메뉴 건너뛰기




Volumn 6, Issue 1, 2009, Pages 5-8

A survey of nematode SmY RNAs

Author keywords

ncRNA; Nematodes; RNA secondary structure; SmY; Trans splicing

Indexed keywords

RNA;

EID: 62549141048     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.6.1.7634     Document Type: Article
Times cited : (19)

References (26)
  • 1
    • 0029853505 scopus 로고    scopus 로고
    • Direct analysis of nematode cis and trans-spliceosomes: A functional role for U5 snRNA in spliced leader addition trans-splicing and the identification of novel Sm snRNPs
    • Maroney PA, Yu YT, Jankowska M and Nilsen TW. Direct analysis of nematode cis and trans-spliceosomes: a functional role for U5 snRNA in spliced leader addition trans-splicing and the identification of novel Sm snRNPs. RNA 1996; 2:735-45.
    • (1996) RNA , vol.2 , pp. 735-745
    • Maroney, P.A.1    Yu, Y.T.2    Jankowska, M.3    Nilsen, T.W.4
  • 2
    • 33947732940 scopus 로고    scopus 로고
    • A novel family of C. elegans snRNPs contains proteins associated with trans-splicing
    • MacMorris M, Kumar M, Lasda E, Larsen A, Kraemer B and Blumenthal T. A novel family of C. elegans snRNPs contains proteins associated with trans-splicing. RNA 2007; 13:511-20.
    • (2007) RNA , vol.13 , pp. 511-520
    • MacMorris, M.1    Kumar, M.2    Lasda, E.3    Larsen, A.4    Kraemer, B.5    Blumenthal, T.6
  • 7
    • 34047240607 scopus 로고    scopus 로고
    • Query-dependent banding (QDB) for faster RNA similarity searches
    • Nawrocki EP and Eddy SR. Query-dependent banding (QDB) for faster RNA similarity searches. PLoS Comput Biol 2007; 3:e56.
    • (2007) PLoS Comput Biol , vol.3
    • Nawrocki, E.P.1    Eddy, S.R.2
  • 8
    • 0032509302 scopus 로고    scopus 로고
    • The C. elegans Genome Sequencing Consortium. Genome sequence of the nematode C. elegans: A platform for investigating biology
    • The C. elegans Genome Sequencing Consortium. Genome sequence of the nematode C. elegans: A platform for investigating biology. Science 1998; 282:2012-8.
    • (1998) Science , vol.282 , pp. 2012-2018
  • 10
    • 4243088097 scopus 로고    scopus 로고
    • Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clark L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DHA, Fulton LA, Fulton RE, Griffiths Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullkin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wie C, Willey D, Wilson RK, Durbin R and Waterston RH. The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics. PLoS Biol 2003; 1:166-92.
    • Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clark L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DHA, Fulton LA, Fulton RE, Griffiths Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullkin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wie C, Willey D, Wilson RK, Durbin R and Waterston RH. The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics. PLoS Biol 2003; 1:166-92.
  • 13
    • 34648836102 scopus 로고    scopus 로고
    • Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyumand T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML and Scott AL. Draft genome of the filarial nematode parasite Brugia malayi. Science 2007; 317:1756-60
    • Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyumand T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML and Scott AL. Draft genome of the filarial nematode parasite Brugia malayi. Science 2007; 317:1756-60.
  • 15
    • 84871219030 scopus 로고    scopus 로고
    • Otto W, Will S and Backofen R. Structural local multiple alignment of RNA. In M. Schroeder, editor, GCB'08: German Conference on Bioinformatics. GI 2008; In press.
    • Otto W, Will S and Backofen R. Structural local multiple alignment of RNA. In M. Schroeder, editor, GCB'08: German Conference on Bioinformatics. GI 2008; In press.
  • 17
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 2001; 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 19
    • 2242464840 scopus 로고    scopus 로고
    • Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, Kawashima T, Lemaire P, Martinez D, Meinertzhagen IA, Necula S, Nonaka M, Putnam N, Rash S, Saiga H, Satake M, Terry A, Yamada L, Wang HG, Awazu S, Azumi K, Boore J, Branno M, Chin-Bow S, DeSantis R, Doyle S, Francino P, Keys DN, Haga S, Hayashi H, Hino K, Imai KS, Inaba K, Kano S, Kobayashi K, Kobayashi M, Lee BI, Makabe KW, Manohar C, Matassi G, Medina M, Mochizuki Y, Mount S, Morishita T, Miura S, Nakayama A, Nishizaka S, Nomoto H, Ohta F, Oishi K, Rigoutsos I, Sano M, Sasaki A, Sasakura Y, Shoguchi E, Shin-i T, Spagnuolo A, Stainier D, Suzuki MM, Tassy O, Takatori N, Tokuoka M, Yagi K, Yoshizaki F, Wada S, Zhang C, Hyatt PD, Larimer F, Detter C, Doggett N, Glavina T, Hawkins T, Richardson P, Lucas S, Kohara Y, Levine M, Satoh N and Rokhsar DS. The draft genome of Ciona intestinalis: Insights into chordate and ver
    • Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, Kawashima T, Lemaire P, Martinez D, Meinertzhagen IA, Necula S, Nonaka M, Putnam N, Rash S, Saiga H, Satake M, Terry A, Yamada L, Wang HG, Awazu S, Azumi K, Boore J, Branno M, Chin-Bow S, DeSantis R, Doyle S, Francino P, Keys DN, Haga S, Hayashi H, Hino K, Imai KS, Inaba K, Kano S, Kobayashi K, Kobayashi M, Lee BI, Makabe KW, Manohar C, Matassi G, Medina M, Mochizuki Y, Mount S, Morishita T, Miura S, Nakayama A, Nishizaka S, Nomoto H, Ohta F, Oishi K, Rigoutsos I, Sano M, Sasaki A, Sasakura Y, Shoguchi E, Shin-i T, Spagnuolo A, Stainier D, Suzuki MM, Tassy O, Takatori N, Tokuoka M, Yagi K, Yoshizaki F, Wada S, Zhang C, Hyatt PD, Larimer F, Detter C, Doggett N, Glavina T, Hawkins T, Richardson P, Lucas S, Kohara Y, Levine M, Satoh N and Rokhsar DS. The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins. Science 2002; 298:2157-67.
  • 20
    • 15244363004 scopus 로고    scopus 로고
    • SL trans-splicing: Easy come or easy go?
    • Hastings KE. SL trans-splicing: Easy come or easy go? Trends Genet 2005; 21:240-7.
    • (2005) Trends Genet , vol.21 , pp. 240-247
    • Hastings, K.E.1
  • 21
    • 85011941045 scopus 로고    scopus 로고
    • Blumenthal T. Trans-splicing and operons. In The C. elegans Research Community, editor, WormBook. http://www.wormbook.org 2005.
    • Blumenthal T. Trans-splicing and operons. In The C. elegans Research Community, editor, WormBook. http://www.wormbook.org 2005.
  • 22
    • 41649110311 scopus 로고    scopus 로고
    • Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders
    • Pettitt J, Müller B, Stansfield I and Connolly B. Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders. RNA 2008; 14:760-70.
    • (2008) RNA , vol.14 , pp. 760-770
    • Pettitt, J.1    Müller, B.2    Stansfield, I.3    Connolly, B.4
  • 23
    • 0025287361 scopus 로고
    • Herpesvirus saimiri U RNAs are expressed and assembled into ribonucleoprotein particles in the absence of other viral genes
    • Lee SI and Steitz JA. Herpesvirus saimiri U RNAs are expressed and assembled into ribonucleoprotein particles in the absence of other viral genes. J Virol 1990; 64:3905-15.
    • (1990) J Virol , vol.64 , pp. 3905-3915
    • Lee, S.I.1    Steitz, J.A.2
  • 24
    • 34248335771 scopus 로고    scopus 로고
    • Comparison of the cryptic nematode species Caenorhabditis brenneri sp.n. and C. remanei (Nematoda: Rhabditidae) with the stem species pattern of the Caenorhabditis Elegans group
    • Sudhaus W and Kiontke K. Comparison of the cryptic nematode species Caenorhabditis brenneri sp.n. and C. remanei (Nematoda: Rhabditidae) with the stem species pattern of the Caenorhabditis Elegans group. Zootaxa 2007; 1456:45-62.
    • (2007) Zootaxa , vol.1456 , pp. 45-62
    • Sudhaus, W.1    Kiontke, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.