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Volumn 4, Issue , 2004, Pages 1-35

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

Author keywords

[No Author keywords available]

Indexed keywords

ACORUS; AMBORELLA; CALYCANTHUS; DICOTYLEDONEAE; EMBRYOPHYTA; LILIOPSIDA; MAGNOLIOPHYTA; NYMPHAEA; POACEAE;

EID: 10644253746     PISSN: 14712148     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2148-4-35     Document Type: Article
Times cited : (131)

References (91)
  • 1
    • 0033615479 scopus 로고    scopus 로고
    • The root of angiosperm phylogeny inferred from duplicate phytochrome genes
    • Mathews S, Donoghue MJ: The root of angiosperm phylogeny inferred from duplicate phytochrome genes. Science 1999, 286:947-950.
    • (1999) Science , vol.286 , pp. 947-950
    • Mathews, S.1    Donoghue, M.J.2
  • 2
    • 0033693754 scopus 로고    scopus 로고
    • Basal angiosperm phylogeny inferred from duplicate phytochromes A and C
    • Mathews S, Donoghue MJ: Basal angiosperm phylogeny inferred from duplicate phytochromes A and C. Int J Plant Sci 2000, 161:S41-S55.
    • (2000) Int J Plant Sci , vol.161
    • Mathews, S.1    Donoghue, M.J.2
  • 3
    • 0033576614 scopus 로고    scopus 로고
    • Multigene analyses identify the three earliest lineages of extant flowering plants
    • Parkinson CL, Adams KL, Palmer JD: Multigene analyses identify the three earliest lineages of extant flowering plants. Curr Biol 1999, 9:1485-1488.
    • (1999) Curr Biol , vol.9 , pp. 1485-1488
    • Parkinson, C.L.1    Adams, K.L.2    Palmer, J.D.3
  • 6
    • 0033604619 scopus 로고    scopus 로고
    • Angiosperm phylogeny inferred from multiple genes as a research tool for comparative biology
    • Soltis PS, Soltis DE, Chase MW: Angiosperm phylogeny inferred from multiple genes as a research tool for comparative biology. Nature 1999, 402:402-404.
    • (1999) Nature , vol.402 , pp. 402-404
    • Soltis, P.S.1    Soltis, D.E.2    Chase, M.W.3
  • 7
    • 0033724755 scopus 로고    scopus 로고
    • Basal lineages of angiosperms: Relationships and implications for floral evolution
    • Soltis PS, Soltis DE, Zanis MJ, Kim S: Basal lineages of angiosperms: relationships and implications for floral evolution. Am J Bot 2000, 161:S97-S107.
    • (2000) Am J Bot , vol.161
    • Soltis, P.S.1    Soltis, D.E.2    Zanis, M.J.3    Kim, S.4
  • 9
    • 0033666273 scopus 로고    scopus 로고
    • Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
    • Graham SW, Olmstead RG: Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms. Am J Bot 2000, 87:1712-1730.
    • (2000) Am J Bot , vol.87 , pp. 1712-1730
    • Graham, S.W.1    Olmstead, R.G.2
  • 10
  • 11
    • 0037594762 scopus 로고    scopus 로고
    • Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms
    • Borsch T, Hilu K, Quandt D, Wilde V, Neinhuis C, Barthlott W: Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms. J Evol Biol 2003, 16:558-576.
    • (2003) J Evol Biol , vol.16 , pp. 558-576
    • Borsch, T.1    Hilu, K.2    Quandt, D.3    Wilde, V.4    Neinhuis, C.5    Barthlott, W.6
  • 15
    • 1942453339 scopus 로고    scopus 로고
    • The sequence of the largest subunit of RNA polymerase II is a useful marker for inferring seed plant phylogeny
    • Nickerson J, Drouin G: The sequence of the largest subunit of RNA polymerase II is a useful marker for inferring seed plant phylogeny. Mol Phylogenet Evol 2004, 31:403-415.
    • (2004) Mol Phylogenet Evol , vol.31 , pp. 403-415
    • Nickerson, J.1    Drouin, G.2
  • 16
    • 1542405308 scopus 로고    scopus 로고
    • Evolution of the APETALA3 and PISTILLATA lineages of MADS-box-containing genes in the basal angiosperms
    • Stellari GM, Jaramillo MA, Kramer EM: Evolution of the APETALA3 and PISTILLATA lineages of MADS-box-containing genes in the basal angiosperms. Mol Biol Evol 2004, 21:506-519.
    • (2004) Mol Biol Evol , vol.21 , pp. 506-519
    • Stellari, G.M.1    Jaramillo, M.A.2    Kramer, E.M.3
  • 17
    • 3242666025 scopus 로고    scopus 로고
    • Phylogeny and divergence of basal angiosperms inferred from APETALA3- and PISTILLATA-like MADS-box genes
    • Aoki S, Uehara K, Imafuku M, Hasebe M, Ito M: Phylogeny and divergence of basal angiosperms inferred from APETALA3- and PISTILLATA-like MADS-box genes. J Plant Res 2004, 117:229-244.
    • (2004) J Plant Res , vol.117 , pp. 229-244
    • Aoki, S.1    Uehara, K.2    Imafuku, M.3    Hasebe, M.4    Ito, M.5
  • 19
    • 0041834716 scopus 로고    scopus 로고
    • Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm
    • Goremykin VV, Hirsch-Ernst KI, Wölfl S, Hellwig FH: Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm. Mol Biol Evol 2003, 20:1499-1505.
    • (2003) Mol Biol Evol , vol.20 , pp. 1499-1505
    • Goremykin, V.V.1    Hirsch-Ernst, K.I.2    Wölfl, S.3    Hellwig, F.H.4
  • 20
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis DM: Inferring complex phylogenies. Nature 1996, 383:130-131.
    • (1996) Nature , vol.383 , pp. 130-131
    • Hillis, D.M.1
  • 21
    • 0032023889 scopus 로고    scopus 로고
    • Taxonomic sampling, phylogenetic accuracy, and investigator bias
    • Hillis DM: Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst Biol 1998, 47:3-8.
    • (1998) Syst Biol , vol.47 , pp. 3-8
    • Hillis, D.M.1
  • 22
    • 0032025857 scopus 로고    scopus 로고
    • Is it better to add taxa or characters to a difficult phylogenetic problem?
    • Graybeal A: Is it better to add taxa or characters to a difficult phylogenetic problem? Syst Biol 1998, 47:9-17.
    • (1998) Syst Biol , vol.47 , pp. 9-17
    • Graybeal, A.1
  • 23
    • 0036699885 scopus 로고    scopus 로고
    • Increased taxon sampling is advantageous for phylogenetic inference
    • Pollock DD, Zwickl DJ, McGuire JA, Hillis DM: Increased taxon sampling is advantageous for phylogenetic inference. Syst Biol 2002, 51:664-671.
    • (2002) Syst Biol , vol.51 , pp. 664-671
    • Pollock, D.D.1    Zwickl, D.J.2    McGuire, J.A.3    Hillis, D.M.4
  • 24
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl DJ, Hillis DM: Increased taxon sampling greatly reduces phylogenetic error. Syst Biol 2002, 51:588-598.
    • (2002) Syst Biol , vol.51 , pp. 588-598
    • Zwickl, D.J.1    Hillis, D.M.2
  • 25
    • 84989485246 scopus 로고
    • Major clades of angiosperms
    • Dahlgren R, Bremer K: Major clades of angiosperms. Cladistics 1985, 1:349-368.
    • (1985) Cladistics , vol.1 , pp. 349-368
    • Dahlgren, R.1    Bremer, K.2
  • 26
    • 0001234321 scopus 로고
    • Seed plant phylogeny and the origin of angiosperms: An experimental cladistic approach
    • Doyle JA, Donoghue MJ: Seed plant phylogeny and the origin of angiosperms: an experimental cladistic approach. Bot Rev 1986, 52:321-431.
    • (1986) Bot Rev , vol.52 , pp. 321-431
    • Doyle, J.A.1    Donoghue, M.J.2
  • 27
    • 0001392984 scopus 로고
    • Cladistics of the Spermatophyta
    • Loconte H, Stevenson DW: Cladistics of the Spermatophyta. Brittonia 1990, 42:197-211.
    • (1990) Brittonia , vol.42 , pp. 197-211
    • Loconte, H.1    Stevenson, D.W.2
  • 32
    • 0026469557 scopus 로고
    • Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants
    • Gaut BS, Muse SV, Clark WD, Clegg MT: Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants. J Mol Evol 1992, 35:292-303.
    • (1992) J Mol Evol , vol.35 , pp. 292-303
    • Gaut, B.S.1    Muse, S.V.2    Clark, W.D.3    Clegg, M.T.4
  • 33
    • 0035089871 scopus 로고    scopus 로고
    • A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa
    • Zhang LQ, Pond SK, Gaut BS: A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa. J Mol Evol 2001, 52:144-156.
    • (2001) J Mol Evol , vol.52 , pp. 144-156
    • Zhang, L.Q.1    Pond, S.K.2    Gaut, B.S.3
  • 34
    • 0030888864 scopus 로고    scopus 로고
    • Correlated rates of synonymous site evolution across plant genomes
    • Eyre-Walker A, Gaut BS, Felsenstein J: Correlated rates of synonymous site evolution across plant genomes. Mol Biol Evol 1997, 14:455-460.
    • (1997) Mol Biol Evol , vol.14 , pp. 455-460
    • Eyre-Walker, A.1    Gaut, B.S.2    Felsenstein, J.3
  • 35
    • 0034636037 scopus 로고    scopus 로고
    • Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers
    • Chaw SM, Parkinson CL, Cheng Y, Vincent TM, Palmer JD: Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers. Proc Natl Acad Sci U S A 2000, 97:4086-4091.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 4086-4091
    • Chaw, S.M.1    Parkinson, C.L.2    Cheng, Y.3    Vincent, T.M.4    Palmer, J.D.5
  • 36
    • 0036790003 scopus 로고    scopus 로고
    • Rooting phylogenetic trees with distant outgroups: A case study from the commelinoid monocots
    • Graham SW, Olmstead RG, Barrett SCH: Rooting phylogenetic trees with distant outgroups: A case study from the commelinoid monocots. Mol Biol Evol 2002, 19:1769-1781.
    • (2002) Mol Biol Evol , vol.19 , pp. 1769-1781
    • Graham, S.W.1    Olmstead, R.G.2    Barrett, S.C.H.3
  • 37
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J: Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 1978, 27:401-410.
    • (1978) Syst Zool , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 38
    • 0020933869 scopus 로고
    • Parsimony in systematics: Biological and statistical issues
    • Felsenstein J: Parsimony in systematics: biological and statistical issues. Annu Rev Ecol Syst 1983, 14:313-333.
    • (1983) Annu Rev Ecol Syst , vol.14 , pp. 313-333
    • Felsenstein, J.1
  • 39
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy MD, Penny D: A framework for the quantitative study of evolutionary trees. Syst Zool 1989, 38:296-309.
    • (1989) Syst Zool , vol.38 , pp. 296-309
    • Hendy, M.D.1    Penny, D.2
  • 40
    • 3042683994 scopus 로고    scopus 로고
    • The chloroplast genome of Nymphaea alba: Whole-genome analyses and the problem of identifying the most basal angiosperm
    • Goremykin VV, Hirsch-Ernst KI, Wölfl S, Hellwig FH: The chloroplast genome of Nymphaea alba: Whole-genome analyses and the problem of identifying the most basal angiosperm. Mol Biol Evol 2004, 21:1445-1454.
    • (2004) Mol Biol Evol , vol.21 , pp. 1445-1454
    • Goremykin, V.V.1    Hirsch-Ernst, K.I.2    Wölfl, S.3    Hellwig, F.H.4
  • 42
    • 0037393246 scopus 로고    scopus 로고
    • An update of the Phylogeny Group classification for the orders and families of flowering plants: APGII
    • Angiosperm Phylogeny Group (APG): An update of the Phylogeny Group classification for the orders and families of flowering plants: APGII. Bot J Linn Soc 2003, 141:399-436.
    • (2003) Bot J Linn Soc , vol.141 , pp. 399-436
  • 43
    • 10644220870 scopus 로고    scopus 로고
    • Monocot relationships: An overview
    • Chase MW: Monocot relationships: an overview. Am J Bot 2004, 91:1645-1655.
    • (2004) Am J Bot , vol.91 , pp. 1645-1655
    • Chase, M.W.1
  • 46
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Edited by Munro HN. New York: Academic Press
    • Jukes TH, Cantor CR: Evolution of protein molecules. In: Mammalian Protein Metabolism. Edited by Munro HN. New York: Academic Press; 1969:21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 47
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J: Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981, 17:368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 48
    • 0021716351 scopus 로고
    • Estimation of evolutionary distance between nucleotide sequences
    • Tajima F, Nei M: Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol 1984, 1:269-285.
    • (1984) Mol Biol Evol , vol.1 , pp. 269-285
    • Tajima, F.1    Nei, M.2
  • 49
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980, 16:111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 50
    • 0021581577 scopus 로고
    • Distance methods for inferring phylogenies - A justification
    • Felsenstein J: Distance methods for inferring phylogenies - a justification. Evolution 1984, 38:16-24.
    • (1984) Evolution , vol.38 , pp. 16-24
    • Felsenstein, J.1
  • 51
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T: Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 1985, 22:160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 52
    • 0001464973 scopus 로고
    • Estimation of evolutionary distances between homologous nucleotide sequences
    • Kimura M: Estimation of evolutionary distances between homologous nucleotide sequences. Proc Natl Acad Sci U S A 1981, 78:454-458.
    • (1981) Proc Natl Acad Sci U S A , vol.78 , pp. 454-458
    • Kimura, M.1
  • 53
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M: Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993, 10:512-526.
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 54
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C, Preparata G, Saccone C, Serio G: A new method for calculating evolutionary substitution rates. J Mol Evol 1984, 20:86-93.
    • (1984) J Mol Evol , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 55
  • 56
    • 43949153645 scopus 로고
    • Recovering a tree from the leaf colourations it generates under a Markov model
    • Steel MA: Recovering a tree from the leaf colourations it generates under a Markov model. App Math Lett 1994, 7:19-24.
    • (1994) App Math Lett , vol.7 , pp. 19-24
    • Steel, M.A.1
  • 57
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart PJ, Steel MA, Penny D, Hendy MD: Recovering evolutionary trees under a more realistic model of sequence evolution. Mol Biol Evol 1994, 11:605-612.
    • (1994) Mol Biol Evol , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Penny, D.3    Hendy, M.D.4
  • 58
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA: MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 59
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M: Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 1999, 16:1114-1116.
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 60
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites - Approximate methods
    • Yang ZH: Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites - approximate methods. J Mol Evol 1994, 39:306-314.
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.H.1
  • 61
    • 0029935637 scopus 로고    scopus 로고
    • Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
    • Lockhart P, Larkum A, Steel M, Waddell P, Penny D: Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis. Proc Natl Acad Sci U S A 1996, 93:1930-1934.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 1930-1934
    • Lockhart, P.1    Larkum, A.2    Steel, M.3    Waddell, P.4    Penny, D.5
  • 62
    • 0000031661 scopus 로고
    • Molecular Phylogenetics of the Magnoliidae: Cladistic Analyses of Nucleotide Sequences of the Plastid Gene rbcL
    • Qiu YL, Chase MW, Les DH, Parks CR: Molecular Phylogenetics of the Magnoliidae: Cladistic Analyses of Nucleotide Sequences of the Plastid Gene rbcL. Ann Mo Bot Gard 1993, 80:587-606.
    • (1993) Ann Mo Bot Gard , vol.80 , pp. 587-606
    • Qiu, Y.L.1    Chase, M.W.2    Les, D.H.3    Parks, C.R.4
  • 63
    • 0000002524 scopus 로고
    • Cladistic analysis of monocot families
    • Edited by Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ. Kew, UK: Royal Botanical Gardens
    • Stevenson DW, Loconte H: Cladistic analysis of monocot families. In: Monocotyledons: systematics and evolution. Edited by Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ. Kew, UK: Royal Botanical Gardens; 1995.
    • (1995) Monocotyledons: Systematics and Evolution
    • Stevenson, D.W.1    Loconte, H.2
  • 64
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang Z: Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol Evol 1996, 11:367-372.
    • (1996) Trends Ecol Evol , vol.11 , pp. 367-372
    • Yang, Z.1
  • 65
    • 0034818755 scopus 로고    scopus 로고
    • Taking variation of evolutionary rates between sites into account in inferring phylogenies
    • Felsenstein J: Taking variation of evolutionary rates between sites into account in inferring phylogenies. J Mol Evol 2001, 53:447-455.
    • (2001) J Mol Evol , vol.53 , pp. 447-455
    • Felsenstein, J.1
  • 66
    • 0035527383 scopus 로고    scopus 로고
    • Exploring among-site rate variation models in a maximum likelihood framework using empirical data: Effects of model assumptions on estimates of topology, branch lengths, and bootstrap support
    • Buckley T, Simon C, Chambers G: Exploring among-site rate variation models in a maximum likelihood framework using empirical data: Effects of model assumptions on estimates of topology, branch lengths, and bootstrap support. Syst Biol 2001, 50:67-86.
    • (2001) Syst Biol , vol.50 , pp. 67-86
    • Buckley, T.1    Simon, C.2    Chambers, G.3
  • 67
    • 0035527368 scopus 로고    scopus 로고
    • Maximum likelihood estimation of phylogenetic trees is consistent when substitution rates vary according to the invariable sites plus gamma distribution
    • Rogers JS: Maximum likelihood estimation of phylogenetic trees is consistent when substitution rates vary according to the invariable sites plus gamma distribution. Syst Biol 2001, 50:713-722.
    • (2001) Syst Biol , vol.50 , pp. 713-722
    • Rogers, J.S.1
  • 68
    • 4644250777 scopus 로고    scopus 로고
    • Amborella not a "basal angiosperm"? Not so fast
    • Soltis DE, Soltis PS: Amborella not a "basal angiosperm"? Not so fast. Am J Bot 2004, 91:997-1001.
    • (2004) Am J Bot , vol.91 , pp. 997-1001
    • Soltis, D.E.1    Soltis, P.S.2
  • 69
    • 10644262772 scopus 로고    scopus 로고
    • Gene sampling versus taxon sampling: Is Amborella (Amborellaceae) a sister group to all other extant angiosperms
    • Degtjareva TH, Samigullin DD, Sokoloff CM, Valiejo-Roman CM: Gene sampling versus taxon sampling: Is Amborella (Amborellaceae) a sister group to all other extant angiosperms. Botanichesky Zhurnal 2004, 6:896-907.
    • (2004) Botanichesky Zhurnal , vol.6 , pp. 896-907
    • Degtjareva, T.H.1    Samigullin, D.D.2    Sokoloff, C.M.3    Valiejo-Roman, C.M.4
  • 70
    • 34248352315 scopus 로고    scopus 로고
    • The utility of whole chloroplast genome sequencing for reconstructing deep nodes in plants with an example from basal angiosperms
    • Botanical Society of America
    • Jansen RK, dePamphilis CW, Raubeson L, Leebens-Mack J, McNeal JR, Cui L, Zhang Y, Wyman S, Boore J, Kuehl J: The utility of whole chloroplast genome sequencing for reconstructing deep nodes in plants with an example from basal angiosperms [abstract]. In: Botony 2004; Salt Lake City, Utah.Botanical Society of America; 2004 http://www.botanyconference.org/engine/search/index.php?func= detail&aid=308.
    • (2004) Botony 2004; Salt Lake City, Utah
    • Jansen, R.K.1    DePamphilis, C.W.2    Raubeson, L.3    Leebens-Mack, J.4    McNeal, J.R.5    Cui, L.6    Zhang, Y.7    Wyman, S.8    Boore, J.9    Kuehl, J.10
  • 71
    • 0034628615 scopus 로고    scopus 로고
    • Seed plant phylogeny: Demise of the anthophyte hypothesis?
    • Donoghue MJ, Doyle JA: Seed plant phylogeny: demise of the anthophyte hypothesis? Curr Biol 2000, 10:R106-R109.
    • (2000) Curr Biol , vol.10
    • Donoghue, M.J.1    Doyle, J.A.2
  • 72
    • 0034636023 scopus 로고    scopus 로고
    • Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers
    • Bowe L, Coat G, dePamphilis C: Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proc Natl Acad Sci U S A 2000, 97:4092-4097.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 4092-4097
    • Bowe, L.1    Coat, G.2    DePamphilis, C.3
  • 73
    • 0036800892 scopus 로고    scopus 로고
    • Phylogeny of seed plants based on evidence from eight genes
    • Soltis DE, Soltis PS, Zanis MJ: Phylogeny of seed plants based on evidence from eight genes. Am J Bot 2002, 89:1670-1681.
    • (2002) Am J Bot , vol.89 , pp. 1670-1681
    • Soltis, D.E.1    Soltis, P.S.2    Zanis, M.J.3
  • 74
    • 10644238478 scopus 로고    scopus 로고
    • Phylogenetic signal in nucleotide data from seed plants: Implications for resolving the seed plant tree of life
    • Burleigh JG, Mathews S: Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life. Am J Bot 2004, 91:1599-1613.
    • (2004) Am J Bot , vol.91 , pp. 1599-1613
    • Burleigh, J.G.1    Mathews, S.2
  • 75
    • 0029954125 scopus 로고    scopus 로고
    • Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: The phylogenetic significance of third-position transversions
    • Yoder AD, Vilgalys R, Ruvolo M: Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: the phylogenetic significance of third-position transversions. Mol Biol Evol 1996, 13:1339-1350.
    • (1996) Mol Biol Evol , vol.13 , pp. 1339-1350
    • Yoder, A.D.1    Vilgalys, R.2    Ruvolo, M.3
  • 76
    • 0001329538 scopus 로고    scopus 로고
    • Patterns of sequence evolution and implications for parsimony analysis of chloroplast DNA
    • Edited by Soltis DE, Soltis PS, Doyle JJ. Boston: Kluwer Academic Publishers
    • Olmstead RG, Reeves PA, Yen AC: Patterns of sequence evolution and implications for parsimony analysis of chloroplast DNA. In: Molecular systematics of plants II: DNA sequencing. Edited by Soltis DE, Soltis PS, Doyle JJ. Boston: Kluwer Academic Publishers; 1998:164-187.
    • (1998) Molecular Systematics of Plants II: DNA Sequencing , pp. 164-187
    • Olmstead, R.G.1    Reeves, P.A.2    Yen, A.C.3
  • 77
    • 0032420129 scopus 로고    scopus 로고
    • Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants
    • Källersjö M, Farris JS, Chase MW, Bremer B, Fay MF, Humphries CJ, Peterson G, Seberg O, Bremer K: Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants. Plant Syst Evol 1998, 213:259-287.
    • (1998) Plant Syst Evol , vol.213 , pp. 259-287
    • Källersjö, M.1    Farris, J.S.2    Chase, M.W.3    Bremer, B.4    Fay, M.F.5    Humphries, C.J.6    Peterson, G.7    Seberg, O.8    Bremer, K.9
  • 79
    • 0036699890 scopus 로고    scopus 로고
    • Phylogeny reconstruction and functional constraints in organellar genomes: Plastid atpB and rbcL sequences versus animal mitochondrion
    • Savolainen V, Chase MW, Salamin N, Soltis DE, Soltis PS, López A, Fédrigo O, Naylor GJP: Phylogeny reconstruction and functional constraints in organellar genomes: plastid atpB and rbcL sequences versus animal mitochondrion. Syst Biol 2002, 51:638-647.
    • (2002) Syst Biol , vol.51 , pp. 638-647
    • Savolainen, V.1    Chase, M.W.2    Salamin, N.3    Soltis, D.E.4    Soltis, P.S.5    López, A.6    Fédrigo, O.7    Naylor, G.J.P.8
  • 80
    • 0034069504 scopus 로고    scopus 로고
    • Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants
    • Sanderson MJ, Wojciechowski MF, Hu JM, Khan TS, Brady SG: Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants. Mol Biol Evol 2000, 17:782-797.
    • (2000) Mol Biol Evol , vol.17 , pp. 782-797
    • Sanderson, M.J.1    Wojciechowski, M.F.2    Hu, J.M.3    Khan, T.S.4    Brady, S.G.5
  • 81
    • 0029317470 scopus 로고
    • Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids
    • Delwiche CF, Kuhsel M, Palmer JD: Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids. Mol Phylogenet Evol 1995, 4:110-128.
    • (1995) Mol Phylogenet Evol , vol.4 , pp. 110-128
    • Delwiche, C.F.1    Kuhsel, M.2    Palmer, J.D.3
  • 82
    • 0036950836 scopus 로고    scopus 로고
    • Relationships among seed plants inferred from highly conserved genes: Sorting conflicting phylogenetic signals among ancient lineages
    • Magallón S, Sanderson MJ: Relationships among seed plants inferred from highly conserved genes: sorting conflicting phylogenetic signals among ancient lineages. Am J Bot 2002, 89:1991-2006.
    • (2002) Am J Bot , vol.89 , pp. 1991-2006
    • Magallón, S.1    Sanderson, M.J.2
  • 83
    • 3042550872 scopus 로고    scopus 로고
    • Genome-scale phylogeny and the detection of systematic biases
    • Phillips MJ, Delsuc F, Penny D: Genome-scale phylogeny and the detection of systematic biases. Mol Biol Evol 2004, 21:1455-1458.
    • (2004) Mol Biol Evol , vol.21 , pp. 1455-1458
    • Phillips, M.J.1    Delsuc, F.2    Penny, D.3
  • 84
    • 0026261665 scopus 로고
    • Universal primers for amplification of the non-coding regions of chloroplast DNA
    • Taberlet P, Gielly L, Pautou G, Bouvet J: Universal primers for amplification of the non-coding regions of chloroplast DNA. Pl Mol Biol 1991, 17:1105-1109.
    • (1991) Pl Mol Biol , vol.17 , pp. 1105-1109
    • Taberlet, P.1    Gielly, L.2    Pautou, G.3    Bouvet, J.4
  • 85
    • 0000878797 scopus 로고
    • Monophyly of the Asteridae and identification of their major lineages inferred from DNA sequences of rbcL
    • Olmstead RG, Michaels HJ, Scott KM, Palmer JD: Monophyly of the Asteridae and identification of their major lineages inferred from DNA sequences of rbcL. Ann Mo Bot Gard 1992, 79:249-265.
    • (1992) Ann Mo Bot Gard , vol.79 , pp. 249-265
    • Olmstead, R.G.1    Michaels, H.J.2    Scott, K.M.3    Palmer, J.D.4
  • 86
    • 0000259305 scopus 로고
    • The utility of atpB gene sequences in phylogenetic relationships: Comparison with rbcL and 18S ribosomal DNA sequences in Lardizabalaceae
    • Hoot SB, Culham A, Crane PR: The utility of atpB gene sequences in phylogenetic relationships: comparison with rbcL and 18S ribosomal DNA sequences in Lardizabalaceae. Ann Mo Bot Gard 1995, 82:194-207.
    • (1995) Ann Mo Bot Gard , vol.82 , pp. 194-207
    • Hoot, S.B.1    Culham, A.2    Crane, P.R.3
  • 88
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 89
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J: Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 91
    • 10644288251 scopus 로고    scopus 로고
    • The origin and diversification of angiosperms
    • Soltis PS, Soltis DE: The origin and diversification of angiosperms. Am J Bot 2004, 91:1614-1626.
    • (2004) Am J Bot , vol.91 , pp. 1614-1626
    • Soltis, P.S.1    Soltis, D.E.2


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