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Volumn 3, Issue 4, 2005, Pages 0588-0598

Functional evolution of a cis-regulatory module

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; DROSOPHILA PROTEIN; EVEN SKIPPED PROTEIN, DROSOPHILA; EVEN-SKIPPED PROTEIN, DROSOPHILA; HOMEODOMAIN PROTEIN; PEPTIDE FRAGMENT; TRANSCRIPTION FACTOR;

EID: 19344368645     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.0030093     Document Type: Article
Times cited : (171)

References (41)
  • 2
    • 0036889175 scopus 로고    scopus 로고
    • Functional evolution of noncoding DNA
    • Ludwig MZ (2002) Functional evolution of noncoding DNA. Curr Opin Genet Dev 12: 634-639.
    • (2002) Curr Opin Genet Dev , vol.12 , pp. 634-639
    • Ludwig, M.Z.1
  • 3
    • 0034893582 scopus 로고    scopus 로고
    • Rapid evolution of cis-regulatory sequences via local point mutations
    • Stone JR, Wray GA (2001) Rapid evolution of cis-regulatory sequences via local point mutations. Mol Biol Evol 18: 1764-1770.
    • (2001) Mol Biol Evol , vol.18 , pp. 1764-1770
    • Stone, J.R.1    Wray, G.A.2
  • 4
    • 0642368358 scopus 로고    scopus 로고
    • Position specific variation in the rate of evolution in transcription factor binding sites
    • Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB (2003) Position specific variation in the rate of evolution in transcription factor binding sites. BMC Evol Biol 3: 19.
    • (2003) BMC Evol Biol , vol.3 , pp. 19
    • Moses, A.M.1    Chiang, D.Y.2    Kellis, M.3    Lander, E.S.4    Eisen, M.B.5
  • 5
    • 3042722019 scopus 로고    scopus 로고
    • Evolutionary changes in cis and trans gene regulation
    • Wittkopp PJ, Haerum BK, Clark AG (2004) Evolutionary changes in cis and trans gene regulation. Nature 430: 85-88.
    • (2004) Nature , vol.430 , pp. 85-88
    • Wittkopp, P.J.1    Haerum, B.K.2    Clark, A.G.3
  • 6
    • 0026744792 scopus 로고
    • Regulation of even-skipped stripe 2 in the Drosophila embryo
    • Small S, Blair A, Levine M (1992) Regulation of even-skipped stripe 2 in the Drosophila embryo. EMBO J 11: 4047-4057.
    • (1992) EMBO J , vol.11 , pp. 4047-4057
    • Small, S.1    Blair, A.2    Levine, M.3
  • 7
    • 0030030902 scopus 로고    scopus 로고
    • The eve stripe 2 enhancer employs multiple modes of transcriptional synergy
    • Arnosti DN, Barolo S, Levine M, Small S (1996) The eve stripe 2 enhancer employs multiple modes of transcriptional synergy. Development 122: 205-214.
    • (1996) Development , vol.122 , pp. 205-214
    • Arnosti, D.N.1    Barolo, S.2    Levine, M.3    Small, S.4
  • 8
    • 0036848430 scopus 로고    scopus 로고
    • Anterior repression of a Drosophila stripe enhancer requires three position-specific mechanisms
    • Andrioli LP, Vasisht V, Theodosopoulou E, Oberstein A, Small S (2002) Anterior repression of a Drosophila stripe enhancer requires three position-specific mechanisms. Development 129: 4931-4940.
    • (2002) Development , vol.129 , pp. 4931-4940
    • Andrioli, L.P.1    Vasisht, V.2    Theodosopoulou, E.3    Oberstein, A.4    Small, S.5
  • 9
    • 0242418246 scopus 로고    scopus 로고
    • Phylogenetic shadowing of primate sequences to find functional regions of the human genome
    • Boffelli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, et al. (2003) Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science 299: 1391-1394.
    • (2003) Science , vol.299 , pp. 1391-1394
    • Boffelli, D.1    McAuliffe, J.2    Ovcharenko, D.3    Lewis, K.D.4    Ovcharenko, I.5
  • 10
    • 0031889035 scopus 로고    scopus 로고
    • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change
    • Ludwig MZ, Patel NH, Kreitman M (1998) Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change. Development 125: 949-958.
    • (1998) Development , vol.125 , pp. 949-958
    • Ludwig, M.Z.1    Patel, N.H.2    Kreitman, M.3
  • 11
    • 0034598832 scopus 로고    scopus 로고
    • Evidence for stabilizing selection in a eukaryotic enhancer element
    • Ludwig MZ, Bergman C, Patel NH, Kreitman M (2000) Evidence for stabilizing selection in a eukaryotic enhancer element. Nature 403: 564-567.
    • (2000) Nature , vol.403 , pp. 564-567
    • Ludwig, M.Z.1    Bergman, C.2    Patel, N.H.3    Kreitman, M.4
  • 12
    • 0033037862 scopus 로고    scopus 로고
    • Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients
    • Fujioka M, Emi-Sarker Y, Yusibova GL, Goto T, Jaynes JB (1999) Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients. Development 126: 2527-2538.
    • (1999) Development , vol.126 , pp. 2527-2538
    • Fujioka, M.1    Emi-Sarker, Y.2    Yusibova, G.L.3    Goto, T.4    Jaynes, J.B.5
  • 13
    • 0036796825 scopus 로고    scopus 로고
    • The repressor activity of even-skipped is highly conserved, and is sufficient to activate engrailed and to regulate both the spacing and stability of parasegment boundaries
    • Fujioka M, Yusibova GL, Patel NH, Brown SJ, Jaynes JB (2002) The repressor activity of even-skipped is highly conserved, and is sufficient to activate engrailed and to regulate both the spacing and stability of parasegment boundaries. Development 129: 4411-4421.
    • (2002) Development , vol.129 , pp. 4411-4421
    • Fujioka, M.1    Yusibova, G.L.2    Patel, N.H.3    Brown, S.J.4    Jaynes, J.B.5
  • 14
    • 0035042173 scopus 로고    scopus 로고
    • Establishment and maintenance of parasegmental compartments
    • Hughes SC, Krause HM (2001) Establishment and maintenance of parasegmental compartments. Development 128: 1109-1118.
    • (2001) Development , vol.128 , pp. 1109-1118
    • Hughes, S.C.1    Krause, H.M.2
  • 15
    • 0015405272 scopus 로고
    • Mutation rate and dominance of genes affecting viability in Drosophila melanogaster
    • Mukai TS, Chigusa SI, Mettler LE, Crow JF (1972) Mutation rate and dominance of genes affecting viability in Drosophila melanogaster. Genetics72: 335-355.
    • (1972) Genetics , vol.72 , pp. 335-355
    • Mukai, T.S.1    Chigusa, S.I.2    Mettler, L.E.3    Crow, J.F.4
  • 16
    • 0024502117 scopus 로고
    • Early and late periodic patterns of even skipped expression are controlled by distinct regulatory elements that respond to different spatial cues
    • Goto T, Macdonald P, Maniatis T (1989) Early and late periodic patterns of even skipped expression are controlled by distinct regulatory elements that respond to different spatial cues. Cell 57: 413-422.
    • (1989) Cell , vol.57 , pp. 413-422
    • Goto, T.1    Macdonald, P.2    Maniatis, T.3
  • 17
    • 0024655056 scopus 로고
    • Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila
    • Harding K, Hoey T, Warrior R, Levine M (1989) Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila. EMBO J 8: 2105-1212.
    • (1989) EMBO J , vol.8 , pp. 2105-11212
    • Harding, K.1    Hoey, T.2    Warrior, R.3    Levine, M.4
  • 18
    • 0026355632 scopus 로고
    • Regulation of a segmentation stripe by overlapping activators and repressors in the Drosophila embryo
    • Stanojevic D, Small S, Levine M (1991) Regulation of a segmentation stripe by overlapping activators and repressors in the Drosophila embryo. Science 254: 1385-1387.
    • (1991) Science , vol.254 , pp. 1385-1387
    • Stanojevic, D.1    Small, S.2    Levine, M.3
  • 19
    • 0023821768 scopus 로고
    • Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints
    • Tagle DA, Koop BF, Goodman M, Slightom JL, Hess DL, et al. (1988) Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints. J Mol Biol 203: 439-455.
    • (1988) J Mol Biol , vol.203 , pp. 439-455
    • Tagle, D.A.1    Koop, B.F.2    Goodman, M.3    Slightom, J.L.4    Hess, D.L.5
  • 20
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz GZ, Stormo GD (1999) Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15: 563-577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 21
    • 0023679744 scopus 로고
    • The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner
    • Driever W, Nusslein-Volhard C (1988) The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner. Cell 54: 95-104.
    • (1988) Cell , vol.54 , pp. 95-104
    • Driever, W.1    Nusslein-Volhard, C.2
  • 22
    • 0037209074 scopus 로고    scopus 로고
    • Analysis and function of transcriptional regulatory elements: Insights from Drosophila
    • Arnosti DN (2003) Analysis and function of transcriptional regulatory elements: Insights from Drosophila. Annu Rev Entomol 48: 579-602.
    • (2003) Annu Rev Entomol , vol.48 , pp. 579-602
    • Arnosti, D.N.1
  • 24
    • 0001232092 scopus 로고
    • Studies on hybrid sterility. II. Localization of sterility factors in Drosophila pseudoobscura hybrids
    • Dobzhansky T (1936) Studies on hybrid sterility. II. Localization of sterility factors in Drosophila pseudoobscura hybrids. Genetics 21: 113-135.
    • (1936) Genetics , vol.21 , pp. 113-135
    • Dobzhansky, T.1
  • 25
    • 0028942011 scopus 로고
    • The population genetics of speciation: The evolution of hybrid incompatibilities
    • Orr HA (1995) The population genetics of speciation: The evolution of hybrid incompatibilities. Genetics 139: 1805-1813.
    • (1995) Genetics , vol.139 , pp. 1805-1813
    • Orr, H.A.1
  • 26
    • 0742271150 scopus 로고    scopus 로고
    • Genes and speciation
    • Wu CI, Ting CT (2004) Genes and speciation. Nat Rev Genet 5: 114-122.
    • (2004) Nat Rev Genet , vol.5 , pp. 114-122
    • Wu, C.I.1    Ting, C.T.2
  • 27
    • 0034644270 scopus 로고    scopus 로고
    • The segment polarity network is a robust developmental module
    • von Dassow G, Meir E, Munro EM, Odell GM (2000) The segment polarity network is a robust developmental module. Nature 406: 188-192.
    • (2000) Nature , vol.406 , pp. 188-192
    • Von Dassow, G.1    Meir, E.2    Munro, E.M.3    Odell, G.M.4
  • 28
    • 0028348486 scopus 로고
    • A genetic and molecular analysis of the 46C chromosomal region surrounding the FMRFamide neuropeptide gene in Drosophila melanogaster
    • O'Brien MA, Roberts MS, Taghert PH (1994) A genetic and molecular analysis of the 46C chromosomal region surrounding the FMRFamide neuropeptide gene in Drosophila melanogaster. Genetics 137: 121-137.
    • (1994) Genetics , vol.137 , pp. 121-137
    • O'Brien, M.A.1    Roberts, M.S.2    Taghert, P.H.3
  • 29
    • 0031814029 scopus 로고    scopus 로고
    • Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins
    • Kosman D, Small S, Reinitz J (1998) Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins. Dev Genes Evol 208: 290-294.
    • (1998) Dev Genes Evol , vol.208 , pp. 290-294
    • Kosman, D.1    Small, S.2    Reinitz, J.3
  • 30
    • 0028762421 scopus 로고
    • Pair-rule expression patterns of even-skipped are found in both short- and long-germ beetles
    • Patel NH, Condron BG, Zinn K (1994) Pair-rule expression patterns of evenskipped are found in both short- and long-germ beetles. Nature 367: 429-434.
    • (1994) Nature , vol.367 , pp. 429-434
    • Patel, N.H.1    Condron, B.G.2    Zinn, K.3
  • 31
    • 0028722641 scopus 로고
    • Imaging neuronal sebsets and other cell types in wholemount Drosophila embryos and larvae using antibody probes
    • Goldstein LSB, Fryberg EA, editors. San Diego: Academic Press
    • Patel NH (1994) Imaging neuronal sebsets and other cell types in wholemount Drosophila embryos and larvae using antibody probes. In: Goldstein LSB, Fryberg EA, editors. Methods in cell biology. San Diego: Academic Press. pp. 445-487.
    • (1994) Methods in Cell Biology , pp. 445-487
    • Patel, N.H.1
  • 32
    • 0029617913 scopus 로고
    • Early even-skipped stripes act as morphogenetic gradients at the single cell level to establish engrailed expression
    • Fujioka M, Jaynes JB, Goto T (1995) Early even-skipped stripes act as morphogenetic gradients at the single cell level to establish engrailed expression. Development 121: 4371-4382.
    • (1995) Development , vol.121 , pp. 4371-4382
    • Fujioka, M.1    Jaynes, J.B.2    Goto, T.3
  • 33
    • 0019945644 scopus 로고
    • Genetic transformation of Drosophila with transposable element vectors
    • Rubin GM, Spradling AC (1982) Genetic transformation of Drosophila with transposable element vectors. Science 218: 348-353.
    • (1982) Science , vol.218 , pp. 348-353
    • Rubin, G.M.1    Spradling, A.C.2
  • 34
    • 0035115973 scopus 로고    scopus 로고
    • Registration of the expression patterns of Drosophila segmentation genes by two independent methods
    • Myasnikova E, Samsonova A, Kozlov K, Samsonova M, Reinitz J (2001) Registration of the expression patterns of Drosophila segmentation genes by two independent methods. Bioinformatics 17: 3-12.
    • (2001) Bioinformatics , vol.17 , pp. 3-12
    • Myasnikova, E.1    Samsonova, A.2    Kozlov, K.3    Samsonova, M.4    Reinitz, J.5
  • 36
    • 0034518158 scopus 로고    scopus 로고
    • VISTA: Visualizing global DNA sequence alignments of arbitrary length
    • Mayor C, Brudno M, Schwartz JR, Poliakov A, Rubin EM, et al. (2000) VISTA: Visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16: 1046-1047.
    • (2000) Bioinformatics , vol.16 , pp. 1046-1047
    • Mayor, C.1    Brudno, M.2    Schwartz, J.R.3    Poliakov, A.4    Rubin, E.M.5
  • 37
    • 0042121222 scopus 로고    scopus 로고
    • MAVID multiple alignment server
    • Bray N, Pachter L (2003) MAVID multiple alignment server. Nucleic Acids Res 31: 3525-3526.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3525-3526
    • Bray, N.1    Pachter, L.2
  • 38
    • 0037154273 scopus 로고    scopus 로고
    • Exploiting transcription factor binding-site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
    • Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, et al. (2002) Exploiting transcription factor binding-site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proc Natl Acad Sci U S A 99: 757-762.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 757-762
    • Berman, B.P.1    Nibu, Y.2    Pfeiffer, B.D.3    Tomancak, P.4    Celniker, S.E.5
  • 39
    • 0012301705 scopus 로고    scopus 로고
    • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
    • Bergman CM, Pfeiffer BD, Rincon-Limas DE, Hoskins RA, Gnirke A, et al. (2002) Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome. Genome Biol 3: 1-20.
    • (2002) Genome Biol , vol.3 , pp. 1-20
    • Bergman, C.M.1    Pfeiffer, B.D.2    Rincon-Limas, D.E.3    Hoskins, R.A.4    Gnirke, A.5
  • 40
    • 0033168460 scopus 로고    scopus 로고
    • The even-skipped locus is contained in a 16-kb chromatin domain
    • Sackerson C, Fujioka M, Goto T (1999) The even-skipped locus is contained in a 16-kb chromatin domain. Dev Biol 211: 39-52.
    • (1999) Dev Biol , vol.211 , pp. 39-52
    • Sackerson, C.1    Fujioka, M.2    Goto, T.3


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