-
1
-
-
0035997350
-
Eukaryotic ribonuclease P: A plurality of ribonucleoprotein enzymes
-
Xiao,S., Scott,F., Fierke,C.A. and Engelke,D.R. (2002) Eukaryotic ribonuclease P: A plurality of ribonucleoprotein enzymes. Annu. Rev. Biochem., 71, 165-189.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 165-189
-
-
Xiao, S.1
Scott, F.2
Fierke, C.A.3
Engelke, D.R.4
-
2
-
-
0028244439
-
The POP1 gene encodes a protein component common to the RNase MRP and RNase P ribonucleoproteins
-
Lygerou,Z., Mitchell,P., Petfalski,E., Seraphin,B. and Tollervey,D. (1994) The POP1 gene encodes a protein component common to the RNase MRP and RNase P ribonucleoproteins. Genes Dev., 8, 1423-1433.
-
(1994)
Genes Dev.
, vol.8
, pp. 1423-1433
-
-
Lygerou, Z.1
Mitchell, P.2
Petfalski, E.3
Seraphin, B.4
Tollervey, D.5
-
3
-
-
0027367147
-
Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae
-
Schmitt,M.E. and Clayton,D.A. (1993) Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae. Mol. Cell. Biol., 13, 7935-7941.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 7935-7941
-
-
Schmitt, M.E.1
Clayton, D.A.2
-
4
-
-
0029981894
-
Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro
-
Lygerou,Z., Allmang,C., Tollervey,D. and Seraphin,B. (1996) Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro. Science, 272, 268-270.
-
(1996)
Science
, vol.272
, pp. 268-270
-
-
Lygerou, Z.1
Allmang, C.2
Tollervey, D.3
Seraphin, B.4
-
5
-
-
0028054796
-
The RNA of RNase MRP is required for normal processing of ribosomal RNA
-
Chu,S., Archer,R.H., Zengel,J.M. and Lindahl,L. (1994) The RNA of RNase MRP is required for normal processing of ribosomal RNA. Proc. Natl Acad. Sci. USA, 91, 659-663.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 659-663
-
-
Chu, S.1
Archer, R.H.2
Zengel, J.M.3
Lindahl, L.4
-
6
-
-
1642430571
-
RNase MRP cleaves the CLB2 mRNA to promote cell cycle progression: Novel method of mRNA degradation
-
Gill,T., Cai,T., Aulds,J., Wierzbicki,S. and Schmitt,M.E. (2004) RNase MRP cleaves the CLB2 mRNA to promote cell cycle progression: Novel method of mRNA degradation. Mol. Cell. Biol., 24, 945-953.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 945-953
-
-
Gill, T.1
Cai, T.2
Aulds, J.3
Wierzbicki, S.4
Schmitt, M.E.5
-
7
-
-
0036021365
-
The Saccharomyces cerevisiae RNase mitochondrial RNA processing is critical for cell cycle progression at the end of mitosis
-
Cai,T., Aulds,J., Gill,T., Cerio,M. and Schmitt,M.E. (2002) The Saccharomyces cerevisiae RNase mitochondrial RNA processing is critical for cell cycle progression at the end of mitosis. Genetics 161, 1029-1042.
-
(2002)
Genetics
, vol.161
, pp. 1029-1042
-
-
Cai, T.1
Aulds, J.2
Gill, T.3
Cerio, M.4
Schmitt, M.E.5
-
8
-
-
0142178048
-
Genetic changes in the RNA components of RNase MRP and RNase P in Schmid metaphyseal chondrodysplasia
-
Ridanpaa,M., Ward,L.M., Rockas,S., Sarkioja,M., Makela,H., Susic,M., Glorieux,F.H., Cole,W.G. and Makitie,O. (2003) Genetic changes in the RNA components of RNase MRP and RNase P in Schmid metaphyseal chondrodysplasia. J. Med. Genet., 40, 741-746.
-
(2003)
J. Med. Genet.
, vol.40
, pp. 741-746
-
-
Ridanpaa, M.1
Ward, L.M.2
Rockas, S.3
Sarkioja, M.4
Makela, H.5
Susic, M.6
Glorieux, F.H.7
Cole, W.G.8
Makitie, O.9
-
9
-
-
0025183518
-
Similar cage-shaped structures for the RNA components of all ribonuclease P and ribonuclease MRP enzymes
-
Forster,A.C. and Altman,S. (1990) Similar cage-shaped structures for the RNA components of all ribonuclease P and ribonuclease MRP enzymes. Cell, 62, 407-409.
-
(1990)
Cell
, vol.62
, pp. 407-409
-
-
Forster, A.C.1
Altman, S.2
-
10
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada,C., Gardiner,K., Marsh,T., Pace,N. and Altman,S. (1983) The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell, 35, 849-857.
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
11
-
-
0028962136
-
Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme
-
Pace,N.R. and Brown,J.W. (1995) Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme. J. Bacteriol. 177, 1919-1928.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1919-1928
-
-
Pace, N.R.1
Brown, J.W.2
-
12
-
-
6044275739
-
Basis for structural diversity in homologous RNAs
-
Krasilnikov,A.S., Xiao,Y., Pan,T. and Mondragon,A. (2004) Basis for structural diversity in homologous RNAs. Science, 306, 104-107.
-
(2004)
Science
, vol.306
, pp. 104-107
-
-
Krasilnikov, A.S.1
Xiao, Y.2
Pan, T.3
Mondragon, A.4
-
13
-
-
0037434709
-
Crystal structure of the specificity domain of ribonuclease P
-
Krasilnikov,A.S., Yang,X., Pan,T. and Mondragon,A. (2003) Crystal structure of the specificity domain of ribonuclease P. Nature, 421, 760-764.
-
(2003)
Nature
, vol.421
, pp. 760-764
-
-
Krasilnikov, A.S.1
Yang, X.2
Pan, T.3
Mondragon, A.4
-
14
-
-
0032473358
-
Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs
-
Chen,J.L., Nolan,J.M., Harris,M.E. and Pace,N.R. (1998) Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs. EMBO J., 17 1515-1525.
-
(1998)
EMBO J.
, vol.17
, pp. 1515-1525
-
-
Chen, J.L.1
Nolan, J.M.2
Harris, M.E.3
Pace, N.R.4
-
15
-
-
0036273255
-
Phylogenetic analysis of the structure of RNase MRP RNA in yeasts
-
Li,X., Frank,D.N., Pace,N., Zengel,J.M. and Lindahl,L. (2002) Phylogenetic analysis of the structure of RNase MRP RNA in yeasts. RNA, 8, 740-751.
-
(2002)
RNA
, vol.8
, pp. 740-751
-
-
Li, X.1
Frank, D.N.2
Pace, N.3
Zengel, J.M.4
Lindahl, L.5
-
16
-
-
0029959585
-
A conserved RNA motif involved in divalent cation utilization by nuclear RNase P
-
Pagan-Ramos,E., Lee,Y. and Engelke,D.R. (1996) A conserved RNA motif involved in divalent cation utilization by nuclear RNase P. RNA, 2, 1100-1109.
-
(1996)
RNA
, vol.2
, pp. 1100-1109
-
-
Pagan-Ramos, E.1
Lee, Y.2
Engelke, D.R.3
-
17
-
-
0033230172
-
Design and isolation of ribozyme-substrate pairs using RNase P-based ribozymes containing altered substrate binding sites
-
Mobley,E.M. and Pan,T. (1999) Design and isolation of ribozyme-substrate pairs using RNase P-based ribozymes containing altered substrate binding sites. Nucleic Acids Res., 27, 4298-4304.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4298-4304
-
-
Mobley, E.M.1
Pan, T.2
-
18
-
-
0029949699
-
Domain structure of the ribozyme from eubacterial ribonuclease P
-
Loria,A. and Pan,T. (1996) Domain structure of the ribozyme from eubacterial ribonuclease P. RNA, 2, 551-563.
-
(1996)
RNA
, vol.2
, pp. 551-563
-
-
Loria, A.1
Pan, T.2
-
19
-
-
0035339722
-
Modular construction for function of a ribonucleoprotein enzyme: The catalytic domain of Bacillus subtilis RNase P complexed with B. subtilis RNase P protein
-
Loria,A. and Pan,T. (2001) Modular construction for function of a ribonucleoprotein enzyme: The catalytic domain of Bacillus subtilis RNase P complexed with B. subtilis RNase P protein. ucleic Acids Res., 29, 1892-1897.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1892-1897
-
-
Loria, A.1
Pan, T.2
-
20
-
-
0032546728
-
Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis
-
Massire,C., Jaeger,L. and Westhof,E. (1998) Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis. J. Mol. Biol., 279, 773-793.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 773-793
-
-
Massire, C.1
Jaeger, L.2
Westhof, E.3
-
22
-
-
0036682153
-
Prediction of signal recognition particle RNA genes
-
Regalia,M., Rosenblad,M.A. and Samuelsson,T. (2002) Prediction of signal recognition particle RNA genes. Nucleic Acids Res., 30, 3368-3377.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3368-3377
-
-
Regalia, M.1
Rosenblad, M.A.2
Samuelsson, T.3
-
23
-
-
2442651537
-
Identification and comparative analysis of components from the signal recognition particle in protozoa and fungi
-
Rosenblad,M.A., Zwieb,C. and Samuelsson,T. (2004) Identification and comparative analysis of components from the signal recognition particle in protozoa and fungi. BMC Genomics, 5, 5.
-
(2004)
BMC Genomics
, vol.5
, pp. 5
-
-
Rosenblad, M.A.1
Zwieb, C.2
Samuelsson, T.3
-
24
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
25
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zuker,M. (1989) On finding all suboptimal foldings of an RNA molecule. Science, 244, 48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
26
-
-
0036301332
-
Secondary structure prediction for aligned RNA sequences
-
Hofacker,I.L., Fekete,M. and Stadler,P.F. (2002) Secondary structure prediction for aligned RNA sequences. J. Mol. Biol., 319, 1059-1066.
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 1059-1066
-
-
Hofacker, I.L.1
Fekete, M.2
Stadler, P.F.3
-
27
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks,G.E., Hon,G., Chandonia,J.M. and Brenner,S.E. (2004) WebLogo: A sequence logo generator. Genome Res., 14, 1188-1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
28
-
-
2942607685
-
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
-
Eddy,S.R. (2002) A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics, 3, 18.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 18
-
-
Eddy, S.R.1
-
29
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones,S., Bateman,A., Marshall,M., Khanna,A. and Eddy,S.R. (2003) Rfam: An RNA family database. Nucleic Acids Res., 31, 439-441.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
30
-
-
4644225942
-
In search of RNase P RNA from microbial genomes
-
Li,Y. and Altman,S. (2004) In search of RNase P RNA from microbial genomes. RNA, 10, 1533-1540.
-
(2004)
RNA
, vol.10
, pp. 1533-1540
-
-
Li, Y.1
Altman, S.2
-
31
-
-
0028272315
-
RNA sequence analysis using covariance models
-
Eddy,S.R. and Durbin,R. (1994) RNA sequence analysis using covariance models. Nucleic Acids Res., 22, 2079-2088.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2079-2088
-
-
Eddy, S.R.1
Durbin, R.2
-
32
-
-
13444252847
-
Rfam: Annotating non-coding RNAs in complete genomes
-
Griffiths-Jones,S., Moxon,S., Marshall,M., Khanna,A., Eddy,S.R. and Bateman,A. (2005) Rfam: Annotating non-coding RNAs in complete genomes. Nucleic Acids Res., 33, D121-D124.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
33
-
-
0344298926
-
The Ribonuclease P Database
-
Brown,J.W. (1999) The Ribonuclease P Database. Nucleic Acids Res., 27, 314.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 314
-
-
Brown, J.W.1
-
34
-
-
13444267841
-
NONCODE: An integrated knowledge database of non-coding RNAs
-
Liu,C., Bai,B., Skogerbo,G., Cai,L., Deng,W., Zhang,Y., Bu,D., Zhao,Y. and Chen,R. (2005) NONCODE: An integrated knowledge database of non-coding RNAs. Nucleic Acids Res., 33, D112-D115.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Liu, C.1
Bai, B.2
Skogerbo, G.3
Cai, L.4
Deng, W.5
Zhang, Y.6
Bu, D.7
Zhao, Y.8
Chen, R.9
-
35
-
-
13444293344
-
Database resources of the National Center for Biotechnology Information
-
Wheeler,D.L., Barrett,T., Benson,D.A., Bryant,S.H., Canese,K., Church,D.M., DiCuccio,M., Edgar,R., Federhen,S., Helmberg,W. et al. (2005) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 33, D39-D45.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Church, D.M.6
DiCuccio, M.7
Edgar, R.8
Federhen, S.9
Helmberg, W.10
-
36
-
-
17844385813
-
Structural implications of novel diversity in eucaryal RNase P RNA
-
Marquez,S.M., Harris,J.K., Kelley,S.T., Brown,J.W., Dawson,S.C., Roberts,E.C. and Pace,N.R. (2005) Structural implications of novel diversity in eucaryal RNase P RNA. RNA, 11, 739-751.
-
(2005)
RNA
, vol.11
, pp. 739-751
-
-
Marquez, S.M.1
Harris, J.K.2
Kelley, S.T.3
Brown, J.W.4
Dawson, S.C.5
Roberts, E.C.6
Pace, N.R.7
-
37
-
-
3042720475
-
Genome evolution in yeasts
-
Dujon,B., Sherman,D., Fischer,G., Durrens,P., Casaregola,S., Lafontaine,I., De Montigny,J., Marck,C., Neuveglise,C., Talla,E. et al. (2004) Genome evolution in yeasts. Nature, 430, 35-44.
-
(2004)
Nature
, vol.430
, pp. 35-44
-
-
Dujon, B.1
Sherman, D.2
Fischer, G.3
Durrens, P.4
Casaregola, S.5
Lafontaine, I.6
De Montigny, J.7
Marck, C.8
Neuveglise, C.9
Talla, E.10
-
38
-
-
0037246674
-
PlasmoDB: The Plasmodium genome resource. A database integrating experimental and computational data
-
Bahl,A., Brunk,B., Crabtree,J., Fraunholz,M.J., Gajria,B., Grant,G.R., Ginsburg,H., Gupta,D., Kissinger,J.C., Labo,P. et al. (2003) PlasmoDB: The Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res., 31, 212-215.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 212-215
-
-
Bahl, A.1
Brunk, B.2
Crabtree, J.3
Fraunholz, M.J.4
Gajria, B.5
Grant, G.R.6
Ginsburg, H.7
Gupta, D.8
Kissinger, J.C.9
Labo, P.10
-
39
-
-
0026670514
-
7-2/MRP RNAs in plant and mammalian cells: Association with higher order structures in the nucleolus
-
Kiss,T., Marshallsay,C. and Filipowicz,W. (1992) 7-2/MRP RNAs in plant and mammalian cells: Association with higher order structures in the nucleolus. EMBO J., 11, 3737-3746.
-
(1992)
EMBO J.
, vol.11
, pp. 3737-3746
-
-
Kiss, T.1
Marshallsay, C.2
Filipowicz, W.3
-
40
-
-
3142714285
-
Identification of a functional core in the RNA component of RNase MRP of budding yeasts
-
Li,X., Zaman,S., Langdon,Y., Zengel,J.M. and Lindahl,L. (2004) Identification of a functional core in the RNA component of RNase MRP of budding yeasts. Nucleic Acids Res., 32, 3703-3711.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3703-3711
-
-
Li, X.1
Zaman, S.2
Langdon, Y.3
Zengel, J.M.4
Lindahl, L.5
-
41
-
-
3342969661
-
A conserved element in the yeast RNase MRP RNA subunit can participate in a long-range base-pairing interaction
-
Walker,S.C. and Avis,J.M. (2004) A conserved element in the yeast RNase MRP RNA subunit can participate in a long-range base-pairing interaction. J. Mol. Biol., 341, 375-388.
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 375-388
-
-
Walker, S.C.1
Avis, J.M.2
-
42
-
-
0034118018
-
Functional equivalence of hairpins in the RNA subunits of RNase MRP and RNase P in Saccharomyces cerevisiae
-
Lindahl,L., Fretz,S., Epps,N. and Zengel,J.M. (2000) Functional equivalence of hairpins in the RNA subunits of RNase MRP and RNase P in Saccharomyces cerevisiae. RNA, 6, 653-658.
-
(2000)
RNA
, vol.6
, pp. 653-658
-
-
Lindahl, L.1
Fretz, S.2
Epps, N.3
Zengel, J.M.4
-
43
-
-
0035010212
-
An essential protein-binding domain of nuclear RNase P RNA
-
Ziehler,W.A., Morris,J., Scott,F.H., Millikin,C. and Engelke,D.R. (2001) An essential protein-binding domain of nuclear RNase P RNA. RNA, 7, 565-575.
-
(2001)
RNA
, vol.7
, pp. 565-575
-
-
Ziehler, W.A.1
Morris, J.2
Scott, F.H.3
Millikin, C.4
Engelke, D.R.5
-
44
-
-
0034538974
-
Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA
-
Frank,D.N., Adamidi,C., Ehringer,M.A., Pitulle,C. and Pace,N.R. (2000) Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA. RNA, 6, 1895-1904.
-
(2000)
RNA
, vol.6
, pp. 1895-1904
-
-
Frank, D.N.1
Adamidi, C.2
Ehringer, M.A.3
Pitulle, C.4
Pace, N.R.5
-
45
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna,R., Sugawara,H., Koike,T., Lopez,R., Gibson,T.J., Higgins,D.G. and Thompson,J.D. (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res., 31, 3497-3500.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
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