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Volumn 4, Issue 1, 2006, Pages 56-60

Fragrep: An efficient search tool for fragmented patterns in genomic sequences

Author keywords

Dictyoatelium discoideum; Fragmented pattern; Fragrep; Non coding RNA detection

Indexed keywords

RIBONUCLEASE MRP; RIBONUCLEASE P; RIBONUCLEOPROTEIN; RNA BINDING PROTEIN; RNA DERIVATIVE; UNCLASSIFIED DRUG; UNTRANSLATED RNA; Y RNA;

EID: 33645702761     PISSN: 16720229     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1672-0229(06)60017-X     Document Type: Article
Times cited : (21)

References (12)
  • 1
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T.M. and Eddy, S.R. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 2
    • 0035890840 scopus 로고    scopus 로고
    • RNAMotif, an RNA secondary structure definition and search algorithm
    • Macke, T.J., et al. 2001. RNAMotif, an RNA secondary structure definition and search algorithm. Nucleic Acids Res. 29: 4724-4735.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4724-4735
    • Macke, T.J.1
  • 3
    • 0035834489 scopus 로고    scopus 로고
    • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
    • Gautheret, D. and Lambert, A. 2001. Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J. Mol. Biol. 313: 1003-1011.
    • (2001) J. Mol. Biol. , vol.313 , pp. 1003-1011
    • Gautheret, D.1    Lambert, A.2
  • 4
    • 2942607685 scopus 로고    scopus 로고
    • A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    • Eddy, S.R. 2002. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics 3: 18.
    • (2002) BMC Bioinformatics , vol.3 , pp. 18
    • Eddy, S.R.1
  • 5
    • 0033557343 scopus 로고    scopus 로고
    • Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis
    • Farris, A.D., et al. 1999. Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis. Nucleic Acids Res. 27: 1070-1078.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1070-1078
    • Farris, A.D.1
  • 6
    • 0034650186 scopus 로고    scopus 로고
    • Conserved features of Y RNAs: A comparison of experimentally derived secondary structures
    • Teunissen, S.W. 2000. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. Nucleic Acids Res. 28: 610-619.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 610-619
    • Teunissen, S.W.1
  • 7
    • 0037986643 scopus 로고    scopus 로고
    • Identification of conserved vault RNA expression elements and a non-expressed mouse vault RNA gene
    • Kickhoefer, V.A., et al. 2003. Identification of conserved vault RNA expression elements and a non-expressed mouse vault RNA gene. Gene 309: 65-70.
    • (2003) Gene , vol.309 , pp. 65-70
    • Kickhoefer, V.A.1
  • 8
    • 23844553096 scopus 로고    scopus 로고
    • A discriminative model for identifying spatial cis-regulatory modules
    • Segal, E. and Sharan, R. 2005. A discriminative model for identifying spatial cis-regulatory modules. J. Comput. Biol. 12: 822-834.
    • (2005) J. Comput. Biol. , vol.12 , pp. 822-834
    • Segal, E.1    Sharan, R.2
  • 9
    • 3242877502 scopus 로고    scopus 로고
    • BioOptimizer: A Bayesian scoring function approach to motif discovery
    • Jensen, S.T. and Liu, J.S. 2004. BioOptimizer: a Bayesian scoring function approach to motif discovery. Bioinformatics 20: 1557-1564.
    • (2004) Bioinformatics , vol.20 , pp. 1557-1564
    • Jensen, S.T.1    Liu, J.S.2
  • 10
    • 4644319241 scopus 로고    scopus 로고
    • Bipartite pattern discovery by entropy minimization-based multiple local alignment
    • Bi, C. and Rogan, P.K. 2004. Bipartite pattern discovery by entropy minimization-based multiple local alignment. Nucleic Acids Res. 32: 4979-4991.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4979-4991
    • Bi, C.1    Rogan, P.K.2
  • 11
    • 4344560867 scopus 로고    scopus 로고
    • Novel non-coding RNAs in Dictyostelium discoideum and their expression during development
    • Aspegren, A., et al. 2004. Novel non-coding RNAs in Dictyostelium discoideum and their expression during development. Nucleic Acids Res. 32: 4646-4656.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4646-4656
    • Aspegren, A.1
  • 12
    • 0347125228 scopus 로고    scopus 로고
    • dictyBase: A new Dictyostelium discoideum genome database
    • Kreppel, L., et al. 2004. dictyBase: a new Dictyostelium discoideum genome database. Nucleic Acids Res. 32: D332-333.
    • (2004) Nucleic Acids Res. , vol.32
    • Kreppel, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.