MEGA3: An integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
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Estimation of the number of nucleotide substitutions in the control region of mitochondrial-DNA in humans and chimpanzees
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Prospects for inferring very large phylogenies by using the Neighbor-Joining method
Tamura K, Nei M, Kumar S. 2004. Prospects for inferring very large phylogenies by using the Neighbor-Joining method. Proc Natl Acad Sci USA. 101:11030-11035.
ClustalW - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
Thompson JD, Higgins DG, Gibson TJ. 1994. ClustalW - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites
Yang Z, Kumar S. 1996. Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites. Mol Biol Evol. 13:650-659.