메뉴 건너뛰기




Volumn 35, Issue 5, 2007, Pages 1544-1554

Small ncRNA transcriptome analysis from kinetoplast mitochondria of Leishmania tarentolae

Author keywords

[No Author keywords available]

Indexed keywords

ANTISENSE OLIGONUCLEOTIDE; COMPLEMENTARY DNA; GUIDE RNA; MESSENGER RNA PRECURSOR; OLIGONUCLEOTIDE; PROTOZOAL RNA; SMALL NUCLEAR RNA; TRANSCRIPTOME; UNTRANSLATED RNA; URIDINE;

EID: 34247125527     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm004     Document Type: Article
Times cited : (21)

References (37)
  • 2
    • 33645124434 scopus 로고    scopus 로고
    • Genetic susceptibility to infectious disease: Lessons from mouse models of leishmaniasis
    • Lipoldova,M. and Demant,P. (2006) Genetic susceptibility to infectious disease: Lessons from mouse models of leishmaniasis. Nat. Rev. Genet. 7, 294-305.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 294-305
    • Lipoldova, M.1    Demant, P.2
  • 4
    • 27644487615 scopus 로고    scopus 로고
    • The clinical immunology of human chagas disease
    • Dutra,W.O., Rocha,M.O. and Teixeira,M.M. (2005) The clinical immunology of human chagas disease. Trends Parasitol., 21, 581-587.
    • (2005) Trends Parasitol , vol.21 , pp. 581-587
    • Dutra, W.O.1    Rocha, M.O.2    Teixeira, M.M.3
  • 5
    • 0023464113 scopus 로고
    • The mitochondrial genome of kinetoplastid protozoa: Genomic organization, transcription, replication, and evolution
    • Simpson,L. (1987) The mitochondrial genome of kinetoplastid protozoa: genomic organization, transcription, replication, and evolution. Annu. Rev. Microbiol., 41, 363-382.
    • (1987) Annu. Rev. Microbiol , vol.41 , pp. 363-382
    • Simpson, L.1
  • 6
    • 0024402324 scopus 로고
    • Kinetoplastid mitochondria contain functional tRNAs which are encoded in nuclear DNA and also contain small minicircle and maxicircle transcripts of unknown function
    • Simpson,A.M., Suyama,Y., Dewes,H., Campbell,D.A. and Simpson,L. (1989) Kinetoplastid mitochondria contain functional tRNAs which are encoded in nuclear DNA and also contain small minicircle and maxicircle transcripts of unknown function. Nucleic Acids Res., 17, 5427-5445.
    • (1989) Nucleic Acids Res , vol.17 , pp. 5427-5445
    • Simpson, A.M.1    Suyama, Y.2    Dewes, H.3    Campbell, D.A.4    Simpson, L.5
  • 7
    • 0037371743 scopus 로고    scopus 로고
    • Uridine insertion/ deletion RNA editing in trypanosome mitochondria: A complex business
    • Simpson,L., Sbicego,S. and Aphasizhev,R. (2003) Uridine insertion/ deletion RNA editing in trypanosome mitochondria: A complex business. RNA, 9, 265-276.
    • (2003) RNA , vol.9 , pp. 265-276
    • Simpson, L.1    Sbicego, S.2    Aphasizhev, R.3
  • 9
    • 0030928201 scopus 로고    scopus 로고
    • Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria
    • Rusche,L.N., Cruz-Reyes,J., Piller,K.J. and Sollner-Webb,B. (1997) Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria. EMBO J., 16, 4069-4081.
    • (1997) EMBO J , vol.16 , pp. 4069-4081
    • Rusche, L.N.1    Cruz-Reyes, J.2    Piller, K.J.3    Sollner-Webb, B.4
  • 10
    • 0025189769 scopus 로고
    • A model for RNA editing in kinetoplastid mitochondria: 'guide' RNA molecules transcribed from maxicircle DNA provide the edited information
    • Blum,B., Bakalara,N. and Simpson,L. (1990) A model for RNA editing in kinetoplastid mitochondria: 'guide' RNA molecules transcribed from maxicircle DNA provide the edited information. Cell, 60, 189-198.
    • (1990) Cell , vol.60 , pp. 189-198
    • Blum, B.1    Bakalara, N.2    Simpson, L.3
  • 11
    • 0025369691 scopus 로고
    • Kinetoplast DNA minicircles encode guide RNAs for editing of cytochrome oxidase subunit III mRNA
    • Sturm,N.R. and Simpson,L. (1990) Kinetoplast DNA minicircles encode guide RNAs for editing of cytochrome oxidase subunit III mRNA. Cell 61, 879-884.
    • (1990) Cell , vol.61 , pp. 879-884
    • Sturm, N.R.1    Simpson, L.2
  • 12
    • 0025293741 scopus 로고
    • Guide RNAs in kinetoplastid mitochondria have a nonencoded 3′ oligo(U) tail involved in recognition of the preedited region
    • Blum,B. and Simpson,L. (1990) Guide RNAs in kinetoplastid mitochondria have a nonencoded 3′ oligo(U) tail involved in recognition of the preedited region. Cell, 62, 391-397.
    • (1990) Cell , vol.62 , pp. 391-397
    • Blum, B.1    Simpson, L.2
  • 13
    • 0026710969 scopus 로고
    • The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing
    • Maslov,D.A. and Simpson,L. (1992) The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing. Cell, 70, 459-467.
    • (1992) Cell , vol.70 , pp. 459-467
    • Maslov, D.A.1    Simpson, L.2
  • 14
    • 0022432245 scopus 로고
    • Apocytochrome b and other mitochondrial DNA sequences are differentially expressed during the life cycle of Trypanosoma brucei
    • Feagin,J.E., Jasmer,D.P. and Stuart,K. (1985) Apocytochrome b and other mitochondrial DNA sequences are differentially expressed during the life cycle of Trypanosoma brucei. Nucleic Acids Res., 13 4577-4596.
    • (1985) Nucleic Acids Res , vol.13 , pp. 4577-4596
    • Feagin, J.E.1    Jasmer, D.P.2    Stuart, K.3
  • 15
    • 0026543293 scopus 로고
    • Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Trypanosoma brucei
    • Read,L.K., Myler,P.J. and Stuart,K. (1992) Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Trypanosoma brucei. J. Biol. Chem., 267, 1123-1128.
    • (1992) J. Biol. Chem , vol.267 , pp. 1123-1128
    • Read, L.K.1    Myler, P.J.2    Stuart, K.3
  • 16
    • 0031438786 scopus 로고    scopus 로고
    • Mitochondrial mRNA 3′ cleavage/polyadenylation and RNA editing in Trypanosoma brucei are independent events
    • Koslowsky,D.J. and Yahampath,G. (1997) Mitochondrial mRNA 3′ cleavage/polyadenylation and RNA editing in Trypanosoma brucei are independent events. Mol. Biochem. Parasitol., 90, 81-94.
    • (1997) Mol. Biochem. Parasitol , vol.90 , pp. 81-94
    • Koslowsky, D.J.1    Yahampath, G.2
  • 17
    • 0034853642 scopus 로고    scopus 로고
    • Guide RNAs of the recently isolated LEM125 strain of Leishmania tarentolae: An unexpected complexity
    • Gao,G., Kapushoc,S.T., Simpson,A.M., Thiemann,O.H. and Simpson,L. (2001) Guide RNAs of the recently isolated LEM125 strain of Leishmania tarentolae: An unexpected complexity. RNA, 7, 1335-1347.
    • (2001) RNA , vol.7 , pp. 1335-1347
    • Gao, G.1    Kapushoc, S.T.2    Simpson, A.M.3    Thiemann, O.H.4    Simpson, L.5
  • 19
    • 4143111323 scopus 로고    scopus 로고
    • An intragenic guide RNA location suggests a complex mechanism for mitochondrial gene expression in Trypanosoma brucei
    • Clement,S.L., Mingler,M.K. and Koslowsky,D.J. (2004) An intragenic guide RNA location suggests a complex mechanism for mitochondrial gene expression in Trypanosoma brucei. Eukaryot. Cell, 3, 862-869.
    • (2004) Eukaryot. Cell , vol.3 , pp. 862-869
    • Clement, S.L.1    Mingler, M.K.2    Koslowsky, D.J.3
  • 20
    • 0030960395 scopus 로고    scopus 로고
    • The genomic organization of guide RNA genes in kinetoplastid protozoa: Several conundrums and their solutions
    • Simpson,L. (1997) The genomic organization of guide RNA genes in kinetoplastid protozoa: Several conundrums and their solutions. Mol. Biochem. Parasitol., 86, 133-141.
    • (1997) Mol. Biochem. Parasitol , vol.86 , pp. 133-141
    • Simpson, L.1
  • 21
    • 0025946815 scopus 로고
    • Leishmania tarentolae minicircles of different sequence classes encode single guide RNAs located in the variable region approximately 150 bp from the conserved region
    • Sturm,N.R. and Simpson,L. (1991) Leishmania tarentolae minicircles of different sequence classes encode single guide RNAs located in the variable region approximately 150 bp from the conserved region. Nucleic Acids Res., 19, 6277-6281.
    • (1991) Nucleic Acids Res , vol.19 , pp. 6277-6281
    • Sturm, N.R.1    Simpson, L.2
  • 22
    • 0034675929 scopus 로고    scopus 로고
    • Processing of polycistronic guide RNAs is associated with RNA editing complexes in Trypanosoma brucei
    • Grams,J., McManus,M.T. and Hajduk,S.L. (2000) Processing of polycistronic guide RNAs is associated with RNA editing complexes in Trypanosoma brucei. EMBO J., 19, 5525-5532.
    • (2000) EMBO J , vol.19 , pp. 5525-5532
    • Grams, J.1    McManus, M.T.2    Hajduk, S.L.3
  • 24
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski,P. and Sacchi,N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem., 162, 156-159.
    • (1987) Anal. Biochem , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 25
    • 32644439243 scopus 로고    scopus 로고
    • Experimental approaches to identify non-coding RNAs
    • Huttenhofer,A. and Vogel,J. (2006) Experimental approaches to identify non-coding RNAs. Nucleic Acids Res., 34, 635-646.
    • (2006) Nucleic Acids Res , vol.34 , pp. 635-646
    • Huttenhofer, A.1    Vogel, J.2
  • 26
    • 0029157052 scopus 로고
    • The secondary structure of guide RNA molecules from Trypanosoma brucei
    • Schmid,B., Riley,G.R., Stuart,K. and Goringer,H.U. (1995) The secondary structure of guide RNA molecules from Trypanosoma brucei. Nucleic Acids Res., 23, 3093-3102.
    • (1995) Nucleic Acids Res , vol.23 , pp. 3093-3102
    • Schmid, B.1    Riley, G.R.2    Stuart, K.3    Goringer, H.U.4
  • 27
    • 0030739912 scopus 로고    scopus 로고
    • A three-dimensional working model for a guide RNA from Trypanosoma brucei
    • Hermann,T., Schmid,B., Heumann,H. and Goringer,H.U. (1997) A three-dimensional working model for a guide RNA from Trypanosoma brucei. Nucleic Acids Res., 25, 2311-2318.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2311-2318
    • Hermann, T.1    Schmid, B.2    Heumann, H.3    Goringer, H.U.4
  • 28
    • 33747478692 scopus 로고    scopus 로고
    • Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism
    • Schumacher,M.A., Karamooz,E., Zikova,A., Trantirek,L. and Lukes,J. (2006) Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism. Cell, 126, 701-711.
    • (2006) Cell , vol.126 , pp. 701-711
    • Schumacher, M.A.1    Karamooz, E.2    Zikova, A.3    Trantirek, L.4    Lukes, J.5
  • 30
    • 0027997868 scopus 로고
    • Disruption of RNA editing in Leishmania tarentolae by the loss of minicircle-encoded guide RNA genes
    • Thiemann,O.H., Maslov,D.A. and Simpson,L. (1994) Disruption of RNA editing in Leishmania tarentolae by the loss of minicircle-encoded guide RNA genes. EMBO J., 13, 5689-5700.
    • (1994) EMBO J , vol.13 , pp. 5689-5700
    • Thiemann, O.H.1    Maslov, D.A.2    Simpson, L.3
  • 31
    • 0026666862 scopus 로고
    • Generation of unexpected editing patterns in Leishmania tarentolae mitochondrial mRNAs: Misediting produced by misguiding
    • Sturm,N.R., Maslov,D.A., Blum,B. and Simpson,L. (1992) Generation of unexpected editing patterns in Leishmania tarentolae mitochondrial mRNAs: Misediting produced by misguiding. Cell, 70, 469-476.
    • (1992) Cell , vol.70 , pp. 469-476
    • Sturm, N.R.1    Maslov, D.A.2    Blum, B.3    Simpson, L.4
  • 32
    • 33750517762 scopus 로고    scopus 로고
    • Alternative editing of cytochrome c oxidase III mRNA in trypanosome mitochondria generates protein diversity
    • Ochsenreiter,T. and Hajduk,S.L. (2006) Alternative editing of cytochrome c oxidase III mRNA in trypanosome mitochondria generates protein diversity. EMBO Rep., 7, 1128-1133.
    • (2006) EMBO Rep , vol.7 , pp. 1128-1133
    • Ochsenreiter, T.1    Hajduk, S.L.2
  • 33
    • 0026515522 scopus 로고
    • An intergenic G-rich region in Leishmania tarentolae kinetoplast maxicircle DNA is a pan-edited cryptogene encoding ribosomal protein S12
    • Maslov,D.A., Sturm,N.R., Niner,B.M., Gruszynski,E.S., Peris,M. and Simpson,L. (1992) An intergenic G-rich region in Leishmania tarentolae kinetoplast maxicircle DNA is a pan-edited cryptogene encoding ribosomal protein S12. Mol. Cell. Biol., 12, 56-67.
    • (1992) Mol. Cell. Biol , vol.12 , pp. 56-67
    • Maslov, D.A.1    Sturm, N.R.2    Niner, B.M.3    Gruszynski, E.S.4    Peris, M.5    Simpson, L.6
  • 34
    • 2642581697 scopus 로고    scopus 로고
    • RNAediting terminal uridylyl transferase 1: Identification of functional domains by mutational analysis
    • Aphasizheva,I., Aphasizhev,R. and Simpson,L. (2004) RNAediting terminal uridylyl transferase 1: Identification of functional domains by mutational analysis. J. Biol. Chem., 279, 24123-24130.
    • (2004) J. Biol. Chem , vol.279 , pp. 24123-24130
    • Aphasizheva, I.1    Aphasizhev, R.2    Simpson, L.3
  • 35
    • 27144545842 scopus 로고    scopus 로고
    • RNA uridylyltransferases
    • Aphasizhev,R. (2005) RNA uridylyltransferases. Cell. Mol. Life. Sci., 62, 2194-2203.
    • (2005) Cell. Mol. Life. Sci , vol.62 , pp. 2194-2203
    • Aphasizhev, R.1
  • 36
    • 0025294781 scopus 로고
    • RNA editing involves indiscriminate U changes throughout precisely defined editing domains
    • Decker,C.J. and Sollner-Webb,B. (1990) RNA editing involves indiscriminate U changes throughout precisely defined editing domains. Cell, 61, 1001-1011.
    • (1990) Cell , vol.61 , pp. 1001-1011
    • Decker, C.J.1    Sollner-Webb, B.2
  • 37
    • 0037040412 scopus 로고    scopus 로고
    • Trypanosome mitochondrial 3′ terminal uridylyl transferase (TUTase): The key enzyme in U-insertion/deletion RNA editing
    • Aphasizhev,R., Sbicego,S., Peris,M., Jang,S.H., Aphasizheva,I., Simpson,A.M., Rivlin,A. and Simpson,L. (2002) Trypanosome mitochondrial 3′ terminal uridylyl transferase (TUTase): The key enzyme in U-insertion/deletion RNA editing. Cell, 108, 637-648.
    • (2002) Cell , vol.108 , pp. 637-648
    • Aphasizhev, R.1    Sbicego, S.2    Peris, M.3    Jang, S.H.4    Aphasizheva, I.5    Simpson, A.M.6    Rivlin, A.7    Simpson, L.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.