-
1
-
-
12344262805
-
A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome
-
ACCARDO, M.C., GIORDANO, E., RICCARDO, S., DIGILIO, F.A., IAZZETTI, G., CALOGERO, R.A., and FURIA, M., 2004. A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome. Bioinformatics 20: 3293-3301.
-
(2004)
Bioinformatics
, vol.20
, pp. 3293-3301
-
-
Accardo, M.C.1
Giordano, E.2
Riccardo, S.3
Digilio, F.A.4
Iazzetti, G.5
Calogero, R.A.6
Furia, M.7
-
2
-
-
59449084786
-
Non-coding RNAs revealed during identification of genes involved in chicken immune responses
-
AHANDA, M.L., RUBY, T., WITTZELL, H., BED'HOM, B., CHAUSSé, A.M., MORIN, V., OUDIN, A., CHEVALIER, C., YOUNG, J.R., and ZOOROB, R., 2008. Non-coding RNAs revealed during identification of genes involved in chicken immune responses. Immunogenetics, DOI: 10.1007/ s00251-008-0337-8.
-
(2008)
Immunogenetics
-
-
Ahanda, M.L.1
Ruby, T.2
Wittzell, H.3
Bed'Hom, B.4
Chaussé, A.M.5
Morin, V.6
Oudin, A.7
Chevalier, C.8
Young, J.R.9
Zoorob, R.10
-
3
-
-
41149177426
-
Trypanosoma brucei RNA editing: coupled cycles ofUdeletion reveal processive activity of the editing complex
-
ALATORTSEV, V.S., CRUZ-REYES, J., ZHELONKINA, A.G., and SOLLNER-WEBB, B., 2008. Trypanosoma brucei RNA editing: coupled cycles ofUdeletion reveal processive activity of the editing complex. Mol. Cell Biol. 28: 2437-2445.
-
(2008)
Mol. Cell Biol.
, vol.28
, pp. 2437-2445
-
-
Alatortsev, V.S.1
Cruz-Reyes, J.2
Zhelonkina, A.G.3
And Sollner-Webb, B.4
-
4
-
-
4344579113
-
The SINE-encoded mouse B2 RNA represses mRNAtranscription in response to heat shock
-
ALLEN, T.A., VON KAENEL, S., GOODRICH, J.A., and KUGEL, J., The SINE-encoded mouse B2 RNA represses mRNAtranscription in response to heat shock. Nat. Struct. Mol. Biol. 11: 816-821.
-
Nat. Struct. Mol. Biol.
, vol.11
, pp. 816-821
-
-
Allen, T.A.1
Von Kaenel, S.2
Goodrich, J.A.3
And Kugel, J.4
-
5
-
-
34250725542
-
Identification of bacterial small noncoding RNAs: experimental approaches
-
ALTUVIA, S., 2007. Identification of bacterial small noncoding RNAs: experimental approaches. Curr. Opin. Microbiol. 10: 257-261.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 257-261
-
-
Altuvia, S.1
-
6
-
-
33644876507
-
The tmRDB and SRPDB resources
-
ANDERSEN, E.S., ROSENBLAD, M.A., LARSEN, N., WESTERGAARD, J.C., BURS, J., WOWER, I.K., WOWER, J., GORODKIN, J., SAMUELSSON, T., and ZWIEB, C., 2006. The tmRDB and SRPDB resources. Nucleic Acids Res. 34: D163-D168.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Andersen, E.S.1
Rosenblad, M.A.2
Larsen, N.3
Westergaard, J.C.4
Burs, J.5
Wower, I.K.6
Wower, J.7
Gorodkin, J.8
Samuelsson, T.9
Zwieb, C.10
-
7
-
-
6044252163
-
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism
-
ARMBRUST, E.V., et al., 2004. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306: 79-86.
-
(2004)
Science
, vol.306
, pp. 79-86
-
-
Armbrust, E.V.1
-
8
-
-
34248176724
-
Heat shock genes: integrating cell survival and death
-
ARYA, R.,MALLIK, M., and LAKHOTIA, S.C., 2007. Heat shock genes: integrating cell survival and death. J. Biosci. 32: 595-610.
-
(2007)
J. Biosci.
, vol.32
, pp. 595-610
-
-
Arya, R.1
Mallik, M.2
And Lakhotia, S.C.3
-
9
-
-
4344560867
-
Novel non-coding RNAs in Dictyostelium discoideum and their expression during development
-
ASPEGREN, A., HINAS, A., LARSSON, P., LARSSON, A., and SöDERBOM, F., 2004. Novel non-coding RNAs in Dictyostelium discoideum and their expression during development. Nucleic Acids Res. 32: 4646-4656.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4646-4656
-
-
Aspegren, A.1
Hinas, A.2
Larsson, P.3
Larsson, A.4
And Söderbom, F.5
-
10
-
-
36148962401
-
Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture
-
ASPINALL, T.V., GORDON, J.M.B., BENNET, H.J., KARAHALIOS, P., BUKOWSKI, J.-P., WALKER, S.C., ENGELKE, D.R., and AVIS, J.M., 2007. Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture. Nucleic Acids Res. 35: 6439-6450.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6439-6450
-
-
Aspinall, T.V.1
Gordon, J.M.B.2
Bennet, H.J.3
Karahalios, P.4
Bukowski, J.-P.5
Walker, S.C.6
Engelke, D.R.7
Avis, J.M.8
-
11
-
-
84885534413
-
U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential ribosome assembly
-
ATZORN, V., FRAGAPANE, P., and KISS, T., 2004. U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential ribosome assembly. Cell 72: 443-457.
-
(2004)
Cell
, vol.72
, pp. 443-457
-
-
Atzorn, V.1
Fragapane, P.2
And Kiss, T.3
-
12
-
-
36849045243
-
Two distinct types of 6S RNA in Prochlorococcus
-
AXMANN, I.M., HOLTZENDORFF, J., VOSS, B., KENSCHE, P., and HESS, W.R., 2007. Two distinct types of 6S RNA in Prochlorococcus. Gene 406: 69-78.
-
(2007)
Gene
, vol.406
, pp. 69-78
-
-
Axmann, I.M.1
Holtzendorff, J.2
Voss, B.3
Kensche, P.4
And Hess, W.R.5
-
13
-
-
29044436786
-
Identification of cyanobacterial noncoding RNAs by comparative genome analysis
-
AXMANN, I.M., KENSCHE, P., VOGEL, J., KOHL, S., HERZEL, H., andHESS,W.R., 2005. Identification of cyanobacterial noncoding RNAs by comparative genome analysis. Genome Biol. 6: R73.
-
(2005)
Genome Biol.
, vol.6
-
-
Axmann, I.M.1
Kensche, P.2
Vogel, J.3
Kohl, S.4
Herzel, H.5
Hess, W.R.6
-
14
-
-
0344874259
-
Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster
-
AZZOUZ, T.N. and SCHüMPERLI, D., 2003. Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster. RNA 9: 1532-1541.
-
(2003)
RNA
, vol.9
, pp. 1532-1541
-
-
Azzouz, T.N.1
Schümperli, D.2
-
15
-
-
0036703184
-
The expanding snoRNA world
-
BACHELLERIE, J.-P., CAVAILLé, J., and HüTTENHOFER, A., 2002. The expanding snoRNA world. Biochimie 84: 775-790.
-
(2002)
Biochimie
, vol.84
, pp. 775-790
-
-
Bachellerie, J.-P.1
Cavaillé, J.2
Hüttenhofer, A.3
-
16
-
-
46349083026
-
The distributions, mechanisms, and structures of metabolite-binding riboswitches
-
BARRICK, J.E. and BREAKER, R.R., 2007. The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol. 8: R239.
-
(2007)
Genome Biol.
, vol.8
-
-
Barrick, J.E.1
Breaker, R.R.2
-
17
-
-
17844379221
-
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter
-
BARRICK, J.E., SUDARSAN, N.,WEINBERG, Z., RUZZO,W.L., and BREAKER, R.R., 2005. 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter. RNA 11: 774-784.
-
(2005)
RNA
, vol.11
, pp. 774-784
-
-
Barrick, J.E.1
Sudarsan, N.2
Weinberg, Z.3
Ruzzo, W.L.4
Breaker, R.R.5
-
18
-
-
37549056263
-
snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions
-
BAZELEY, P.S., SHEPELEV, V., TALEBIZADEH, Z., BUTLER, M.G., FEDOROVA, L., FILATOV, V., and FEDOROV, A., 2008. snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions. Gene 408: 172-179.
-
(2008)
Gene
, vol.408
, pp. 172-179
-
-
Bazeley, P.S.1
Shepelev, V.2
Talebizadeh, Z.3
Butler, M.G.4
Fedorova, L.5
Filatov, V.6
Fedorov, A.7
-
19
-
-
40449139336
-
Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health
-
BELANCIO, V.P., HEDGES, D.J., and DEININGER, P., 2008. Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. Genome Res. 18: 343-358.
-
(2008)
Genome Res.
, vol.18
, pp. 343-358
-
-
Belancio, V.P.1
Hedges, D.J.2
And Deininger, P.3
-
20
-
-
0028965514
-
Trans-splicing and polycistronic transcription in Caenorhabditis elegans
-
BLUMENTHAL, T., 1995. Trans-splicing and polycistronic transcription in Caenorhabditis elegans. Trends Genet. 11: 132-136.
-
(1995)
Trends Genet.
, vol.11
, pp. 132-136
-
-
Blumenthal, T.1
-
21
-
-
34249881878
-
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism
-
BOISSET, S., et al., 2007. Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. Genes Dev. 21: 1353-1366.
-
(2007)
Genes Dev.
, vol.21
, pp. 1353-1366
-
-
Boisset, S.1
-
22
-
-
20144387528
-
Evolutionary patterns of non-coding RNAs
-
BOMPFÜNEWERER, A.F., et al., 2005. Evolutionary patterns of non-coding RNAs. Theory Biosci. 123: 301-369.
-
(2005)
Theory Biosci.
, vol.123
, pp. 301-369
-
-
Bompfünewerer, A.F.1
-
23
-
-
57749186870
-
Spliceosomal cleavage generates the 30 end of telomerase RNA
-
BOX, J.A., BUNCH, J.T., TANG, W., and BAUMANN, P., 2008. Spliceosomal cleavage generates the 30 end of telomerase RNA. Nature 456: 910-914.
-
(2008)
Nature
, vol.456
, pp. 910-914
-
-
Box, J.A.1
Bunch, J.T.2
Tang, W.3
And Baumann, P.4
-
24
-
-
30844443491
-
Effect of SsrA (tmRNA) tagging system on translational regulation in Streptomyces
-
BRAUD, S., LAVIRE, C., BELLIER, A., and MAZODIER, P., 2006. Effect of SsrA (tmRNA) tagging system on translational regulation in Streptomyces. Arch. Microbiol. 184: 343-352.
-
(2006)
Arch. Microbiol.
, vol.184
, pp. 343-352
-
-
Braud, S.1
Lavire, C.2
Bellier, A.3
And Mazodier, P.4
-
25
-
-
41349118107
-
Complex riboswitches
-
BREAKER, R.R., 2008. Complex riboswitches. Science 319: 1795-1797.
-
(2008)
Science
, vol.319
, pp. 1795-1797
-
-
Breaker, R.R.1
-
26
-
-
34247109118
-
Hfq structure, function and ligand binding
-
BRENNAN, R.G. and LINK, T.M., 2007. Hfq structure, function and ligand binding. Curr. Opin. Microbiol. 10: 125-133.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 125-133
-
-
Brennan, R.G.1
Link, T.M.2
-
27
-
-
0032865868
-
RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements
-
BROSIUS, J., 1999. RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. Gene 238: 115-134.
-
(1999)
Gene
, vol.238
, pp. 115-134
-
-
Brosius, J.1
-
28
-
-
0037264089
-
Plant snoRNAs: functional evolution and new modes of gene expression
-
BROWN, J.W.S., ECHEVERRIA, M., and QU, L.-H., 2003. Plant snoRNAs: functional evolution and new modes of gene expression. Trends Plant Sci. 8: 42-49.
-
(2003)
Trends Plant Sci.
, vol.8
, pp. 42-49
-
-
Brown, J.W.S.1
Echeverria, M.2
Qu, L.-H.3
-
29
-
-
35548990581
-
A critical three-way junction is conserved in budding yeast and vertebrate telomerase RNAs
-
BROWN,Y.,ABRAHAM, M., PEARL, S.,KABAHA, M.M.,ELBOHER, E., and TZFATI, Y., 2007. A critical three-way junction is conserved in budding yeast and vertebrate telomerase RNAs. Nucleic Acids Res. 35: 6280-6289.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6280-6289
-
-
Brown, Y.1
Abraham, M.2
Pearl, S.3
Kabaha, M.M.4
Elboher, E.5
Tzfati, Y.6
-
30
-
-
62549133991
-
RNA turnover and chromatin-dependent gene silenc
-
BüHLER, M., 2008. RNA turnover and chromatin-dependent gene silencing. Chromosoma, DOI: 10.1007/s00412-008- 0195-z. BUSSEMAKERS, M.J., vAN BOKHOVEN, A., VERHAEGH, G.W., SMIT, F.P., KARTHAUS, H.F., SCHALKEN, J.A., DEBRUYNE, F. M., RU, N., and ISAACS, W.B., 1999. DD3: a new prostatespecific gene, highly overexpressed in prostate cancer. Cancer Res. 59: 5975-5979.
-
(2008)
Chromosoma, DOI: 10.1007/s00412-008- 0195-z. BUSSEMAKERS, M.J., vAN BOKHOVEN, A., VERHAEGH, G.W., SMIT, F.P., KARTHAUS, H.F., SCHALKEN, J.A., DEBRUYNE, F. M., RU, N., and ISAACS, W.B., 1999. DD3: a new prostatespecific gene, highly overexpressed in prostate cancer. Cancer Res.
, vol.59
, pp. 5975-5979
-
-
Bühler, M.1
-
31
-
-
33847271696
-
The imprinted H19 noncoding RNA is a primary microRNA precursor
-
CAI, X. and CULLEN, B.R., 2007. The imprinted H19 noncoding RNA is a primary microRNA precursor. RNA 13: 313-316.
-
(2007)
RNA
, vol.13
, pp. 313-316
-
-
Cai, X.1
Cullen, B.R.2
-
32
-
-
42449113800
-
RNA-splicing endonuclease structure and function
-
CALVIN, K. and LI, H., 2008. RNA-splicing endonuclease structure and function. Cell. Mol. Life Sci. 65: 1176-1185.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 1176-1185
-
-
Calvin, K.1
Li, H.2
-
33
-
-
47249107415
-
Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs
-
CARLILE, M., NALBANT, P., PRESTON-FAYERS, K., MCHAFFIE, G. S., and WERNER, A., 2008. Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs. Physiol. Genomics 34: 95-100.
-
(2008)
Physiol. Genomics
, vol.34
, pp. 95-100
-
-
Carlile, M.1
Nalbant, P.2
Preston-Fayers, K.3
Mchaffie, G.S.4
Werner, A.5
-
34
-
-
34249721400
-
Constructing the landscape of the mammalian transcriptome
-
CARNINCI, P., 2007. Constructing the landscape of the mammalian transcriptome. J. Exp. Biol. 210: 1497-1506.
-
(2007)
J. Exp. Biol.
, vol.210
, pp. 1497-1506
-
-
Carninci, P.1
-
35
-
-
39849104161
-
Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of sigma70
-
CAVANAGH, A.T., KLOCKO, A.D., LIU, X., and WASSARMAN, K. M., 2008. Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of sigma70. Mol. Microbiol. 67: 1242-1256.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 1242-1256
-
-
Cavanagh, A.T.1
Klocko, A.D.2
Liu, X.3
Wassarman, K.M.4
-
36
-
-
35548994539
-
Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis
-
CHAKRABARTI, K., PEARSON, M.,GRATE, L., STERNE-WEILER, T., DEANS, J., DONOHUE, M., and ARES, J.P., JR., (2007) Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis. RNA 13: 1923-1939.
-
(2007)
RNA
, vol.13
, pp. 1923-1939
-
-
Chakrabarti, K.1
Pearson, M.2
Grate, L.3
Sterne-Weiler, T.4
Deans, J.5
Donohue, M.6
Ares Jr., J.P.7
-
37
-
-
85047696885
-
Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes
-
CHAN, A.S., THORNER, P.S., SQUIRE, J.A., and ZIELENSKA, M., 2002. Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes. Oncogene 21: 3029-3037.
-
(2002)
Oncogene
, vol.21
, pp. 3029-3037
-
-
Chan, A.S.1
Thorner, P.S.2
Squire, J.A.3
And Zielenska, M.4
-
38
-
-
34249278470
-
Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
-
CHEAH, M.T., WACHTER, A., SUDARSAN, N., and BREAKER, R. R., 2007. Control of alternative RNA splicing and gene expression by eukaryotic riboswitches. Nature 447: 497-500.
-
(2007)
Nature
, vol.447
, pp. 497-500
-
-
Cheah, M.T.1
Wachter, A.2
Sudarsan, N.3
Breaker, R.R.4
-
39
-
-
6944256804
-
An emerging consensus for telomerase RNA structure
-
USA
-
CHEN, J.-L. andGREIDER, C.W., 2004. An emerging consensus for telomerase RNA structure. Proc. Natl. Acad. Sci. USA 101: 14683-14684.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 14683-14684
-
-
Chen, J.-L.1
Greider, C.W.2
-
40
-
-
25844433871
-
Identification and analysis of U5 snRNA variants in Drosophila
-
CHEN, L., LULLO, D.J.,MA, E., CELNIKER, S.E., RIO, D.C., and DOUDNA, J.A., 2005. Identification and analysis of U5 snRNA variants in Drosophila. RNA 11: 1473-1477.
-
(2005)
RNA
, vol.11
, pp. 1473-1477
-
-
Chen, L.1
Lullo, D.J.2
Ma, E.3
Celniker, S.E.4
Rio, D.C.5
Doudna, J.A.6
-
41
-
-
0034175553
-
Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet resistance
-
CHEN, X., QUINN, A.M., and WOLIN, S.L., 2000. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet resistance. Genes Dev. 14: 777-782.
-
(2000)
Genes Dev.
, vol.14
, pp. 777-782
-
-
Chen, X.1
Quinn, A.M.2
Wolin, S.L.3
-
42
-
-
34547893008
-
Combined experimental and computational approach to identify non-protein-coding RNAs in the deep-branching eukaryote Giardia intestinalis
-
CHEN, X., ROZHDESTVENSKY, T.S., COLLINS, L.J., SCHMITZ, J., and PENNY, D., 2007. Combined experimental and computational approach to identify non-protein-coding RNAs in the deep-branching eukaryote Giardia intestinalis. Nucleic Acids Res. 35: 4619-4628.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4619-4628
-
-
Chen, X.1
Rozhdestvensky, T.S.2
Collins, L.J.3
Schmitz, J.4
Penny, D.5
-
43
-
-
33748667563
-
Functional requirement of noncoding Y RNAs for human chromosomalDNAreplication
-
CHRISTOV, C.P., GARDINER, T.J., SZüTS, D., and KRUDE, T., Functional requirement of noncoding Y RNAs for human chromosomalDNAreplication. Mol. Cell. Biol. 26: 6993-7004.
-
Mol. Cell. Biol.
, vol.26
, pp. 6993-7004
-
-
Christov, C.P.1
Gardiner, T.J.2
Szüts, D.3
And Krude, T.4
-
44
-
-
37449007716
-
The DISC locus in psychiatric illness
-
CHUBB, J.E., BRADSHAW, N.J., SOARES, D.C., PORTEOUS, D.J., and MILLAR, J.K., 2008. The DISC locus in psychiatric illness. Mol. Psychiatry 13: 36-64.
-
(2008)
Mol. Psychiatry
, vol.13
, pp. 36-64
-
-
Chubb, J.E.1
Bradshaw, N.J.2
Soares, D.C.3
Porteous, D.J.4
Millar, J.K.5
-
45
-
-
16344385067
-
Complex spliceosomal organization ancestral to extant eukaryotes
-
COLLINS, L. and PENNY, D., 2005. Complex spliceosomal organization ancestral to extant eukaryotes. Mol. Biol. Evol. 22: 1053-1066.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1053-1066
-
-
Collins, L.1
Penny, D.2
-
46
-
-
0033814944
-
Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP
-
COLLINS, L.J.,MOULTON, V., and PENNY, D., 2000. Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP. J. Mol. Evol. 51: 194-204.
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 194-204
-
-
Collins, L.J.1
Moulton, V.2
Penny, D.3
-
47
-
-
34247111235
-
The intricate world of riboswitches
-
COPPINS, R.L., HALL, K.B., and GROISMAN, E.A., 2007. The intricate world of riboswitches. Curr. Opin. Microbiol. 10: 176-181.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 176-181
-
-
Coppins, R.L.1
Hall, K.B.2
Groisman, E.A.3
-
48
-
-
3142532677
-
A phylogenetically based secondary structure for the yeast telomerase RNA
-
DANDJINOU, A.T., LÉVESQUE, N., LAROSE, S., LUCIER, J.-F., ELELA, S.A., and WELLINGER, R.J., 2004. A phylogenetically based secondary structure for the yeast telomerase RNA. Curr. Biol. 14: 1148-1158.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1148-1158
-
-
Dandjinou, A.T.1
LéVesque, N.2
Larose, S.3
Lucier, J.-F.4
Elela, S.A.5
Wellinger, R.J.6
-
49
-
-
0037013831
-
Cajal body-specific small nuclear RNAs: a novel class of 20-o-methylation and pseudouridylation guide RNAs
-
DARZACQ, X., JáDY, B.E., VERHEGGEN, C., KISS, A.M., BERTRAND, E., and KISS, T., 2002. Cajal body-specific small nuclear RNAs: a novel class of 20-o-methylation and pseudouridylation guide RNAs. EMBO J. 21: 2746-2756.
-
(2002)
EMBO J.
, vol.21
, pp. 2746-2756
-
-
Darzacq, X.1
Jády, B.E.2
Verheggen, C.3
Kiss, A.M.4
Bertrand, E.5
Kiss, T.6
-
50
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
DAVID, L., HUBER, W., GRANOVSKAIA, M., TOEDLING, J., PALM, C.J., BOFKIN, L., JONES, T., DAVIS, R.W., and STEINMETZ, L.M., 2006. A high-resolution map of transcription in the yeast genome. Proc. Natl. Acad. Sci. USA 103: 5320-5325.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedling, J.4
Palm, C.J.5
Bofkin, L.6
Jones, T.7
Davis, R.W.8
Steinmetz, L.M.9
-
51
-
-
38049085313
-
Early evolution of histone mRNA 30 end processing
-
DáVILA LóPEZ,M. and SAMUELSSON, T., 2008. Early evolution of histone mRNA 30 end processing. RNA 14: 1-10.
-
(2008)
RNA
, vol.14
, pp. 1-10
-
-
Dávila López, M.1
Samuelsson, T.2
-
52
-
-
44349155377
-
Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components
-
DáVILA LóPEZ, M., ALM ROSENBLAD, M., and SAMUELSSON, T., Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components. Nucleic Acids Res. 36: 3001-3010.
-
Nucleic Acids Res.
, vol.36
, pp. 3001-3010
-
-
DáVila López, M.1
Alm Rosenblad, M.2
And Samuelsson, T.3
-
53
-
-
0242577547
-
A structural and functional study of plastid RNAs homologous to catalytic bacterial RNase P RNA
-
de la CRUZ, J. and VIOQUE, A., 2003. A structural and functional study of plastid RNAs homologous to catalytic bacterial RNase P RNA. Gene 321: 47-56.
-
(2003)
Gene
, vol.321
, pp. 47-56
-
-
De La Cruz, J.1
Vioque, A.2
-
54
-
-
0033754151
-
Small evolutionarily conserved RNA, resembling C/D box small nucleolar RNA, is transcribed from PWCR1, a novel imprinted gene in the Prader-Willi deletion region, which is highly expressed in brain
-
de LOS SANTOS, T., SCHWEIZER, J., REES, C.A., and FRANCKE, U., Small evolutionarily conserved RNA, resembling C/D box small nucleolar RNA, is transcribed from PWCR1, a novel imprinted gene in the Prader-Willi deletion region, which is highly expressed in brain. Am. J. Hum. Genet. 67: 1067-1082.
-
Am. J. Hum. Genet.
, vol.67
, pp. 1067-1082
-
-
De Los Santos, T.1
Schweizer, J.2
Rees, C.A.3
Francke, U.4
-
55
-
-
34548751838
-
Identifying effects of snoRNA- guided modifications on the synthesis and function of the yeast ribosome
-
DECATUR, W.A., LIANG, X.H., PIEKNA-PRZYBYLSKA, D., and FOURNIER, M.J., 2007. Identifying effects of snoRNA- guided modifications on the synthesis and function of the yeast ribosome. Methods Enzymol. 425: 283-316.
-
(2007)
Methods Enzymol.
, vol.425
, pp. 283-316
-
-
Decatur, W.A.1
Liang, X.H.2
Piekna-Przybylska, D.3
And Fournier, M.J.4
-
56
-
-
30044435097
-
Organisation of the Caenorhabditis elegans small noncoding transcriptome: genomic features, biogenesis and expression
-
DENG, W., et al., 2006. Organisation of the Caenorhabditis elegans small noncoding transcriptome: genomic features, biogenesis and expression. Genome Res. 16: 30-36.
-
(2006)
Genome Res.
, vol.16
, pp. 30-36
-
-
Deng, W.1
-
57
-
-
36549073601
-
The expanding RNA polymerase III transcriptome
-
DIECI, G., FIORINO, G., CASTELNUOVO, M., TEICHMANN, M., and PAGANO, A., 2007. The expanding RNA polymerase III transcriptome. Trends Genet. 23: 614-622.
-
(2007)
Trends Genet.
, vol.23
, pp. 614-622
-
-
Dieci, G.1
Fiorino, G.2
Castelnuovo, M.3
Teichmann, M.4
Pagano, A.5
-
58
-
-
58149177177
-
NRED: a database of long noncoding RNA expression
-
DINGER, M.E., PANG, K.C., MERCER, T.R., CROWE, M.L., GRIMMOND, S.M., and MATTICK, J.S., 2009. NRED: a database of long noncoding RNA expression. Nucleic Acids Res. 37: D122-D126.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Dinger, M.E.1
Pang, K.C.2
Mercer, T.R.3
Crowe, M.L.4
Grimmond, S.M.5
Mattick, J.S.6
-
59
-
-
50649118350
-
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
-
DINGER, M.E., et al., 2008. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res. 18: 1433-1445.
-
(2008)
Genome Res.
, vol.18
, pp. 1433-1445
-
-
Dinger, M.E.1
-
60
-
-
0038750923
-
Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies
-
DOMITROVICH, A.M. and KUNKEL, G.R., 2003. Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies. Nucleic Acids Res. 31: 2344-2352.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2344-2352
-
-
Domitrovich, A.M.1
Kunkel, G.R.2
-
61
-
-
34247519181
-
Trans-translation: the tmRNA-mediated surveillance mechanism for ribosome rescue, directed protein degradation, and nonstop mRNA decay
-
DULEBOHN, D., CHOY, J., SUNDERMEIER, T., OKAN, N., and KARZAI, A.W., 2007. Trans-translation: the tmRNA-mediated surveillance mechanism for ribosome rescue, directed protein degradation, and nonstop mRNA decay. Biochemistry 46: 4681-4693.
-
(2007)
Biochemistry
, vol.46
, pp. 4681-4693
-
-
Dulebohn, D.1
Choy, J.2
Sundermeier, T.3
Okan, N.4
And Karzai, A.W.5
-
62
-
-
33845645988
-
A novel class of developmentally regulated noncoding RNAs in Leishmania
-
DUMAS, C., CHOW, C., MüLLER, M., and PAPADOPOULOU, B., A novel class of developmentally regulated noncoding RNAs in Leishmania. Eukaryotic Cell 5: 2033-2046.
-
Eukaryotic Cell
, vol.5
, pp. 2033-2046
-
-
Dumas, C.1
Chow, C.2
Müller, M.3
And Papadopoulou, B.4
-
63
-
-
33745125901
-
The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene
-
DURET, L., CHUREAU, C., SAMAIN, S., WEISSENBACH, J., and AVNER, P., 2006. The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene. Science 312: 1653-1655.
-
(2006)
Science
, vol.312
, pp. 1653-1655
-
-
Duret, L.1
Chureau, C.2
Samain, S.3
Weissenbach, J.4
Avner, P.5
-
64
-
-
0035253857
-
A small nucleolar guide RNA functions in both 20-O-ribose methylation and pseudourydilation of the U5 spliceosomal RNA
-
JáDY B.E. and KISS, T., 2001. A small nucleolar guide RNA functions in both 20-O-ribose methylation and pseudourydilation of the U5 spliceosomal RNA. EMBO J. 20: 541-551.
-
(2001)
EMBO J.
, vol.20
, pp. 541-551
-
-
Jády, B.E.1
Kiss, T.2
-
65
-
-
30644478471
-
Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding
-
EGLOFF, S., Van HERREWEGHE, E., and KISS, T., 2006. Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding. Mol. Cell. Biol. 26: 630-642.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 630-642
-
-
Egloff, S.1
Van Herreweghe, E.2
Kiss, T.3
-
66
-
-
14844354250
-
Accumulation of miR- and BICRNAin humanBcell lymphomas
-
USA
-
EIS, P.S.,TAM,W., SUN, L.,CHADBURN, A., LI, Z.,GOMEZ, M.F., LUND, E., andDAHLBERG, J.E., 2005. Accumulation of miR- and BICRNAin humanBcell lymphomas. Proc. Natl. Acad. Sci. USA 102: 3627-3632.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 3627-3632
-
-
Eis, P.S.1
Tam, W.2
Sun, L.3
Chadburn, A.4
Li, Z.5
Gomez, M.F.6
Lund, e.7
Dahlberg, J.E.8
-
67
-
-
55949112523
-
Ahuman snoRNAwith microRNA-like functions
-
ENDER, C., KREK, A., FRIEDLäNDER, M.R., BEITZINGER, M., WEINMANN, L., CHEN, W., PFEFFER, S., RAJEWSKY, N., and MEISTER, G., 2008.Ahuman snoRNAwith microRNA-like functions. Mol Cell 32: 519-528.
-
(2008)
Mol Cell
, vol.32
, pp. 519-528
-
-
Ender, C.1
Krek, A.2
Friedländer, M.R.3
Beitzinger, M.4
Weinmann, L.5
Chen, W.6
Pfeffer, S.7
Rajewsky, N.8
Meister, G.9
-
68
-
-
4344583992
-
B2 RNA binds directly to RNA polymerase II to repress transcript synthesis
-
ESPINOZA, C.A., ALLEN, T.A., HIEB, A.R., KUGEL, J.F., and GOODRICH, J.A., 2004. B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nat. Struct. Mol. Biol. 11: 822-829.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 822-829
-
-
Espinoza, C.A.1
Allen, T.A.2
Hieb, A.R.3
Kugel, J.F.4
And Goodrich, J.A.5
-
69
-
-
33947721021
-
Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription
-
ESPINOZA, C.A., GOODRICH, J.A., and KUGEL, J.F., 2007. Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription. RNA 13: 583-596.
-
(2007)
RNA
, vol.13
, pp. 583-596
-
-
Espinoza, C.A.1
Goodrich, J.A.2
And Kugel, J.F.3
-
70
-
-
6944243994
-
Identification and characterization of a novel transcript down-regulated in Dlx1/Dlx2 and up-regulated in Pax6 mutant telencephalon
-
FAEDO, A.,QUINN, J.C., STONEY, P., LONG, J.E.,DYE, C., ZOLLO, M., RUBENSTEIN, J., PRICE, D., and BULFONE, A., (2004) Identification and characterization of a novel transcript down-regulated in Dlx1/Dlx2 and up-regulated in Pax6 mutant telencephalon. Dev Dyn. 231: 614-620.
-
(2004)
Dev Dyn
, vol.231
, pp. 614-620
-
-
Faedo, A.1
Quinn, J.C.2
Stoney, P.3
Long, J.E.4
Dye, C.5
Zollo, M.6
Rubenstein, J.7
Price, D.8
Bulfone, A.9
-
71
-
-
0033557343
-
Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis
-
FARRIS, A.D., KOELSCH, G., PRUIJN, G.J., van VENROOIJ, W.J., and HARLEY, J.B., 1999. Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis. Nucleic Acids Res. 27: 1070-1078.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1070-1078
-
-
Farris, A.D.1
Koelsch, G.2
Pruijn, G.J.3
Van Venrooij, W.J.4
And Harley, J.B.5
-
72
-
-
34250631912
-
Group II introns: structure, folding and splicing mechanism
-
FEDOROVA, O. and ZINGLER, N., 2007. Group II introns: structure, folding and splicing mechanism. Biol. Chem. 388: 665-678.
-
(2007)
Biol. Chem.
, vol.388
, pp. 665-678
-
-
Fedorova, O.1
Zingler, N.2
-
73
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
FENG, J., BI, C., CLARK, B.S., MADY, R., SHAH, P., and KOHTZ, J.D., 2006. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev. 20: 1470-1484.
-
(2006)
Genes Dev.
, vol.20
, pp. 1470-1484
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
And Kohtz, J.D.6
-
74
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
FORCE, A., LYNCH, M., PICKETT, F.B., AMORES, A., YAN, Y.-l., and POSTLETHWAIT, J., 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.-L.5
Postlethwait, J.6
-
75
-
-
59149091516
-
Hypermethylation of yeast telomerase RNAby the snRNA and snoRNA methyltransferase Tgs1
-
FRANKE, J., GEHLEN, J., and EHRENHOFER-MURRAY, A.E., 2008. Hypermethylation of yeast telomerase RNAby the snRNA and snoRNA methyltransferase Tgs1. J. Cell Sci. 121: 3553-3560.
-
(2008)
J. Cell Sci.
, vol.121
, pp. 3553-3560
-
-
Franke, J.1
Gehlen, J.2
And Ehrenhofer-Murray, A.E.3
-
76
-
-
0033595740
-
Do proteins predate DNA?
-
FREELAND, S.J.,KNIGHT, R.D., and LANDWEBER, L.F., 1999. Do proteins predate DNA? Science 286: 690-692.
-
(1999)
Science
, vol.286
, pp. 690-692
-
-
Freeland, S.J.1
Knight, R.D.2
Landweber, L.F.3
-
77
-
-
33645454706
-
The H19 gene: regulation and function of a noncoding RNA
-
GABORY, A., RIPOCHE, M.A., YOSHIMIZU, T., and DANDOLO, L., The H19 gene: regulation and function of a noncoding RNA. Cytogenet. Genome Res. 113: 188-193.
-
Cytogenet. Genome Res.
, vol.113
, pp. 188-193
-
-
Gabory, A.1
Ripoche, M.A.2
Yoshimizu, T.3
Dandolo, L.4
-
78
-
-
34249021370
-
Peptides encoded by short ORFs control development and define a new eukaryotic gene family
-
GALINDO, M.I., PUEYO, J.I., FOUIX, S.,BISHOP, S.A., andCOUSO, J.P., 2007. Peptides encoded by short ORFs control development and define a new eukaryotic gene family. PLoS Biol. 5: e106.
-
(2007)
PLoS Biol.
, vol.5
-
-
Galindo, M.I.1
Pueyo, J.I.2
Fouix, S.3
Bishop, S.A.4
Andcouso, J.P.5
-
79
-
-
0031003901
-
The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation
-
GANOT, P., CAIZERGUES-FERRER, M., and KISS, T., 1997. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. Genes Dev. 11: 941-956.
-
(1997)
Genes Dev.
, vol.11
, pp. 941-956
-
-
Ganot, P.1
Caizergues-Ferrer, M.2
Kiss, T.3
-
80
-
-
84885513434
-
TheRNA Worl
-
GESTELAND, R.F. and ATKINS, J.F., 1993. TheRNA World. Cold Spring Harbor Laboratory Press, Plainview, NY. GILBERT, W., 1986. The RNA world. Nature 319: 618.
-
(1993)
Cold Spring Harbor Laboratory Press, Plainview, NY. GILBERT, W., 1986. The RNA world. Nature
, vol.319
, pp. 618
-
-
Gesteland, R.F.1
Aatkins, J.F.2
-
81
-
-
0035172605
-
In vitro and in vivo processing of cyanelle tmRNA by RNase P
-
GIMPLE, O. and SCHön, A., 2001. In vitro and in vivo processing of cyanelle tmRNA by RNase P. Biol. Chem. 382: 1421-1429.
-
(2001)
Biol. Chem.
, vol.382
, pp. 1421-1429
-
-
Gimple, O.1
Schön, A.2
-
82
-
-
20444397322
-
Evolutionary history of 4.5SH RNA
-
GOGOLEVSKAYA, I.K.,KOVAL, A.P., and KRAMEROV, D.A., 2005. Evolutionary history of 4.5SH RNA. Mol. Biol. Evol. 22: 1546-1554.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1546-1554
-
-
Gogolevskaya, I.K.1
Koval, A.P.2
Kramerov, D.A.3
-
83
-
-
4344682527
-
The small RNA regulators of Escherichia coli: roles and mechanisms
-
GOTTESMAN, S., 2004. The small RNA regulators of Escherichia coli: roles and mechanisms. Annu. Rev. Microbiol. 58: 303-328.
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
84
-
-
49849086271
-
Arthropod 7SK RNA
-
GRUBER, A., KILGUS, C., MOSIG, A., HOFACKER, I.L., HENNIG, W., and STADLER, P.F., 2008a. Arthropod 7SK RNA. Mol. Biol. Evol. 25: 1923-1930.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1923-1930
-
-
Gruber, A.1
Kilgus, C.2
Mosig, A.3
Hofacker, I.L.4
Hennig, W.5
Stadler, P.F.6
-
85
-
-
40949135077
-
Invertebrate 7SK snRNAs
-
GRUBER, A.R., KOPER-EMDE, D., MARZ, M., TAFER, H., BERNHART, S., OBERNOSTERER, G., MOSIG, A., HOFACKER, I.L., STADLER, P.F., and BENECKE, B.-J., 2008b. Invertebrate 7SK snRNAs. J. Mol. Evol. 66: 107-115.
-
(2008)
J. Mol. Evol.
, vol.66
, pp. 107-115
-
-
Gruber, A.R.1
Koper-Emde, D.2
Marz, M.3
Tafer, H.4
Bernhart, S.5
Obernosterer, G.6
Mosig, A.7
Hofacker, I.L.8
Stadler, P.F.9
Benecke, B.-J.10
-
86
-
-
0346494971
-
The tmRNAwebsite: reductive evolution of tmRNA in plastids and other endosymbionts
-
GUENEAU DE NOVOA, P. and WILLIAMS, K.P., 2004. The tmRNAwebsite: reductive evolution of tmRNA in plastids and other endosymbionts. Nucleic Acids Res. 32: D104-D108.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Gueneau De Novoa, P.1
Williams, K.P.2
-
87
-
-
34250679403
-
Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants
-
GULTYAEV, A.P. and ROUSSIS, A., 2007. Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants. Nucleic Acids Res. 35: 3144-3152.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3144-3152
-
-
Gultyaev, A.P.1
Roussis, A.2
-
88
-
-
0033938015
-
The vertebrate 7SKRNAseparates hagfish (Myxine glutinosa) and lamprey (Lampetra fluviatilis)
-
GüRSOY, H.-C., KOPER, D., and BENECKE, B.-J., 2000. The vertebrate 7SKRNAseparates hagfish (Myxine glutinosa) and lamprey (Lampetra fluviatilis). J. Mol. Evol. 50: 456-464.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 456-464
-
-
Gürsoy, H.-C.1
Koper, D.2
Benecke, B.-J.3
-
89
-
-
55749104092
-
Noncoding RNA control of the making and breaking of sugars
-
GöRKE, B. and VOGEL, J., 2008. Noncoding RNA control of the making and breaking of sugars. Genes Dev. 22: 2914-2925.
-
(2008)
Genes Dev.
, vol.22
, pp. 2914-2925
-
-
Görke, B.1
Vogel, J.2
-
90
-
-
33646464226
-
Molecular characterization of a novel translocation t(5;14)(q21;q32) in a patient with congenital abnormalities
-
HAIDER, S., MATSUMOTO, R., KUROSAWA, N., WAKUI, K., FUKUSHIMA, Y., and ISOBE, M., 2006. Molecular characterization of a novel translocation t(5;14)(q21;q32) in a patient with congenital abnormalities. J. Hum. Genet. 51: 335-340.
-
(2006)
J. Hum. Genet.
, vol.51
, pp. 335-340
-
-
Haider, S.1
Matsumoto, R.2
Kurosawa, N.3
Wakui, K.4
Fukushima, Y.5
Isobe, M.6
-
91
-
-
34547626629
-
Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cell
-
USA
-
HAN, J., KIM, D., and MORRIS, K.V., 2007. Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cell. Proc. Natl. Acad. Sci. USA 104: 12422-12427.
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 12422-12427
-
-
Han, J.1
Kim, D.2
Morris, K.V.3
-
92
-
-
0141625270
-
Genome-wide location of yeast RNA polymerase III transcription machinery
-
HARISMENDY, O., GENDREL, C.G., SOULARUE, P., GIDROL, X., SENTENAC, A., WERNER, M., and LEFEBVRE, O., 2003. Genome-wide location of yeast RNA polymerase III transcription machinery. EMBO J. 22: 4738-4747.
-
(2003)
EMBO J.
, vol.22
, pp. 4738-4747
-
-
Harismendy, O.1
Gendrel, C.G.2
Soularue, P.3
Gidrol, X.4
Sentenac, A.5
Werner, M.6
Lefebvre, O.7
-
93
-
-
33751012428
-
Alu elements as regulators of gene expression
-
HäSLER, J. and STRUB, K., 2006. Alu elements as regulators of gene expression. Nucleic Acids Res. 34: 5491-5497.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5491-5497
-
-
Häsler, J.1
Strub, K.2
-
94
-
-
15244363004
-
SL trans-splicing: easy come or easy go?
-
HASTINGS, K.E., 2005. SL trans-splicing: easy come or easy go? Trends Genet. 21: 240-247.
-
(2005)
Trends Genet.
, vol.21
, pp. 240-247
-
-
Hastings, K.E.1
-
96
-
-
25444458283
-
Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome
-
HAVILIO, M., LEVANON, E.Y., LERMAN, G., KUPIEC, M., and EISENBERG, E., 2005. Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome. BMC Genomics 6: 93.
-
(2005)
BMC Genomics
, vol.6
, pp. 93
-
-
Havilio, M.1
Levanon, E.Y.2
Lerman, G.3
Kupiec, M.4
Eisenberg, E.5
-
98
-
-
44649141308
-
MicroRNAencoding long non-coding RNAs
-
HE, S., SU, H., LIU, C., SKOGERBø, G., HE, H., HE, D., ZHU, X., LIU, T., ZHAO, Y., and CHEN, R., 2008. MicroRNAencoding long non-coding RNAs. BMC Genomics 21: 236.
-
(2008)
BMC Genomics
, vol.21
, pp. 236
-
-
He, S.1
Su, H.2
Liu, C.3
Skogerbø, G.4
He, H.5
He, D.6
Zhu, X.7
Liu, T.8
Zhao, Y.9
Chen, R.10
-
99
-
-
38449092636
-
snoReport: computational identification of snoRNAs with unknown targets
-
HERTEL, J., HOFACKER, I.L., and STADLER, P.F., 2008. snoReport: computational identification of snoRNAs with unknown targets. Bioinformatics 24: 158-164.
-
(2008)
Bioinformatics
, vol.24
, pp. 158-164
-
-
Hertel, J.1
Hofacker, I.L.2
And Stadler, P.F.3
-
100
-
-
67650022866
-
Conserved introns reveal novel transcripts in Drosophila melanogaster
-
HILLER, M., FINDEISS, S., LEIN, S., MARZ, M., NICKEL, C., ROSE, D., SCHULZ, C., BACKOFEN, R., PROHASKA, S.J., REUTER, G., and STADLER, P.F., 2008. Conserved introns reveal novel transcripts in Drosophila melanogaster. Genome Res., 19: 1289-1300.
-
(2008)
Genome Res.
, vol.19
, pp. 1289-1300
-
-
Hiller, M.1
Findeiss, S.2
Lein, S.3
Marz, M.4
Nickel, C.5
Rose, D.6
Schulz, C.7
Backofen, R.8
Prohaska, S.J.9
Reuter, G.10
Stadler, P.F.11
-
101
-
-
33847197489
-
Treasure hunt in an amoeba: non-coding RNAs in Dictyostelium discoideum
-
HINAS, A. and SöDERBOM, F., 2007. Treasure hunt in an amoeba: non-coding RNAs in Dictyostelium discoideum. Curr. Genet. 51: 141-159.
-
(2007)
Curr. Genet.
, vol.51
, pp. 141-159
-
-
Hinas, A.1
Söderbom, F.2
-
102
-
-
0035818553
-
Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells
-
USA
-
HIROSE, T. and STEITZ, J.A., 2001. Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells. Proc. Natl. Acad. Sci. USA 98: 12914-12919.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 12914-12919
-
-
Hirose, T.1
Steitz, J.A.2
-
103
-
-
36049046650
-
Mouse nucleolin binds to 4.5S RNAh, a small noncoding RNA
-
HIROSE, Y. and HARADA, F., 2008. Mouse nucleolin binds to 4.5S RNAh, a small noncoding RNA. Biochem. Biophys. Res. Commun. 365: 62-68.
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.365
, pp. 62-68
-
-
Hirose, Y.1
Harada, F.2
-
104
-
-
36849084074
-
Human Y5 RNA specializes a Ro ribonucleoprotein for 5S ribosomalRNAquality control
-
HOGG, J.R. and COLLINS, K., 2007. Human Y5 RNA specializes a Ro ribonucleoprotein for 5S ribosomalRNAquality control. Genes Dev. 21: 3067-3072.
-
(2007)
Genes Dev.
, vol.21
, pp. 3067-3072
-
-
Hogg, J.R.1
Collins, K.2
-
105
-
-
0034284693
-
Targeted disruption of the human LIT1 locus defines a putative imprinting control element playing an essential role in Beckwith-Wiedemann syndrome
-
HORIKE, S., MITSUYA, K., MEGURO, M., KOTOBUKI, N., KASHIWAGI, A., NOTSU, T., SCHULZ, T.C., SHIRAYOSHI, Y., and OSHIMURA, M., 2000. Targeted disruption of the human LIT1 locus defines a putative imprinting control element playing an essential role in Beckwith-Wiedemann syndrome. Hum. Mol. Genet. 9: 2075-2083.
-
(2000)
Hum. Mol. Genet.
, vol.9
, pp. 2075-2083
-
-
Horike, S.1
Mitsuya, K.2
Meguro, M.3
Kotobuki, N.4
Kashiwagi, A.5
Notsu, T.6
Schulz, T.C.7
Shirayoshi, Y.8
Oshimura, M.9
-
106
-
-
33847185603
-
A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
-
HUTCHINSON, J.N., ENSMINGER, A.W., CLEMSON, C.M., LYNCH, C.R., LAWRENCE, J.B., and CHESS, A., 2007. A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains. BMC Genomics 8: 39.
-
(2007)
BMC Genomics
, vol.8
, pp. 39
-
-
Hutchinson, J.N.1
Ensminger, A.W.2
Clemson, C.M.3
Lynch, C.R.4
Lawrence, J.B.5
Chess, A.6
-
107
-
-
0035355205
-
RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
-
HüTTENHOFER, A., KIEFMANN, M., MEIER-EWERT, S., O'BRIEN, J., LEHRACH, H., BACHELLERIE, J.P., and BROSIUS, J., 2001. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 20: 2943-2953.
-
(2001)
EMBO J.
, vol.20
, pp. 2943-2953
-
-
Hüttenhofer, A.1
Kiefmann, M.2
Meier-Ewert, S.3
O'Brien, J.4
Lehrach, H.5
Bachellerie, J.P.6
Brosius, J.7
-
108
-
-
29244485152
-
Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila
-
INAGAKI, S., NUMATA, K., KONDO, T., TOMITA, M., YASUDA, K., KANAI, A., and KAGEYAMA, Y., 2005. Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila. Genes Cells 10: 1163-1173.
-
(2005)
Genes Cells
, vol.10
, pp. 1163-1173
-
-
Inagaki, S.1
Numata, K.2
Kondo, T.3
Tomita, M.4
Yasuda, K.5
Kanai, A.6
Kageyama, Y.7
-
109
-
-
33751277900
-
Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction
-
ISHII, N., et al., 2006. Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction. J. Hum. Genet. 51: 1087-1099.
-
(2006)
J. Hum. Genet.
, vol.51
, pp. 1087-1099
-
-
Ishii, N.1
-
110
-
-
33846195889
-
Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription
-
ISOGAI, Y., TAKADA, S., TJIAN, R., and KELES, S., 2007. Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription. EMBO J. 26: 79-89.
-
(2007)
EMBO J.
, vol.26
, pp. 79-89
-
-
Isogai, Y.1
Takada, S.2
Tjian, R.3
Keles, S.4
-
111
-
-
1642569682
-
Loss of the mRNA-like region in mitochondrial tmRNAs of jakobids
-
JACOB, Y., SEIF, E., PAQUET, P.-O., and LANG, B.F., 2004. Loss of the mRNA-like region in mitochondrial tmRNAs of jakobids. RNA 10: 605-614.
-
(2004)
RNA
, vol.10
, pp. 605-614
-
-
Jacob, Y.1
Seif, E.2
Paquet, P.-O.3
Lang, B.F.4
-
112
-
-
14044265657
-
Function of the SmpB tail in transfer-messenger RNA translation revealed by a nucleusencoded form
-
JACOB, Y., SHARKADY, S.M., BHARDWAJ, K., SANDA, A., and WILLIAMS, K.P., 2005. Function of the SmpB tail in transfer- messenger RNA translation revealed by a nucleusencoded form. J. Biol. Chem. 280: 5503-5509.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 5503-5509
-
-
Jacob, Y.1
Sharkady, S.M.2
Bhardwaj, K.3
Sanda, A.4
Williams, K.P.5
-
113
-
-
17944388104
-
Human telomeraseRNAand box H/ACAscaRNAs share a common Cajal body specific localization signal
-
JáDY, B.E., BERTRAND, E., and KISS, T., 2004. Human telomeraseRNAand box H/ACAscaRNAs share a common Cajal body specific localization signal. J. Cell Biol. 164: 647-652.
-
(2004)
J. Cell Biol.
, vol.164
, pp. 647-652
-
-
Jády, B.E.1
Bertrand, E.2
Kiss, T.3
-
114
-
-
38149069007
-
Systematic identification of non-coding RNA 2,2,7-trimethylguanosine cap structures in Caenorhabditis elegans
-
JIA, D., CAI, L.,HE, H., SKOGERBØ, G., LI, T.,AFTAB, M.N., and CHEN, R., 2007. Systematic identification of non-coding RNA 2,2,7-trimethylguanosine cap structures in Caenorhabditis elegans. BMC Mol Biol. 8: 86.
-
(2007)
BMC Mol Biol.
, vol.8
, pp. 86
-
-
Jia, D.1
Cai, L.2
He, H.3
Skogerbø, G.4
Li, T.5
Aftab, M.N.6
Chen, R.7
-
115
-
-
43349083066
-
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein-synthesis
-
JöCHL, C., REDERSTORFF, M., HERTEL, J., STADLER, P.F., HOFACKER, I.L., SCHRETTL, M., HAAS, H., and HüTTENHOFER, A., 2008. Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein-synthesis. Nucleic Acids Res. 36: 2677-2689.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2677-2689
-
-
Jöchl, C.1
Rederstorff, M.2
Hertel, J.3
Stadler, P.F.4
Hofacker, I.L.5
Schrettl, M.6
Haas, H.7
Hüttenhofer, A.8
-
116
-
-
58149103424
-
Regulation of neural macroRNAs by the transcriptional repressor REST
-
JOHNSON, R., TEH, C.H., JIA, H., VANISRI, R.R., PANDEY, T., LU, Z.H., BUCKLEY, N.J., STANTON, L.W., and LIPOVICH, L. 2008 Regulation of neural macroRNAs by the transcriptional repressor REST. RNA, 1127009, DOI: 10. 1261/rna.
-
(2008)
RNA
-
-
Johnson, R.1
Teh, C.H.2
Jia, H.3
Vanisri, R.R.4
Pandey, T.5
Lu, Z.H.6
Buckley, N.J.7
Stanton, L.W.8
Lipovich, L.9
-
117
-
-
33751018566
-
Human sat III and Drosophila hsrx transcripts: a common paradigm for regulation of nuclear RNA processing in stressed cells
-
JOLLY, C. and LAKHOTIA, S.C., 2006. Human sat III and Drosophila hsrx transcripts: a common paradigm for regulation of nuclear RNA processing in stressed cells. Nucleic Acids Res. 34: 5508-5514.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5508-5514
-
-
Jolly, C.1
Lakhotia, S.C.2
-
118
-
-
62549141048
-
A survey of nematode SmY RNAs
-
JONES, T., OTTO, W., MARZ, M., EDDY, S., and STADLER, P., A survey of nematode SmY RNAs. RNA Biol. 6: (1), 5-8.
-
RNA Biol.
, vol.6
, Issue.1
, pp. 5-8
-
-
Jones, T.1
Otto, W.2
Marz, M.3
Eddy, S.4
And Stadler, P.5
-
119
-
-
22244468727
-
A surprisingly large RNase P RNA in Candida glabrata
-
KACHOURI, R., STRIBINSKIS,V., ZHU,Y., RAMOS, K.S.,WESTHOF, E., and LI, Y., 2005. A surprisingly large RNase P RNA in Candida glabrata. RNA 11: 1064-1072.
-
(2005)
RNA
, vol.11
, pp. 1064-1072
-
-
Kachouri, R.1
Stribinskis, V.2
Zhu, Y.3
Ramos, K.S.4
Westhof, E.5
Li, Y.6
-
120
-
-
34250160256
-
RNAmaps reveal newRNAclasses and a possible function for pervasive transcription
-
KAPRANOV, P., et al., 2007.RNAmaps reveal newRNAclasses and a possible function for pervasive transcription. Science 316: 1484-1488.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
-
121
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
KATAYAMA, S., et al., 2005. Antisense transcription in the mammalian transcriptome. Science 309: 1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
-
122
-
-
42949132235
-
Hidden layers of human small RNAs
-
KAWAJI, H., et al., 2008. Hidden layers of human small RNAs. BMC Genomics 9: 157.
-
(2008)
BMC Genomics
, vol.9
, pp. 157
-
-
Kawaji, H.1
-
123
-
-
38549119502
-
Abundance and functional diversity of riboswitches in microbial communities
-
KAZANOV, M.D.,VITRESCHAK, A.G., and GELFAND, M.S., 2007. Abundance and functional diversity of riboswitches in microbial communities. BMC Genomics 8: 347.
-
(2007)
BMC Genomics
, vol.8
, pp. 347
-
-
Kazanov, M.D.1
Vitreschak, A.G.2
Gelfand, M.S.3
-
124
-
-
33846914865
-
Two primate-specific small nonprotein- coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partners
-
KHANAM, T., ROZHDESTVENSKY, T.S., BUNDMAN, M., GALIVETI, C.R.,HANDEL, S., SUKONINA,V., JORDAN, U.,BROSIUS, J., and SKRYABIN, B.V., 2007. Two primate-specific small nonprotein- coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partners. Nucleic Acids Res 35: 529-539.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 529-539
-
-
Khanam, T.1
Rozhdestvensky, T.S.2
Bundman, M.3
Galiveti, C.R.4
Handel, S.5
Sukonina, V.6
Jordan, U.7
Brosius, J.8
Skryabin, B.V.9
-
125
-
-
11344264898
-
Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases
-
KIM, K.-s. and LEE, Y., 2004. Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases. Nucleic Acids Res. 32: 6057-6068.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 6057-6068
-
-
Kim, K.-S.1
Lee, Y.2
-
127
-
-
2942617210
-
Developmental regulation of EVF-1, a novel non-coding RNA transcribed upstream of the mouse Dlx6 gene
-
KOHTZ, J. and FISHELL, G., 2004. Developmental regulation of EVF-1, a novel non-coding RNA transcribed upstream of the mouse Dlx6 gene. Gene Expr. Patterns 4: 407-412.
-
(2004)
Gene Expr. Patterns
, vol.4
, pp. 407-412
-
-
Kohtz, J.1
Fishell, G.2
-
128
-
-
0028124122
-
AtRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
-
USA
-
KOMINE, Y., KITABATAKE, M., YOKOGAWA, T., NISHIKAWA, K., and INOKUCHI, H., 1994.AtRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc. Natl. Acad. Sci. USA 91: 9223-9227.
-
(1994)
Proc. Natl. Acad. Sci.
, vol.91
, pp. 9223-9227
-
-
Komine, Y.1
Kitabatake, M.2
Yokogawa, T.3
Nishikawa, K.4
Inokuchi, H.5
-
129
-
-
36049047997
-
Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation
-
KöNIG, H.,MATTER, N.,BADER, R.,THIELE,W., and MüLLER, F., Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation. Cell 131: 718-729.
-
Cell
, vol.131
, pp. 718-729
-
-
König, H.1
Matter, N.2
Bader, R.3
Thiele, W.4
Müller, F.5
-
130
-
-
23644459685
-
Transcription of mammalian mRNAs by a novel nuclear RNA polymerase of mitochondrial origin
-
KRAVCHENKO, J., ROGOZIN, I.B., KOONIN, E.V., and CHUMAKOV, P.M., 2005. Transcription of mammalian mRNAs by a novel nuclear RNA polymerase of mitochondrial origin. Nature 436: 735-739.
-
(2005)
Nature
, vol.436
, pp. 735-739
-
-
Kravchenko, J.1
Rogozin, I.B.2
Koonin, E.V.3
And Chumakov, P.M.4
-
131
-
-
42449086866
-
LARP7 is a stable component of the 7SK snRNP while P-TEFb, HEXIM1 and hnRNP A1 are reversibly associated
-
KRUEGER, B.J., et al., 2008. LARP7 is a stable component of the 7SK snRNP while P-TEFb, HEXIM1 and hnRNP A1 are reversibly associated. Nucleic Acids Res. 36: 2218-2229.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2218-2229
-
-
Krueger, B.J.1
-
132
-
-
0035933310
-
Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage
-
KURYSHEV,V.Y., SKRYABIN, B.V.,KREMERSKOTHEN, J., JURKA, J., and BROSIUS, J., 2001. Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage. J. Mol. Biol. 309: 1049-1066.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 1049-1066
-
-
Kuryshev, V.Y.1
Skryabin, B.V.2
Kremerskothen, J.3
Jurka, J.4
Brosius, J.5
-
133
-
-
0036829065
-
U1 snRNA associates with TFIIH and regulates transcriptional initiation
-
KWEK, K.Y.,MURPHY, S., FURGER, A., THOMAS, B., O'GORMAN, W., KIMURA, H., PROUDFOOT, N.J., and AKOULITCHEV, A., U1 snRNA associates with TFIIH and regulates transcriptional initiation. Nat. Struct. Biol. 9: 800-805.
-
Nat. Struct. Biol.
, vol.9
, pp. 800-805
-
-
Kwek, K.Y.1
Murphy, S.2
Furger, A.3
Thomas, B.4
O'Gorman, W.5
Kimura, H.6
Proudfoot, N.J.7
Akoulitchev, A.8
-
135
-
-
41749103319
-
Small non-coding RNAs in Caulobacter crescentus
-
LANDT, S.G., ABELIUK, E., MCGRATH, P.T., LESLEY, J.A., MCADAMS, H.H., and SHAPIRO, L., 2008. Small non-coding RNAs in Caulobacter crescentus. Mol. Microbiol. 68: 600-614.
-
(2008)
Mol. Microbiol
, vol.68
, pp. 600-614
-
-
Landt, S.G.1
Abeliuk, E.2
Mcgrath, P.T.3
Lesley, J.A.4
Mcadams, H.H.5
Shapiro, L.6
-
136
-
-
41749103319
-
Small non-coding RNAs in Caulobacter crescentus
-
LANDT, S.G., ABELIUK, E., MCGRATH, P.T., LESLEY, J.A., MCADAMS, H.H., and SHAPIRO, L., 2008. Small non-coding RNAs in Caulobacter crescentus. Mol. Microbiol.
-
(2008)
Mol. Microbiol.
-
-
Landt, S.G.1
Abeliuk, E.2
Mcgrath, P.T.3
Lesley, J.A.4
Mcadams, H.H.5
Shapiro, L.6
-
137
-
-
0033515637
-
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
-
LANZ, R.B., MCKENNA, N.J., ONATE, S.A., ALBRECHT, U., WONG, J., TSAI, S.Y., TSAI, M.J., and O'MALLEY, B.W., A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. Cell 97: 17-27.
-
Cell
, vol.97
, pp. 17-27
-
-
Lanz, R.B.1
Mckenna, N.J.2
Onate, S.A.3
Albrecht, U.4
Wong, J.5
Tsai, S.Y.6
Tsai, M.J.7
O'Malley, B.W.8
-
138
-
-
44849101703
-
De novo search for noncodingRNAgenes in theAT-rich genome of Dictyostelium dicoideum: performance of Markov-dependent genome feature scoring
-
LARSSON, P., HINAS, A., ARDELL, D.H., KIRSEBOM, L., VIRTANEN, A., and SQöDERBOM, F., 2008. De novo search for noncodingRNAgenes in theAT-rich genome of Dictyostelium dicoideum: performance of Markov-dependent genome feature scoring. Genome Res. 18: 888-899.
-
(2008)
Genome Res.
, vol.18
, pp. 888-899
-
-
Larsson, P.1
Hinas, A.2
Ardell, D.H.3
Kirsebom, L.4
Virtanen, A.5
Sqöderbom, F.6
-
139
-
-
37849037420
-
TER1, the RNA subunit of fission yeast telomerase
-
LEONARDI, J., BOX, J.A., BUNCH, J.T., and BAUMANN, P., 2008. TER1, the RNA subunit of fission yeast telomerase. Nat. Struct. Mol. Biol. 15: 26-33.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 26-33
-
-
Leonardi, J.1
Box, J.A.2
Bunch, J.T.3
Baumann, P.4
-
140
-
-
33644875300
-
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
-
LESTRADE, L. and WEBER, M.J., 2008. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res. 34: D158-D162.
-
(2008)
Nucleic Acids Res.
, vol.34
-
-
Lestrade, L.1
Weber, M.J.2
-
141
-
-
34548605504
-
Steroid receptor RNA activator (SRA1): unusual bifaceted gene products with suspected relevance to breast cancer
-
LEYGUE, E., 2007. Steroid receptor RNA activator (SRA1): unusual bifaceted gene products with suspected relevance to breast cancer. Nucl. Recept. Signal. 5: e006.
-
(2007)
Nucl. Recept. Signal.
, vol.5
-
-
Leygue, E.1
-
142
-
-
36249029193
-
Rnase P of the Cyanophora paradoxa cyanelle: a plastid ribozyme
-
LI, D., WILLKOMM, D.K., SCHön, A., and HARTMANN, R.K., 2007a. Rnase P of the Cyanophora paradoxa cyanelle: a plastid ribozyme. Biochimie 89: 1528-1538.
-
(2007)
Biochimie
, vol.89
, pp. 1528-1538
-
-
Li, D.1
Willkomm, D.K.2
Schön, A.3
Hartmann, R.K.4
-
143
-
-
41949113248
-
Nuclear non-coding RNAs are transcribed from the centromeres of Plasmodium falciparum and are associated with centromeric chromatin
-
LI, F., SONBUCHNER, L., KYES, S.A., EPP, C., and DEITSCH, K. W., 2008. Nuclear non-coding RNAs are transcribed from the centromeres of Plasmodium falciparum and are associated with centromeric chromatin. J. Biol. Chem. 283: 5692-5698.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 5692-5698
-
-
Li, F.1
Sonbuchner, L.2
Kyes, S.A.3
Epp, C.4
Deitsch, K.W.5
-
144
-
-
0030999967
-
Expression of the putative proto-oncogene His-1 in normal and neoplastic tissues
-
LI, J., WITTE, D.P., DYKE, T.V., and ASKEW, D.S., 1997. Expression of the putative proto-oncogene His-1 in normal and neoplastic tissues. Am. J. Pathol. 150: 1297-1305.
-
(1997)
Am. J. Pathol.
, vol.150
, pp. 1297-1305
-
-
Li, J.1
Witte, D.P.2
Dyke, T.V.3
Askew, D.S.4
-
145
-
-
34447107819
-
Global identification and characterization of transcriptionally active regions in the rice genome
-
LI, L., et al., 2007b. Global identification and characterization of transcriptionally active regions in the rice genome. PLoS ONE 2: e294.
-
(2007)
PLoS ONE
, vol.2
-
-
Li, L.1
-
146
-
-
33947630136
-
Genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Leishmania major indicates conservation among trypanosomatids in the repertoire and in their rRNA targets
-
LIANG, X.,HURY, A.,HOZE, E.,ULIEL, S.,MYSLYUK, I.,APATOFF, A., UNGER, R., and MICHAELI, S., 2006. Genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Leishmania major indicates conservation among trypanosomatids in the repertoire and in their rRNA targets. Eukaryotic Cell 6: 361-377.
-
(2006)
Eukaryotic Cell
, vol.6
, pp. 361-377
-
-
Liang, X.1
Hury, A.2
Hoze, E.3
Uliel, S.4
Myslyuk, I.5
Apatoff, A.6
Unger, R.7
Michaeli, S.8
-
147
-
-
33947630136
-
Genomewide analysis of C/D and H/ACA-like small nucleolar RNAs inLeishmania major indicates conservation among Trypanosomatids in the repertoire and in their rRNA targets
-
LIANG, X.-h., HURY, A., HOZE, E., ULIEL, S., MYSLYUK, I., APATOFF, A., UNGER, R., and MICHAELI, S., 2007. Genomewide analysis of C/D and H/ACA-like small nucleolar RNAs inLeishmania major indicates conservation among Trypanosomatids in the repertoire and in their rRNA targets. Eukaryotic Cell 6: 361-377.
-
(2007)
Eukaryotic Cell
, vol.6
, pp. 361-377
-
-
Liang, X.-H.1
Hury, A.2
Hoze, E.3
Uliel, S.4
Myslyuk, I.5
Apatoff, A.6
Unger, R.7
Michaeli, S.8
-
148
-
-
34848921882
-
Spliced leader RNAmediated trans-splicing in a dinoflagellate, Karenia brevis
-
LIDIE, K.B. and van DOLAH, F.M., 2007. Spliced leader RNAmediated trans-splicing in a dinoflagellate, Karenia brevis. J. Eukaryot. Microbiol. 54: 427-435.
-
(2007)
J. Eukaryot. Microbiol.
, vol.54
, pp. 427-435
-
-
Lidie, K.B.1
Van Dolah, F.M.2
-
149
-
-
33846950027
-
A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas
-
LIN, R., MAEDA, S., LIU, C., KARIN, M., and EDGINGTON, T.S., A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas. Oncogene 26: 851-858.
-
Oncogene
, vol.26
, pp. 851-858
-
-
Lin, R.1
Maeda, S.2
Liu, C.3
Karin, M.4
Edgington, T.S.5
-
150
-
-
0038381510
-
The trypanosomatid signal recognition particle consists of twoRNAmolecules, a 7SL RNA homolog and a novel tRNA-like molecule
-
LIU, L., BEN-SHLOMO, H., HU, Y.X., STERN, M.Z., GONCHAROV, I., ZHANG, Y. and MICHAELI, S., 2003. The trypanosomatid signal recognition particle consists of twoRNAmolecules, a 7SL RNA homolog and a novel tRNA-like molecule. J. Biol. Chem. 278: 18271-18280.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 18271-18280
-
-
Liu, L.1
Ben-Shlomo, H.2
Hu, Y.X.3
Stern, M.Z.4
Goncharov, I.5
Zhang, Y.6
Michaeli, S.7
-
151
-
-
22244432192
-
Evolutionary conservation of minor U12-type spliceosome between plants and humans
-
LORKOVIC, Z.J., LEHNER, R., FORSTNER, C., and BARTA, A., Evolutionary conservation of minor U12-type spliceosome between plants and humans. RNA 11: 1095-1107.
-
RNA
, vol.11
, pp. 1095-1107
-
-
Lorkovic, Z.J.1
Lehner, R.2
Forstner, C.3
Barta, A.4
-
152
-
-
45449108588
-
Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci
-
LOURO, R., EL-JUNDI, T., NAKAYA, H.I., REIS, E.M., and VERJOVSKI-ALMEIDA, S., 2008. Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci. Genomics 92: 18-25.
-
(2008)
Genomics
, vol.92
, pp. 18-25
-
-
Louro, R.1
El-Jundi, T.2
Nakaya, H.I.3
Reis, E.M.4
And Verjovski-Almeida, S.5
-
153
-
-
33846932045
-
Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs
-
LUO,Y. andLI, S., 2007. Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs. Nucleic Acids Res. 35: 559-571.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 559-571
-
-
Luo, Y.1
Li, S.2
-
154
-
-
0030930073
-
Archaeal introns: splicing, intercellular mobility and evolution
-
LYKKE-ANDERSEN, J., AAGAARD, C., SEMIONENKOV, M., and GARRETT, R.A., 1997. Archaeal introns: splicing, intercellular mobility and evolution. Trends Biochem. Sci. 22: 326-331.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 326-331
-
-
Lykke-Andersen, J.1
Aagaard, C.2
Semionenkov, M.3
And Garrett, R.A.4
-
155
-
-
33947732940
-
A novel family of C
-
MACMORRIS, M., KUMAR, M., LASDA, E., LARSEN, A., KRAEMER, B., and BLUMENTHAL, T., 2007. A novel family of C. elegans snRNPs contains proteins associated with transsplicing. RNA 13: 511-520.
-
(2007)
elegans snRNPs contains proteins associated with transsplicing. RNA
, vol.13
, pp. 511-520
-
-
Macmorris, M.1
Kumar, M.2
Lasda, E.3
Larsen, A.4
Kraemer, B.5
Blumenthal, T.6
-
156
-
-
34247125527
-
Small ncRNA transcriptome analysis from kinetoplast mitochondria of Leishmania tarentolae
-
MADEJ, M.J., ALFONZO, J.D., and HüTTENHOFER, A., 2007. Small ncRNA transcriptome analysis from kinetoplast mitochondria of Leishmania tarentolae. Nucleic Acids Res. 35: 1544-1554.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1544-1554
-
-
Madej, M.J.1
Alfonzo, J.D.2
And Hüttenhofer, A.3
-
157
-
-
45849141219
-
Identification of novel guide RNAs from the mitochondria of Trypanosoma brucei
-
MADEJ, M.J., NIEMANN, M., HüTTENHOFER, A., and GäRINGER, H.U., 2008. Identification of novel guide RNAs from the mitochondria of Trypanosoma brucei. RNA Biol. 5: 84-91.
-
(2008)
RNA Biol.
, vol.5
, pp. 84-91
-
-
Madej, M.J.1
Niemann, M.2
Hüttenhofer, A.3
And Gäringer, H.U.4
-
158
-
-
0034666279
-
Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase
-
MAEDA, H., FUJITA, N., and ISHIHAMA, A., 2000. Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase. Nucleic Acids Res. 28: 3497-3503.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3497-3503
-
-
Maeda, H.1
Fujita, N.2
And Ishihama, A.3
-
159
-
-
33646490270
-
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs
-
MAEDA, N., et al., 2006. Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. PLoS Genetics 2: e62.
-
(2006)
PLoS Genetics
, vol.2
-
-
Maeda, N.1
-
160
-
-
33749153857
-
Biol1ogical function of unannotated transcription during the early development of Drosophila melanogaster
-
MANAK, J.R., et al., 2006. Biol1ogical function of unannotated transcription during the early development of Drosophila melanogaster. Nat Genet 38: 1151-1158.
-
(2006)
Nat Genet
, vol.38
, pp. 1151-1158
-
-
Manak, J.R.1
-
161
-
-
39549103642
-
Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
-
MARINER, P.D., WALTERS, R.D., ESPINOZA, C.A., DRULLINGER, L.F.,WAGNER, S.D., KUGEL, J.F., and GOODRICH, J.A., 2008. Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol. Cell 29: 499-509.
-
(2008)
Mol. Cell
, vol.29
, pp. 499-509
-
-
Mariner, P.D.1
Walters, R.D.2
Espinoza, C.A.3
Drullinger, L.F.4
Wagner, S.D.5
Kugel, J.F.6
Goodrich, J.A.7
-
162
-
-
0029853505
-
Direct analysis of nematode cis- and trans-spliceosomes: a functional role for U5 snRNA in spliced leader addition trans-splicing and the identification of novel Sm snRNPs
-
MARONEY, P.A., YU, M., JANKOWSKA, Y.T., and NILSEN, T.W., Direct analysis of nematode cis- and trans-spliceosomes: a functional role for U5 snRNA in spliced leader addition trans-splicing and the identification of novel Sm snRNPs. RNA 2: 735-745.
-
(2006)
RNA
, vol.2
, pp. 735-745
-
-
Maroney, P.A.1
Yu, M.2
Jankowska, Y.T.3
And Nilsen, T.W.4
-
163
-
-
17844385813
-
Structural implications of novel diversity in eucaryal RNase P RNA
-
MARQUEZ, S.M., HARRIS, J.K., KELLEY, S.T., BROWN, J.W., DAWSON, S.C., ROBERTS, E.C., and PACE, N.R., 2005. Structural implications of novel diversity in eucaryal RNase P RNA. RNA 11: 739-751.
-
(2005)
RNA
, vol.11
, pp. 739-751
-
-
Marquez, S.M.1
Harris, J.K.2
Kelley, S.T.3
Brown, J.W.4
Dawson, S.C.5
Roberts, E.C.6
Pacen, R.7
-
164
-
-
84885557017
-
Doxycycline-controlled splicing modulation by regulated antisense U7 snRNA expression cassettes
-
MARQUIS, J., KäMPFER, S.S., ANGEHRN, L., and SCHüMPERLI, D. Doxycycline-controlled splicing modulation by regulated antisense U7 snRNA expression cassettes. Gene Ther. MARZ, M., KIRSTEN, T., and STADLER, P. 2008 Evolution of spliceosomal snRNA genes in metazoan animals. J. Mol. Evol. MARZ, M., MOSIG, A., STADLER, B.M.R., and STADLER, P.F., U7 snRNAs: a computational survey. Geno. Prot. Bioinfo. 5: 187-195.
-
Gene Ther. MARZ, M., KIRSTEN, T., and STADLER, P. 2008 Evolution of spliceosomal snRNA genes in metazoan animals. J. Mol. Evol. MARZ, M., MOSIG, A., STADLER, B.M.R., and STADLER, P.F., U7 snRNAs: a computational survey. Geno. Prot. Bioinfo.
, vol.5
, pp. 187-195
-
-
Marquis, J.1
Kämpfer, S.S.2
Angehrn, L.3
Schümperli, D.4
-
165
-
-
19344366158
-
Metazoan replication-dependent histone mRNAs: a distinct set of RNA polymerase II transcripts
-
MARZLUFF, W.F., 2005. Metazoan replication-dependent histone mRNAs: a distinct set of RNA polymerase II transcripts. Curr. Opin. Cell. Biol. 17: 274-280.
-
(2005)
Curr. Opin. Cell. Biol.
, vol.17
, pp. 274-280
-
-
Marzluff, W.F.1
-
166
-
-
37149033830
-
The H19 noncoding RNA is essential for human tumor growth
-
MATOUK, I.J., DEGROOT, N., MEZAN, S., AYESH, S., ABU-LAIL, R., HOCHBERG, A., and GALUN, E., 2007. The H19 noncoding RNA is essential for human tumor growth. PLoS ONE 2: e845.
-
(2007)
PLoS ONE
, vol.2
-
-
Matouk, I.J.1
Degroot, N.2
Mezan, S.3
Ayesh, S.4
Abu-Lail, R.5
Hochberg, A.6
Galun, E.7
-
167
-
-
33646147563
-
Intergenic transcripts regulate the epigenetic state of rRNA genes
-
MAYER, C., SCHMITZ, K.M., LI, J., GRUMMT, I., and SANTORO, R., 2006. Intergenic transcripts regulate the epigenetic state of rRNA genes. Mol. Cell 22: 351-361.
-
(2006)
Mol. Cell
, vol.22
, pp. 351-361
-
-
Mayer, C.1
Schmitz, K.M.2
Li, J.3
Grummt, I.4
And Santoro, R.5
-
168
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
MERCER, T.R., DINGER, M.E., SUNKIN, S.M., MEHLER, M.F., and MATTICK, J.S., 2008. Specific expression of long noncoding RNAs in the mouse brain. Proc. Natl. Acad. Sci. USA 105: 716-721.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
Mehler, M.F.4
Mattick, J.S.5
-
169
-
-
41649108068
-
Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria
-
MEYER, M.M., ROTH, A., CHERVIN, S.M., GARCIA, G.A., and BREAKER, R.R., 2008. Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria. RNA 14: 685-695.
-
(2008)
RNA
, vol.14
, pp. 685-695
-
-
Meyer, M.M.1
Roth, A.2
Chervin, S.M.3
Garcia, G.A.4
And Breaker, R.R.5
-
170
-
-
51649089956
-
RNA-driven cyclindependent kinase regulation: when CDK9/cyclin T subunits of P-TEFb meet their ribonucleoprotein partners
-
MICHELS, A.A. and BENSAUDE, O., 2008. RNA-driven cyclindependent kinase regulation: when CDK9/cyclin T subunits of P-TEFb meet their ribonucleoprotein partners. Biotechnol. J. 3: 1022-1032.
-
(2008)
Biotechnol. J.
, vol.3
, pp. 1022-1032
-
-
Michels, A.A.1
Bensaude, O.2
-
171
-
-
4544339685
-
DISC1 and DISC2: discovering and dissecting molecular mechanisms underlying psychiatric illness
-
MILLAR, J.K., JAMES, R., BRANDON, N.J., and THOMSON, P.A., DISC1 and DISC2: discovering and dissecting molecular mechanisms underlying psychiatric illness. Ann. Med. 36: 367-378.
-
Ann. Med.
, vol.36
, pp. 367-378
-
-
Millar, J.K.1
James, R.2
Brandon, N.J.3
And Thomson, P.A.4
-
174
-
-
33845223334
-
A large-scale full-length cDNAanalysis to explore the budding yeast transcriptome
-
USA
-
MIURA, F., KAWAGUCHI, N., SESE, J., TOYODA, A., HATTORI, M., MORISHITA, S., and ITO, T., 2006. A large-scale full-length cDNAanalysis to explore the budding yeast transcriptome. Proc. Natl. Acad. Sci. USA 103: 17846-17851.
-
(2006)
Proc. Natl. Acad. Sci.
, vol.103
, pp. 17846-17851
-
-
Miura, F.1
Kawaguchi, N.2
Sese, J.3
Toyoda, A.4
Hattori, M.5
Morishita, S.6
Ito, T.7
-
175
-
-
0037145031
-
Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena
-
MOCHIZUKI, K., FINE, N.A., FUJISAWA, T., andGOROVSKY, M.A., Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena. Cell 110: 689-699.
-
Cell
, vol.110
, pp. 689-699
-
-
Mochizuki, K.1
Fine, N.A.2
Fujisawa, T.3
Andgorovsky, M.A.4
-
176
-
-
0037062958
-
The involvement ofRNA in ribosome function
-
MOORE, P.B. and STEITZ, T.A., 2002. The involvement ofRNA in ribosome function. Nature 418: 229-235.
-
(2002)
Nature
, vol.418
, pp. 229-235
-
-
Moore, P.B.1
Steitz, T.A.2
-
177
-
-
26944431987
-
Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli
-
MOORE, S.D. and SAUER, R.T., 2005. Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli. Mol Microbiol. 58: 456-466.
-
(2005)
Mol Microbiol.
, vol.58
, pp. 456-466
-
-
Moore, S.D.1
Sauer, R.T.2
-
178
-
-
34247103448
-
The tmRNA system for translational surveillance and ribosome rescue
-
MOORE, S.D. and SAUER, R.T., 2007. The tmRNA system for translational surveillance and ribosome rescue. Annu. Rev. Biochem. 76: 101-124.
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 101-124
-
-
Moore, S.D.1
Sauer, R.T.2
-
179
-
-
37249001791
-
Homology Search with fragmented nucleic acid sequence patterns
-
eds R. Giancarlo and S. Hannenhalli. Springer Verlag Berlin Vol. 4645 of Lecture Notes in Computer Science Heidelberg
-
MOSIG, A., CHEN, J.L., and STADLER, P.F., 2007a. Homology search with fragmented nucleic acid sequence patterns. In Algorithms in Bioinformatics (WABI 2007), Vol. 4645 of Lecture Notes in Computer Science (eds R. Giancarlo and S. Hannenhalli). Springer Verlag, Berlin, Heidelberg. pp. 335-345.
-
(2007)
Algorithms in Bioinformatics (WABI 2007)
, pp. 335-345
-
-
Mosig, A.1
Chen, J.L.2
And Stadler, P.F.3
-
180
-
-
34249742064
-
Evolution of the vertebrate Y RNA cluster
-
MOSIG, A., GUOFENG, M., STADLER, B.M.R., and STADLER, P.F., 2007b. Evolution of the vertebrate Y RNA cluster. Theory Biosci. 126: 9-14.
-
(2007)
Theory Biosci.
, vol.126
, pp. 9-14
-
-
Mosig, A.1
Guofeng, M.2
Stadler, B.M.R.3
And Stadler, P.F.4
-
181
-
-
33645702761
-
Fragrep: efficient search for fragmented patterns in genomic sequences
-
MOSIG, A., SAMEITH, K., and STADLER, P.F., 2005. Fragrep: efficient search for fragmented patterns in genomic sequences. Geno. Prot. Bioinfo. 4: 56-60.
-
(2005)
Geno. Prot. Bioinfo.
, vol.4
, pp. 56-60
-
-
Mosig, A.1
Sameith, K.2
And Stadler, P.F.3
-
182
-
-
39049155568
-
Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum
-
MOURIER, T., et al., 2008. Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum. Genome Res. 18: 281-292.
-
(2008)
Genome Res.
, vol.18
, pp. 281-292
-
-
Mourier, T.1
-
183
-
-
34250891308
-
Subtractive hybridization identifies novel differentially expressed ncRNA species in ebv-infected human B cells
-
MRáZEK, J., KREUTMAYER, S.B., GRäSSER, F.A., POLACEK, N., and HüTTENHOFER, A., 2007. Subtractive hybridization identifies novel differentially expressed ncRNA species in ebv-infected human B cells. Nucleic Acids Res. 35: e73.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Mrázek, J.1
Kreutmayer, S.B.2
Grässer, F.A.3
Polacek, N.4
Hüttenhofer, A.5
-
184
-
-
1542380523
-
The spinocerebellar ataxia 8 noncoding RNA causes neurodegeneration and associates with staufen in Drosophila
-
MUTSUDDI, M.,MARSHALL, C.M., BENZOW, K.A., KOOB, M.D., and REBAY, I., 2004. The spinocerebellar ataxia 8 noncoding RNA causes neurodegeneration and associates with staufen in Drosophila. Curr. Biol. 14: 302-308.
-
(2004)
Curr. Biol.
, vol.14
, pp. 302-308
-
-
Mutsuddi, M.1
Marshall, C.M.2
Benzow, K.A.3
Koob, M.D.4
Rebay, I.5
-
185
-
-
34548758619
-
A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions
-
NAKAMURA, T., NAITO, K., YOKOTA, N., SUGITA, C., and SUGITA, M., 2007. A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions. Plant Cell Physiol. 48: 1309-1318.
-
(2007)
Plant Cell Physiol.
, vol.48
, pp. 1309-1318
-
-
Nakamura, T.1
Naito, K.2
Yokota, N.3
Sugita, C.4
And Sugita, M.5
-
186
-
-
34250189924
-
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription
-
NAKAYA, H.I., AMARAL, R., LOURO, P.P., LOPES, A., FACHEL, A. A.,MOREIRA, Y.B., EL-JUNDI, T.A., da SILVA, A.M., REIS, E. M., and VERJOVSKI-ALMEIDA, S., 2007. Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome Biol. 8: R43.
-
(2007)
Genome Biol.
, vol.8
-
-
Nakaya, H.I.1
Amaral, R.2
Louro, P.P.3
Lopes, A.4
Fachel, A.A.5
Moreira, Y.B.6
El-Jundi, T.A.7
da Silva, A.M.8
Reis, E.M.9
Verjovski-Almeida, S.10
-
187
-
-
84885552770
-
Epstein-Barr virus-induced expression of a novel human vault RNA
-
NANDY, C., MRáZEK, J., STOIBER, H., GRäSSER, F.A., HüTTENHOFER, A., and POLACEK, N. 2008 Epstein-Barr virus-induced expression of a novel human vault RNA. J. Mol. Biol.
-
(2008)
J. Mol. Biol.
-
-
Nandy, C.1
Mrázek, J.2
Stoiber, H.3
Grässer, F.A.4
Hütparrott, A.M.5
Mathews M.B.tenhofer, A.6
Polacek, N.7
-
188
-
-
40149091702
-
Studies on the expression of 6S RNA from E
-
NEUSSER, T.,GILDEHAUS, N.,WURM, R., andWAGNER, R., 2008. Studies on the expression of 6S RNA from E. coli: involvement of regulators important for stress and growth adaptation. Biol. Chem. 389: 285-297.
-
(2008)
coli: involvement of regulators important for stress and growth adaptation. Biol. Chem.
, vol.389
, pp. 285-297
-
-
Neusser, T.1
Gildehaus, N.2
Wurm, R.3
Wagner, R.4
-
189
-
-
33846032330
-
Xist and the order of silencing
-
NG, K., PULLIRSCH, D., LEEB, M., andWUTZ, A., 2007. Xist and the order of silencing. EMBO Rep. 8: 34-39.
-
(2007)
EMBO Rep.
, vol.8
, pp. 34-39
-
-
Ng, K.1
Pullirsch, D.2
Leeb, M.3
Andwutz, A.4
-
190
-
-
6344263978
-
Microdeletion of LIT1 in familial Beckwith-Wiedemann syndrome
-
NIEMITZ, E.L., DEBAUN, M.R., FALLON, J., MURAKAMI, K., KUGOH, H., OSHIMURA, M., and FEINBERG, A.P., 2004. Microdeletion of LIT1 in familial Beckwith-Wiedemann syndrome. Am. J. Hum. Genet. 75: 844-849.
-
(2004)
Am. J. Hum. Genet.
, vol.75
, pp. 844-849
-
-
Niemitz, E.L.1
Debaun, M.R.2
Fallon, J.3
Murakami, K.4
Kugoh, H.5
O.Shimura, M.6
Feinberg, A.P.7
-
191
-
-
0344198459
-
The spliceosome: the most complex macromolecular machine in the cell?
-
NILSEN, T.W., 2003. The spliceosome: the most complex macromolecular machine in the cell? Bioessays 25: 1147-1149.
-
(2003)
Bioessays
, vol.25
, pp. 1147-1149
-
-
Nilsen, T.W.1
-
192
-
-
33645765576
-
Arole for the SmpB-SsrA system in Yersinia pseudotuberculosis pathogenesis
-
OKAN, N.A.,BLISKA, J., andKARZAI,A.W., 2006.Arole for the SmpB-SsrA system in Yersinia pseudotuberculosis pathogenesis. PLoS Pathog. 2: e6.
-
(2006)
PLoS Pathog.
, vol.2
-
-
Okan, N.A.1
Bliska, J.2
Andkarzai, A.W.3
-
193
-
-
18744418115
-
Expression and imprinting status of human PEG8/IGF2AS, a paternally expressed antisense transcript from the IGF2 locus, in Wilms' tumors
-
OKUTSU, T., et al., 2000. Expression and imprinting status of human PEG8/IGF2AS, a paternally expressed antisense transcript from the IGF2 locus, in Wilms' tumors. J. Biochem. 127: 475-483.
-
(2000)
J. Biochem.
, vol.127
, pp. 475-483
-
-
Okutsu, T.1
-
194
-
-
33847251953
-
-
PLoS Genet. 3: e1
-
PAGANO, A., CASTELNUOVO, M., TORTELLI, F., FERRARI, R., DIECI, G., and CANCEDDA, R., (2007) New small nuclear RNA gene-like transcriptional units as sources of regulatory transcripts. PLoS Genet. 3: e1.
-
(2007)
New small nuclear RNA gene-like transcriptional units as sources of regulatory transcripts
-
-
Pagano, A.1
Castelnuovo, M.2
Tortelli, F.3
Ferrari, R.4
Dieci, G.5
C.ANCEDDA, R.6
-
195
-
-
18244391988
-
U1 small nuclear RNP from Trypanosoma brucei: a minimal u1 snRNAwith unusual protein components
-
PALFI, Z., SCHIMANSKI, B., GüNZL, A., LCKE, S., and BINDEREIF, A., 2005. U1 small nuclear RNP from Trypanosoma brucei: a minimal u1 snRNAwith unusual protein components. Nucleic Acids Res. 33: 2493-2503.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2493-2503
-
-
Palfi, Z.1
Schimanski, B.2
Günzl, A.3
Lcke, S.4
And Bindereif, A.5
-
196
-
-
33846223294
-
Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA
-
PANZITT, K., et al., 2007. Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA. Gastroenterology 132: 330-342.
-
(2007)
Gastroenterology
, vol.132
, pp. 330-342
-
-
Panzitt, K.1
-
197
-
-
35548996309
-
Novel rapidly evolving hominidRNAs bind nuclear factor 90 and display tissue-restricted distribution
-
PARROTT, A.M. and MATHEWS, M.B., 2007. Novel rapidly evolving hominidRNAs bind nuclear factor 90 and display tissue-restricted distribution. Nucleic Acids Res. 35: 6249-6258.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6249-6258
-
-
Parrott, A.M.1
Mathews, M.B.2
-
198
-
-
0345169036
-
Splicing double: insights from the second spliceosome
-
PATEL, A.A. and STEITZ, J.A., 2003. Splicing double: insights from the second spliceosome. Nat. Rev. Mol. Cell Biol. 4: 960-970.
-
(2003)
Nat. Rev. Mol. Cell Biol.
, vol.4
, pp. 960-970
-
-
Patel, A.A.1
Steitz, J.A.2
-
199
-
-
17144393758
-
Retropseudogenes derived from human Ro/SS-A autoantigen- associated hY RNAs
-
PERREAULT, J., NOéL, J.-F., BRIéRE, F., COUSINEAU, B., LUCIER, J.-F., PERREAULT, J.-P., and BOIRE, G., 2005. Retropseudogenes derived from human Ro/SS-A autoantigen- associated hY RNAs. Nucleic Acids Res. 33: 2032-2041.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2032-2041
-
-
Perreault, J.1
Noél, J.-F.2
Briére, F.3
Cousineau, B.4
Lucier, J.-F.5
Perreault, J.-P.6
Boire, G.7
-
200
-
-
34249660747
-
The Ro associated Y RNAs in metazoans: evolution and diversification
-
PERREAULT, J., PERREAULT, J.-P., and BOIRE, G., 2007. The Ro associated Y RNAs in metazoans: evolution and diversification. Mol. Biol. Evol. 24: 1678-1689.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1678-1689
-
-
Perreault, J.1
Perreault, J.-P.2
And Boire, G.3
-
201
-
-
41649110311
-
Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders
-
PETTITT, J., MüLLER, B., STANSFIELD, I., and CONNOLLY, B., Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders. RNA 14: 760-770.
-
RNA
, vol.14
, pp. 760-770
-
-
Pettitt, J.1
Müller, B.2
Stansfield, I.3
And Connolly, B.4
-
202
-
-
40249104567
-
Role of non-coding RNA and heterochromatin in aneuploidy and cancer
-
PEZER, Z. and UGARKOVIć, D., 2008. Role of non-coding RNA and heterochromatin in aneuploidy and cancer. Semin Cancer Biol. 18: 123-130.
-
(2008)
Semin Cancer Biol.
, vol.18
, pp. 123-130
-
-
Pezer, Z.1
Ugarković, D.2
-
203
-
-
0036122682
-
Cloning of the mRNA of overexpression in colon carcinoma-1: a sequence overexpressed in a subset of colon carcinomas
-
PIBOUIN, L., VILLAUDY, J., FERBUS, D., MULERIS, M., PROSPéRI, M.-T., REMVIKOS, Y., and GOUBIN, G., 2002. Cloning of the mRNA of overexpression in colon carcinoma-1: a sequence overexpressed in a subset of colon carcinomas. Cancer Genet. Cytogenet. 133: 55-60.
-
(2002)
Cancer Genet. Cytogenet.
, vol.133
, pp. 55-60
-
-
Pibouin, L.1
Villaudy, J.2
Ferbus, D.3
Muleris, M.4
Prospéri, M.-T.5
R.Emvikos, Y.6
Goubin, G.7
-
204
-
-
23344445110
-
Identification and analysis of ribonuclease P and MRP RNAin a broad range of eukaryotes
-
PICCINELLI, P., ROSENBLAD, M.A., and SAMUELSSON, T., 2005. Identification and analysis of ribonuclease P and MRP RNAin a broad range of eukaryotes. Nucleic Acids Res. 33: 4485-4495.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4485-4495
-
-
Piccinelli, P.1
Rosenblad, M.A.2
And Samuelsson, T.3
-
205
-
-
0036842704
-
Trans-splicing in Drosophila
-
PIRROTTA, V., 2002. Trans-splicing in Drosophila. Bioessays 24: 988-991.
-
(2002)
Bioessays
, vol.24
, pp. 988-991
-
-
Pirrotta, V.1
-
206
-
-
0032786952
-
Isolation and characterization of a novel transcript embedded within HIRA, a gene deleted in DiGeorge syndrome
-
PIZZUTI, A., et al., 1999. Isolation and characterization of a novel transcript embedded within HIRA, a gene deleted in DiGeorge syndrome. Mol. Genet. Metab. 67: 227-235.
-
(1999)
Mol. Genet. Metab.
, vol.67
, pp. 227-235
-
-
Pizzuti, A.1
-
207
-
-
38549138987
-
The telomerase database
-
PODLEVSKY, J.D., BLEY, C.J.,OMANA, R.V., QI, X., and CHEN, J. J., 2008. The telomerase database. Nucleic Acids Res. 36: D339-D343.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Podlevsky, J.D.1
Bley, C.J.2
Omana, R.V.3
Qi, X.4
Chen, J.5
-
208
-
-
0141869748
-
Novel putative nonproteincoding RNA gene from 11q14 displays decreased expression in brains of patients with schizophrenia
-
POLESSKAYA, O.O.,HAROUTUNIAN,V.,DAVIS, K.L.,HERNANDEZ, I., and SOKOLOV, B.P., 2003. Novel putative nonproteincoding RNA gene from 11q14 displays decreased expression in brains of patients with schizophrenia. J. Neurosci. Res. 74: 111-122.
-
(2003)
J. Neurosci. Res.
, vol.74
, pp. 111-122
-
-
Polesskaya, O.O.1
Haroutunian, V.2
Davis, K.L.3
Hernandez, I.4
Sokolov, B.P.5
-
209
-
-
19544371202
-
Spliced leader RNA-mediated trans-splicing in phylum Rotifera
-
POUCHKINA-STANTCHEVA, N.N. and TUNNACLIFFE, A., 2005. Spliced leader RNA-mediated trans-splicing in phylum Rotifera. Mol. Biol. Evol. 22: 1482-1489.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1482-1489
-
-
Pouchkina-Stantcheva, N.N.1
Tunnacliffe, A.2
-
210
-
-
33846169089
-
Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum
-
PRASANTH, K.V. and SPECTOR, D.L., 2007. Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes Dev. 21: 11-42.
-
(2007)
Genes Dev.
, vol.21
, pp. 11-42
-
-
Prasanth, K.V.1
Spector, D.L.2
-
211
-
-
33845886422
-
Identification of a large noncoding RNA in extremophilic eubacteria
-
PUERTA-FERNANDEZ, E., BARRICK, J.E., ROTH, A., and BREAKER, R.R., 2006. Identification of a large noncoding RNA in extremophilic eubacteria. Proc. Natl. Acad. Sci. USA 103: 19490-19495.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 19490-19495
-
-
Puerta-Fernandez, E.1
Barrick, J.E.2
Roth, A.3
And Breaker, R.R.4
-
212
-
-
43049088477
-
Life without RNase P
-
RANDAU, L., SCHRöDER, I., and SöLL, D., 2008. Life without RNase P. Nature 453: 120-123.
-
(2008)
Nature
, vol.453
, pp. 120-123
-
-
Randau, L.1
SchröDer, I.2
And Söll, D.3
-
213
-
-
30044434769
-
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
-
RAVASI, T., et al., 2006. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res. 16: 11-19.
-
(2006)
Genome Res.
, vol.16
, pp. 11-19
-
-
Ravasi, T.1
-
214
-
-
84897585709
-
In-line probing analysis of riboswitches
-
REGULSKI, E.E. and BREAKER, R.R., 2008. In-line probing analysis of riboswitches. Methods Mol. Biol. 419: 53-67.
-
(2008)
Methods Mol. Biol.
, vol.419
, pp. 53-67
-
-
Regulski, E.E.1
Breaker, R.R.2
-
215
-
-
34247130376
-
The structure and function of small nucleolar ribonucleoproteins
-
REICHOW, S.L.,HAMMA, T., FERRé-D'AMARé, A.R., andVARANI, G., 2007. The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res. 35: 1452-1464.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1452-1464
-
-
Reichow, S.L.1
Hamma, T.2
Ferré-D'amaré, A.R.3
Andvarani, G.4
-
216
-
-
33947359039
-
-
BMC Mol. Biol. 8: 15
-
RICCARDO, S., TORTORIELLO, G., GIORDANO, E., TURANO, M., and FURIA, M., (2007) The coding/non-coding overlapping architecture of the gene encoding the Drosophila pseudouridine synthase. BMC Mol. Biol. 8: 15.
-
(2007)
The coding/non-coding overlapping architecture of the gene encoding the Drosophila pseudouridine synthase
-
-
Riccardo, S.1
Tortoriello, G.2
Giordano, E.3
Turano, M.4
And F.URIA, M.5
-
217
-
-
33645296102
-
Cotranscriptional recognition of human intronic box H/ ACA snoRNAs occurs in a splicing-independent manner
-
RICHARD, P., KISS, M.A., DARZACQ, X., and KISS, T., 2006. Cotranscriptional recognition of human intronic box H/ ACA snoRNAs occurs in a splicing-independent manner. Mol. Cell. Biol. 26: 2540-2549.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 2540-2549
-
-
Richard, P.1
Kiss, M.A.2
Darzacq, X.3
And Kiss, T.4
-
218
-
-
50849083181
-
Quality control of bacterialmRNAdecoding and decay
-
RICHARDS, J., SUNDERMEIER, T., SVETLANOV, A., and KARZAI, A. W., 2008. Quality control of bacterialmRNAdecoding and decay. Biochim. Biophys. Acta 1779: 574-582.
-
(2008)
Biochim. Biophys. Acta
, vol.1779
, pp. 574-582
-
-
Richards, J.1
Sundermeier, T.2
Svetlanov, A.3
Karzai, A.W.4
-
219
-
-
0031777019
-
NB4S, a member of the TBC1 domain family of genes, is truncated as a result of a constitutional t(1;10)(p22;q21) chromosome translocation in a patient with stage 4S neuroblastoma
-
ROBERTS, T., CHERNOVA, O., and COWELL, J.K., 1998. NB4S, a member of the TBC1 domain family of genes, is truncated as a result of a constitutional t(1;10)(p22;q21) chromosome translocation in a patient with stage 4S neuroblastoma. Hum. Mol. Genet. 7: 1169-1178.
-
(1998)
Hum. Mol. Genet.
, vol.7
, pp. 1169-1178
-
-
Roberts, T.1
Chernova, O.2
And Cowell, J.K.3
-
220
-
-
34250744007
-
Computational RNomics of drosophilids
-
ROSE, D., HACKERMüLLER, J., WASHIETL, S., FINDEIß, S., REICHE, K., HERTEL, J., STADLER, P.F., and PROHASKA, S. J., 2007. Computational RNomics of drosophilids. BMC Genomics 8: 406.
-
(2007)
BMC Genomics
, vol.8
, pp. 406
-
-
Rose, D.1
Hackermüller, J.2
Washietl, S.3
Findeiß, S.4
Reiche, K.5
Hertel, J.6
Stadler, P.F.7
Prohaska, S.J.8
-
221
-
-
84885505946
-
Duplicated RNA genes in teleost fish genome
-
ROSE, D., JöRIS, J., HACKERMüLLER, J., REICHE, K., LI, Q., and STADLER, P.F., 2008. Duplicated RNA genes in teleost fish genomes. J. Bioinf. Comp. Biol., In press. ROZHDESTVENSKY, T.S., KOPYLOV, A.M., BROSIUS, J., and HüTTENHOFER, A., 2001. Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure. RNA 7: 722-730.
-
(2008)
J. Bioinf. Comp. Biol., In press. ROZHDESTVENSKY, T.S., KOPYLOV, A.M., BROSIUS, J., and HüTTENHOFER, A., 2001. Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure. RNA
, vol.7
, pp. 722-730
-
-
Rose, D.1
Jöris, J.2
Hackermüller, J.3
Reiche, K.4
Li, Q.5
S.TADLER, P.F.6
-
222
-
-
33750336226
-
An early evolutionary origin for the minor spliceosome
-
RUSSELL, A.G., CHARETTE, J.M., SPENCER, D.F., and GRAY, M. W., 2006. An early evolutionary origin for the minor spliceosome. Nature 443: 863-866.
-
(2006)
Nature
, vol.443
, pp. 863-866
-
-
Russell, A.G.1
Charette, J.M.2
Spencer, D.F.3
Gray, M.W.4
-
223
-
-
46149097613
-
Diamonds in the rough: mRNAlike non-coding RNAs
-
RYMARQUIS, L.A., KASTENMAYER, J.P., HüTTENHOFER, A.G., and GREEN, P.J., 2008. Diamonds in the rough: mRNAlike non-coding RNAs. Trends Plant. Sci. 13: 329-334.
-
(2008)
Trends Plant. Sci.
, vol.13
, pp. 329-334
-
-
Rymarquis, L.A.1
Kastenmayer, J.P.2
Hüttenhofer, A.G.3
And G.REEN, P.J.4
-
224
-
-
0032125707
-
The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization
-
SAMARSKY, D.A., FOURNIER, M.J., SINGER, R.H., and BERTRAND, E., 1998. The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization. EMBO J. 17: 3747-3757.
-
(1998)
EMBO J.
, vol.17
, pp. 3747-3757
-
-
Samarsky, D.A.1
Fournier, M.J.2
Singer, R.H.3
And Bertrand, E.4
-
225
-
-
33644514069
-
Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax
-
SANCHEZ-ELSNER, T., GOU, D., KREMMER, E., and SAUER, F., Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax. Science 311: 1118-1123.
-
Science
, vol.311
, pp. 1118-1123
-
-
Sanchez-Elsner, T.1
Gou, D.2
Kremmer, E.3
And Sauer, F.4
-
226
-
-
57149094023
-
snoRNA, a novel precursor of microRNA in Giardia lamblia
-
SARAIYA, A.A. and WANG, C.C., 2008. snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog. 4: e1000224.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Saraiya, A.A.1
Wang, C.C.2
-
227
-
-
33846259286
-
Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation
-
SAXENA, A., LAHAV, T.,HOLLAND, N.,AGGARWAL, G.,ANUPAMA, A.,HUANG,Y.,VOLPIN, H.,MYLER, P.J., and ZILBERSTEIN, D., Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation. Mol. Biochem. Parasitol. 152: 53-65.
-
Mol. Biochem. Parasitol.
, vol.152
, pp. 53-65
-
-
Saxena, A.1
Lahav, T.2
Holland, N.3
Aggarwal, G.4
Anupama, A.5
Huang, Y.6
Volpin, H.7
Myler, P.J.8
Zilberstein, D.9
-
228
-
-
43749105204
-
Retroposed SNOfall: a mammalian-wide comparison of platypus snoRNAs
-
SCHMITZ, J., ZEMANN, A., CHURAKOV, G., KUHL, H., GRüTZNER, F., REINHARDT, R., and BROSIUS, J., 2008. Retroposed SNOfall: a mammalian-wide comparison of platypus snoRNAs. Genome Res. 18: 1005-1010.
-
(2008)
Genome Res.
, vol.18
, pp. 1005-1010
-
-
Schmitz, J.1
Zemann, A.2
Churakov, G.3
Kuhl, H.4
Grützner, F.5
Reinhardt, R.6
Brosius, J.7
-
229
-
-
38849111756
-
Developmentally regulated transcription of mammalian telomeres by DNAdependent RNA polymerase II
-
SCHOEFTNER, S. and BLASCO, M.A., 2008. Developmentally regulated transcription of mammalian telomeres by DNAdependent RNA polymerase II. Nat. Cell Biol. 10: 228-236.
-
(2008)
Nat. Cell Biol.
, vol.10
, pp. 228-236
-
-
Schoeftner, S.1
Blasco, M.A.2
-
230
-
-
0042333223
-
Mitochondrial RNase P RNAs in ascomycete fungi: lineage- specific variations in RNA secondary structure
-
SEIF, E.R., FORGET, L., MARTIN, N.C., and LANG, B.F., 2003. Mitochondrial RNase P RNAs in ascomycete fungi: lineage- specific variations in RNA secondary structure. RNA 9: 1073-1083.
-
(2003)
RNA
, vol.9
, pp. 1073-1083
-
-
Seif, E.R.1
Forget, L.2
Martin, N.C.3
And Lang, B.F.4
-
231
-
-
34548778155
-
Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
-
SERGANOV,A. and PATEL, D.J., 2007. Ribozymes, riboswitches and beyond: regulation of gene expression without proteins. Nat. Rev. Genet. 8: 776-790.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 776-790
-
-
Serganov, A.1
Patel, D.J.2
-
233
-
-
35948970194
-
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
-
SHARMA, C.M., DARFEUILLE, F., PLANTINGA, T.H., and VOGEL, J., 2007. A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev. 21: 2804-2817.
-
(2007)
Genes Dev.
, vol.21
, pp. 2804-2817
-
-
Sharma, C.M.1
Darfeuille, F.2
Plantinga, T.H.3
And Vogel, J.4
-
234
-
-
33748581324
-
Comprehensive splicesite analysis using comparative genomics
-
SHETH, N., ROCA, X.,HASTINGS, M.L., ROEDER, T.,KRAINER, A. R., and SACHIDANANDAM, R., 2006. Comprehensive splicesite analysis using comparative genomics. Nucleic Acids Res. 34: 3955-3967.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3955-3967
-
-
Sheth, N.1
Roca, X.2
Hastings, M.L.3
Roeder, T.4
Krainer, A.R.5
Sachidanandam, R.6
-
235
-
-
0037705427
-
Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25
-
SILVA, A.P.M., et al., 2003. Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. Gene 310: 49-57.
-
(2003)
Gene
, vol.310
, pp. 49-57
-
-
Silva, A.P.M.1
-
236
-
-
34548291568
-
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
-
SONE, M.,HAYASHI, T., TARUI, H.,AGATA, K., TAKEICHI, M., and NAKAGAWA, S., 2007. The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. J. Cell Sci. 120: 2498-2506.
-
(2007)
J. Cell Sci.
, vol.120
, pp. 2498-2506
-
-
Sone, M.1
Hayashi, T.2
Tarui, H.3
Agata, K.4
Takeichi, M.5
Nakagawa, S.6
-
237
-
-
0034751157
-
Translational and structural requirements of the early nodulin gene enod40, a short-open reading frame-containing RNA, for elicitation of a cell-specific growth response in the alfalfa root cortex
-
SOUSA, C., JOHANSSON, C., CHARON, C.,MANYANI, H., SAUTTER, C., KONDOROSI, A., and CRESPI, M., 2001. Translational and structural requirements of the early nodulin gene enod40, a short-open reading frame-containing RNA, for elicitation of a cell-specific growth response in the alfalfa root cortex. Mol. Cell. Biol. 21: 354-366.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 354-366
-
-
Sousa, C.1
Johansson, C.2
Charon, C.3
Manyani, H.4
Sautter, C.5
K.Ondorosi, A.6
Crespi, M.7
-
238
-
-
12944252955
-
PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer
-
SRIKANTAN, V., et al., 2000. PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer. Proc. Natl. Acad. Sci. USA 97: 12216-12221.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12216-12221
-
-
Srikantan, V.1
-
239
-
-
84885522541
-
Evolution of vault RNA
-
STADLER, P.F., et al., 2008. Evolution of vault RNAs. J. Mol. Biol., Submitted. STORZ, G., OPDYKE, J.A., and WASSARMAN, K.M., 2006. Regulating bacterial transcription with small RNAs. Cold Spring Harb. Symp. Quant. Biol. 71: 269-273.
-
(2008)
J. Mol. Biol., Submitted. STORZ, G., OPDYKE, J.A., and WASSARMAN, K.M., 2006. Regulating bacterial transcription with small RNAs. Cold Spring Harb. Symp. Quant. Biol.
, vol.71
, pp. 269-273
-
-
Stadler, P.F.1
-
240
-
-
36549083651
-
RNA catalysis: ribozymes, ribosomes, and riboswitches
-
STROBEL, S. A. and COCHRANE, J. C., 2007. RNA catalysis: ribozymes, ribosomes, and riboswitches. Curr. Opin. Chem. Biol. 11: 636-643.
-
(2007)
Curr. Opin. Chem. Biol.
, vol.11
, pp. 636-643
-
-
Strobel, S.A.1
Cochrane, J.C.2
-
241
-
-
0038136962
-
Metabolite-binding RNA domains are present in the genes of eukaryotes
-
SUDARSAN, N., BARRICK, J.E., and BREAKER, R.R., 2003. Metabolite-binding RNA domains are present in the genes of eukaryotes. RNA 9: 644-647.
-
(2003)
RNA
, vol.9
, pp. 644-647
-
-
Sudarsan, N.1
Barrick, J.E.2
Breaker, R.R.3
-
242
-
-
33749986680
-
Tandem riboswitch architectures exhibit complex gene control functions
-
SUDARSAN, N., HAMMOND, M.C., BLOCK, K.F., WELZ, R., BARRICK, J.E., ROTH, A., and BREAKER, R.R., 2006. Tandem riboswitch architectures exhibit complex gene control functions. Science 314: 300-304.
-
(2006)
Science
, vol.314
, pp. 300-304
-
-
Sudarsan, N.1
Hammond, M.C.2
Block, K.F.3
Welz, R.4
Barrick, J.E.5
Roth, A.6
Breaker, R.R.7
-
243
-
-
0029975533
-
Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome
-
SUTHERLAND, H.F., et al., 1996. Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome. Am. J. Hum. Genet. 59: 23-31.
-
(1996)
Am. J. Hum. Genet.
, vol.59
, pp. 23-31
-
-
Sutherland, H.F.1
-
244
-
-
40449110935
-
The enigmatic world of mRNA-like ncRNAs: their role in human evolution and in human diseases
-
SZéLL, M., BATA-CSöRGO, Z., and KEMéNY, L., 2008. The enigmatic world of mRNA-like ncRNAs: their role in human evolution and in human diseases. Semin. Cancer Biol. 18: 141-148.
-
(2008)
Semin. Cancer Biol.
, vol.18
, pp. 141-148
-
-
Széll, M.1
Bata-csörgo, Z.2
And Kemény, L.3
-
245
-
-
24944565971
-
A new frontier for molecular medicine: noncoding RNAs
-
SZYMANSKI, M., BARCISZEWSKA, M.Z., ERDMANN, V.A., and BARCISZEWSKI, J., 2005. A new frontier for molecular medicine: noncoding RNAs. Biochim. Biophys. Acta 1756: 65-75.
-
(2005)
Biochim. Biophys. Acta
, vol.1756
, pp. 65-75
-
-
Szymanski, M.1
Barciszewska, M.Z.2
Erdmann, V.A.3
And B.ARCISZEWSKI, J.4
-
246
-
-
31944444262
-
miR-155/BIC as an oncogenic microRNA
-
TAM, W. and DAHLBERG, J.E., 2006. miR-155/BIC as an oncogenic microRNA. Genes Chromosomes Cancer 45: 211-212.
-
(2006)
Genes Chromosomes Cancer
, vol.45
, pp. 211-212
-
-
Tam, W.1
Dahlberg, J.E.2
-
247
-
-
0034055532
-
Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15), of human B-cell lymphoma
-
TANAKA, R., SATOH, H.,MORIYAMA, M., SATOH, K.,MORISHITA, Y., YOSHIDA, S.,WATANABE, T.,NAKAMURA,Y., andMORI, S., Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15), of human B-cell lymphoma. Genes Cells 5: 277-287.
-
Genes Cells
, vol.5
, pp. 277-287
-
-
Tanaka, R.1
Satoh, H.2
Moriyama, M.3
Satoh, K.4
Morishita, Y.5
Yoshida, S.6
Watanabe, T.7
Nakamura, Y.8
Mori, S.9
-
248
-
-
13144269598
-
Identification of novel non-codingRNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
-
TANG, T.-H., POLACEK, N., ZYWICKI, M., HUBER, H., BRUGGER, K., GARRETT, R., BACHELLERIE, J.P., and HüTTENHOFER, A., Identification of novel non-codingRNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus. Mol. Microbiol. 55: 469-481.
-
Mol. Microbiol.
, vol.55
, pp. 469-481
-
-
Tang, T.-H.1
Polacek, N.2
Zywicki, M.3
Huber, H.4
Brugger, K.5
G.Arrett, R.6
Bachellerie, J.P.7
Hüttenhofer, A.8
-
249
-
-
0037082426
-
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing
-
TANG, T.H., ROZHDESTVENSKY, T.S., D'ORVAL, B.C., BORTOLIN, M.L., HUBER, H., CHARPENTIER, B., BRANLANT, C., BACHELLERIE, J.P., BROSIUS, J., and HüTTENHOFER, A., 2002. RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Res. 30: 921-930.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 921-930
-
-
Tang, T.H.1
Rozhdestvensky, T.S.2
D'Orval, B.C.3
Bortolin, M.L.4
Huber, H.5
Charpentier, B.6
Branlant, C.7
Bachellerie, J.P.8
Brosius, J.9
Hüttenhofer, A.10
-
250
-
-
0036176517
-
Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin
-
TERNS, M.P. and TERNS, R.M., 2002. Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin. Gene Expr. 10: 17-39.
-
(2002)
Gene Expr.
, vol.10
, pp. 17-39
-
-
Terns, M.P.1
Terns, R.M.2
-
251
-
-
0034650186
-
Conserved features of Y RNAs: a comparison of experimentally derived secondary structures
-
TEUNISSEN, S.W.M., KRUITHOF, M.J.M., FARRIS, A.D., HARLEY, J.B., van VENROOIJ, W.J., and PRUIJN, G.J.M., 2000. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. Nucleic Acids Res. 28: 610-619.
-
(2000)
Nucleic Acids Res.
, vol.28
-
-
Teunissen, S.W.M.1
Kruithof, M.J.M.2
Farris, A.D.3
Harley, J.B.4
van V.Enrooij, W.J.5
Pruijn, G.J.M.6
-
252
-
-
34250305146
-
The ENCODE Project Consortium
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
The ENCODE Project Consortium, 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
-
253
-
-
34250623956
-
A population study of the minicircles in Trypanosoma cruzi: predicting guide RNAs in the absence of empirical RNA editing
-
THOMAS, S., MARTINEZ, L.I.T., WESTENBERGER, S.J., and STURM, N.R., 2007. A population study of the minicircles in Trypanosoma cruzi: predicting guide RNAs in the absence of empirical RNA editing. BMC Genomics 8: 133.
-
(2007)
BMC Genomics
, vol.8
, pp. 133
-
-
Thomas, S.1
Martinez, L.I.T.2
Westenberger, S.J.3
Sturm, N.R.4
-
254
-
-
34247101054
-
Small noncoding RNAs controlling pathogenesis
-
TOLEDO-ARANA, A., REPOILA, F., and COSSART, P., 2007. Small noncoding RNAs controlling pathogenesis. Curr. Opin. Microbiol. 10: 182-188.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 182-188
-
-
Toledo-Arana, A.1
Repoila, F.2
Cossart, P.3
-
255
-
-
33745590704
-
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
-
Erratum Genome Res. 16:1439 (2006)
-
TORARINSSON, E., SAWERA, M., HAVGAARD, J., FREDHOLM, M., and GORODKIN, J., 2006. Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure. Genome Res. 16: 885-889. Erratum Genome Res. 16:1439 (2006).
-
(2006)
Genome Res.
, vol.16
, pp. 885-889
-
-
Torarinsson, E.1
Sawera, M.2
Havgaard, J.3
Fredholm, M.4
And G.ORODKIN, J.5
-
256
-
-
33744774173
-
6S RNA regulation of pspF transcription leads to altered cell survival at high pH
-
TROTOCHAUD, A.E. and WASSARMAN, K.M., 2006. 6S RNA regulation of pspF transcription leads to altered cell survival at high pH. J. Bacteriol. 188: 3936-3943
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3936-3943
-
-
Trotochaud, A.E.1
Wassarman, K.M.2
-
257
-
-
0035109393
-
Non-coding snoRNA host genes in Drosophila: expression strategies for modification guide snoRNAs
-
TYCOWSKI, K.T. and STEITZ, J.A., 2001. Non-coding snoRNA host genes in Drosophila: expression strategies for modification guide snoRNAs. Eur. J. Cell Biol. 80: 119-125.
-
(2001)
Eur. J. Cell Biol.
, vol.80
, pp. 119-125
-
-
Tycowski, K.T.1
Steitz, J.A.2
-
258
-
-
0037829618
-
A novel pseudoknot element is essential for the action of a yeast telomerase
-
TZFATI, Y., KNIGHT, Z., ROY, J., and BLACKBURN, E.H., 2003. A novel pseudoknot element is essential for the action of a yeast telomerase. Genes Dev. 17: 1779-1788.
-
(2003)
Genes Dev.
, vol.17
, pp. 1779-1788
-
-
Tzfati, Y.1
Knight, Z.2
Roy, J.3
And Blackburn, E.H.4
-
259
-
-
35548966204
-
Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates
-
ULYANOV, N.B., SHEFER, K., JAMES, T.L., and TZFATI, Y., 2007. Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates. Nucleic Acids Res. 35: 6150-6160.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6150-6160
-
-
Ulyanov, N.B.1
Shefer, K.2
James, T.L.3
And Tzfati, Y.4
-
260
-
-
33744820625
-
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
-
UZILOV, A.V., KEEGAN, J.M., and MATHEWS, D.H., 2006. Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. BMC Bioinformatics 7: 173.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 173
-
-
Uzilov, A.V.1
Keegan, J.M.2
And Mathews, D.H.3
-
261
-
-
36248936068
-
Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing
-
VALADKHAN, S.,MOHAMMADI, A.,WACHTEL, C., andMANLEY, J. L., 2007. Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing. RNA 13: 2300-2311.
-
(2007)
RNA
, vol.13
, pp. 2300-2311
-
-
Valadkhan, S.1
Mohammadi, A.2
Wachtel, C.3
Manley, J.L.4
-
262
-
-
0029295552
-
Caenorhabditis elegans embryos contain only one major species of Ro RNP
-
van HORN, D.J., EISENBERG, D., O'BRIEN, C.A., andWOLIN, S. L., 1995. Caenorhabditis elegans embryos contain only one major species of Ro RNP. RNA 1: 293-303.
-
(1995)
RNA
, vol.1
, pp. 293-303
-
-
Van Horn, D.J.1
Eisenberg, D.2
O'Brien, C.A.3
Andwolin, S.L.4
-
263
-
-
0141526367
-
The vault complex
-
van ZON, A., MOSSINK, M.H., SCHEPER, R.J., SONNEVELD, P., and WIEMER, E.A.C., 2003. The vault complex. Cell. Mol. Life Sci. 60: 1828-1837.
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, pp. 1828-1837
-
-
Van Zon, A.1
Mossink, M.H.2
Scheper, R.J.3
Sonneveld, P.4
And W.IEMER, E.A.C.5
-
264
-
-
33845899117
-
The position of yeast snoR.NA-coding regions within host introns is essential for their biosynthesis and for efficient splicing of the host pre-mRNA
-
VINCENTI, S., CHIARA, V.D., BOZZONI, I., and PRESUTTI, C., The position of yeast snoRNA-coding regions within host introns is essential for their biosynthesis and for efficient splicing of the host pre-mRNA. RNA 13: 138-150.
-
RNA
, vol.13
, pp. 138-150
-
-
Vincenti, S.1
Chiara, V.D.2
Bozzoni, I.3
And Presutti, C.4
-
265
-
-
29044443534
-
How to find small non-coding RNAs in bacteria
-
VOGEL, J. and SHARMA, C.M., 2005. How to find small non-coding RNAs in bacteria. Biol. Chem. 386: 1219-1238.
-
(2005)
Biol. Chem.
, vol.386
, pp. 1219-1238
-
-
Vogel, J.1
Sharma, C.M.2
-
266
-
-
54049135184
-
Generation of synthetic RNA-based thermosensors
-
WALDMINGHAUS, T., KORTMANN, J., GESING, S., and NARBERHAUS, F., 2008. Generation of synthetic RNA-based thermosensors. Biol. Chem. 389: 1319-1326.
-
(2008)
Biol. Chem.
, vol.389
, pp. 1319-1326
-
-
Waldminghaus, T.1
Kortmann, J.2
Gesing, S.3
Narberhaus, F.4
-
267
-
-
33645747326
-
Ribonuclease P: the evolution of an ancient RNA enzyme
-
WALKER, S.C. and ENGELKE, D.R., 2006. Ribonuclease P: the evolution of an ancient RNA enzyme. Crit. Rev. Biochem. Mol. Biol. 41: 77-102.
-
(2006)
Crit. Rev. Biochem. Mol. Biol.
, vol.41
, pp. 77-102
-
-
Walker, S.C.1
Engelke, D.R.2
-
268
-
-
42149091618
-
Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine
-
WANG, J.X. andBREAKER, R.R., 2008. Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine. Biochem. Cell Biol. 86: 157-168.
-
(2008)
Biochem. Cell Biol.
, vol.86
, pp. 157-168
-
-
Wang, J.X.1
Breaker, R.R.2
-
269
-
-
57849138429
-
Evidence for common short natural trans sense-antisense pairing between transcripts from protein coding genes
-
WANG, P., YIN, S., ZHANG, Z., XIN, D., HU, L., KONG, X., and HURST, L.D., 2008. Evidence for common short natural trans sense-antisense pairing between transcripts from protein coding genes. Genome Biol. 9: R169.
-
(2008)
Genome Biol.
, vol.9
-
-
Wang, P.1
Yin, S.2
Zhang, Z.3
Xin, D.4
Hu, L.5
Kong, X.6
Hurst, L.D.7
-
270
-
-
27944464131
-
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
-
WASHIETL, S., HOFACKER, I.L., LUKASSER, M., HüTTENHOFER, A., and STADLER, P.F., 2005. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Nat. Biotech. 23: 1383-1390.
-
(2005)
Nat. Biotech.
, vol.23
, pp. 1383-1390
-
-
Washietl, S.1
Hofacker, I.L.2
Lukasser, M.3
Hüttenhofer, A.4
Stadler, P.F.5
-
271
-
-
34250331200
-
Structured RNAs in the ENCODE selected regions of the human genome
-
WASHIETL, S., et al., 2007. Structured RNAs in the ENCODE selected regions of the human genome. Genome Res. 17: 852-864.
-
(2007)
Genome Res.
, vol.17
, pp. 852-864
-
-
Washietl, S.1
-
272
-
-
0025831431
-
Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function
-
WASSARMAN, D.A. and STEITZ, J.A., 1991. Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function. Mol. Cell. Biol. 11: 3432-3445.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 3432-3445
-
-
Wassarman, D.A.1
Steitz, J.A.2
-
273
-
-
34247163202
-
6S RNA: a small RNA regulator of transcription
-
WASSARMAN, K.M., 2007. 6S RNA: a small RNA regulator of transcription. Curr. Opin. Microbiol. 10: 164-168.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 164-168
-
-
Wassarman, K.M.1
-
274
-
-
33845450357
-
Synthesis-mediated release of a small RNA inhibitor of RNA polymerase
-
WASSARMAN, K.M. and SAECKER, R.M., 2006. Synthesis-mediated release of a small RNA inhibitor of RNA polymerase. Science 314: 1601-1603.
-
(2006)
Science
, vol.314
, pp. 1601-1603
-
-
Wassarman, K.M.1
Saecker, R.M.2
-
276
-
-
37849049354
-
Identification and characterization of the Schizosaccharomyces pombe TER1 telomerase RNA
-
WEBB, C.J. and ZAKIAN, V.A., 2008. Identification and characterization of the Schizosaccharomyces pombe TER1 telomerase RNA. Nat. Struct. Mol. Biol. 15: 34-42.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 34-42
-
-
Webb, C.J.1
Zakian, V.A.2
-
277
-
-
33846012547
-
Mammalian small nucleolar RNAs are mobile genetic elements
-
WEBER, M.J., 2006. Mammalian small nucleolar RNAs are mobile genetic elements. PLoS Genet. 2: e205.
-
(2006)
PLoS Genet.
, vol.2
-
-
Weber, M.J.1
-
278
-
-
0033153297
-
Guided tours: from precursor snoRNA to functional snoRNP
-
WEINSTEIN, L.B. and STEITZ, J.A., 1999. Guided tours: from precursor snoRNA to functional snoRNP. Curr. Opin. Cell Biol. 11: 378-384.
-
(1999)
Curr. Opin. Cell Biol.
, vol.11
, pp. 378-384
-
-
Weinstein, L.B.1
Steitz, J.A.2
-
279
-
-
38949143289
-
In silico identification and characterization of mRNA-like noncoding transcripts in Medicago truncatula
-
WEN, J., PARKER, B.J., and WEILLER, G.F., 2007. In silico identification and characterization of mRNA-like noncoding transcripts in Medicago truncatula. In Silico Biol. 7: 485-505.
-
(2007)
In Silico Biol.
, vol.7
, pp. 485-505
-
-
Wen, J.1
Parker, B.J.2
Weiller, G.F.3
-
280
-
-
0028124726
-
Identification of a novel paternally expressed gene in the Prader-- Willi syndrome region
-
WEVRICK, R., KERNS, J.A., and FRANCKE, U., 1994. Identification of a novel paternally expressed gene in the Prader-- Willi syndrome region. Hum. Mol. Genet. 3: 1877-1882.
-
(1994)
Hum. Mol. Genet.
, vol.3
, pp. 1877-1882
-
-
Wevrick, R.1
Kerns, J.A.2
Francke, U.3
-
281
-
-
68349090253
-
Regulation Of the mammalian epigenome by long noncoding R.NAs
-
WHITEHEAD, J., PANDEY, G.K., and KANDURI, C. 2008 Regulation of the mammalian epigenome by long noncoding RNAs. Biochim. Biophys. Acta, DOI: 10.1016/j. bbagen.2008.10.007.
-
(2008)
Biochim. Biophys. Acta
-
-
Whitehead, J.1
Pandey, G.K.2
Kanduri, C.3
-
282
-
-
55449131096
-
Noncoding transcription by RNA polymerase PAnd ol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
-
WIERZBICKI, A.T., HAAG, J.R., and PIKAARD, C.S., 2008. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 135: 635-648.
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
283
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
WILHELM, B.T.,MARGUERAT, S.,WATT, S., SCHUBERT, F.,WOOD, V., GOODHEAD, I., PENKETT, C.J., ROGERS, J., and BäHLER, J., Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 453: 1239-1243.
-
Nature
, vol.453
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.J.7
Rogers, J.8
Bähler, J.9
-
284
-
-
26844431946
-
Splicing of a rare class of introns by the U12-dependent spliceosome
-
WILL, C.L. and LüHRMANN, R., 2005. Splicing of a rare class of introns by the U12-dependent spliceosome. Biol. Chem. 386And: 713-724.
-
(2005)
Biol. Chem.
, vol.386
, pp. 713-724
-
-
Will, C.L.1
Lührmann, R.2
-
285
-
-
34247598415
-
Inferring non-coding RNA .Oamilies and classes by means of genome-scale structure-based clustering
-
WILL, S., MISSAL, K., HOFACKER, I.L., STADLER, P.F., and BACKOFEN, R., 2007. Inferring non-coding RNA families and classes ameans of genome-scale structure-based clustering. PLoS Comp. Biol. 3: e65.
-
(2007)
PLoS Comp. Biol.
, vol.3
-
-
Will, S.1
Missal, K.2
Hofacker, I.L.3
Stadler, P.F.4
B.Ackofen, R.5
-
286
-
-
29044449362
-
6S RNA: an ancient regulator of bacterial RNA polymerase rediscovered
-
WILLKOMM, D.K. and HARTMANN, R.K., 2005. 6S RNA: an ancient regulator of bacterial RNA polymerase rediscovered. Biol. Chem. 386: 1273-1277.
-
(2005)
Biol. Chem.
, vol.386
, pp. 1273-1277
-
-
Willkomm, D.K.1
Hartmann, R.K.2
-
287
-
-
34249911458
-
An important piece of the RNase P jigsaw solved
-
WILLKOMM, D.K. and HARTMANN, R.K., 2007. An important piece of the RNase P jigsaw solved. Trends Biochem. Sci. 32: 247-250.
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 247-250
-
-
Willkomm, D.K.1
Hartmann, R.K.2
-
288
-
-
56349113455
-
30 end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA
-
WILUSZ, J.E.And , FCKOFEN S.M., and SPECTOR, D.L., 2008. 30 end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA. Cell 135: 919-932.
-
(2008)
Cell
, vol.135
, pp. 919-932
-
-
Wilusz, J.E.1
Freier, S.M.2
Spector, D.L.3
-
289
-
-
0035364954
-
B-cell neoplasia associated gene with multiple splicing (BCMS): the candidate B-CLL gene on 13q14 comprises more than 560 kb covering all critical regions
-
WOLF, S.,MERTENS, D., SCHAFFNER, C., KORZ, C., DöHNER, H., STILGENBAUER, S., and LICHTER, P., 2001. B-cell neoplasia associated gene with multiple splicing (BCMS): the candidate B-CLL gene on 13q14 comprises more than 560 kb covering all critical regions. Hum. Mol. Genet. 10: 1275-1285.
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 1275-1285
-
-
Wolf, S.1
Mertens, D.2
Schaffner, C.3
Korz, C.4
Döhner, H.5
S.Tilgenbauer, S.6
Lichter, P.7
-
290
-
-
34247645736
-
RNAse MRPand the RNA processing cascade in the eukaryotic ancestor
-
WOODHAMS, M.D., STADLER, P.F., PEAnd NNY, D., and COLLINS, L.J., RNAse MRPand the RNA processing cascade in the eukaryotic ancestor. BMC Evol. Biol. 7: S13.
-
BMC Evol. Biol.
, vol.7
-
-
Woodhams, M.D.1
Stadler, P.F.2
Penny, D.3
Collins, L.J.4
-
291
-
-
0038218026
-
RNAs templating chromatin structure for dosage compensation in animals
-
WUTZ, A., 2003. RNAs templating chromatin structure for dosage compensation in animals. Bioessays 25: 434-442.
-
(2003)
Bioessays
, vol.25
, pp. 434-442
-
-
Wutz, A.1
-
292
-
-
38349138949
-
Size variation and structural conservation of vertebrate telomeraseRNA
-
XIE,M.,MOSIG, A.,QI, X., LI, Y., STADLER, P.F., and CHEN, J.J.- L., 2008. Size variation and structural conservation of vertebrate telomeraseRNA. J. Biol. Chem. 283: 2049-2059.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 2049-2059
-
-
Xie, M.1
Mosig, A.2
Qi, X.3
Li, Y.4
Stadler, P.F.5
Chen, J.-L.6
-
293
-
-
33644926132
-
Phenotypic characterization of endometrial stromal sarcoma of the uterus
-
YAMADA, K., KAAnd NO, J., TSUNODA, H., YOSHIKAWA, H., OKUBO, C., ISHIYAMA, T., and NOGUCHI, M., 2006. Phenotypic characterization of endometrial stromal sarcoma of the uterus. Cancer Sci. 97: 106-112.
-
(2006)
Cancer Sci.
, vol.97
, pp. 106-112
-
-
Yamada, K.1
Kano, J.2
Tsunoda, H.3
Yoshikawa, H.4
Okubo, C.5
I.Shiyama, T.6
Noguchi, M.7
-
294
-
-
13744262101
-
Identification of 20 snoRNA-like RNAs from the primitive eukaryote Gardia lamblia
-
YANG, C.-Y., ZHOU, H., LUO, J., and QU, L.-H., 2005. Identification of 20 snoRNA-like RNAs from the primitive eukaryote Gardia lamblia. Biochem. Biophys. Res. Commun. 328: 1224-1231.
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.328
, pp. 1224-1231
-
-
Yang, C.-Y.1
Zhou, H.2
Luo, J.3
Qu, L.-H.4
-
295
-
-
3843143954
-
Anew role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene
-
YANO, Y., SAITO, R., YOSHIDA, N., YOSHIKI, A., WYNSHAWBORIS, A., TOMITA, M., and HIROTSUNE, S., 2004.Anew role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene. J. Mol. Med. 82: 414-422.
-
(2004)
J. Mol. Med.
, vol.82
, pp. 414-422
-
-
Yano, Y.1
Saito, R.2
Yoshida, N.3
Yoshiki, A.4
Wynshawboris, A.5
Tomita, M.6
Hirotsune, S.7
-
296
-
-
0038581529
-
Programmed DNA deletion as an RNA-guided system of genome defense
-
YAO, M.C., FULLER, P., and XI, X., 2003. Programmed DNA deletion as an RNA-guided system of genome defense. Science 300: 1517-1518.
-
(2003)
Science
, vol.300
, pp. 1517-1518
-
-
Yao, M.C.1
Fuller, P.2
Xi, X.3
-
297
-
-
56149111804
-
Identification of the human homolog of the imprinted mouse Air non-coding RNA
-
YOTOVA, I.Y., VLATKOVIC, I.M., PAULER, F.M.,WARCZOK, K.E., AMBROS, P.F., OSHIMURA, M., THEUSSL, H.C., GESSLER, M., WAGNER, E.F., and BARLOW, D.P., 2008. Identification of the human homolog of the imprinted mouse Air non-coding RNA. Genomics 92: 464-473.
-
(2008)
Genomics
, vol.92
, pp. 464-473
-
-
Yotova, I.Y.1
Vlatkovic, I.M.2
Pauler, F.M.3
Warczok, K.E.4
Ambros, P.F.5
Oshimura, M.6
Theussl, H.C.7
Gessler, M.8
Wagner, E.F.9
Barlow, D.P.10
-
298
-
-
15944384666
-
The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus
-
ZAGO, M.A., DENNIS, P.P., and OMER, A.D., 2005. The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. MiAnd crobiol. 55: 1812-1828.
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 1812-1828
-
-
Zago, M.A.1
Dennis, P.P.2
Omer, A.D.3
-
299
-
-
25844513780
-
Fragile X mental retardation protein (FMRP) binds specifically to the brain cytoplasmic RNAs BC1/BC200 via a novel RNAbinding motif
-
ZALFA, F.,ADINOLFI, S.,NAPOLI, I.,KüHN-HöLSKEN, E.,URLAUB, H., ACHSEL, T., PASTORE, A., and BAGNI, C., 2005. Fragile X mental retardation protein (FMRP) binds specifically to the brain cytoplasmic RNAs BC1/BC200 via a novel RNAbinding motif. J. Biol. Chem. 280: 33403-33410.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 33403-33410
-
-
Zalfa, F.1
Adinolfi, S.2
Napoli, I.3
Kühn-Hölsken, E.4
Urlaub, H.5
Achsel, T.6
Pastore, A.7
Bagni, C.8
-
300
-
-
3042798454
-
Yeast telomeraseRNA: a flexible scaffold for protein subunits
-
ZAPPULLA, D.C. andCECH, T.R., 2004.Yeast telomeraseRNA: a flexible scaffold for protein subunits. Proc. Natl. Acad. Sci. USA 101: 10024-10029.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10024-10029
-
-
Zappulla, D.C.1
Cech, T.R.2
-
301
-
-
33646922629
-
Evolution of small nucleolar RNAs in nematodes
-
ZEMANN, A., OP DE BEKKE, A., KIEFMANN, M., BROSIUS, J., and SCHMITZ, J., 2006. Evolution of small nucleolar RNAs in nematodes. Nucleic Acids Res. 34: 2676-2685.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2676-2685
-
-
Zemann, A.1
Op De Bekke, A.2
Kiefmann, M.3
Brosius, J.4
Schmitz, J.5
-
302
-
-
34249855228
-
DecipheringRNA structural diversity and systematic phylogeny from microbial metagenomes
-
ZHU,Y., PULUKKUNAT,D.K., and LI,Y., 2007.DecipheringRNA structural diversity and systematic phylogeny from microbial metagenomes. Nucleic Acids Res. 35: 2283-2294.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2283-2294
-
-
Zhu, Y.1
Pulukkunat, D.K.2
Li, Y.3
-
303
-
-
11144313663
-
A Nomenclature For All Signal Recognition Particle Rnas
-
ZWIEB, C., van NUES, R.W., ROSENBLAD, M.A., BROWN, J.D., and SAMUELSON, T., 2005. A nomenclature for all signal recognition particle RNAs. RNA 11: 7-13.
-
(2005)
Rna
, vol.11
, pp. 7-13
-
-
Zwieb, C.1
Van Nues, R.W.2
Rosenblad, M.A.3
Brown, J.D.4
S.Amuelson, T.5
|