A structural and functional study of plastid RNAs homologous to catalytic bacterial RNase P RNA

Gene

Volumn 321, Issue 1-2, 2003, Pages 47-56

  De La Cruz, Jesús ^a   Vioque, Agustín ^a  

^a UNIVERSITY OF SEVILLE   (Spain)

Author keywords

Chloroplast; Cyanophora paradoxa; Nephroselmis olivacea; Porphyra purpurea; Synechocystis

Indexed keywords

RIBONUCLEASE; RIBONUCLEOPROTEIN; RNA;

ALGA; ARTICLE; CONTROLLED STUDY; CYANOBACTERIUM; CYANOPHORA PARADOXA; ENZYME DEGRADATION; HYDROLYSIS; NEPHROSELMIS OLIVACEA; NONHUMAN; PLASTID; PORPHYRA PURPUREA; PRIORITY JOURNAL; RNA STRUCTURE; SEQUENCE HOMOLOGY;

ALGAE; ARCHAEA; BACTERIA (MICROORGANISMS); CYANOPHORA PARADOXA; NEPHROSELMIS; NEPHROSELMIS OLIVACEA; PORPHYRA; PORPHYRA PURPUREA; SYNECHOCYSTIS;

EID: 0242577547     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(03)00831-X     Document Type: Article

References (29)

1. Altman S., Kirsebom L.A. Ribonuclease P. Gesteland R., Cech T., Atkins J. The RNA World. 1999;351-380 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
2. Baum M., Cordier A., Schön A. RNase P from a photosynthetic organelle contains an RNA homologous to the cyanobacterial counterpart. J. Mol. Biol. 257:1996;43-52.
3. Brown J.W. The ribonuclease P database. Nucleic Acids Res. 27:1999;314.
4. Brown J.W., Nolan J.M., Haas E.S., Rubio M.A.T., Major F., Pace N.R. Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements. Proc. Natl. Acad. Sci. U. S. A. 93:1996;3001-3006.
5. Brusca E.M., True H.L., Celander D.W. Novel RNA-binding properties of Pop3p supports a role for eukaryotic RNase P protein subunits in substrate recognition. J. Biol. Chem. 276:2001;42543-42548.
6. Chen J.L., Pace N.R. Identification of the universally conserved core of ribonuclease P RNA. RNA. 3:1997;557-560.
7. Ciesiolka J., Hardt W.D., Schlegl J., Erdmann V.A., Hartmann R.K. Lead-ion-induced cleavage of RNase P RNA. Eur. J. Biochem. 219:1994;49-56.
8. Collins L.J., Moulton V., Penny D. Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP. J. Mol. Evol. 51:2000;194-204.
9. Cordier A., Schön A. Cyanelle RNase P: RNA structure analysis and holoenzyme properties of an organellar ribonucleoprotein enzyme. J. Mol. Biol. 289:1999;9-20.
10. García-Domínguez M., Reyes J.C., Florencio F.J. Glutamine synthetase inactivation by protein-protein interactions. Proc. Natl. Acad. Sci. U. S. A. 96:1999;7161-7166.
11. Hall T.A., Brown J.W. Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins. RNA. 8:2002;296-306.
12. Kazakov S., Altman S. Site-specific cleavage by metal ion cofactors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 88:1991;9193-9197.
13. Kirsebom L.A., Svärd S.G. Base pairing between Escherichia coli RNase P RNA and its substrate. EMBO J. 13:1994;4870-4876.
14. Krasilnikov A.S., Yang X., Pan T., Mondragon A. Crystal structure of the specificity domain of ribonuclease P. Nature. 421:2003;760-764.
15. LaGrandeur T.E., Huttenhofer A., Noller H.F., Pace N.R. Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA. EMBO J. 13:1994;3945-3952.
16. Martin W., Rujan T., Richly E., Hansen A., Cornelsen S., Lins T., Leister D., Stoebe B., Hasegawa M., Penny D. Evolutionary analysis of arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl. Acad. Sci. U. S. A. 99:2002;12246-12251.
17. Massire C., Jaeger L., Westhof E. Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs. RNA. 3:1997;553-556.
18. Niranjanakumari S., Stams T., Crary S.M., Christianson D.W., Fierke C.A. Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA. Proc. Natl. Acad. Sci. U. S. A. 95:1998;15212-15217.
19. Panucci J.A., Haas E.S., Hall T.A., Harris J.K., Brown J.W. RNase P RNAs from some Archaea are catalytically active. Proc. Natl. Acad. Sci. U. S. A. 96:1999;7803-7808.
20. Pascual A., Vioque A. Functional reconstitution of RNase P activity from a plastid RNA subunit and a cyanobacterial protein subunit. FEBS Lett. 442:1999;7-10.
21. Pascual A., Vioque A. Substrate binding and catalysis by ribonuclease P from cyanobacteria and Escherichia coli are differently affected by 3′-terminal CCA in precursors of tRNA. Proc. Natl. Acad. Sci. U. S. A. 96:1999;6672-6677.
22. Qin H., Sosnick T.R., Pan T. Modular construction of a tertiary RNA structure: the specificity domain of the Bacillus subtilis RNase P RNA. Biochemistry. 40:2001;11202-11210.
23. Reith M., Munholland J. Complete nucleotide sequence of the Porphyra purpurea chloroplast genome. Plant Mol. Biol. Rep. 13:1995;333-335.
24. Shevelev E.L., Bryant D.A., Löffelhardt W., Bohnert H.J. Ribonuclease-P RNA gene of the plastid chromosome from Cyanophora paradoxa. DNA Res. 2:1995;231-234.
25. Turmel M., Otis C., Lemieux C. The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes. Proc. Natl. Acad. Sci. U. S. A. 96:1999;10248-10253.
26. Vioque A. The RNase P RNA from cyanobacteria: short tandemly repeated repetitive (STRR) sequences are present within the RNase P RNA gene in heterocyst-forming cyanobacteria. Nucleic Acids Res. 25:1997;3471-3477.
27. Wang M.J., Davis N.W., Gegenheimer P. Novel mechanisms for maturation of chloroplast transfer RNA precursors. EMBO J. 7:1988;1567-1574.
28. Xiao S., Houser-Scott F., Engelke D.R. Eukaryotic ribonuclease P: Increased complexity to cope with the nuclear pre-tRNA pathway. J. Cell. Physiol. 187:2001;11-21.
29. Zito K., Huttenhofer A., Pace N.R. Lead-catalyzed cleavage of ribonuclease P RNA as a probe for integrity of tertiary structure. Nucleic Acids Res. 21:1993;5916-5920.