-
1
-
-
0037025364
-
The x-ray crystal structure of the NF-kappa B p50.p65 heterodimer bound to the Interferon beta-kappa B site
-
Berkowitz B, Huang DB, Chen-Park FE, Sigler PB, Ghosh G (2002) The x-ray crystal structure of the NF-kappa B p50.p65 heterodimer bound to the Interferon beta-kappa B site. J Biol Chem 277: 24694-24700
-
(2002)
J Biol Chem
, vol.277
, pp. 24694-24700
-
-
Berkowitz, B.1
Huang, D.B.2
Chen-Park, F.E.3
Sigler, P.B.4
Ghosh, G.5
-
2
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D 54: 905-921
-
(1998)
Acta Crystallogr D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
3
-
-
0032498230
-
The enhanceosome and transcriptional synergy
-
Carey M (1998) The enhanceosome and transcriptional synergy. Cell 92: 5-8
-
(1998)
Cell
, vol.92
, pp. 5-8
-
-
Carey, M.1
-
4
-
-
0032485391
-
Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA
-
Chen L, Glover JN, Hogan PG, Rao A, Harrison SC (1998) Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA. Nature 392: 42-48
-
(1998)
Nature
, vol.392
, pp. 42-48
-
-
Chen, L.1
Glover, J.N.2
Hogan, P.G.3
Rao, A.4
Harrison, S.C.5
-
5
-
-
0035971433
-
Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity
-
Chinenov Y, Kerppola TK (2001) Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity. Oncogene 20: 2438-2452
-
(2001)
Oncogene
, vol.20
, pp. 2438-2452
-
-
Chinenov, Y.1
Kerppola, T.K.2
-
6
-
-
0026604277
-
An ATF/CREB binding site is required for virus induction of the human interferon-β gene
-
Du W, Maniatis T (1992) An ATF/CREB binding site is required for virus induction of the human interferon-β gene. Proc Natl Acad Sci USA 89: 2150-2154
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 2150-2154
-
-
Du, W.1
Maniatis, T.2
-
7
-
-
0027296741
-
Mechanisms of transcriptional synergism between distinct virus-inducible enhancer elements
-
Du W, Thanos D, Maniatis T (1993) Mechanisms of transcriptional synergism between distinct virus-inducible enhancer elements. Cell 74: 887-898
-
(1993)
Cell
, vol.74
, pp. 887-898
-
-
Du, W.1
Thanos, D.2
Maniatis, T.3
-
8
-
-
0027049805
-
The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: Crystal structure of the protein-DNA complex
-
Ellenberger TE, Brandi CJ, Struhl K, Harrison SC (1992) The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex. Cell 71: 1223-1237
-
(1992)
Cell
, vol.71
, pp. 1223-1237
-
-
Ellenberger, T.E.1
Brandi, C.J.2
Struhl, K.3
Harrison, S.C.4
-
9
-
-
0032968759
-
Conserved transactivation domain shared by interferon regulatory factors and Smad morphogens
-
Eroshkin A, Mushegian A (1999) Conserved transactivation domain shared by interferon regulatory factors and Smad morphogens. J Mol Med 77: 403-405
-
(1999)
J Mol Med
, vol.77
, pp. 403-405
-
-
Eroshkin, A.1
Mushegian, A.2
-
10
-
-
18744377964
-
Crystal structure of PU.1/IRF-4/DNA ternary complex
-
Escalante CR, Brass AL, Pongubala JM, Shatova E, Shen L, Singh H, Aggarwal AK (2002) Crystal structure of PU.1/IRF-4/DNA ternary complex. Mol Cell 10: 1097-1105
-
(2002)
Mol Cell
, vol.10
, pp. 1097-1105
-
-
Escalante, C.R.1
Brass, A.L.2
Pongubala, J.M.3
Shatova, E.4
Shen, L.5
Singh, H.6
Aggarwal, A.K.7
-
11
-
-
0031933646
-
Structure of IRF-1 with bound DNA reveals determinants of interferon regulation
-
Escalante CR, Yie J, Thanos D, Aggarwal AK (1998) Structure of IRF-1 with bound DNA reveals determinants of interferon regulation. Nature 391: 103-106
-
(1998)
Nature
, vol.391
, pp. 103-106
-
-
Escalante, C.R.1
Yie, J.2
Thanos, D.3
Aggarwal, A.K.4
-
12
-
-
0034122095
-
Assembly of a functional beta interferon enhanceosome is dependent on ATF-2/c-Jun heterodimer orientation
-
Falvo JV, Parekh BS, Lin CH, Fraenkel E, Maniatis T (2000) Assembly of a functional beta interferon enhanceosome is dependent on ATF-2/c-Jun heterodimer orientation. Mol Cell Biol 20: 4814-4825
-
(2000)
Mol Cell Biol
, vol.20
, pp. 4814-4825
-
-
Falvo, J.V.1
Parekh, B.S.2
Lin, C.H.3
Fraenkel, E.4
Maniatis, T.5
-
13
-
-
0029619641
-
Reversal of intrinsic DNA bends in the IFN beta gene enhancer by transcription factors and the architectural protein HMG I(Y)
-
Falvo JV, Thanos D, Maniatis T (1995) Reversal of intrinsic DNA bends in the IFN beta gene enhancer by transcription factors and the architectural protein HMG I(Y). Cell 83: 1101-1111
-
(1995)
Cell
, vol.83
, pp. 1101-1111
-
-
Falvo, J.V.1
Thanos, D.2
Maniatis, T.3
-
14
-
-
0033568642
-
Crystal structure of an IRF-DNA complex reveals novel DNA recognition and cooperative binding to a tandem repeat of core sequences
-
Fujii Y, Shimizu T, Kusumoto M, Kyogoku Y, Taniguchi T, Hakoshima T (1999) Crystal structure of an IRF-DNA complex reveals novel DNA recognition and cooperative binding to a tandem repeat of core sequences. EMBO J 18: 5028-5041
-
(1999)
EMBO J
, vol.18
, pp. 5028-5041
-
-
Fujii, Y.1
Shimizu, T.2
Kusumoto, M.3
Kyogoku, Y.4
Taniguchi, T.5
Hakoshima, T.6
-
15
-
-
0028894384
-
Crystal structure of the heterodimeric bZIP transcription factor c-Fos/c-Jun bound to DNA
-
Glover JN, Harrison SC (1995) Crystal structure of the heterodimeric bZIP transcription factor c-Fos/c-Jun bound to DNA. Nature 373: 257-261
-
(1995)
Nature
, vol.373
, pp. 257-261
-
-
Glover, J.N.1
Harrison, S.C.2
-
16
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47: 110-119
-
(1991)
Acta Crystallogr A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
17
-
-
0029563634
-
Crystal structure of a bZIP/ DNA complex at 2.2 Å: Determinants of DNA specific recognition
-
Keller W, Konig P, Richmond TJ (1995) Crystal structure of a bZIP/ DNA complex at 2.2 Å: determinants of DNA specific recognition. J Mol Biol 254: 657-667
-
(1995)
J Mol Biol
, vol.254
, pp. 657-667
-
-
Keller, W.1
Konig, P.2
Richmond, T.J.3
-
18
-
-
0030025170
-
OcM POU domain-DNA interactions: Cooperative binding of isolated subdomains and effects of covalent linkage
-
Klemm JD, Pabo CO (1996) OcM POU domain-DNA interactions: cooperative binding of isolated subdomains and effects of covalent linkage. Genes Dev 10: 27-36
-
(1996)
Genes Dev
, vol.10
, pp. 27-36
-
-
Klemm, J.D.1
Pabo, C.O.2
-
19
-
-
0027377202
-
The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility
-
Konig P, Richmond TJ (1993) The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility. J Mol Biol 233: 139-154
-
(1993)
J Mol Biol
, vol.233
, pp. 139-154
-
-
Konig, P.1
Richmond, T.J.2
-
20
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24: 946-950
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
21
-
-
0024058085
-
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
-
Lavery R, Sklenar H (1988) The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J Biomol Struct Dyn 6: 63-91
-
(1988)
J Biomol Struct Dyn
, vol.6
, pp. 63-91
-
-
Lavery, R.1
Sklenar, H.2
-
22
-
-
0033842515
-
Selective DNA binding and association with the CREB binding protein coactivator contribute to differential activation of alpha/beta interferon genes by Interferon regulatory factors 3 and 7
-
Lin R, Genin P, Mamane Y, Hiscott J (2000) Selective DNA binding and association with the CREB binding protein coactivator contribute to differential activation of alpha/beta interferon genes by Interferon regulatory factors 3 and 7. Mol Cell Biol 20: 6342-6353
-
(2000)
Mol Cell Biol
, vol.20
, pp. 6342-6353
-
-
Lin, R.1
Genin, P.2
Mamane, Y.3
Hiscott, J.4
-
23
-
-
0031893220
-
Virus-dependent phosphorylation of the IRF-3 transcription factor regulates nuclear translocation, transactivation potential, and proteasome-mediated degradation
-
Lin R, Heylbroeck C, Pitha PM, Hiscott J (1998) Virus-dependent phosphorylation of the IRF-3 transcription factor regulates nuclear translocation, transactivation potential, and proteasome-mediated degradation. Mol Cell Biol 18: 2986-2996
-
(1998)
Mol Cell Biol
, vol.18
, pp. 2986-2996
-
-
Lin, R.1
Heylbroeck, C.2
Pitha, P.M.3
Hiscott, J.4
-
24
-
-
0032915860
-
Structural and functional analysis of interferon regulatory factor 3: Localization of the transactivation and autoinhibitory domains
-
Lin R, Mamane Y, Hiscott J (1999) Structural and functional analysis of interferon regulatory factor 3: localization of the transactivation and autoinhibitory domains. Mol Cell Biol 19: 2465-2474
-
(1999)
Mol Cell Biol
, vol.19
, pp. 2465-2474
-
-
Lin, R.1
Mamane, Y.2
Hiscott, J.3
-
25
-
-
0031574026
-
NUCPLOT: A program to generate schematic diagrams of protein-nucleic acid interactions
-
Luscombe NM, Laskowski RA, Thornton JM (1997) NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions. Nucleic Acids Res 25: 4940-4945
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4940-4945
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
26
-
-
0035971436
-
Partners in transcription: NFAT and AP-1
-
Macian F, Lopez-Rodriguez C, Rao A (2001) Partners in transcription: NFAT and AP-1. Oncogene 20: 2476-2489
-
(2001)
Oncogene
, vol.20
, pp. 2476-2489
-
-
Macian, F.1
Lopez-Rodriguez, C.2
Rao, A.3
-
27
-
-
0032841028
-
Interferon regulatory factors: The next generation
-
Mamane Y, Heylbroeck C, Genin P, Algarte M, Servant MJ, LePage C, DeLuca C, Kwon H, Lin R, Hiscott J (1999) Interferon regulatory factors: the next generation. Gene 237: 1-14
-
(1999)
Gene
, vol.237
, pp. 1-14
-
-
Mamane, Y.1
Heylbroeck, C.2
Genin, P.3
Algarte, M.4
Servant, M.J.5
LePage, C.6
DeLuca, C.7
Kwon, H.8
Lin, R.9
Hiscott, J.10
-
28
-
-
0032458247
-
Structure and function of the interferon-β enhanceosome
-
Maniatis T, Falvo JV, Kim TH, Kim TK, Lin CH, Parekh BS, Wathelet MG (1998) Structure and function of the interferon-β enhanceosome. Cold Spring Harb Symp Quant Biol 63: 609-620
-
(1998)
Cold Spring Harb Symp Quant Biol
, vol.63
, pp. 609-620
-
-
Maniatis, T.1
Falvo, J.V.2
Kim, T.H.3
Kim, T.K.4
Lin, C.H.5
Parekh, B.S.6
Wathelet, M.G.7
-
29
-
-
0033511709
-
The IFN-β enhancer: A paradigm for understanding activation and repression of inducible gene expression
-
Munshi N, Yie Y, Merika M, Senger K, Lomvardas S, Agalioti T, Thanos D (1999) The IFN-β enhancer: a paradigm for understanding activation and repression of inducible gene expression. Cold Spring Harb Symp Quant Biol 64: 149-159
-
(1999)
Cold Spring Harb Symp Quant Biol
, vol.64
, pp. 149-159
-
-
Munshi, N.1
Yie, Y.2
Merika, M.3
Senger, K.4
Lomvardas, S.5
Agalioti, T.6
Thanos, D.7
-
30
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A, Sharp KA, Honig B (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11: 281-296
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
31
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
32
-
-
0033602242
-
Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex
-
Passner JM, Ryoo HD, Shen L, Mann RS, Aggarwal AK (1999) Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex. Nature 397: 714-719
-
(1999)
Nature
, vol.397
, pp. 714-719
-
-
Passner, J.M.1
Ryoo, H.D.2
Shen, L.3
Mann, R.S.4
Aggarwal, A.K.5
-
33
-
-
0242574745
-
Crystal structure of IRF-3 reveals mechanism of autoinhibition and virus-induced phosphoactivation
-
Qin BY, Liu C, Lam SS, Srinath H, Delston R, Correia JJ, Derynck R, Lin K (2003) Crystal structure of IRF-3 reveals mechanism of autoinhibition and virus-induced phosphoactivation. Nat Struct Biol 10: 913-921
-
(2003)
Nat Struct Biol
, vol.10
, pp. 913-921
-
-
Qin, B.Y.1
Liu, C.2
Lam, S.S.3
Srinath, H.4
Delston, R.5
Correia, J.J.6
Derynck, R.7
Lin, K.8
-
34
-
-
0242658895
-
X-ray crystal structure of IRF-3 and its functional implications
-
Takahasi K, Suzuki NN, Horiuchi M, Mori M, Suhara W, Okabe Y, Fukuhara Y, Terasawa H, Akira S, Fujita T, Inagaki F (2003) X-ray crystal structure of IRF-3 and its functional implications. Nat Struct Biol 10: 922-927
-
(2003)
Nat Struct Biol
, vol.10
, pp. 922-927
-
-
Takahasi, K.1
Suzuki, N.N.2
Horiuchi, M.3
Mori, M.4
Suhara, W.5
Okabe, Y.6
Fukuhara, Y.7
Terasawa, H.8
Akira, S.9
Fujita, T.10
Inagaki, F.11
-
35
-
-
0029617947
-
Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome
-
Thanos D, Maniatis T (1995) Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome. Cell 83: 1091-1100
-
(1995)
Cell
, vol.83
, pp. 1091-1100
-
-
Thanos, D.1
Maniatis, T.2
-
37
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
Vagin A, Teplyakov A (1997) MOLREP: an automated program for molecular replacement. J Appl Crystallogr 30: 1022-1025
-
(1997)
J Appl Crystallogr
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
38
-
-
0032015647
-
Virus infection induces the assembly of coordinately activated transcription factors on the IFN-beta enhancer in vivo
-
Wathelet MG, Lin CH, Parekh BS, Ronco LV, Howley PM, Maniatis T (1998) Virus infection induces the assembly of coordinately activated transcription factors on the IFN-beta enhancer in vivo [published erratum appears in Mol Cell 1999 Jun;3(6):813]. Mol Cell 1: 507-518
-
(1998)
Mol Cell
, vol.1
, pp. 507-518
-
-
Wathelet, M.G.1
Lin, C.H.2
Parekh, B.S.3
Ronco, L.V.4
Howley, P.M.5
Maniatis, T.6
-
39
-
-
0032015647
-
-
published erratum appears Jun
-
Wathelet MG, Lin CH, Parekh BS, Ronco LV, Howley PM, Maniatis T (1998) Virus infection induces the assembly of coordinately activated transcription factors on the IFN-beta enhancer in vivo [published erratum appears in Mol Cell 1999 Jun;3(6):813]. Mol Cell 1: 507-518
-
(1999)
Mol Cell
, vol.3
, Issue.6
, pp. 813
-
-
-
40
-
-
0037213718
-
The IRF-2 DNA binding domain facilitates the activation of the class II transactivator (CIITA) type IV promoter by IRF-1
-
Xi H, Blanck G (2003) The IRF-2 DNA binding domain facilitates the activation of the class II transactivator (CIITA) type IV promoter by IRF-1. Mol Immunol 39: 677-684
-
(2003)
Mol Immunol
, vol.39
, pp. 677-684
-
-
Xi, H.1
Blanck, G.2
|