395
    • Bannister, A.J.1    Kouzarides, T.2
  • 8
    • 80054080265 scopus 로고    scopus 로고
    • Polycomb group proteins: Repression in 3D
    • Bantignies F, Cavalli G. 2011. Polycomb group proteins: repression in 3D. Trends Genet. 27:454-64
    • (2011) Trends Genet. , vol.27 , pp. 454-464
    • Bantignies, F.1    Cavalli, G.2
  • 9
    • 78651514974 scopus 로고    scopus 로고
    • Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
    • Bantignies F, Roure V, Comet I, Leblanc B, Schuettengruber B, et al. 2011. Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila. Cell 144:214-26
    • (2011) Cell , vol.144 , pp. 214-226
    • Bantignies, F.1    Roure, V.2    Comet, I.3    Leblanc, B.4    Schuettengruber, B.5
  • 10
    • 84855804140 scopus 로고    scopus 로고
    • Shadow enhancers: Frequently asked questions about distributed cis-regulatory information and enhancer redundancy
    • Barolo S. 2012. Shadow enhancers: frequently asked questions about distributed cis-regulatory information and enhancer redundancy. BioEssays 34:135-41
    • (2012) BioEssays , vol.34 , pp. 135-141
    • Barolo, S.1
  • 11
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, et al. 2007. High-resolution profiling of histone methylations in the human genome. Cell 129:823-37
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5
  • 12
    • 78049246250 scopus 로고    scopus 로고
    • Fast signals and slow marks: The dynamics of histone modifications
    • Barth TK, Imhof A. 2010. Fast signals and slow marks: the dynamics of histone modifications. Trends Biochem. Sci. 35:618-26
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 618-626
    • Barth, T.K.1    Imhof, A.2
  • 13
    • 0037218786 scopus 로고    scopus 로고
    • Regulation of tumor necrosis factor alpha gene expression by mycobacteria involves the assembly of a unique enhanceosome dependent on the coactivator proteins CBP/p300
    • Barthel R, Tsytsykova AV, Barczak AK, Tsai EY, Dascher CC, et al. 2003. Regulation of tumor necrosis factor alpha gene expression by mycobacteria involves the assembly of a unique enhanceosome dependent on the coactivator proteins CBP/p300. Mol. Cell. Biol. 23:526-33
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 526-533
    • Barthel, R.1    Tsytsykova, A.V.2    Barczak, A.K.3    Tsai, E.Y.4    Dascher, C.C.5
  • 14
    • 65149105339 scopus 로고    scopus 로고
    • A post-translational modification code for transcription factors: Sorting through a sea of signals
    • Benayoun BA, Veitia RA. 2009. A post-translational modification code for transcription factors: sorting through a sea of signals. Trends Cell Biol. 19:189-97
    • (2009) Trends Cell Biol. , vol.19 , pp. 189-197
    • Benayoun, B.A.1    Veitia, R.A.2
  • 15
    • 45449115390 scopus 로고    scopus 로고
    • Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
    • Berger MF, Badis G, Gehrke AR, Talukder S, Philippakis AA, et al. 2008. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76
    • (2008) Cell , vol.133 , pp. 1266-1276
    • Berger, M.F.1    Badis, G.2    Gehrke, A.R.3    Talukder, S.4    Philippakis, A.A.5
  • 16
    • 76749130545 scopus 로고    scopus 로고
    • Acquisition of SOX transcription factor specificity through protein-protein interaction, modulation ofWnt signalling and post-translational modification
    • Bernard P, Harley VR. 2010. Acquisition of SOX transcription factor specificity through protein-protein interaction, modulation ofWnt signalling and post-translational modification. Int. J. Biochem. Cell Biol. 42:400-10
    • (2010) Int. J. Biochem. Cell Biol. , vol.42 , pp. 400-410
    • Bernard, P.1    Harley, V.R.2
  • 17
    • 79959911826 scopus 로고    scopus 로고
    • Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding
    • Biddie SC, John S, Sabo PJ, Thurman RE, Johnson TA, et al. 2011. Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding. Mol. Cell 43:145-55
    • (2011) Mol. Cell , vol.43 , pp. 145-155
    • Biddie, S.C.1    John, S.2    Sabo, P.J.3    Thurman, R.E.4    Johnson, T.A.5
  • 18
    • 80054728495 scopus 로고    scopus 로고
    • Animal transcription networks as highly connected, quantitative continua
    • Biggin MD. 2011. Animal transcription networks as highly connected, quantitative continua. Dev. Cell 21:611-26
    • (2011) Dev. Cell , vol.21 , pp. 611-626
    • Biggin, M.D.1
  • 19
    • 84856239091 scopus 로고    scopus 로고
    • Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
    • Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, et al. 2012. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat. Genet. 44:148-56
    • (2012) Nat. Genet. , vol.44 , pp. 148-156
    • Bonn, S.1    Zinzen, R.P.2    Girardot, C.3    Gustafson, E.H.4    Perez-Gonzalez, A.5
  • 20
    • 84857321577 scopus 로고    scopus 로고
    • Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity
    • Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, et al. 2012. Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity. Development 139:1164-74
    • (2012) Development , vol.139 , pp. 1164-1174
    • Busser, B.W.1    Shokri, L.2    Jaeger, S.A.3    Gisselbrecht, S.S.4    Singhania, A.5
  • 22
    • 0027191867 scopus 로고
    • The segment identity functions of Ultrabithorax are contained within its homeodomain and carboxy-terminal sequences
    • Chan SK, Mann RS. 1993. The segment identity functions of Ultrabithorax are contained within its homeodomain and carboxy-terminal sequences. Genes Dev. 7:796-811
    • (1993) Genes Dev. , vol.7 , pp. 796-811
    • Chan, S.K.1    Mann, R.S.2
  • 23
    • 0029925624 scopus 로고    scopus 로고
    • An extradenticle-induced conformational change in a HOX protein overcomes an inhibitory function of the conserved hexapeptide motif
    • Chan SK, Popperl H, Krumlauf R, Mann RS. 1996. An extradenticle-induced conformational change in a HOX protein overcomes an inhibitory function of the conserved hexapeptide motif. EMBO J. 15:2476-87
    • (1996) EMBO J. , vol.15 , pp. 2476-2487
    • Chan, S.K.1    Popperl, H.2    Krumlauf, R.3    Mann, R.S.4
  • 24
    • 84934437791 scopus 로고    scopus 로고
    • A review of post-translational modifications and subcellular localization of Ets transcription factors: Possible connection with cancer and involvement in the hypoxic response
    • Charlot C, Dubois-Pot H, Serchov T, Tourrette Y, Wasylyk B. 2010. A review of post-translational modifications and subcellular localization of Ets transcription factors: possible connection with cancer and involvement in the hypoxic response. Methods Mol. Biol. 647:3-30
    • (2010) Methods Mol. Biol. , vol.647 , pp. 3-30
    • Charlot, C.1    Dubois-Pot, H.2    Serchov, T.3    Tourrette, Y.4    Wasylyk, B.5
  • 25
    • 0035799284 scopus 로고    scopus 로고
    • Cooperativity in transcriptional control
    • Courey AJ. 2001. Cooperativity in transcriptional control. Curr. Biol. 11:R250-52
    • (2001) Curr. Biol. , vol.11
    • Courey, A.J.1
  • 26
    • 84855266586 scopus 로고    scopus 로고
    • Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast
    • Dai Z, Dai X. 2012. Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast. Nucleic Acids Res. 40:27-36
    • (2012) Nucleic Acids Res. , vol.40 , pp. 27-36
    • Dai, Z.1    Dai, X.2
  • 27
    • 80052968080 scopus 로고    scopus 로고
    • Regulation of FoxO transcription factors by acetylation and protein-protein interactions
    • Daitoku H, Sakamaki J, Fukamizu A. 2011. Regulation of FoxO transcription factors by acetylation and protein-protein interactions. Biochim. Biophys. Acta 1813:1954-60
    • (2011) Biochim. Biophys. Acta , vol.1813 , pp. 1954-1960
    • Daitoku, H.1    Sakamaki, J.2    Fukamizu, A.3
  • 28
    • 78650362376 scopus 로고    scopus 로고
    • Emerging properties of animal gene regulatory networks
    • Davidson EH. 2010. Emerging properties of animal gene regulatory networks. Nature 468:911-20
    • (2010) Nature , vol.468 , pp. 911-920
    • Davidson, E.H.1
  • 29
    • 58149481232 scopus 로고    scopus 로고
    • Properties of developmental gene regulatory networks
    • Davidson EH, Levine MS. 2008. Properties of developmental gene regulatory networks. Proc. Natl. Acad. Sci. USA 105:20063-66
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 20063-20066
    • Davidson, E.H.1    Levine, M.S.2
  • 30
    • 84855297335 scopus 로고    scopus 로고
    • A decade of 3C technologies: Insights into nuclear organization
    • de Wit E, de Laat W. 2012. A decade of 3C technologies: insights into nuclear organization. Genes Dev. 26:11-24
    • (2012) Genes Dev. , vol.26 , pp. 11-24
    • De Wit, E.1    De Laat, W.2
  • 32
    • 80053013386 scopus 로고    scopus 로고
    • The Pbx interaction motif of Hoxa1 is essential for its oncogenic activity
    • Delval S, Taminiau A, Lamy J, Lallemand C, Gilles C, et al. 2011. The Pbx interaction motif of Hoxa1 is essential for its oncogenic activity. PLoS ONE 6:e25247
    • (2011) PLoS ONE , vol.6
    • Delval, S.1    Taminiau, A.2    Lamy, J.3    Lallemand, C.4    Gilles, C.5
  • 33
    • 84860380106 scopus 로고    scopus 로고
    • Chromosome organization in the nucleus: Charting new territory across the Hi-Cs
    • Dostie J, Bickmore WA. 2012. Chromosome organization in the nucleus: charting new territory across the Hi-Cs. Curr. Opin. Genet. Dev. 22(2):125-31
    • (2012) Curr. Opin. Genet. Dev. , vol.22 , Issue.2 , pp. 125-131
    • Dostie, J.1    Bickmore, W.A.2
  • 34
    • 0026200238 scopus 로고
    • Patterning in the vertebrate limb
    • Duboule D. 1991. Patterning in the vertebrate limb. Curr. Opin. Genet. Dev. 1:211-16
    • (1991) Curr. Opin. Genet. Dev. , vol.1 , pp. 211-216
    • Duboule, D.1
  • 35
    • 0027932522 scopus 로고
    • Colinearity and functional hierarchy among genes of the homeotic complexes
    • Duboule D, Morata G. 1994. Colinearity and functional hierarchy among genes of the homeotic complexes. Trends Genet. 10:358-64
    • (1994) Trends Genet. , vol.10 , pp. 358-364
    • Duboule, D.1    Morata, G.2
  • 36
    • 0036957751 scopus 로고    scopus 로고
    • Transvection effects in Drosophila
    • Duncan IW. 2002. Transvection effects in Drosophila. Annu. Rev. Genet. 36:521-56
    • (2002) Annu. Rev. Genet. , vol.36 , pp. 521-556
    • Duncan, I.W.1
  • 37
    • 80051928360 scopus 로고    scopus 로고
    • Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression
    • Dunipace L, Ozdemir A, Stathopoulos A. 2011. Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression. Development 138:4075-84
    • (2011) Development , vol.138 , pp. 4075-4084
    • Dunipace, L.1    Ozdemir, A.2    Stathopoulos, A.3
  • 38
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington AD, Szostak JW. 1990. In vitro selection of RNA molecules that bind specific ligands. Nature 346:818-22
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 39
    • 74549179119 scopus 로고    scopus 로고
    • Multi-step control ofmuscle diversity by Hox proteins in the Drosophila embryo
    • Enriquez J, BoukhatmiH, Dubois L, Philippakis AA, BulykML, et al. 2010. Multi-step control ofmuscle diversity by Hox proteins in the Drosophila embryo. Development 137:457-66
    • (2010) Development , vol.137 , pp. 457-466
    • Enriquez, J.1    Boukhatmi, H.2    Dubois, L.3    Philippakis, A.A.4    Bulyk, M.L.5
  • 40
    • 81355146972 scopus 로고    scopus 로고
    • Ultrastructural study of transcription factories in mouse erythroblasts
    • Eskiw CH, Fraser P. 2011. Ultrastructural study of transcription factories in mouse erythroblasts. J. Cell Sci. 124:3676-83
    • (2011) J. Cell Sci. , vol.124 , pp. 3676-3683
    • Eskiw, C.H.1    Fraser, P.2
  • 41
    • 84859042891 scopus 로고    scopus 로고
    • Discovering genome regulation with 3C and 3C-related technologies
    • Ethier SD, Miura H, Dostie J. 2011. Discovering genome regulation with 3C and 3C-related technologies. Biochim. Biophys. Acta 1819:401-10
    • (2011) Biochim. Biophys. Acta , vol.1819 , pp. 401-410
    • Ethier, S.D.1    Miura, H.2    Dostie, J.3
  • 42
    • 85015069067 scopus 로고    scopus 로고
    • Controlling the double helix
    • Felsenfeld G, Groudine M. 2003. Controlling the double helix. Nature 421:448-53
    • (2003) Nature , vol.421 , pp. 448-453
    • Felsenfeld, G.1    Groudine, M.2
  • 44
    • 77957776228 scopus 로고    scopus 로고
    • Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
    • Filion GJ, van Bemmel JG, Braunschweig U, Talhout W, Kind J, et al. 2010. Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. Cell 143:212-24
    • (2010) Cell , vol.143 , pp. 212-224
    • Filion, G.J.1    Van Bemmel, J.G.2    Braunschweig, U.3    Talhout, W.4    Kind, J.5
  • 45
    • 13544262343 scopus 로고    scopus 로고
    • HOXB6 overexpression in murine bone marrow immortalizes a myelomonocytic precursor in vitro and causes hematopoietic stem cell expansion and acute myeloid leukemia in vivo
    • Fischback NA, Rozenfeld S, Shen W, Fong S, Chrobak D, et al. 2005. HOXB6 overexpression in murine bone marrow immortalizes a myelomonocytic precursor in vitro and causes hematopoietic stem cell expansion and acute myeloid leukemia in vivo. Blood 105:1456-66
    • (2005) Blood , vol.105 , pp. 1456-1466
    • Fischback, N.A.1    Rozenfeld, S.2    Shen, W.3    Fong, S.4    Chrobak, D.5
  • 46
    • 0035886477 scopus 로고    scopus 로고
    • Highly conserved amino acids in Pax and Ets proteins are required for DNA binding and ternary complex assembly
    • Fitzsimmons D, Lutz R, Wheat W, Chamberlin HM, Hagman J. 2001. Highly conserved amino acids in Pax and Ets proteins are required for DNA binding and ternary complex assembly. Nucleic Acids Res. 29:4154-65
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4154-4165
    • Fitzsimmons, D.1    Lutz, R.2    Wheat, W.3    Chamberlin, H.M.4    Hagman, J.5
  • 47
    • 77951915031 scopus 로고    scopus 로고
    • ARSC/nucleosome complex determines chromatin architecture and facilitates activator binding
    • FloerM, WangX, PrabhuV, BerrozpeG, Narayan S, et al. 2010.ARSC/nucleosome complex determines chromatin architecture and facilitates activator binding. Cell 141:407-18
    • (2010) Cell , vol.141 , pp. 407-418
    • Floer, M.1    Wang, X.2    Prabhu, V.3    Berrozpe, G.4    Narayan, S.5
  • 48
    • 77954960062 scopus 로고    scopus 로고
    • Phenotypic robustness conferred by apparently redundant transcriptional enhancers
    • Frankel N, Davis GK, Vargas D, Wang S, Payre F, Stern DL. 2010. Phenotypic robustness conferred by apparently redundant transcriptional enhancers. Nature 466:490-93
    • (2010) Nature , vol.466 , pp. 490-493
    • Frankel, N.1    Davis, G.K.2    Vargas, D.3    Wang, S.4    Payre, F.5    Stern, D.L.6
  • 49
    • 79955473684 scopus 로고    scopus 로고
    • Operating on chromatin, a colorful language where context matters
    • Gardner KE, Allis CD, Strahl BD. 2011. Operating on chromatin, a colorful language where context matters. J. Mol. Biol. 409:36-46
    • (2011) J. Mol. Biol. , vol.409 , pp. 36-46
    • Gardner, K.E.1    Allis, C.D.2    Strahl, B.D.3
  • 50
    • 0035697276 scopus 로고    scopus 로고
    • Structural studies of Ets-1/Pax5 complex formation on DNA
    • Garvie CW, Hagman J, Wolberger C. 2001. Structural studies of Ets-1/Pax5 complex formation on DNA. Mol. Cell 8:1267-76
    • (2001) Mol. Cell , vol.8 , pp. 1267-1276
    • Garvie, C.W.1    Hagman, J.2    Wolberger, C.3
  • 51
    • 76149132685 scopus 로고    scopus 로고
    • Generic binding sites, generic DNA-binding domains: Where does specific promoter recognition come from
    • Georges AB, Benayoun BA, Caburet S, Veitia RA. 2010. Generic binding sites, generic DNA-binding domains: Where does specific promoter recognition come from? FASEB J. 24:346-56
    • (2010) FASEB J , vol.24 , pp. 346-356
    • Georges, A.B.1    Benayoun, B.A.2    Caburet, S.3    Veitia, R.A.4
  • 52
    • 0025359059 scopus 로고
    • The developmental effect of overexpressing a Ubx product in Drosophila embryos is dependent on its interactions with other homeotic products
    • Gonzalez-Reyes A, Morata G. 1990. The developmental effect of overexpressing a Ubx product in Drosophila embryos is dependent on its interactions with other homeotic products. Cell 61:515-22
    • (1990) Cell , vol.61 , pp. 515-522
    • Gonzalez-Reyes, A.1    Morata, G.2
  • 53
    • 0025165214 scopus 로고
    • Are cross-regulatory interactions between homoeotic genes functionally significant
    • Gonzalez-Reyes A, UrquiaN, Gehring WJ, StruhlG, MorataG. 1990. Are cross-regulatory interactions between homoeotic genes functionally significant? Nature 344:78-80
    • (1990) Nature , vol.344 , pp. 78-80
    • Gonzalez-Reyes, A.1    Urquia, N.2    Gehring, W.J.3    Struhl, G.4    Morata, G.5
  • 54
    • 70350731108 scopus 로고    scopus 로고
    • Distinguishing direct versus indirect transcription factor- DNA interactions
    • Gordan R, Hartemink AJ, Bulyk ML. 2009. Distinguishing direct versus indirect transcription factor- DNA interactions. Genome Res. 19:2090-100
    • (2009) Genome Res. , vol.19 , pp. 2090-2100
    • Gordan, R.1    Hartemink, A.J.2    Bulyk, M.L.3
  • 55
    • 78049440475 scopus 로고    scopus 로고
    • Chromatin landscape dictates HSF binding to target DNA elements
    • Guertin MJ, Lis JT. 2010. Chromatin landscape dictates HSF binding to target DNA elements. PLoS Genet. 6:e1001114
    • (2010) PLoS Genet. , vol.6
    • Guertin, M.J.1    Lis, J.T.2
  • 56
    • 79955569948 scopus 로고    scopus 로고
    • Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements
    • Hakim O, Sung MH, Voss TC, Splinter E, John S, et al. 2011. Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements. Genome Res. 21:697-706
    • (2011) Genome Res. , vol.21 , pp. 697-706
    • Hakim, O.1    Sung, M.H.2    Voss, T.C.3    Splinter, E.4    John, S.5
  • 57
    • 80055073174 scopus 로고    scopus 로고
    • Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition
    • Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB. 2011. Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition. PLoS Genet. 7:e1002266
    • (2011) PLoS Genet. , vol.7
    • Harrison, M.M.1    Li, X.Y.2    Kaplan, T.3    Botchan, M.R.4    Eisen, M.B.5
  • 58
    • 77950262538 scopus 로고    scopus 로고
    • Nucleosome dynamics define transcriptional enhancers
    • He HH, Meyer CA, ShinH, Bailey ST, Wei G, et al. 2010. Nucleosome dynamics define transcriptional enhancers. Nat. Genet. 42:343-47
    • (2010) Nat. Genet. , vol.42 , pp. 343-347
    • He, H.H.1    Meyer, C.A.2    Shinh3    Bailey, S.T.4    Wei, G.5
  • 59
    • 79955471381 scopus 로고    scopus 로고
    • High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species
    • He Q, Bardet AF, Patton B, Purvis J, Johnston J, et al. 2011. High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species. Nat. Genet. 43:414-20
    • (2011) Nat. Genet. , vol.43 , pp. 414-420
    • He, Q.1    Bardet, A.F.2    Patton, B.3    Purvis, J.4    Johnston, J.5
  • 60
    • 33847334699 scopus 로고    scopus 로고
    • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
    • Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, et al. 2007. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39:311-18
    • (2007) Nat. Genet. , vol.39 , pp. 311-318
    • Heintzman, N.D.1    Stuart, R.K.2    Hon, G.3    Fu, Y.4    Ching, C.W.5
  • 61
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineagedetermining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, et al. 2010. Simple combinations of lineagedetermining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38:576-89
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5
  • 62
    • 79953765128 scopus 로고    scopus 로고
    • Multiple sequence-specific DNAbinding proteins mediate estrogen receptor signaling through a tethering pathway
    • Heldring N, Isaacs GD, Diehl AG, Sun M, Cheung E, et al. 2011. Multiple sequence-specific DNAbinding proteins mediate estrogen receptor signaling through a tethering pathway. Mol. Endocrinol. 25:564-74
    • (2011) Mol. Endocrinol. , vol.25 , pp. 564-574
    • Heldring, N.1    Isaacs, G.D.2    Diehl, A.G.3    Sun, M.4    Cheung, E.5
  • 63
    • 79959466181 scopus 로고    scopus 로고
    • Genomic and biochemical insights into the specificity of ETS transcription factors
    • Hollenhorst PC, McIntosh LP, Graves BJ. 2011. Genomic and biochemical insights into the specificity of ETS transcription factors. Annu. Rev. Biochem. 80:437-71
    • (2011) Annu. Rev. Biochem. , vol.80 , pp. 437-471
    • Hollenhorst, P.C.1    McIntosh, L.P.2    Graves, B.J.3
  • 64
    • 51149097760 scopus 로고    scopus 로고
    • Shadow enhancers as a source of evolutionary novelty
    • Hong JW, Hendrix DA, Levine MS. 2008. Shadow enhancers as a source of evolutionary novelty. Science 321:1314
    • (2008) Science , vol.321 , pp. 1314
    • Hong, J.W.1    Hendrix, D.A.2    Levine, M.S.3
  • 65
    • 0036861959 scopus 로고    scopus 로고
    • Hox genes and the evolution of the arthropod body plan
    • Hughes CL, Kaufman TC. 2002. Hox genes and the evolution of the arthropod body plan. Evol. Dev. 4: 459-99
    • (2002) Evol. Dev. , vol.4 , pp. 459-499
    • Hughes, C.L.1    Kaufman, T.C.2
  • 66
    • 17044396348 scopus 로고    scopus 로고
    • Logic functions of the genomic cis-regulatory code
    • Istrail S, Davidson EH. 2005. Logic functions of the genomic cis-regulatory code. Proc. Natl. Acad. Sci. USA 102:4954-59
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 4954-4959
    • Istrail, S.1    Davidson, E.H.2
  • 67
    • 84861379650 scopus 로고    scopus 로고
    • Distal chromatin structure influences local nucleosome positions and gene expression
    • Jansen A, van der Zande E, MeertW, Fink GR, Verstrepen KJ. 2012. Distal chromatin structure influences local nucleosome positions and gene expression. Nucleic Acids Res. 40(9):3870-85
    • (2012) Nucleic Acids Res. , vol.40 , Issue.9 , pp. 3870-3885
    • Jansen, A.1    Van Der Zande, E.2    Meert, W.3    Fink, G.R.4    Verstrepen, K.J.5
  • 68
    • 79957592228 scopus 로고    scopus 로고
    • Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA
    • Jauch R, Aksoy I, Hutchins AP, Ng CK, Tian XF, et al. 2011. Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA. Stem Cells 29:940-51
    • (2011) Stem Cells , vol.29 , pp. 940-951
    • Jauch, R.1    Aksoy, I.2    Hutchins, A.P.3    Ng, C.K.4    Tian, X.F.5
  • 69
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T, Allis CD. 2001. Translating the histone code. Science 293:1074-80
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 70
    • 79952184341 scopus 로고    scopus 로고
    • Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
    • John S, Sabo PJ, Thurman RE, SungMH, Biddie SC, et al. 2011. Chromatin accessibility pre-determines glucocorticoid receptor binding patterns. Nat. Genet. 43:264-68
    • (2011) Nat. Genet. , vol.43 , pp. 264-268
    • John, S.1    Sabo, P.J.2    Thurman, R.E.3    Sung, M.H.4    Biddie, S.C.5
  • 71
    • 79957823841 scopus 로고    scopus 로고
    • Fast, three-dimensional super-resolution imaging of live cells
    • Jones SA, Shim SH, He J, Zhuang X. 2011. Fast, three-dimensional super-resolution imaging of live cells. Nat. Methods 8:499-508
    • (2011) Nat. Methods , vol.8 , pp. 499-508
    • Jones, S.A.1    Shim, S.H.2    He, J.3    Zhuang, X.4
  • 72
    • 78650638953 scopus 로고    scopus 로고
    • Integrative model of genomic factors for determining binding site selection by estrogen receptor-α
    • Joseph R, Orlov YL, Huss M, Sun W, Kong SL, et al. 2010. Integrative model of genomic factors for determining binding site selection by estrogen receptor-α. Mol. Syst. Biol. 6:456
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 456
    • Joseph, R.1    Orlov, Y.L.2    Huss, M.3    Sun, W.4    Kong, S.L.5
  • 73
    • 35548931586 scopus 로고    scopus 로고
    • Functional specificity of a Hox protein mediated by the recognition of minor groove structure
    • Joshi R, Passner JM, Rohs R, Jain R, Sosinsky A, et al. 2007. Functional specificity of a Hox protein mediated by the recognition of minor groove structure. Cell 131:530-43
    • (2007) Cell , vol.131 , pp. 530-543
    • Joshi, R.1    Passner, J.M.2    Rohs, R.3    Jain, R.4    Sosinsky, A.5
  • 74
    • 77954854598 scopus 로고    scopus 로고
    • Dissecting the functional specificities of two Hox proteins
    • Joshi R, Sun L, Mann R. 2010. Dissecting the functional specificities of two Hox proteins. Genes Dev. 24:1533-45
    • (2010) Genes Dev. , vol.24 , pp. 1533-1545
    • Joshi, R.1    Sun, L.2    Mann, R.3
  • 75
    • 84856704764 scopus 로고    scopus 로고
    • A transcription factor collective defines cardiac cell fate and reflects lineage history
    • Junion G, Spivakov M, Girardot C, BraunM, Gustafson EH, et al. 2012. A transcription factor collective defines cardiac cell fate and reflects lineage history. Cell 148:473-86
    • (2012) Cell , vol.148 , pp. 473-486
    • Junion, G.1    Spivakov, M.2    Girardot, C.3    Braun, M.4    Gustafson, E.H.5
  • 76
    • 78650576256 scopus 로고    scopus 로고
    • Contribution of histone sequence preferences to nucleosome organization: Proposed definitions and methodology
    • Kaplan N, Hughes TR, Lieb JD, Widom J, Segal E. 2010. Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology. Genome Biol. 11:140
    • (2010) Genome Biol. , vol.11 , pp. 140
    • Kaplan, N.1    Hughes, T.R.2    Lieb, J.D.3    Widom, J.4    Segal, E.5
  • 77
    • 77955410104 scopus 로고    scopus 로고
    • Nucleosome sequence preferences influence in vivo nucleosome organization
    • author reply, 920-22
    • Kaplan N, Moore I, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, et al. 2010. Nucleosome sequence preferences influence in vivo nucleosome organization. Nat. Struct. Mol. Biol. 17(8):918-20; author reply, 920-22
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , Issue.8 , pp. 918-920
    • Kaplan, N.1    Moore, I.2    Fondufe-Mittendorf, Y.3    Gossett, A.J.4    Tillo, D.5
  • 79
    • 79952273012 scopus 로고    scopus 로고
    • Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development
    • Kaplan T, Li XY, Sabo PJ, Thomas S, Stamatoyannopoulos JA, et al. 2011. Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development. PLoS Genet. 7:e1001290
    • (2011) PLoS Genet. , vol.7
    • Kaplan, T.1    Li, X.Y.2    Sabo, P.J.3    Thomas, S.4    Stamatoyannopoulos, J.A.5
  • 80
  • 81
    • 77953132064 scopus 로고    scopus 로고
    • A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites
    • Khoueiry P, Rothbacher U, Ohtsuka Y, Daian F, Frangulian E, et al. 2010. A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20:792-802
    • (2010) Curr. Biol. , vol.20 , pp. 792-802
    • Khoueiry, P.1    Rothbacher, U.2    Ohtsuka, Y.3    Daian, F.4    Frangulian, E.5
  • 82
    • 0035817740 scopus 로고    scopus 로고
    • HoxB8 requires its Pbx-interactionmotif to block differentiation of primary myeloid progenitors and of most cell line models of myeloid differentiation
    • Knoepfler PS, Sykes DB, Pasillas M, KampsMP. 2001. HoxB8 requires its Pbx-interactionmotif to block differentiation of primary myeloid progenitors and of most cell line models of myeloid differentiation. Oncogene 20:5440-48
    • (2001) Oncogene , vol.20 , pp. 5440-5448
    • Knoepfler, P.S.1    Sykes, D.B.2    Pasillas, M.3    Kamps, M.P.4
  • 83
    • 76549093805 scopus 로고    scopus 로고
    • SOX-partner code for cell specification: Regulatory target selection and underlying molecular mechanisms
    • Kondoh H, Kamachi Y. 2010. SOX-partner code for cell specification: regulatory target selection and underlying molecular mechanisms. Int. J. Biochem. Cell Biol. 42:391-99
    • (2010) Int. J. Biochem. Cell Biol. , vol.42 , pp. 391-399
    • Kondoh, H.1    Kamachi, Y.2
  • 84
    • 84860379799 scopus 로고    scopus 로고
    • Enhancer and promoter interactions: Long distance calls
    • Krivega I, Dean A. 2011. Enhancer and promoter interactions: long distance calls. Curr. Opin. Genet. Dev. 22(2):79-85
    • (2011) Curr. Opin. Genet. Dev. , vol.22 , Issue.2 , pp. 79-85
    • Krivega, I.1    Dean, A.2
  • 85
    • 0347765651 scopus 로고    scopus 로고
    • Information display by transcriptional enhancers
    • Kulkarni MM, Arnosti DN. 2003. Information display by transcriptional enhancers. Development 130:6569-75
    • (2003) Development , vol.130 , pp. 6569-6575
    • Kulkarni, M.M.1    Arnosti, D.N.2
  • 86
    • 77956153243 scopus 로고    scopus 로고
    • The language of histone crosstalk
    • Lee JS, Smith E, Shilatifard A. 2010. The language of histone crosstalk. Cell 142:682-85
    • (2010) Cell , vol.142 , pp. 682-685
    • Lee, J.S.1    Smith, E.2    Shilatifard, A.3
  • 87
    • 84855496550 scopus 로고    scopus 로고
    • Variable motif utilization in homeotic selector (Hox)-cofactor complex formation controls specificity
    • Lelli KM, Noro B, Mann RS. 2011. Variable motif utilization in homeotic selector (Hox)-cofactor complex formation controls specificity. Proc. Natl. Acad. Sci. USA 108:21122-27
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 21122-21127
    • Lelli, K.M.1    Noro, B.2    Mann, R.S.3
  • 88
    • 79953163378 scopus 로고    scopus 로고
    • Chromatin higher-order structures and gene regulation
    • Li G, Reinberg D. 2011. Chromatin higher-order structures and gene regulation. Curr. Opin. Genet. Dev. 21:175-86
    • (2011) Curr. Opin. Genet. Dev. , vol.21 , pp. 175-186
    • Li, G.1    Reinberg, D.2
  • 89
    • 84862908850 scopus 로고    scopus 로고
    • Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
    • Li G, Ruan X, Auerbach RK, Sandhu KS, ZhengM, et al. 2012. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 148:84-98
    • (2012) Cell , vol.148 , pp. 84-98
    • Li, G.1    Ruan, X.2    Auerbach, R.K.3    Sandhu, K.S.4    Zheng, M.5
  • 90
    • 40149095913 scopus 로고    scopus 로고
    • Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
    • Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, et al. 2008. Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol. 6:e27
    • (2008) PLoS Biol. , vol.6
    • Li, X.Y.1    MacArthur, S.2    Bourgon, R.3    Nix, D.4    Pollard, D.A.5
  • 91
    • 79953709415 scopus 로고    scopus 로고
    • The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
    • Li XY, Thomas S, Sabo PJ, EisenMB, Stamatoyannopoulos JA, BigginMD. 2011. The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding. Genome Biol. 12:R34
    • (2011) Genome Biol. , vol.12
    • Li, X.Y.1    Thomas, S.2    Sabo, P.J.3    Eisen, M.B.4    Stamatoyannopoulos, J.A.5    Biggin, M.D.6
  • 92
    • 56749183626 scopus 로고    scopus 로고
    • The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila
    • LiangHL, Nien CY, Liu HY, Metzstein MM, KirovN, Rushlow C. 2008. The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila. Nature 456:400-3
    • (2008) Nature , vol.456 , pp. 400-403
    • Liang, H.L.1    Nien, C.Y.2    Liu, H.Y.3    Metzstein, M.M.4    Kirov, N.5    Rushlow, C.6
  • 93
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, et al. 2009. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326:289-93
    • (2009) Science , vol.326 , pp. 289-293
    • Lieberman-Aiden, E.1    Van Berkum, N.L.2    Williams, L.3    Imakaev, M.4    Ragoczy, T.5
  • 95
    • 0037178777 scopus 로고    scopus 로고
    • Modifying gene expression programs by altering core promoter chromatin architecture
    • Lomvardas S, Thanos D. 2002. Modifying gene expression programs by altering core promoter chromatin architecture. Cell 110:261-71
    • (2002) Cell , vol.110 , pp. 261-271
    • Lomvardas, S.1    Thanos, D.2
  • 96
    • 81755177824 scopus 로고    scopus 로고
    • Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness
    • Ludwig MZ, Manu, Kittler R, White KP, Kreitman M. 2011. Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness. PLoS Genet. 7:e1002364
    • (2011) PLoS Genet. , vol.7
    • Ludwig, M.Z.1    Manu2    Kittler, R.3    White, K.P.4    Kreitman, M.5
  • 98
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 ̊a resolution
    • Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ. 1997. Crystal structure of the nucleosome core particle at 2.8 ̊A resolution. Nature 389:251-60
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 99
    • 40849085514 scopus 로고    scopus 로고
    • FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
    • Lupien M, Eeckhoute J, Meyer CA, WangQ, Zhang Y, et al. 2008. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 132:958-70
    • (2008) Cell , vol.132 , pp. 958-970
    • Lupien, M.1    Eeckhoute, J.2    Meyer, C.A.3    Wang, Q.4    Zhang, Y.5
  • 100
    • 68849103482 scopus 로고    scopus 로고
    • Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
    • MacArthur S, Li XY, Li J, Brown JB, Chu HC, et al. 2009. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biol. 10:R80
    • (2009) Genome Biol. , vol.10
    • MacArthur, S.1    Li, X.Y.2    Li, J.3    Brown, J.B.4    Chu, H.C.5
  • 101
    • 79953044960 scopus 로고    scopus 로고
    • Genome-wide transcription factor binding: Beyond direct target regulation
    • MacQuarrie KL, Fong AP, Morse RH, Tapscott SJ. 2011. Genome-wide transcription factor binding: beyond direct target regulation. Trends Genet. 27:141-48
    • (2011) Trends Genet. , vol.27 , pp. 141-148
    • MacQuarrie, K.L.1    Fong, A.P.2    Morse, R.H.3    Tapscott, S.J.4
  • 102
    • 80054084614 scopus 로고    scopus 로고
    • Pioneer factors: Directing transcriptional regulators within the chromatin environment
    • Magnani L, Eeckhoute J, Lupien M. 2011. Pioneer factors: directing transcriptional regulators within the chromatin environment. Trends Genet. 27:465-74
    • (2011) Trends Genet. , vol.27 , pp. 465-474
    • Magnani, L.1    Eeckhoute, J.2    Lupien, M.3
  • 103
    • 0029898760 scopus 로고    scopus 로고
    • Extra specificity from extradenticle: The partnership between HOX and PBX/EXD homeodomain proteins
    • Mann RS, Chan SK. 1996. Extra specificity from extradenticle: the partnership between HOX and PBX/EXD homeodomain proteins. Trends Genet. 12:258-62
    • (1996) Trends Genet. , vol.12 , pp. 258-262
    • Mann, R.S.1    Chan, S.K.2
  • 104
    • 0025017612 scopus 로고
    • Functional dissection of Ultrabithorax proteins in D. melanogaster
    • Mann RS, Hogness DS. 1990. Functional dissection of Ultrabithorax proteins in D. melanogaster. Cell 60:597-610
    • (1990) Cell , vol.60 , pp. 597-610
    • Mann, R.S.1    Hogness, D.S.2
  • 105
    • 67749095703 scopus 로고    scopus 로고
    • Hox specificity: Unique roles for cofactors and collaborators
    • Mann RS, Lelli KM, Joshi R. 2009. Hox specificity: unique roles for cofactors and collaborators. Curr. Top. Dev. Biol. 88:63-101
    • (2009) Curr. Top. Dev. Biol. , vol.88 , pp. 63-101
    • Mann, R.S.1    Lelli, K.M.2    Joshi, R.3
  • 106
    • 79952287917 scopus 로고    scopus 로고
    • Occlusion of regulatory sequences by promoter nucleosomes in vivo
    • Mao C, Brown CR, Griesenbeck J, Boeger H. 2011. Occlusion of regulatory sequences by promoter nucleosomes in vivo. PLoS ONE 6:e17521
    • (2011) PLoS ONE , vol.6
    • Mao, C.1    Brown, C.R.2    Griesenbeck, J.3    Boeger, H.4
  • 107
    • 78751662908 scopus 로고    scopus 로고
    • The Polycomb complex PRC2 and its mark in life
    • Margueron R, Reinberg D. 2011. The Polycomb complex PRC2 and its mark in life. Nature 469:343-49
    • (2011) Nature , vol.469 , pp. 343-349
    • Margueron, R.1    Reinberg, D.2
  • 108
    • 65249167505 scopus 로고    scopus 로고
    • DNA binding site sequence directs glucocorticoid receptor structure and activity
    • Meijsing SH, Pufall MA, So AY, Bates DL, Chen L, Yamamoto KR. 2009. DNA binding site sequence directs glucocorticoid receptor structure and activity. Science 324:407-10
    • (2009) Science , vol.324 , pp. 407-410
    • Meijsing, S.H.1    Pufall, M.A.2    So, A.Y.3    Bates, D.L.4    Chen, L.5    Yamamoto, K.R.6
  • 109
    • 0037991521 scopus 로고    scopus 로고
    • The hexapeptide and linker regions of the AbdA Hox protein regulate its activating and repressive functions
    • Merabet S, Kambris Z, Capovilla M, Berenger H, Pradel J, Graba Y. 2003. The hexapeptide and linker regions of the AbdA Hox protein regulate its activating and repressive functions. Dev. Cell 4:761-68
    • (2003) Dev. Cell , vol.4 , pp. 761-768
    • Merabet, S.1    Kambris, Z.2    Capovilla, M.3    Berenger, H.4    Pradel, J.5    Graba, Y.6
  • 110
    • 80055089834 scopus 로고    scopus 로고
    • Insights into Hox protein function from a large scale combinatorial analysis of protein domains
    • Merabet S, Litim-Mecheri I, Karlsson D, Dixit R, Saadaoui M, et al. 2011. Insights into Hox protein function from a large scale combinatorial analysis of protein domains. PLoS Genet. 7:e1002302
    • (2011) PLoS Genet. , vol.7
    • Merabet, S.1    Litim-Mecheri, I.2    Karlsson, D.3    Dixit, R.4    Saadaoui, M.5
  • 111
    • 36448980363 scopus 로고    scopus 로고
    • A unique extradenticle recruitment mode in the Drosophila Hox protein Ultrabithorax
    • Merabet S, Saadaoui M, Sambrani N, Hudry B, Pradel J, et al. 2007. A unique extradenticle recruitment mode in the Drosophila Hox protein Ultrabithorax. Proc. Natl. Acad. Sci. USA 104:16946-51
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 16946-16951
    • Merabet, S.1    Saadaoui, M.2    Sambrani, N.3    Hudry, B.4    Pradel, J.5
  • 113
    • 0037369952 scopus 로고    scopus 로고
    • Collaborative competition mechanism for gene activation in vivo
    • Miller JA, Widom J. 2003. Collaborative competition mechanism for gene activation in vivo. Mol. Cell. Biol. 23:1623-32
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 1623-1632
    • Miller, J.A.1    Widom, J.2
  • 114
    • 78651107675 scopus 로고    scopus 로고
    • Nucleosome-mediated cooperativity between transcription factors
    • Mirny LA. 2010. Nucleosome-mediated cooperativity between transcription factors. Proc. Natl. Acad. Sci. USA 107:22534-39
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 22534-22539
    • Mirny, L.A.1
  • 115
    • 0035976797 scopus 로고    scopus 로고
    • Crystal structure of a ternary SAP-1/SRF/c-fos SRE DNA complex
    • Mo Y, Ho W, Johnston K, Marmorstein R. 2001. Crystal structure of a ternary SAP-1/SRF/c-fos SRE DNA complex. J. Mol. Biol. 314:495-506
    • (2001) J. Mol. Biol. , vol.314 , pp. 495-506
    • Mo, Y.1    Ho, W.2    Johnston, K.3    Marmorstein, R.4
  • 116
    • 33644976371 scopus 로고    scopus 로고
    • Hox cofactors in vertebrate development
    • Moens CB, Selleri L. 2006. Hox cofactors in vertebrate development. Dev. Biol. 291:193-206
    • (2006) Dev. Biol. , vol.291 , pp. 193-206
    • Moens, C.B.1    Selleri, L.2
  • 117
    • 81855227640 scopus 로고    scopus 로고
    • A regulatory archipelago controls Hox genes transcription in digits
    • Montavon T, Soshnikova N, Mascrez B, Joye E, Thevenet L, et al. 2011. A regulatory archipelago controls Hox genes transcription in digits. Cell 147:1132-45
    • (2011) Cell , vol.147 , pp. 1132-1145
    • Montavon, T.1    Soshnikova, N.2    Mascrez, B.3    Joye, E.4    Thevenet, L.5
  • 118
    • 33747072322 scopus 로고    scopus 로고
    • Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster
    • Moorman C, Sun LV, Wang J, de Wit E, Talhout W, et al. 2006. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 103:12027-32
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 12027-12032
    • Moorman, C.1    Sun, L.V.2    Wang, J.3    De Wit, E.4    Talhout, W.5
  • 119
    • 45849138845 scopus 로고    scopus 로고
    • Expanding the specificity of DNA targeting by harnessing cooperative assembly
    • Moretti R, Ansari AZ. 2008. Expanding the specificity of DNA targeting by harnessing cooperative assembly. Biochimie 90:1015-25
    • (2008) Biochimie , vol.90 , pp. 1015-1025
    • Moretti, R.1    Ansari, A.Z.2
  • 120
    • 80052962636 scopus 로고    scopus 로고
    • Structural constraints in collaborative competition of transcription factors against the nucleosome
    • Moyle-Heyrman G, Tims HS, Widom J. 2011. Structural constraints in collaborative competition of transcription factors against the nucleosome. J. Mol. Biol. 412:634-46
    • (2011) J. Mol. Biol. , vol.412 , pp. 634-646
    • Moyle-Heyrman, G.1    Tims, H.S.2    Widom, J.3
  • 123
    • 84858329386 scopus 로고    scopus 로고
    • Deciphering the Sox-Oct partner code by quantitative cooperativity measurements
    • doi: 10.1093/nar/gks153
    • Ng CK, Li NX, Chee S, Prabhakar S, Kolatkar PR, Jauch R. 2012. Deciphering the Sox-Oct partner code by quantitative cooperativity measurements. Nucleic Acids Res. doi: 10.1093/nar/gks153
    • (2012) Nucleic Acids Res.
    • Ng, C.K.1    Li, N.X.2    Chee, S.3    Prabhakar, S.4    Kolatkar, P.R.5    Jauch, R.6
  • 124
    • 80055074510 scopus 로고    scopus 로고
    • Temporal coordination of gene networks by Zelda in the early Drosophila embryo
    • Nien CY, Liang HL, Butcher S, Sun Y, Fu S, et al. 2011. Temporal coordination of gene networks by Zelda in the early Drosophila embryo. PLoS Genet. 7:e1002339
    • (2011) PLoS Genet. , vol.7
    • Nien, C.Y.1    Liang, H.L.2    Butcher, S.3    Sun, Y.4    Fu, S.5
  • 126
    • 81255129594 scopus 로고    scopus 로고
    • Competition for cofactor-dependent DNA binding underlies Hox phenotypic suppression
    • Noro B, Lelli K, Sun L, Mann RS. 2011. Competition for cofactor-dependent DNA binding underlies Hox phenotypic suppression. Genes Dev. 25:2327-32
    • (2011) Genes Dev. , vol.25 , pp. 2327-2332
    • Noro, B.1    Lelli, K.2    Sun, L.3    Mann, R.S.4
  • 127
    • 45449111373 scopus 로고    scopus 로고
    • Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites
    • Noyes MB, Christensen RG, Wakabayashi A, Stormo GD, Brodsky MH, Wolfe SA. 2008. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89
    • (2008) Cell , vol.133 , pp. 1277-1289
    • Noyes, M.B.1    Christensen, R.G.2    Wakabayashi, A.3    Stormo, G.D.4    Brodsky, M.H.5    Wolfe, S.A.6
  • 128
    • 5444243359 scopus 로고    scopus 로고
    • Active genes dynamically colocalize to shared sites of ongoing transcription
    • Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, et al. 2004. Active genes dynamically colocalize to shared sites of ongoing transcription. Nat. Genet. 36:1065-71
    • (2004) Nat. Genet. , vol.36 , pp. 1065-1071
    • Osborne, C.S.1    Chakalova, L.2    Brown, K.E.3    Carter, D.4    Horton, A.5
  • 129
    • 79959856940 scopus 로고    scopus 로고
    • The role of response elements organization in transcription factor selectivity: The IFN-βenhanceosome example
    • Pan Y, Nussinov R. 2011. The role of response elements organization in transcription factor selectivity: the IFN-βenhanceosome example. PLoS Comput. Biol. 7:e1002077
    • (2011) PLoS Comput. Biol. , vol.7
    • Pan, Y.1    Nussinov, R.2
  • 130
    • 75149141847 scopus 로고    scopus 로고
    • Mechanisms of transcription factor selectivity
    • Pan Y, Tsai CJ, Ma B, Nussinov R. 2010. Mechanisms of transcription factor selectivity. Trends Genet. 26:75-83
    • (2010) Trends Genet. , vol.26 , pp. 75-83
    • Pan, Y.1    Tsai, C.J.2    Ma, B.3    Nussinov, R.4
  • 132
    • 10044239268 scopus 로고    scopus 로고
    • Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-βenhancer
    • Panne D, Maniatis T, Harrison SC. 2004. Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-βenhancer. EMBO J. 23:4384-93
    • (2004) EMBO J. , vol.23 , pp. 4384-4393
    • Panne, D.1    Maniatis, T.2    Harrison, S.C.3
  • 133
    • 34250017968 scopus 로고    scopus 로고
    • An atomic model of the interferon-β enhanceosome
    • Panne D, Maniatis T, Harrison SC. 2007. An atomic model of the interferon-β enhanceosome. Cell 129:1111-23
    • (2007) Cell , vol.129 , pp. 1111-1123
    • Panne, D.1    Maniatis, T.2    Harrison, S.C.3
  • 136
    • 79958204355 scopus 로고    scopus 로고
    • The cis-regulatory logic of Hedgehog gradient responses: Key roles for Gli binding affinity, competition, and cooperativity
    • Parker DS, White MA, Ramos AI, Cohen BA, Barolo S. 2011. The cis-regulatory logic of Hedgehog gradient responses: key roles for Gli binding affinity, competition, and cooperativity. Sci. Signal. 4:ra38
    • (2011) Sci. Signal. , vol.4
    • Parker, D.S.1    White, M.A.2    Ramos, A.I.3    Cohen, B.A.4    Barolo, S.5
  • 137
    • 77956521381 scopus 로고    scopus 로고
    • Shadow enhancers foster robustness of Drosophila gastrulation
    • Perry MW, Boettiger AN, Bothma JP, Levine M. 2010. Shadow enhancers foster robustness of Drosophila gastrulation. Curr. Biol. 20:1562-67
    • (2010) Curr. Biol. , vol.20 , pp. 1562-1567
    • Perry, M.W.1    Boettiger, A.N.2    Bothma, J.P.3    Levine, M.4
  • 138
    • 0029875865 scopus 로고    scopus 로고
    • A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites
    • Polach KJ, Widom J. 1996. A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites. J. Mol. Biol. 258:800-12
    • (1996) J. Mol. Biol. , vol.258 , pp. 800-812
    • Polach, K.J.1    Widom, J.2
  • 139
    • 84860371870 scopus 로고    scopus 로고
    • Combinatorial complexity in chromatin structure and function: Revisiting the histone code
    • Rando OJ. 2012. Combinatorial complexity in chromatin structure and function: revisiting the histone code. Curr. Opin. Genet. Dev. 22:148-55
    • (2012) Curr. Opin. Genet. Dev. , vol.22 , pp. 148-155
    • Rando, O.J.1
  • 140
    • 67650711140 scopus 로고    scopus 로고
    • Genome-wide views of chromatin structure
    • Rando OJ, ChangHY. 2009. Genome-wide views of chromatin structure. Annu. Rev. Biochem. 78:245-71
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 245-271
    • Rando, O.J.1    Chang, H.Y.2
  • 142
    • 4544285896 scopus 로고    scopus 로고
    • Loss of function but no gain of function caused by amino acid substitutions in the hexapeptide Hoxa1 in vivo
    • Remacle S, Abbas L, De Backer O, Pacico N, Gavalas A, et al. 2004. Loss of function but no gain of function caused by amino acid substitutions in the hexapeptide Hoxa1 in vivo. Mol. Cell. Biol. 24:8567- 75
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 8567-8575
    • Remacle, S.1    Abbas, L.2    De Backer, O.3    Pacico, N.4    Gavalas, A.5
  • 143
    • 83255164884 scopus 로고    scopus 로고
    • Comprehensive genome-wide protein-DNA interactions detected at singlenucleotide resolution
    • Rhee HS, Pugh BF. 2011. Comprehensive genome-wide protein-DNA interactions detected at singlenucleotide resolution. Cell 147:1408-19
    • (2011) Cell , vol.147 , pp. 1408-1419
    • Rhee, H.S.1    Pugh, B.F.2
  • 146
    • 78650331647 scopus 로고    scopus 로고
    • Identification of functional elements and regulatory circuits by Drosophila modENCODE
    • Roy S, Ernst J, Kharchenko PV, Kheradpour P, NegreN, et al. 2010. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330:1787-97
    • (2010) Science , vol.330 , pp. 1787-1797
    • Roy, S.1    Ernst, J.2    Kharchenko, P.V.3    Kheradpour, P.4    Negre, N.5
  • 147
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • Rust MJ, Bates M, Zhuang X. 2006. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 3:793-95
    • (2006) Nat. Methods , vol.3 , pp. 793-795
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 149
    • 84859528845 scopus 로고    scopus 로고
    • TheTAGteammotif facilitates binding of 21 sequence-specific transcription factors in the Drosophila embryo
    • Satija R, Bradley RK. 2012. TheTAGteammotif facilitates binding of 21 sequence-specific transcription factors in the Drosophila embryo. Genome Res. 22:656-65
    • (2012) Genome Res. , vol.22 , pp. 656-665
    • Satija, R.1    Bradley, R.K.2
  • 150
    • 0034598793 scopus 로고    scopus 로고
    • HoxA9-mediated immortalization of myeloid progenitors requires functional interactions with TALE cofactors Pbx and Meis
    • Schnabel CA, Jacobs Y, Cleary ML. 2000. HoxA9-mediated immortalization of myeloid progenitors requires functional interactions with TALE cofactors Pbx and Meis. Oncogene 19:608-16
    • (2000) Oncogene , vol.19 , pp. 608-616
    • Schnabel, C.A.1    Jacobs, Y.2    Cleary, M.L.3
  • 151
    • 73349090560 scopus 로고    scopus 로고
    • Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
    • Schoenfelder S, Sexton T, Chakalova L, Cope NF, Horton A, et al. 2010. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat. Genet. 42:53-61
    • (2010) Nat. Genet. , vol.42 , pp. 53-61
    • Schoenfelder, S.1    Sexton, T.2    Chakalova, L.3    Cope, N.F.4    Horton, A.5
  • 152
    • 68349125112 scopus 로고    scopus 로고
    • What controls nucleosome positions
    • Segal E, Widom J. 2009. What controls nucleosome positions? Trends Genet. 25:335-43
    • (2009) Trends Genet , vol.25 , pp. 335-343
    • Segal, E.1    Widom, J.2
  • 153
    • 64349088929 scopus 로고    scopus 로고
    • Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA
    • Sekiya T, Muthurajan UM, Luger K, Tulin AV, Zaret KS. 2009. Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA. GenesDev. 23:804-9.
    • (2009) Genes Dev. , vol.23 , pp. 804-809
    • Sekiya, T.1    Muthurajan, U.M.2    Luger, K.3    Tulin, A.V.4    Zaret, K.S.5
  • 154
    • 35349013604 scopus 로고    scopus 로고
    • Repression by Groucho/TLE/Grg proteins: Genomic site recruitment generates compacted chromatin in vitro and impairs activator binding in vivo
    • Sekiya T, Zaret KS. 2007. Repression by Groucho/TLE/Grg proteins: Genomic site recruitment generates compacted chromatin in vitro and impairs activator binding in vivo. Mol. Cell 28:291-303
    • (2007) Mol. Cell , vol.28 , pp. 291-303
    • Sekiya, T.1    Zaret, K.S.2
  • 155
    • 79953319002 scopus 로고    scopus 로고
    • Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
    • Serandour AA, Avner S, Percevault F, Demay F, Bizot M, et al. 2011. Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers. Genome Res. 21:555-65
    • (2011) Genome Res. , vol.21 , pp. 555-565
    • Serandour, A.A.1    Avner, S.2    Percevault, F.3    Demay, F.4    Bizot, M.5
  • 156
    • 84856747483 scopus 로고    scopus 로고
    • Three-dimensional folding and functional organization principles of the Drosophila genome
    • Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, et al. 2012. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148:458-72
    • (2012) Cell , vol.148 , pp. 458-472
    • Sexton, T.1    Yaffe, E.2    Kenigsberg, E.3    Bantignies, F.4    Leblanc, B.5
  • 157
    • 4544348050 scopus 로고    scopus 로고
    • HOXB6 protein is bound to CREB-binding protein and represses globin expression in aDNA binding-dependent, PBX interaction- independent process
    • Shen W, Chrobak D, Krishnan K, Lawrence HJ, Largman C. 2004. HOXB6 protein is bound to CREB-binding protein and represses globin expression in aDNA binding-dependent, PBX interaction- independent process. J. Biol. Chem. 279:39895-904
    • (2004) J. Biol. Chem. , vol.279 , pp. 39895-39904
    • Shen, W.1    Chrobak, D.2    Krishnan, K.3    Lawrence, H.J.4    Largman, C.5
  • 158
    • 17444401797 scopus 로고    scopus 로고
    • Regulation of odorant receptors: One allele at a time
    • Shykind BM. 2005. Regulation of odorant receptors: one allele at a time. Hum. Mol. Genet. 14(Spec. No. 1):R33-39
    • (2005) Hum. Mol. Genet. , vol.14 , Issue.SPEC. 1
    • Shykind, B.M.1
  • 159
    • 83455164709 scopus 로고    scopus 로고
    • Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex
    • Siggers T, Duyzend MH, Reddy J, Khan S, Bulyk ML. 2011. Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex. Mol. Syst. Biol. 7:555
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 555
    • Siggers, T.1    Duyzend, M.H.2    Reddy, J.3    Khan, S.4    Bulyk, M.L.5
  • 160
    • 70349469565 scopus 로고    scopus 로고
    • Mechanisms of Polycomb gene silencing: Knowns and unknowns
    • Simon JA, Kingston RE. 2009. Mechanisms of Polycomb gene silencing: knowns and unknowns. Nat. Rev. Mol. Cell Biol. 10:697-708
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 697-708
    • Simon, J.A.1    Kingston, R.E.2
  • 161
    • 83255188878 scopus 로고    scopus 로고
    • Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
    • Slattery M, RileyT, Liu P, AbeN, Gomez-Alcala P, et al. 2011. Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins. Cell 147:1270-82
    • (2011) Cell , vol.147 , pp. 1270-1282
    • Slattery, M.1    Riley, T.2    Liu, P.3    Abe, N.4    Gomez-Alcala, P.5
  • 163
    • 77950580571 scopus 로고    scopus 로고
    • Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer
    • Swanson CI, Evans NC, Barolo S. 2010. Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer. Dev. Cell 18:359-70
    • (2010) Dev. Cell , vol.18 , pp. 359-370
    • Swanson, C.I.1    Evans, N.C.2    Barolo, S.3
  • 164
    • 77949874234 scopus 로고    scopus 로고
    • Histone variants: Ancient wrap artists of the epigenome
    • Talbert PB, Henikoff S. 2010. Histone variants: ancient wrap artists of the epigenome. Nat. Rev. Mol. Cell Biol. 11:264-75
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 264-275
    • Talbert, P.B.1    Henikoff, S.2
  • 165
    • 0029617947 scopus 로고
    • Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome
    • Thanos D, Maniatis T. 1995. Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome. Cell 83:1091-100
    • (1995) Cell , vol.83 , pp. 1091-1100
    • Thanos, D.1    Maniatis, T.2
  • 166
    • 79955760882 scopus 로고    scopus 로고
    • Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
    • Thomas S, Li XY, Sabo PJ, Sandstrom R, Thurman RE, et al. 2011. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol. 12:R43
    • (2011) Genome Biol. , vol.12
    • Thomas, S.1    Li, X.Y.2    Sabo, P.J.3    Sandstrom, R.4    Thurman, R.E.5
  • 167
  • 168
    • 79959264470 scopus 로고    scopus 로고
    • Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters
    • Tolkunov D, Zawadzki KA, Singer C, Elfving N, Morozov AV, Broach JR. 2011. Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters. Mol. Biol. Cell 22:2106-18
    • (2011) Mol. Biol. Cell , vol.22 , pp. 2106-2118
    • Tolkunov, D.1    Zawadzki, K.A.2    Singer, C.3    Elfving, N.4    Morozov, A.V.5    Broach, J.R.6
  • 169
    • 15944378903 scopus 로고    scopus 로고
    • Post-translational modifications influence transcription factor activity: A view from the ETS superfamily
    • Tootle TL, Rebay I. 2005. Post-translational modifications influence transcription factor activity: a view from the ETS superfamily. BioEssays 27:285-98
    • (2005) BioEssays , vol.27 , pp. 285-298
    • Tootle, T.L.1    Rebay, I.2
  • 170
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C, Gold L. 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249:505-10
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 171
    • 0034007256 scopus 로고    scopus 로고
    • Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase
    • van Steensel B, Henikoff S. 2000. Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase. Nat. Biotechnol. 18:424-28
    • (2000) Nat. Biotechnol. , vol.18 , pp. 424-428
    • Van Steensel, B.1    Henikoff, S.2
  • 172
    • 84870166556 scopus 로고    scopus 로고
    • Large-scale nuclear architecture and transcriptional control
    • Vaquerizas JM, Akhtar A, Luscombe NM. 2011. Large-scale nuclear architecture and transcriptional control. Subcell. Biochem. 52:279-95
    • (2011) Subcell. Biochem. , vol.52 , pp. 279-295
    • Vaquerizas, J.M.1    Akhtar, A.2    Luscombe, N.M.3
  • 173
    • 0036229862 scopus 로고    scopus 로고
    • When Ets transcription factors meet their partners
    • Verger A, Duterque-Coquillaud M. 2002. When Ets transcription factors meet their partners. BioEssays 24:362-70
    • (2002) BioEssays , vol.24 , pp. 362-370
    • Verger, A.1    Duterque-Coquillaud, M.2
  • 174
    • 79954468738 scopus 로고    scopus 로고
    • Hox and Pbx factors control retinoic acid synthesis during hindbrain segmentation
    • Vitobello A, Ferretti E, Lampe X, Vilain N, Ducret S, et al. 2011. Hox and Pbx factors control retinoic acid synthesis during hindbrain segmentation. Dev. Cell 20:469-82
    • (2011) Dev. Cell , vol.20 , pp. 469-482
    • Vitobello, A.1    Ferretti, E.2    Lampe, X.3    Vilain, N.4    Ducret, S.5
  • 175
    • 80052000538 scopus 로고    scopus 로고
    • Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism
    • Voss TC, Schiltz RL, Sung MH, Yen PM, Stamatoyannopoulos JA, et al. 2011. Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism. Cell 146:544- 54
    • (2011) Cell , vol.146 , pp. 544-554
    • Voss, T.C.1    Schiltz, R.L.2    Sung, M.H.3    Yen, P.M.4    Stamatoyannopoulos, J.A.5
  • 177
    • 70349961774 scopus 로고    scopus 로고
    • Different gene regulation strategies revealed by analysis of binding motifs
    • Wunderlich Z, Mirny LA. 2009. Different gene regulation strategies revealed by analysis of binding motifs. Trends Genet. 25:434-40
    • (2009) Trends Genet. , vol.25 , pp. 434-440
    • Wunderlich, Z.1    Mirny, L.A.2
  • 178
    • 0035871879 scopus 로고    scopus 로고
    • Identification of novel functional regions important for the activity of HOXB7 in mammalian cells
    • Yaron Y, McAdara JK, Lynch M, Hughes E, Gasson JC. 2001. Identification of novel functional regions important for the activity of HOXB7 in mammalian cells. J. Immunol. 166:5058-67
    • (2001) J. Immunol. , vol.166 , pp. 5058-5067
    • Yaron, Y.1    McAdara, J.K.2    Lynch, M.3    Hughes, E.4    Gasson, J.C.5
  • 179
    • 80052284848 scopus 로고    scopus 로고
    • OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes
    • You JS, Kelly TK, De Carvalho DD, Taberlay PC, Liang G, Jones PA. 2011. OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes. Proc. Natl. Acad. Sci. USA 108:14497-502
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 14497-14502
    • You, J.S.1    Kelly, T.K.2    De Carvalho, D.D.3    Taberlay, P.C.4    Liang, G.5    Jones, P.A.6
  • 180
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: Establishing competence for gene expression
    • Zaret KS, Carroll JS. 2011. Pioneer transcription factors: establishing competence for gene expression. Genes Dev. 25:2227-41
    • (2011) Genes Dev. , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2
  • 181
    • 78650304236 scopus 로고    scopus 로고
    • Charting histonemodifications and the functional organization of mammalian genomes
    • ZhouVW, Goren A, Bernstein BE. 2011. Charting histonemodifications and the functional organization of mammalian genomes. Nat. Rev. Genet. 12:7-18
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 7-18
    • Zhou, V.W.1    Goren, A.2    Bernstein, B.E.3
  • 182
    • 79959359483 scopus 로고    scopus 로고
    • Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4
    • Zhou X, O'Shea EK. 2011. Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4. Mol. Cell 42:826-36
    • (2011) Mol. Cell , vol.42 , pp. 826-836
    • Zhou, X.1    O'Shea, E.K.2
  • 183
    • 84863338247 scopus 로고    scopus 로고
    • Differential regulation of mesodermal gene expression by Drosophila cell type-specific Forkhead transcription factors
    • Zhu X, Ahmad SM, Aboukhalil A, Busser BW, Kim Y, et al. 2012. Differential regulation of mesodermal gene expression by Drosophila cell type-specific Forkhead transcription factors. Development 139:1457- 66
    • (2012) Development , vol.139 , pp. 1457-1466
    • Zhu, X.1    Ahmad, S.M.2    Aboukhalil, A.3    Busser, B.W.4    Kim, Y.5
  • 184
    • 0018616376 scopus 로고
    • Unscheduled DNA synthesis after partialUVirradiation of the cell nucleus: Distribution in interphase and metaphase
    • ZornC, CremerC, CremerT, Zimmer J. 1979. UnscheduledDNAsynthesis after partialUVirradiation of the cell nucleus: Distribution in interphase and metaphase. Exp. Cell Res. 124:111-19
    • (1979) Exp. Cell Res. , vol.124 , pp. 111-119
    • Zorn, C.1    Cremer, C.2    Cremer, T.3    Zimmer, J.4
  • 185
    • 80054693831 scopus 로고    scopus 로고
    • The nuclear envelope as a chromatin organizer
    • Zuleger N, Robson MI, Schirmer EC. 2011. The nuclear envelope as a chromatin organizer. Nucleus 2:339-49
    • (2011) Nucleus , vol.2 , pp. 339-349
    • Zuleger, N.1    Robson, M.I.2    Schirmer, E.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.