메뉴 건너뛰기




Volumn 5, Issue 1, 2010, Pages

Jane: A new tool for the cophylogeny reconstruction problem

Author keywords

[No Author keywords available]

Indexed keywords


EID: 77649177164     PISSN: None     EISSN: 17487188     Source Type: Journal    
DOI: 10.1186/1748-7188-5-16     Document Type: Article
Times cited : (334)

References (22)
  • 1
    • 58149216660 scopus 로고    scopus 로고
    • On the Computational Complexity of the Reticulate Cophylogeny Reconstruction Problem
    • 10.1089/cmb.2008.0084, 19119995
    • Libeskind-Hadas R, Charleston M. On the Computational Complexity of the Reticulate Cophylogeny Reconstruction Problem. Journal of Computational Biology 2009, 16:105-117. 10.1089/cmb.2008.0084, 19119995.
    • (2009) Journal of Computational Biology , vol.16 , pp. 105-117
    • Libeskind-Hadas, R.1    Charleston, M.2
  • 2
    • 77649126507 scopus 로고    scopus 로고
    • The Cophylogeny Reticulation Problem is NP-complete
    • Harvey Mudd College Technical Report 2009-01
    • Conow C, Fielder D, Ovadia Y, Libeskind-Hadas R. The Cophylogeny Reticulation Problem is NP-complete. Harvey Mudd College Technical Report 2009-01., http://www.cs.hmc.edu/~hadas/research/CophyNPC.pdf
    • Conow, C.1    Fielder, D.2    Ovadia, Y.3    Libeskind-Hadas, R.4
  • 3
    • 0141787526 scopus 로고    scopus 로고
    • TreeFitter
    • Ronquist F. TreeFitter. , http://www.ebc.uu.se/systzoo/research/treefitter/treefitter.html
    • Ronquist, F.1
  • 4
    • 0038877347 scopus 로고    scopus 로고
    • COMPONENT User's Manual
    • Page RDM. COMPONENT User's Manual. , http://taxonomy.zoology.gla.ac.uk/rod/cpw.html
    • Page, R.D.M.1
  • 5
    • 0031811061 scopus 로고    scopus 로고
    • Jungles: A new solution to the hostparasite phylogeny reconciliation problem
    • 10.1016/S0025-5564(97)10012-8, 9621683
    • Charleston M. Jungles: A new solution to the hostparasite phylogeny reconciliation problem. Mathematical Biosciences 1998, 149:191-223. 10.1016/S0025-5564(97)10012-8, 9621683.
    • (1998) Mathematical Biosciences , vol.149 , pp. 191-223
    • Charleston, M.1
  • 6
    • 77649107673 scopus 로고    scopus 로고
    • TreeMap
    • Charleston M, Page RDM. TreeMap. , http://www.it.usyd.edu.au/~mcharles/software/treemap/treemap.html
    • Charleston, M.1    Page, R.D.M.2
  • 7
    • 16244383582 scopus 로고    scopus 로고
    • Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information
    • Merkle D, Middendorf M. Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information. Theory of Biosciences 2005, 123(4):277-299.
    • (2005) Theory of Biosciences , vol.123 , Issue.4 , pp. 277-299
    • Merkle, D.1    Middendorf, M.2
  • 8
    • 77649136048 scopus 로고    scopus 로고
    • Tarzan
    • Merkle D, Middendorf M. Tarzan. , http://pacosy.informatik.uni-leipzig.de/pv/Software/Tarzan/PV-Tarzan.engl.html
    • Merkle, D.1    Middendorf, M.2
  • 9
    • 77649092838 scopus 로고    scopus 로고
    • Unreported Timing Incompatibilities in Tarzan
    • Conow C, Fielder D, Ovadia Y, Libeskind-Hadas R. Unreported Timing Incompatibilities in Tarzan. , http://www.cs.hmc.edu/~hadas/jane/TarzanErrors.html
    • Conow, C.1    Fielder, D.2    Ovadia, Y.3    Libeskind-Hadas, R.4
  • 10
    • 34250691462 scopus 로고    scopus 로고
    • When Can Host Shifts Produce Congruent Host and Parasite Phylogenies? A Simulation Approach
    • 10.1111/j.1420-9101.2007.01340.x, 17584237
    • De Vienne DM, Giraud T, Shykoff JA. When Can Host Shifts Produce Congruent Host and Parasite Phylogenies? A Simulation Approach. Journal of Evolutionary Biology 2007, 20(4):1428-1438. 10.1111/j.1420-9101.2007.01340.x, 17584237.
    • (2007) Journal of Evolutionary Biology , vol.20 , Issue.4 , pp. 1428-1438
    • De Vienne, D.M.1    Giraud, T.2    Shykoff, J.A.3
  • 11
    • 5344265163 scopus 로고    scopus 로고
    • A reconciliation analysis of host switching in plant-fungal symbioses
    • Jackson AP. A reconciliation analysis of host switching in plant-fungal symbioses. Evolution. 2004, 55(9):1909-1923.
    • (2004) Evolution. , vol.55 , Issue.9 , pp. 1909-1923
    • Jackson, A.P.1
  • 12
    • 0038693817 scopus 로고    scopus 로고
    • Parasite specialization from a phylogenetic perspective: a new index of host specificity
    • 10.1017/S0031182003002993, 12793652
    • Poulin R, Mouillot D. Parasite specialization from a phylogenetic perspective: a new index of host specificity. Parasitology 2003, 126:473-480. 10.1017/S0031182003002993, 12793652.
    • (2003) Parasitology , vol.126 , pp. 473-480
    • Poulin, R.1    Mouillot, D.2
  • 14
    • 0024164575 scopus 로고
    • Phylogenetic trees support the coevolution of parasites and their hosts
    • 10.1038/332258a0, 3347269
    • Hafner MS, Nadler SA. Phylogenetic trees support the coevolution of parasites and their hosts. Nature 1988, 332:258-259. 10.1038/332258a0, 3347269.
    • (1988) Nature , vol.332 , pp. 258-259
    • Hafner, M.S.1    Nadler, S.A.2
  • 15
    • 0034350319 scopus 로고    scopus 로고
    • Seabird louse coevolution: complex histories revealed by 12S rRNA sequences and reconciliation analyses
    • 10.1080/10635159950127303, 12116418
    • Paterson AM, Wallis GP, Wallis LJ, Gray RD. Seabird louse coevolution: complex histories revealed by 12S rRNA sequences and reconciliation analyses. Systematic Biology 2000, 49:383-399. 10.1080/10635159950127303, 12116418.
    • (2000) Systematic Biology , vol.49 , pp. 383-399
    • Paterson, A.M.1    Wallis, G.P.2    Wallis, L.J.3    Gray, R.D.4
  • 16
    • 9644304574 scopus 로고    scopus 로고
    • Cophylogeny of the Ficus Microcosm
    • 10.1017/S1464793104006463, 15682869
    • Jackson AP. Cophylogeny of the Ficus Microcosm. Biological Reviews 2004, 79(4):751-768. 10.1017/S1464793104006463, 15682869.
    • (2004) Biological Reviews , vol.79 , Issue.4 , pp. 751-768
    • Jackson, A.P.1
  • 17
    • 0035993788 scopus 로고    scopus 로고
    • Speciation in fig pollinators and parasite
    • 10.1046/j.1365-294X.2002.01529.x, 12144676
    • Weiblen GD, Bush GL. Speciation in fig pollinators and parasite. Molecular Ecology 2002, 11:1573-1578. 10.1046/j.1365-294X.2002.01529.x, 12144676.
    • (2002) Molecular Ecology , vol.11 , pp. 1573-1578
    • Weiblen, G.D.1    Bush, G.L.2
  • 18
    • 42449135641 scopus 로고    scopus 로고
    • Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciations
    • Refrégier G, Gac ML, Jabbour F, Widmen A, Shykoff JA, Yockteng R, Hood ME, Giraud T. Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciations. BMC Evolutionary Biology 2008, 8.
    • (2008) BMC Evolutionary Biology , vol.8
    • Refrégier, G.1    Gac, M.L.2    Jabbour, F.3    Widmen, A.4    Shykoff, J.A.5    Yockteng, R.6    Hood, M.E.7    Giraud, T.8
  • 19
    • 1642362564 scopus 로고    scopus 로고
    • Clade-limited colonization in brood parasitic finches (Vidua spp.)
    • 10.1080/10635150490265021, 14965909
    • Sorenson MD, Balakrishnan CN, Payne RB. Clade-limited colonization in brood parasitic finches (Vidua spp.). Systematic Biology 2004, 53:140-153. 10.1080/10635150490265021, 14965909.
    • (2004) Systematic Biology , vol.53 , pp. 140-153
    • Sorenson, M.D.1    Balakrishnan, C.N.2    Payne, R.B.3
  • 20
    • 0345074326 scopus 로고    scopus 로고
    • Plant-insect interactions: Double-dating associated insect and plant lineages reveals asynchronous radiations
    • 10.1080/10635150490264996, 14965907
    • Percy DM, Page RD, Cronk QC. Plant-insect interactions: Double-dating associated insect and plant lineages reveals asynchronous radiations. Systematic Biology 2004, 53:120-127. 10.1080/10635150490264996, 14965907.
    • (2004) Systematic Biology , vol.53 , pp. 120-127
    • Percy, D.M.1    Page, R.D.2    Cronk, Q.C.3
  • 21
    • 34447260049 scopus 로고    scopus 로고
    • Multiple Cophylogenetic Analyses Reveal Frequent Cospeciation between Pelicaniform Birds and Pectinopygus Lice
    • 10.1080/10635150701311370, 17464880
    • Hughes J, Kennedy M, Johnson K, Palma R, Page RD. Multiple Cophylogenetic Analyses Reveal Frequent Cospeciation between Pelicaniform Birds and Pectinopygus Lice. Systematic Biology 2007, 56(2):232-251. 10.1080/10635150701311370, 17464880.
    • (2007) Systematic Biology , vol.56 , Issue.2 , pp. 232-251
    • Hughes, J.1    Kennedy, M.2    Johnson, K.3    Palma, R.4    Page, R.D.5
  • 22
    • 1342290041 scopus 로고    scopus 로고
    • Phylogeny of "Philoceanus complex" seabird lice (Phtiraptera: Ischnocera) inferred from mitochondrial DNA sequences
    • 10.1016/S1055-7903(03)00227-6, 15012944
    • Page RD, Cruickshank R, Dickens M, Furness R, Kennedy M, Palma R, Smith V. Phylogeny of "Philoceanus complex" seabird lice (Phtiraptera: Ischnocera) inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 2004, 30(3):633-652. 10.1016/S1055-7903(03)00227-6, 15012944.
    • (2004) Molecular Phylogenetics and Evolution , vol.30 , Issue.3 , pp. 633-652
    • Page, R.D.1    Cruickshank, R.2    Dickens, M.3    Furness, R.4    Kennedy, M.5    Palma, R.6    Smith, V.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.