An Extreme case of plant-insect codiversification: Figs and fig-pollinating wasps

Systematic Biology

Volumn 61, Issue 6, 2012, Pages 1029-1047

  Cruaud, Astrid ^a   Ronsted, Nina ^b,c,d   Chantarasuwan, Bhanumas ^e   Chou, Lien Siang ^f   Clement, Wendy L ^c,g   Couloux, Arnaud ^h   Cousins, Benjamin ⁱ   Genson, Gwenaélle ^a   Harrison, Rhett D ^j   Hanson, Paul E ^k   Hossaert Mckey, Martine ^l   Jabbour Zahab, Roula ^a   Jousselin, Emmanuelle ^a   Kerdelhué, Carole ^a   Kjellberg, Finn ^l   Lopez Vaamonde, Carlos ^m   Peebles, John ⁿ   Peng, Yan Qiong ^j   Santinelo Pereira, Rodrigo Augusto ^o   Schramm, Tselil ⁿ   Ubaidillah, Rosichon ^p   Van Noort, Simon ^q   Weiblen, George D ^c   Yang, Da Rong ^j   Yodpinyanee, Anak ⁿ   Libeskind Hadas, Ran ⁿ   Cook, James M ^r   Rasplus, Jean Yves ^a   Savolainen, Vincent ^b,s   more..

^a CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

^b JODRELL LABORATORY   (United Kingdom)

^c UNIVERSITY OF MINNESOTA   (United States)

^d UNIVERSITY OF COPENHAGEN   (Denmark)

^e UNIVERSITEIT LEIDEN BRANCH   (Netherlands)

^f NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^g YALE UNIVERSITY   (United States)

^h CENTRE NATIONAL DE SÉQUENÇAGE   (France)

ⁱ CLEMSON UNIVERSITY   (United States)

^j XTBG   (China)

^k UNIVERSIDAD DE COSTA RICA   (Costa Rica)

^l CNRS   (France)

^m Inst Natl de la Rech Agronom   (France)

ⁿ HARVEY MUDD COLLEGE   (United States)

^o UNIVERSITY OF SÃO PAULO   (Brazil)

^p INDONESIAN INSTITUTE OF SCIENCES   (Indonesia)

^q Natural History Division   (South Africa)

^r UNIVERSITY OF READING   (United Kingdom)

^s IMPERIAL COLLEGE LONDON   (United Kingdom)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; BAYES THEOREM; CLASSIFICATION; FICUS; GENETICS; PHYLOGENY; PHYLOGEOGRAPHY; POLLINATION; SPECIES DIFFERENTIATION; SYMBIOSIS; WASP;

ANIMALS; BAYES THEOREM; FICUS; GENETIC SPECIATION; PHYLOGENY; PHYLOGEOGRAPHY; POLLINATION; SYMBIOSIS; WASPS;

AGAONIDAE; FICUS (ANGIOSPERM); HEXAPODA; HYMENOPTERA; MORACEAE;

EID: 84866181935     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/sys068     Document Type: Article

References (154)

1. Akhmetiev M.A., Beniamovski V.N. 2009. Paleogene floral assemblages around epicontinental seas and straits in Northern Central Eurasia: proxies for climatic and paleogeographic evolution. Geol. Acta 7:297-309.
2. Aldous D.J. 2001. Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today. Stat. Sci. 16:23-34.
3. Bell C.D., Soltis D.E., Soltis P.S. 2005. The age of the angiosperms: a molecular timescale without a clock. Evolution 59:1245-1258.
4. Berg C.C., Corner E.J.H. 2005. Moraceae Ficus. Flora Malesiana, Ser. I,17/2, Leiden.
5. Bergsten J. 2005. A review of long-branch attraction. Cladistics 21:163-193.
6. Brinkmann H., van der Giezen M., Zhou Y., Poncelin de Raucourt G., Philippe H. 2005. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst. Biol. 54:743-757.
7. Burnham R.J., Graham A. 1999. The history of Neotropical vegetation: New developments and status. Ann. Mo. Bot. Gard. 86:546-589.
8. Carpenter R.J., Truswell E.M., Harris W.K. 2010. Lauraceae fossils from a volcanic Palaeocene oceanic island, Ninetyeast Ridge, Indian Ocean: ancient long-distance dispersal? J. Biogeogr. 37: 1202-1213.
9. Charleston M.A. 2009. A new likelihood method for cophylogenetic analysis School of information technologies. Sydney: The University of Sydney.
10. Charleston M.A., Page R.D.M. 2002. TREEMAP (v2.0). Applications for Apple Macintosh. Oxford: University of Oxford.
11. Charleston N.A., Perkins S.L. 2006. Traversing the tangle: Algorithms and applications for cophylogenetic studies J. Biomed. Inform. 39:62-71.
12. Chen Y., Compton S.G., Liu M., Chen, X-Y. 2012. Fig trees at the northern limit of their range: the distributions of cryptic pollinators indicate multiple glacial refugia. Mol Ecol. 21:1687-1701.
13. Clement W.K., Weiblen G.D. 2009. Morphological evolution of the mulberry family (Moraceae). Syst. Bot. 34:530-552.
14. Clement W.L. 2008. Phylogeny and pollination ecology of Castilleae (Moraceae): Investigating the evolutionary history of the figs' closest relatives. Ph.D. thesis., St. Paul (MN): University of Minnesota.
15. Collinson M.E. 1989. The fossil history of the Moraceae, Urticaceae (including Cecropiaceae), and Cannabaceae. In: Crane P., Blackmore S., editors. Evolution, systematics, and fossil history of the Hamamelidae: higher Hamamelidae. Vol. 2. (Systematics Association Special Volumes). Oxford: Clarendon Press. p. 319-339.
16. Compton S.G., Ball A.D., Collinson M.E., Hayes P., Rasnitsyn A.P., Ross A.J. 2010. Ancient fig wasps indicate at least 34 Myr of stasis in their mutualism with fig trees. Biol. Lett. doi: 10.1098/rsbl.2010.0389.
17. Conow C., Fielder D., Ovadia Y., Libeskind-Hadas R. 2010. Jane: a new tool for the cophylogeny reconstruction problem. Algorithms Mol. Biol. 5:16.
18. Cook J.M., Rasplus J.-Y. 2003. Mutualists with attitude: coevolving fig wasps and figs. Trends Ecol. Evol. 18:241-248.
19. Cook J.M., Segar S.T. 2010. Speciation in fig wasps. Ecol. Entomol. 35:54-66.
20. Cornille A., Underhill J.G., Cruaud A., Hossaert-McKey M., Johnson S.D., Tolley K.A., Kjellberg F., van Noort S., Proffit M. 2012. Floral volatiles, pollinator sharing and diversification in the fig/wasp mutualism: insights from Ficus natalensis and its two wasp pollinators. Proc. R. Soc. Biol. Sci. Ser. B. 279:1731-1739.
21. Crisp M.D., Cook L.G. 2005. Do early branching lineages signify ancestral traits? Trends Ecol. Evol. 20:122-128.
22. Cruaud A., Cook J., Yang D.-R., Genson G., Jabbour-Zahab R., Kjellberg F., Pereira R.A.S., RønstedN., Santos O., Savolainen V., Ubaidillah R., van Noort S., Peng Y.-Q., RasplusJ.Y 2011a. Fig-fig wasp mutualism: the fall of the strict cospeciation paradigm? In: Patiny S., editor. Evolution of plant-pollinator relationships. Cambridge: Cambridge University Press.
23. Cruaud A., Jabbour-Zahab R., Genson G., Couloux A., Yan-Qiong P., Da Rong Y., Ubaidillah R., Pereira R.A.S., Kjellberg F., Van Noort S., Kerdelhué C., Rasplus J.-Y. 2011b. Out-of-Australia andback again: the worldwide historical biogeography of non-pollinating fig wasps (Hymenoptera: Sycophaginae).J. Biogeogr. 38:209-225.
24. Cruaud A., Jabbour-Zahab R., Genson G., Cruaud C., Couloux A., Kjellberg F., van Noort S., Rasplus J.-Y. 2010. Laying the foundations for a new classification of Agaonidae (Hymenoptera: Chalcidoidea), a multilocus phylogenetic approach. Cladistics 26:359-387
25. Cruaud A., Jabbour-Zahab R., Genson G., Ungricht S., Rasplus J.Y. 2012. Testing the emergence of New Caledonia: fig wasp mutualism as a case study and a review of evidence. PLoS ONE 7:e30941.
26. Cummings M.P., Handley S.A., Myers D.S., Read D.L., Rokas A., Winka K. 2003. Comparing bootstrap and posterior probability values in the four-taxon case. Syst. Biol. 52:477-487
27. Datwyler S.L., Weiblen G.D. 2004. On the origin of the fig: phylogenetic relationships of Moraceae from ndhF sequences. Am. J. Bot. 91: 767-777.
28. Davis C.C., Bell C.D., Mathews S., Donoghue M.J. 2002. Laurasian migration explains Gondwanan disjunctions: evidence from Malpighiaceae. Proc. Natl. Acad. Sci. U.S.A. 99:6833-6837
29. Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Heled, J., Kearse, M., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T., Wilson, A., 2007. Geneious v3.7 Available from http://www.geneious.com.
30. Drummond A.J., Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214-221.
31. Ehrlich P.R., Raven P.H. 1964. Butterflies and plant: a study in coevolution. Evolution 18:586-608.
32. Emshwiller E., Doyle J.J. 1999. Chloroplast-expressed glutamine synthetase (ncpGS): Potential utility for phylogenetic studies with an example from Oxalis (Oxalidaceae). Mol. Phylogenet. Evol. 12:310-319.
33. Erasmus C., van Noort S., Jousselin E., Greef J. 2007. Molecular phylogeny of fig wasps pollinators (Agaonidae, Hymenoptera) of Ficus section Galoglychia. Zool. Scr. 36:61-78.
34. Erixon P., Svennblad B., Britton T., Oxelman B. 2003. Reliability of bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst. Biol. 52:665-673.
35. Evans R.C., Alice L.A., Campbell C.S., Kellogg E.A., Dickinson TA. 2000. The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility. Mol. Phylogenet. Evol. 17:388-400.
36. Felsenstein J., Kishino H. 1993. Is there something wrong with the bootstrap on phylogenies? A repply to Hillis and Bull. Syst. Biol. 42:193-200.
37. Fordyce J.A. 2010. Host shifts and evolutionary radiations ofbutterflies. Proc. R. Soc. Biol. Sci. Ser. B 277:3735-3743.
38. Galil J., Eisikowitch D. 1968. On the pollination ecology of Ficus sycomorus in East Africa. Ecology 49:259-269.
39. Galil J., Neeman G. 1977. Pollen transfer and pollination common fig (Ficus carica L.). New Phytol. 79:163-171.
40. Gibson G.A.P., Heraty J.M., Woolley J.B. 1999. Phylogenetics and classification of Chalcidoidea and Mymarommatoidea a review of current concepts (Hymenoptera, Apocripta). Zool. Scr. 28:87-124.
41. Gillespie J.J., Johnston J.S., Cannone J.J., Gutell R.R. 2006. Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization and retrotransposable elements. Insect Mol. Biol. 15:657-686.
42. Goloboff P.A., Farris J.S., Nixon K.C. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24:1-13.
43. Greeff J., van Noort S., Rasplus J.-Y., Kjellberg F. 2003. Dispersal and fighting in male pollinating fig wasps. C. R. Biol. 326:121-130.
44. Grimaldi D.A. 1994. The age of Dominican amber. In: Anderson K.B., Crelling J.C. (Eds.), Amber, resinite, and fossil resins. American Chemical Society, Washington D.C, pp. 203-217.
45. Grison-Pige L., Hossaert-McKey M., Greeff J.M., Bessiere J.M. 2002. Fig volatile compounds a first comparative study. Phytochemistry (Oxf.) 61:61-71.
46. Gu X. 1995. Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol. Biol. Evol. 12: 546-557.
47. Haine E.R., Martin J., Cook J.M. 2006. Deep mtDNA divergences indicate cryptic species in a fig-pollinating wasp. BMC Evol. Biol. 6:83.
48. Hall R. 2002. Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: computer-based reconstructions, model and animations. J. Asian Earth Sci. 20:353-431.
49. Herre E.A., Jander K.C., Machado C.A. 2008. Evolutionary ecology of figs and their associates: recent progress and outstanding puzzles. Annu. Rev. Ecol. Evol. Syst. 39:439-458.
50. Herre E.A., Machado C.A., Bermingham E., Nason J.D., Windsor D.M., McCafferty S., Van Houten W., Bachmann K. 1996. Molecular phylogenies of figs and their pollinator wasps. J. Biogeogr. 23:521-530.
51. Hossaert-McKey M., Giberneau M., Frey J.E. 1994. Chemosensory attraction of fig wasps to substances produced by receptive figs. Entomol. Exp. Appl. 70:185-191.
52. Howe H.F., Smallwood J. 1982. Ecology of seed dispersal. Annu. Rev. Ecol. Syst. 13:201-228.
53. Huelsenbeck J.P., Ronquist F. 2001. MrBayes: Bayesian inferences of phylogeny Bioinformatics 17:754-755.
54. Iturralde-Vinent M.A., MacPhee R.D.E. 1996. Age and paleogeographical origin of Dominican amber. Science 273:1850-1852.
55. Iturralde-Vinent M.A., MacPhee R.D.E. 1999. Paleogeography of the Caribbean region: Implications for cenozoic biogeography Bull. Am. Mus. Nat. Hist. 238:1-95.
56. Jackson A.P. 2004. Cophylogeny of the Ficus microcosm. Biol. Rev. (Camb.) 79:751-768.
57. Jackson A.P., Machado C.A., Robbins N., Herre E.A. 2008. Multilocus phylogenetic analysis of neotropical figs does not support co-speciation with the pollinators: The importance of systematic scale in fig-wasp cophylogenetic studies. Symbiosis 45:57-72.
58. Jandér K.C., Herre E.A. 2010. Host sanctions and pollinator cheating in the fig tree-fig wasp mutualism. Proc. R. Soc. B Biol. Sci. 277:14811488.
59. Janzen D.H. 1979. How to be a fig. Annu. Rev. Ecol. Syst. 10:13-51.
60. Jousselin E., Desdevises Y., Coeur dAcier A. 2009. Fine-scale cospeciationbetween Brachycaudus and Buchnera aphidicola: bacterial genome helps define species and evolutionary relationships in aphids. Proc. R. Soc. Biol. Sci. Ser. B 276:187-196.
61. Jousselin E., Rasplus J.Y., Kjellberg F. 2003. Convergence and coevolution in a mutualism evidence from a molecular phylogeny of Ficus. Evolution 57:1255-1272.
62. Jousselin E., van Noort S., Rasplus J.Y., Rønsted N., Erasmus C., Greeff J. 2008. One tree to bind them all: host conservatism in a fig wasp community unraveled by cospeciation analyses among pollinating and nonpollinating fig wasps. Evolution 62:1777-1797
63. Källersjö M., Albert V.A., Farris J.S. 1999. Homoplasy increases phylogenetic structure. Cladistics 15:91-93.
64. Kawakita A., Kato M. 2009. Repeated independent evolution of obligate pollination mutualism in the Phyllantheae-Epicephala association. Proc. R. Soc. Biol. Sci. Ser. B 276:417-426.
65. Kerdelhué C., Hochberg M., Rasplus J.Y. 1997. Active pollination of Ficus sur by two sympatric fig wasp species in West Africa. Biotropica 29:69-75.
66. Kjellberg F., Jousselin E., Bronstein J.L., Patel A., Yokoyama J., Rasplus J.Y. 2001. Pollination mode in fig wasps: the predictive power of correlated traits. Proc. R. Soc. Biol. Sci. Ser. B 268:1113-1121.
67. Krell F.-T., Cranston P.S. 2004. Which side of the tree is more basal? Syst. Entomol. 29:279-281.
68. Lamm K.S., Redelings B.D. 2009. Reconstructing ancestral ranges in historical biogeography: properties and prospects. J. Syst. Evol. 47:369-382.
69. Leebens-Mack J., Raubeson L.A., Cui L., Kuehl J.V., Fourcade M.H., Chumley T.W., Boore J.L., Jansen R.K., dePamphilis C.W. 2005. Identifying the basal angiosperm node in chloroplast genome phylogenies: Sampling one's way out of the Felsenstein zone. Mol. Biol. Evol. 22:1948-1963.
70. Legendre P., Desdevises Y., Bazin E. 2002. A statistical test for hostparasite coevolution. Syst. Biol. 51:217-234.
71. Lemmon A.R., Brown J.M., Stanger-Hall K., Lemmon E.M. 2009. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Syst. Biol. 58:130-145.
72. Libeskind-Hadas R., Charleston M.A. 2009. On the computational complexity of the reticulate cophylogeny reconstruction problem. J. Comput. Biol. 16:105-117
73. Lopez-Vaamonde C., Cook J.M., Rasplus J.-Y., Machado C.A., Weiblen G. 2009. Molecular dating and biogeography of fig-pollinating wasps. Mol. Phylogenet. Evol. 52:715-726.
74. Lopez-Vaamonde C., Dixon D.J., Cook J., Rasplus J.Y. 2002. Revision of the Australian species of Pleistodontes (Hymenoptera: Agaonidae) fig-pollinating wasps and their host plant associations. Zool. J. Linn. Soc. 136:637-683.
75. Machado C.A., Herre E.A., McCafferty S., Bermingham E. 1996. Molecular phylogenies of fig pollinating and non-pollinating wasps and the implications for the origin and evolution of the fig-fig wasp mutualism. J. Biogeogr. 23:531-542.
76. Machado C.A., Jousselin E., Kjellberg F., Compton S., Herre E.A. 2001. Phylogenetic relationships, historical biogeography and character evolution of fig-pollinating wasps. Proc. R. Soc. Biol. Sci. Ser. B 268:685-694.
77. Machado C.A., Robbins N., Gilbert M.T.P., Herre E.A. 2005. Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism. Proc. Natl. Acad. Sci. U.S.A. 102: 6558-6565.
78. Maddison W.P., Maddison D.R. 2008. Mesquite: a modular system for evolutionary analysis: Available from: URL http://mesquiteproject.org.
79. Marshall D.C., Simon C., Buckley T.R. 2006. Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors. Syst. Biol. 55:993-1003.
80. Marussich W.A., Machado C.A. 2007. Host-specificity and coevolution among pollinating and nonpollinating New World fig wasps. Mol. Ecol. 16:1925-1946.
81. Mason-Gamer R., Weil C.F., Kellogg E.A. 1999. Granule-bound starch synthase: Structure, function and phylogenetic utility. Mol. Biol. Evol. 15:1658-1673.
82. McDougall I. 1971. The geochronology and evolution of the young volcanic island of Reunion, Indian Ocean. Geochim. Cosmochim. Ac 35:261-288.
83. McDougallI., Chamalaun F.H. 1969. Isotopic dating and geomagnetic polarity studies on volcanic rocks from Mauritius, Indian Ocean. Geol. Soc. Am. Bull. 80:1419-1442.
84. McGuire J.A., Witt C.C., Altshuler D.L., Remsen J.V.J. 2007. Phylogenetic systematics and biogeography of hummingbirds: bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy Syst. Biol. 56:837-856.
85. McKenna D.D., Sequeira A.S., Marvaldi A.E., Farrell B.D. 2009. Temporal lags and overlap in diverisfication of weevils and flowering plants. Proc. Natl. Acad. Sci. U.S.A. 106:7083-7088.
86. McLeish M., van Noort S. 2012. Codivergence and multiple host species use by fig wasp populations of the Ficus pollination mutualism. BMC Evol. Biol. 12:1.
87. Meier-Kolthoff J.P., Auch A.F., Huson D.H., Goker M. 2007. CopyCat: cophylogenetic analysis tool. Bioinformatics 23:898-900.
88. Merkle D., Middendorf M. 2005. Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information. Theory Biosci. 123:277-299.
89. Michaloud G., Carrière S., Kobbi M. 1996. Exceptions to the one:one relationship between African fig trees and their fig wasp pollinators : possible evolutionary scenarios. J. Biogeogr. 23:513-520.
90. Michaloud G., Michaloud-Pelletier S., Wiebes J.T., Berg C.C. 1985. The co-occurrence of two pollinating species of fig wasp on one species of fig. Proc. K. Ned. Akad. Wet. Ser. C Biol. Med. Sci. 88:93-119.
91. Moe A.M., Weiblen G.D. 2010. Molecular divergence in allopatric Ceratosolen (Agaonidae) pollinators of geographically widespread Ficus (Moraceae) species. Ann. Entomol. Soc. Am. 103: 1025-1037.
92. Molbo D., Machado C.A., Sevenster J.G., Keller L., Herre E.A. 2003. Cryptic species of fig-pollinating wasps: Implications for the evolution of the fig-wasp mutualism, sex allocation, and precision of adaptation. Proc. Natl. Acad. Sci. U.S.A. 100: 5967-5872.
93. Moran N.A. 2001. The coevolution of bacterial endosymbionts and phloem-feeding insects. Ann. Mo. Bot. Gard. 88:35-44.
94. Munro J.B., Heraty J.M., Burks R.A., Hawks D., Mottern J., Cruaud A., Rasplus J.Y., Jansta P. 2011. A molecular phylogeny of the Chalcidoidea (Hymenoptera). PLoS ONE 6, e27023.
95. Novotny V., Basset Y., Miller S. E., Weiblen G. D., Bremer B., Cizek L., Drozd P. 2002. Low host specificity of herbivorous insects in a tropical forest. Nature 416:841-8444.
96. Nylander J.A.A. 2004. MrAIC.pl. Program distributed by the author., Upssala: Evolutionary Biology Centre, Uppsala University
97. Nylander J.A.A., Ronquist F., HuelsenbeckJ.P, Nieves-Aldrey J.L. 2004. Bayesian phylogenetic analysis of combined data. Syst. Biol. 53: 47-67.
98. Nylander J.A.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. 2008. AWTY (are we there yet?): a system for grafical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24:581-584.
99. Otto-Bliesner B.L., Upchurch G.R. 1997. Vegetation-induced warming of high-latitude regions during the Late Cretaceous period. Nature 385:804-807
100. Ovadia Y., Fielder D., Conow C., Libeskind-Hadas R. 2011. The cophylogeny reconstruction problem is NP-complete. J. Comput. Biol. 18:59-65.
101. Page R.D.M. 1994. Parallel phylogenies reconstructing the history of host-parasite assemblages. Cladistics 10:155-173.
102. Page R.D.M., Charleston M.A. 1998. Trees within trees: phylogeny and historical associations. Trends Ecol. Evol. 13:356-359.
103. Paradis E., Claude J., Strimmer K. 2004. APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289-290.
104. Penalver E., Engel M.S., Grimaldi D.A. 2006. Fig wasps in Dominican amber (Hymenoptera: Agaonidae). Am. Mus. Novit. 3541: 1-16.
105. Percy D.M., Page R.D.M., Cronk Q.C.B. 2004. Plant-insect interactions: double-dating associated insect and plant lineages reveals asynchronous radiations. Syst. Biol. 53: 120-127
106. Philippe H., Brinkmann H., Lavrov D.V., Littlewood D.T.J., Manuel M., Wörheide G., Baurain D. 2011. Resolving difficult phylogenetic questions: why more sequences are not enough. PLoS Biol. 9, e1000602.
107. Philippe H., Delsuc F., Brinkmann H., Lartillot N. 2005. Phylogenomics. Annu. Rev. Ecol. Evol. Syst. 36:541-562.
108. Phillips M.J., Gibb G.C., Crimp E.A., Penny D. 2010. Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites. Syst. Biol. 59:90-107
109. Phillips M.J., Penny D. 2003. The root of the mammalian tree inferred from whole mitochondrial genomes. Mol. Phylogenet. Evol. 28: 171-185.
110. Poinar O.G.J. 1993. Insects in amber. Annu. Rev. Entomol. 46:145-159.
111. Pol D., Siddall M.E. 2001. Biases in maximum likelihood and parsimony: a simulation approach to a 10-taxon case. Cladistics 17:266-281.
112. Poole I., Mennega A.M.W., Cantrill D.J. 2003. Valdivian ecosystems in the Late Cretaceous and Early Tertiary of Antarctica: further evidence from myrtaceous and eucryphiaceous fossil wood Rev. Palaeobot. Palynol. 124:9-27
113. Ramirez W.B. 1974. Co-evolution of Ficus and Agaonidae. Ann. Mo. Bot. Gard. 61:770-780.
114. Ramirez W.B. 1978. Evolution of mechanisms to carry pollen in Agaonidae (Hymenoptera Chalcidoidea). Tijdschr. Entomol. 121:279-293.
115. Rasplus J.Y. 1996. The one-to-one species-specificity of the FicusAgaoninae mutualism : how casual? In: van der Maesen L.J.G., van der Burgt X.M., van Medenbach de Rooy J.M., editors. The Biodiversity of African plants. Wageningen: Kluwer Academic Publishers. p. 639-649.
116. Ree R.H., Smith S.A. 2008. Maximum-likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 57:4-14.
117. Renoult J.P., Kjellberg F., Grout C., Santoni S., Khadari B. 2009. Cytonuclear discordance in the phylogeny of Ficus section Galoglychia and host shifts in plant-pollinator associations. BMC Evol. Biol. 9:248.
118. Rønsted N, Weiblen G., Clement W.L., Zerega N.J.C., Savolainen V. 2008. Reconstructing the phylogeny of figs (Ficus, Moraceae) to reveal the history of the fig pollination mutualism. Symbiosis 45:45-55.
119. Rønsted N., Weiblen G.D., Cook J.M., Salamin N, Machado C.A., Savolainen P. 2005.60 million years of co-divergence in the fig-wasp symbiosis. Proc. R. Soc. Biol. Sci. Ser. B 272:2593-2599.
120. Rønsted N, Yektaei-Karin E., Turk K., Clarkson J.J., Chase M.W. 2007. Species-level phylogenetics of large genera: prospects of studying co-evolution and polyploidy. In: Hodkinson T., Parnell J., Waldren S., editors. Reconstructing the tree of life: taxonomy and systematics of species rich taxa. Systematic Association Series. New York: CRC Press.
121. Savolainen V., Chase M.W., Salamin N., Soltis D.E., Soltis P.S., López A., Fédrigo O., Naylor G.J.P. 2002. Phylogeny reconstruction and functional constraints in organellar genomes: plastid atpB and rbcL sequences versus animal mitochondrion. Syst. Biol. 51: 638-647
122. Shanahan M., So S., Compton S., Corlett R. 2001. Fig-eating by vertebrate frugivores: a global review. Biol. Rev. Camb. Philos. Soc. 76:529-570.
123. Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51:492-508.
124. Shimodaira H., Hasegawa M. 1999. Multiple comparisons of loglikelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
125. Shimodaira H., Hasegawa M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247
126. Silvieus S.I., Clement W.L., Weiblen G.D. 2008. Cophylogeny of figs, pollinators, gallers and parasitoids. In: Tilmon K.J., editor. Specialization, speciation, and radiation: the evolutionary biology of herbivorous insects. Berkeley (CA): University of California Press. p.225-239.
127. Simmons M.P., Pickett K.M., Miya M. 2004. How meaningful are Bayesian support values? Mol. Biol. Evol. 21:188-199.
128. Smith C.I., Pellmyr O., Althoff D.M., Balcazar-Lara M., LeebensMack J., Segraves K.A. 2008. Pattern and timing of diversification in Yucca (Agavaceae): specialized pollination does not escalate rates of diversification. Proc. R. Soc. Biol. Sci. Ser. B 275: 249-258.
129. Soltis D.E., Soltis P.S. 2004. Amborella not a "basal angiosperm"? Not so fast. Am. J. Bot. 91:997-1001.
130. Stamatakis A. 2006a. Phylogenetic models ofrate heterogeneity: A High Performance Computing Perspective. International Parallel and Distributed Processing Symposium (IPDPS 2006), Rhodes Island, Greece, 8 pp.
131. Stamatakis A. 2006b. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
132. Stefanovié S., Rice D.W., Palmer J.D. 2004. Longbranch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? BMC Evol. Biol. 4:35.
133. Suzuki Y., Glazko G.V., Nei M. 2002. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc. Natl. Acad. Sci. U. S. A. 99:16138-16143.
134. Tamura K., Dudley J., Nei M., Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
135. Thompson J.D., Higgins D.G., Gibson J.T. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignement through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
136. Tiffney B.H. 1985. The Eocene North Atlantic land bridge: its importance in tertiary and modern phytogeography of the Northern hemisphere. J. Arnold Arboretum 66:243-273.
137. Tilmon K.J. 2008. Specialisation, speciation, and radiation: the evolutionary biology of herbivorous insects. Berkeley (CA): University of California Press.
138. van Noort S., Compton S.G. 1996. Convergent evolution of Agaoninae and Sycoecinae (Agaonidae, Chalcidoidea) head shape in response to the constraints of host fig morphology J. Biogeogr. 23:415-424.
139. Weiblen G.D. 2000. Phylogenetic relationships of functionally dioecious Ficus (Moraceae) based on ribosomal DNA sequences and morphology. Am. J. Bot. 87:1342-1357.
140. Weiblen G.D. 2001. Phylogenetic relationships of fig wasps pollinating functionally dioecious Ficus based on mitochondrial DNA sequences and morphology. Syst. Biol. 50:243-267
141. Weiblen G.D. 2002. How to be a fig wasp ? Annu. Rev. Entomol. 47: 299-330.
142. Weiblen G.D. 2004. Correlated evolution in fig pollination. Syst. Biol. 53:128-139.
143. Weiblen G.D., Bush G.L. 2002. Speciation in fig pollinators and parasites. Mol. Ecol. 11:1573-1578.
144. Wiebes J.T. 1979. Co-evolution of figs and their insect pollinators. Annu. Rev. Ecol. Syst. 10:1-12.
145. Wiebes J.T. 1982a. Fig wasps (Hymenoptera). In: Gressitt J.L., editor. Biogeography and ecology of New Guinea. Monographiae Biologica. The Hague: Junk W p. 735-755.
146. Wiebes J.T. 1982b. The phylogeny of the Agaonidae (Hymenoptera, Chalcidoidea). Neth. J. Zool. 32:395-411.
147. Wiens J.J., Morrill M. 2011. Missing data in phylogenetic analysis: reconciling results from simulations and empirical data. Syst. Biol. 60:719-731.
148. Wilcox T.P., García de León F.J., Hendrickson D.A., Hillis D.M. 2004. Convergence among cave catfishes: long-branch attraction and a Bayesian relative rates test. Mol. Phylogenet. Evol. 31:1101-1113.
149. Wilf P., Little S.A., Iglesias A., Zamaloa M.D., Gandolfo M.A., Cuneo N.R., Johnson K.R. 2009. Papuacedrus (Cupressaceae) in Eocene Patagonia: A new fossil link to Australasian rainforests. Am. J. Bot. 96:2031-2047
150. Wilf P., Rubén Cúneo N., Johnson K.R., Hicks J.F., Wing S.L., Obradovich J.D. 2003. High plant diversity in Eocene South America: Evidence from Patagonia. Science 300:122-125.
151. Woese C.R., Achenbach L., Rouviere P., Mandelco L. 1991. Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts. Syst. Appl. Microbiol. 14:364-371.
152. Xu L., Harrison R.D., Yang P., Yang D.-R. 2011. New insight into the phylogenetic and biogeographic history of genus Ficus: Vicariance played a relatively minor role compared with ecological opportunity and dispersal. J. Syst. Evol. 49:546-557
153. Zachos J., Pagani M., Sloan L., Thomas E., Billups K. 2001. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292:686-693.
154. Zerega N.J.C., Clement W.L., Datwyler S.L., Weiblen G.D. 2005. Biogeography and divergence times in the mulberry family (Moraceae). Mol. Phylogenet. Evol. 37:402-416.