메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

Systematic identification of non-coding RNA 2,2,7-trimethylguanosine cap structures in Caenorhabditis elegans

Author keywords

[No Author keywords available]

Indexed keywords

2,2,7 TRIMETHYLGUANOSINE; 2,2,7 TRIMETHYLGUANOSINE ANTIBODY; CAPPED RNA; DNA DIRECTED RNA POLYMERASE III; GUANOSINE DERIVATIVE; PROTEIN ANTIBODY; RNA POLYMERASE II; SMALL NUCLEAR RNA; SMALL NUCLEOLAR RNA; SPLICED LEADER RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA; ANTIBODY;

EID: 38149069007     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-8-86     Document Type: Article
Times cited : (11)

References (39)
  • 1
    • 0033974443 scopus 로고    scopus 로고
    • Nuclear snRNA and nuclear function(discovery of 5'cap structures in RNA)
    • Ro-Choi TS Nuclear snRNA and nuclear function(discovery of 5'cap structures in RNA) Crit Rev Eukaryotic Gene Exp 1999, 9(2):107-158.
    • (1999) Crit Rev Eukaryotic Gene Exp , vol.9 , Issue.2 , pp. 107-158
    • Ro-Choi, T.S.1
  • 2
    • 0035576933 scopus 로고    scopus 로고
    • Evolutionary origin of SL-addition trans-splicing: Still an enigma
    • 10.1016/S0168-9525(01)02499-4 11718904
    • Nilsen TW Evolutionary origin of SL-addition trans-splicing: Still an enigma Trends Genet 2001, 17(12):678-680. 10.1016/S0168-9525(01)02499-4 11718904
    • (2001) Trends Genet , vol.17 , Issue.12 , pp. 678-680
    • Nilsen, T.W.1
  • 3
    • 0023047717 scopus 로고
    • Cap trimethylation of U snRNA is cytoplasmic and dependent on U snRNP protein binding
    • 10.1016/0092-8674(86)90072-3 2944599
    • Mattaj IW Cap trimethylation of U snRNA is cytoplasmic and dependent on U snRNP protein binding Cell 1986, 46(6):905-911. 10.1016/ 0092-8674(86)90072-3 2944599
    • (1986) Cell , vol.46 , Issue.6 , pp. 905-911
    • Mattaj, I.W.1
  • 4
    • 0028176685 scopus 로고
    • m3G cap hypermethylation of U1 small nuclear ribonucleoprotein (snRNP) in vitro: Evidence that the U1 small nuclear RNA-(guanosine-N2)-methyltransferase is a non-snRNP cytoplasmic protein that requires a binding site on the Sm core domain
    • 358782 8196654
    • Plessel G Fischer U Luhrmann R m3G cap hypermethylation of U1 small nuclear ribonucleoprotein (snRNP) in vitro: Evidence that the U1 small nuclear RNA-(guanosine-N2)-methyltransferase is a non-snRNP cytoplasmic protein that requires a binding site on the Sm core domain Mol Cell Biol 1994, 14(6):4160-4172. 358782 8196654
    • (1994) Mol Cell Biol , vol.14 , pp. 4160-4172
    • Plessel, G.1    Fischer, U.2    Luhrmann, R.3
  • 5
    • 0033500155 scopus 로고    scopus 로고
    • Nuclear retention elements of U3 small nucleolar RNA
    • 84939 10567566
    • Speckmann W Narayanan A Terns R Terns MP Nuclear retention elements of U3 small nucleolar RNA Mol Cell Biol 1999, 19(12):8412-8421. 84939 10567566
    • (1999) Mol Cell Biol , vol.19 , Issue.12 , pp. 8412-8421
    • Speckmann, W.1    Narayanan, A.2    Terns, R.3    Terns, M.P.4
  • 6
    • 0029098641 scopus 로고
    • A common maturation pathway for small nucleolar RNAs
    • 394584 7588615
    • Terns MP Grimm C Lund E Dahlberg JE A common maturation pathway for small nucleolar RNAs EMBO Journal 1995, 14(19):4860-4871. 394584 7588615
    • (1995) EMBO Journal , vol.14 , pp. 4860-4871
    • Terns, M.P.1    Grimm, C.2    Lund, E.3    Dahlberg, J.E.4
  • 7
    • 0028179047 scopus 로고
    • Retention and 5' cap trimethylation of U3 snRNA in the nucleus
    • 10.1126/science.8178154 8178154
    • Terns MP Dahlberg JE Retention and 5' cap trimethylation of U3 snRNA in the nucleus Science 1994, 264(5161):959-961. 10.1126/science.8178154 8178154
    • (1994) Science , vol.264 , Issue.5161 , pp. 959-961
    • Terns, M.P.1    Dahlberg, J.E.2
  • 8
    • 0022996623 scopus 로고
    • Small nuclear RNAs from Saccharomyces cerevisiae: Unexpected diversity in abundance, size, and molecular complexity
    • 386874 3534883 10.1073/pnas.83.21.8097
    • Riedel N Wise JA Swerdlow H Mak A Guthrie C Small nuclear RNAs from Saccharomyces cerevisiae: Unexpected diversity in abundance, size, and molecular complexity Proc Natl Acad Sci U S A 1986, 83(21):8097-8101. 386874 3534883 10.1073/pnas.83.21.8097
    • (1986) Proc Natl Acad Sci U S A , vol.83 , Issue.21 , pp. 8097-8101
    • Riedel, N.1    Wise, J.A.2    Swerdlow, H.3    Mak, A.4    Guthrie, C.5
  • 9
    • 0027475858 scopus 로고
    • Convergent transcripts of the yeast PRP38-SMD1 locus encode two essential splicing factors, including the D1 core polypeptide of small nuclear ribonucleoprotein particles
    • 45767 8430095 10.1073/pnas.90.3.848
    • Rymond BC Convergent transcripts of the yeast PRP38-SMD1 locus encode two essential splicing factors, including the D1 core polypeptide of small nuclear ribonucleoprotein particles Proc Natl Acad Sci U S A 1993, 90(3):848-852. 45767 8430095 10.1073/pnas.90.3.848
    • (1993) Proc Natl Acad Sci U S A , vol.90 , Issue.3 , pp. 848-852
    • Rymond, B.C.1
  • 10
    • 0028950017 scopus 로고
    • Structurally related but functionally distinct yeast Sm D core small nuclear ribonucleoprotein particle proteins
    • 231989 7799953
    • Roy J Zheng B Rymond BC Woolford JJL Structurally related but functionally distinct yeast Sm D core small nuclear ribonucleoprotein particle proteins Mol Cell Biol 1995, 15(1):445. 231989 7799953
    • (1995) Mol Cell Biol , vol.15 , Issue.1 , pp. 445
    • Roy, J.1    Zheng, B.2    Rymond, B.C.3    Woolford, J.J.L.4
  • 11
    • 0036238278 scopus 로고    scopus 로고
    • Hypermethylation of the Cap Structure of Both Yeast snRNAs and snoRNAs Requires a Conserved Methyltransferase that Is Localized to the Nucleolus
    • 10.1016/S1097-2765(02)00484-7 11983179
    • Mouaikel J Verheggen C Bertrand E Tazi J Bordonn R Hypermethylation of the Cap Structure of Both Yeast snRNAs and snoRNAs Requires a Conserved Methyltransferase that Is Localized to the Nucleolus Mol Cell 2002, 9(4):891-901. 10.1016/S1097-2765(02)00484-7 11983179
    • (2002) Mol Cell , vol.9 , pp. 891-901
    • Mouaikel, J.1    Verheggen, C.2    Bertrand, E.3    Tazi, J.4    Bordonn, R.5
  • 12
    • 0032527283 scopus 로고    scopus 로고
    • Snurportin1, an m3G-cap-specific nuclear import receptor with a novel domain structure
    • 1170744 9670026 10.1093/emboj/17.14.4114
    • Huber J Cronshagen U Kadokura M Marshallsay C Wada T Sekine M Luhrmann R Snurportin1, an m3G-cap-specific nuclear import receptor with a novel domain structure EMBO Journal 1998, 17:4114-4126. 1170744 9670026 10.1093/emboj/17.14.4114
    • (1998) EMBO Journal , vol.17 , pp. 4114-4126
    • Huber, J.1    Cronshagen, U.2    Kadokura, M.3    Marshallsay, C.4    Wada, T.5    Sekine, M.6    Luhrmann, R.7
  • 13
    • 0025007910 scopus 로고
    • The trimethylguanosine cap structure of U1 snRNA is a component of a bipartite nuclear targeting signal
    • 10.1016/0092-8674(90)90021-6 2143105
    • Hamma J Darzynkiewiczb E Taharac SM Mattaj W The trimethylguanosine cap structure of U1 snRNA is a component of a bipartite nuclear targeting signal Cell 1990, 62(3):569-557. 10.1016/0092-8674(90)90021-6 2143105
    • (1990) Cell , vol.62 , Issue.3 , pp. 557-569
    • Hamma, J.1    Darzynkiewiczb, E.2    Taharac, S.M.3    Mattaj, W.4
  • 14
    • 0024999077 scopus 로고
    • An essential signaling role for the m3G cap in the transport of U1 snRNP to the nucleus
    • 10.1126/science.2143847 2143847
    • Fischer U Luhrmann R An essential signaling role for the m3G cap in the transport of U1 snRNP to the nucleus Science 1990, 249(4970):786-790. 10.1126/science.2143847 2143847
    • (1990) Science , vol.249 , Issue.4970 , pp. 786-790
    • Fischer, U.1    Luhrmann, R.2
  • 15
    • 0014692923 scopus 로고
    • Occurrence of N2,N2,7-Trimethylguanosine in Minor RNA Species of a Mammalian Cell Line
    • 10.1038/2231365a0 5817758
    • Saponara AG Enger MD Occurrence of N2,N2,7-Trimethylguanosine in Minor RNA Species of a Mammalian Cell Line Nature 1969, 223(5213):1365-1366. 10.1038/2231365a0 5817758
    • (1969) Nature , vol.223 , Issue.5213 , pp. 1365-1366
    • Saponara, A.G.1    Enger, M.D.2
  • 16
    • 0023082918 scopus 로고
    • A library of trimethylguanosine-capped small RNAS in Physarum polycephalum
    • 10.1016/0378-1119(87)90351-9 2956157
    • Adams DS Noonan D Burn TC Skinner HB A library of trimethylguanosine-capped small RNAS in Physarum polycephalum Gene 1987, 54(1):93-103. 10.1016/0378-1119(87)90351-9 2956157
    • (1987) Gene , vol.54 , Issue.1 , pp. 93-103
    • Adams, D.S.1    Noonan, D.2    Burn, T.C.3    Skinner, H.B.4
  • 17
    • 0020491363 scopus 로고
    • Isolation and characterization of rabbit anti-m3 2,2,7G antibodies
    • 326991 7155893 10.1093/nar/10.22.7103
    • Luhrmann R Appel B Bringmann P Rinke J Reuter R Rothe S Bald R Isolation and characterization of rabbit anti-m3 2,2,7G antibodies Nucl Acids Res 1982, 10(22):7103-7113. 326991 7155893 10.1093/nar/10.22.7103
    • (1982) Nucl Acids Res , vol.10 , Issue.22 , pp. 7103-7113
    • Luhrmann, R.1    Appel, B.2    Bringmann, P.3    Rinke, J.4    Reuter, R.5    Rothe, S.6    Bald, R.7
  • 18
    • 0023656329 scopus 로고
    • A monoclonal antibody against 2,2,7-trimethylguanosine that reacts with intact, class U, small nuclear ribonucleoproteins as well as with 7-methylguanosine-capped RNAs
    • 10.1111/j.1432-1033.1987.tb13439.x 2959477
    • Bochnig P Reuter R Bringmann P Luhrmann R A monoclonal antibody against 2,2,7-trimethylguanosine that reacts with intact, class U, small nuclear ribonucleoproteins as well as with 7-methylguanosine-capped RNAs Eur J Biochem 1987, 168(2):461-467. 10.1111/j.1432-1033.1987.tb13439.x 2959477
    • (1987) Eur J Biochem , vol.168 , Issue.2 , pp. 461-467
    • Bochnig, P.1    Reuter, R.2    Bringmann, P.3    Luhrmann, R.4
  • 20
    • 0036899930 scopus 로고    scopus 로고
    • RNomics: Identification and function of small, non-messenger RNAs
    • 10.1016/S1367-5931(02)00397-6 12470739
    • Huttenhofer A Brosius J Bachellerie JP RNomics: Identification and function of small, non-messenger RNAs Curr Opin Chem Biol 2002, 6(6):835-843. 10.1016/S1367-5931(02)00397-6 12470739
    • (2002) Curr Opin Chem Biol , vol.6 , Issue.6 , pp. 835-843
    • Huttenhofer, A.1    Brosius, J.2    Bachellerie, J.P.3
  • 21
    • 14044272835 scopus 로고    scopus 로고
    • From The Cover: Fast and reliable prediction of noncoding RNAs
    • 548974 15665081 10.1073/pnas.0409169102
    • Washietl S Hofacker IL Stadler PF From The Cover: Fast and reliable prediction of noncoding RNAs PNAS 2005, 102(7):2454-2459. 548974 15665081 10.1073/pnas.0409169102
    • (2005) PNAS , vol.102 , Issue.7 , pp. 2454-2459
    • Washietl, S.1    Hofacker, I.L.2    Stadler, P.F.3
  • 22
    • 0032796501 scopus 로고    scopus 로고
    • RNA secondary structure prediction using stochastic context-free grammars and evolutionary history
    • 10.1093/bioinformatics/15.6.446 10383470
    • Knudsen B Hein J RNA secondary structure prediction using stochastic context-free grammars and evolutionary history Bioinformatics 1999, 15(6):446-454. 10.1093/bioinformatics/15.6.446 10383470
    • (1999) Bioinformatics , vol.15 , Issue.6 , pp. 446-454
    • Knudsen, B.1    Hein, J.2
  • 25
    • 0142147328 scopus 로고    scopus 로고
    • The roles of endonucleolytic cleavage and exonucleolytic digestion in the 5'-end processing of S. cerevisiae box C/D snoRNAs
    • 1287058 14561886 10.1261/rna.5126203
    • Lee CY Lee A Chanfereau G The roles of endonucleolytic cleavage and exonucleolytic digestion in the 5'-end processing of S. cerevisiae box C/ D snoRNAs RNA 2003, 9(11):1362-1370. 1287058 14561886 10.1261/rna.5126203
    • (2003) RNA , vol.9 , pp. 1362-1370
    • Lee, C.Y.1    Lee, A.2    Chanfereau, G.3
  • 26
    • 9244225692 scopus 로고    scopus 로고
    • Guide RNAs with 5′ Caps and Novel Box C/D snoRNA-like Domains for Modification of snRNAs in Metazoa
    • 10.1016/j.cub.2004.11.003 15556860
    • Tycowski KT Aab A Steitz JA Guide RNAs with 5′ Caps and Novel Box C/D snoRNA-like Domains for Modification of snRNAs in Metazoa Curr Biol 2004, 14(22):1985-1995. 10.1016/j.cub.2004.11.003 15556860
    • (2004) Curr Biol , vol.14 , Issue.22 , pp. 1985-1995
    • Tycowski, K.T.1    Aab, A.2    Steitz, J.A.3
  • 27
    • 0029853505 scopus 로고    scopus 로고
    • Direct analysis of nematode cis- and trans-spliceosomes: A functional role for U5 snRNA in spliced leader addition trans-splicing and the identification of novel Sm snRNPs
    • 1369411 8752084
    • Maroney PA Yu YT Jankowska M Nilsen TW Direct analysis of nematode cis- and trans-spliceosomes: A functional role for U5 snRNA in spliced leader addition trans-splicing and the identification of novel Sm snRNPs RNA 1996, 2(8):735-745. 1369411 8752084
    • (1996) RNA , vol.2 , Issue.8 , pp. 735-745
    • Maroney, P.A.1    Yu, Y.T.2    Jankowska, M.3    Nilsen, T.W.4
  • 28
    • 33947732940 scopus 로고    scopus 로고
    • A novel family of C. elegans snRNPs contains proteins associated with trans-splicing
    • rna.426707
    • Macmorris M Kumar M Lasda E Larsen A Kraemer B Blumenthal T A novel family of C. elegans snRNPs contains proteins associated with trans-splicing RNA 2007:rNa.426707.
    • (2007) RNA
    • Macmorris, M.1    Kumar, M.2    Lasda, E.3    Larsen, A.4    Kraemer, B.5    Blumenthal, T.6
  • 29
    • 0020308857 scopus 로고
    • Structural organization of ribonucleoproteins containing small nuclear RNAs from HeLa cells: Proteins interact closely with a similar structural domain of U1, U2, U4 and U5 small nuclear RNAs
    • 10.1016/0022-2836(82)90392-8 6187926
    • Liautard JP Sri-Widada J Brunel C Jeanteur P Structural organization of ribonucleoproteins containing small nuclear RNAs from HeLa cells: Proteins interact closely with a similar structural domain of U1, U2, U4 and U5 small nuclear RNAs J Mol Biol 1982, 162(3):623-643. 10.1016/ 0022-2836(82)90392-8 6187926
    • (1982) J Mol Biol , vol.162 , pp. 623-643
    • Liautard, J.P.1    Sri-Widada, J.2    Brunel, C.3    Jeanteur, P.4
  • 31
    • 0344668826 scopus 로고    scopus 로고
    • A complex pathway for 3′ processing of the yeast U3 snoRNA
    • 290272 14627812 10.1093/nar/gkg904
    • Kufel J Allmang C Verdone L Beggs J Tollervey D A complex pathway for 3′ processing of the yeast U3 snoRNA Nucl Acids Res 2003, 31:6788-6797. 290272 14627812 10.1093/nar/gkg904
    • (2003) Nucl Acids Res , vol.31 , pp. 6788-6797
    • Kufel, J.1    Allmang, C.2    Verdone, L.3    Beggs, J.4    Tollervey, D.5
  • 32
    • 0025254635 scopus 로고
    • A spliced leader is present on a subset of mRNAs from the human parasite Schistosoma mansoni
    • 55063 2247461 10.1073/pnas.87.22.8879
    • Rajkovic A Davis RE Simonsen JN Rottman FM A spliced leader is present on a subset of mRNAs from the human parasite Schistosoma mansoni Proc Natl Acad Sci U S A 1990, 87(22):8879-8883. 55063 2247461 10.1073/ pnas.87.22.8879
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 8879-8883
    • Rajkovic, A.1    Davis, R.E.2    Simonsen, J.N.3    Rottman, F.M.4
  • 33
    • 14244264414 scopus 로고    scopus 로고
    • Specificity and Mechanism of RNA Cap Guanine-N2 Methyltransferase (Tgs1)
    • 10.1074/jbc.C400554200 15590684
    • Hausmann S Shuman S Specificity and Mechanism of RNA Cap Guanine-N2 Methyltransferase (Tgs1) J Biol Chem 2005, 280(6):4021-4024. 10.1074/ jbc.C400554200 15590684
    • (2005) J Biol Chem , vol.280 , Issue.6 , pp. 4021-4024
    • Hausmann, S.1    Shuman, S.2
  • 34
    • 0025952218 scopus 로고
    • The cloned RNA polymerase II transcription factor IID selects RNA polymerase III to transcribe the human U6 gene in vitro
    • 10.1101/gad.5.8.1477 1869050
    • Lobo SM Lister J Sullivan ML Hernandez N The cloned RNA polymerase II transcription factor IID selects RNA polymerase III to transcribe the human U6 gene in vitro Genes Dev 1991, 5(8):1477-1489. 10.1101/ gad.5.8.1477 1869050
    • (1991) Genes Dev , vol.5 , Issue.8 , pp. 1477-1489
    • Lobo, S.M.1    Lister, J.2    Sullivan, M.L.3    Hernandez, N.4
  • 35
    • 0022969957 scopus 로고
    • U6 Small Nuclear RNA is Transcribed by RNA Polymerase III
    • 386973 3464970 10.1073/pnas.83.22.8575
    • Kunkel GR Maser RL Calvet JP Pederson T U6 Small Nuclear RNA is Transcribed by RNA Polymerase III PNAS 1986, 83(22):8575-8579. 386973 3464970 10.1073/pnas.83.22.8575
    • (1986) PNAS , vol.83 , Issue.22 , pp. 8575-8579
    • Kunkel, G.R.1    Maser, R.L.2    Calvet, J.P.3    Pederson, T.4
  • 36
    • 0037013831 scopus 로고    scopus 로고
    • Cajal body-specific small nuclear RNAs: A novel class of 2′-O-methylation and pseudouridylation guide RNAs
    • 126017 12032087 10.1093/emboj/21.11.2746
    • Darzacq X Jady BE Verheggen C Kiss AM Bertrand E Kiss T Cajal body-specific small nuclear RNAs: A novel class of 2′-O-methylation and pseudouridylation guide RNAs EMBO Journal 2002 21 2746 2756 126017 12032087 10.1093/emboj/21.11.2746
    • (2002) EMBO Journal , vol.21 , pp. 2746-2756
    • Darzacq, X.1    Jady, B.E.2    Verheggen, C.3    Kiss, A.M.4    Bertrand, E.5    Kiss, T.6
  • 37
    • 33745153118 scopus 로고    scopus 로고
    • Identification of the Major Spliceosomal RNAs in Dictyostelium discoideum Reveals Developmentally Regulated U2 Variants and Polyadenylated snRNAs
    • 1489274 16757740 10.1128/EC.00065-06
    • Hinas A Larsson P Avesson L Kirsebom LA Virtanen A Soderbom F Identification of the Major Spliceosomal RNAs in Dictyostelium discoideum Reveals Developmentally Regulated U2 Variants and Polyadenylated snRNAs Eukaryotic Cell 2006, 5(6):924-934. 1489274 16757740 10.1128/EC.00065-06
    • (2006) Eukaryotic Cell , vol.5 , Issue.6 , pp. 924-934
    • Hinas, A.1    Larsson, P.2    Avesson, L.3    Kirsebom, L.A.4    Virtanen, A.5    Soderbom, F.6
  • 38
    • 0034669349 scopus 로고    scopus 로고
    • The Box C/D motif directs snoRNA 5′-cap hypermethylation
    • 113864 11071934 10.1093/nar/28.22.4467
    • Speckmann WA Terns RM Terns MP The Box C/D motif directs snoRNA 5'-cap hypermethylation Nucl Acids Res 2000, 28(22):4467-4473. 113864 11071934 10.1093/nar/28.22.4467
    • (2000) Nucl Acids Res , vol.28 , Issue.22 , pp. 4467-4473
    • Speckmann, W.A.1    Terns, R.M.2    Terns, M.P.3
  • 39
    • 0026632789 scopus 로고
    • 3′-end-dependent formation of U6 small nuclear ribonucleoprotein particles in Xenopus laevis oocyte nuclei
    • 364517 1535684
    • Terns MP Lund E Dahlberg JE 3′-end-dependent formation of U6 small nuclear ribonucleoprotein particles in Xenopus laevis oocyte nuclei Mol Cell Biol 1992, 12(7):3032-3040. 364517 1535684
    • (1992) Mol Cell Biol , vol.12 , pp. 3032-3040
    • Terns, M.P.1    Lund, E.2    Dahlberg, J.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.