Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation

Genes and Development

Volumn 14, Issue 7, 2000, Pages 777-782

  Chen, Xinguo ^a   Quinn, Anne Marie ^a   Wolin, Sandra L ^a  

^a YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

D. radiodurans; Ro ribonucleoproteins; UV irradiation

Indexed keywords

RIBONUCLEOPROTEIN; RNA BINDING PROTEIN;

ARTICLE; DEINOCOCCUS RADIODURANS; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL; RADIOSENSITIVITY; ULTRAVIOLET RADIATION;

AMINO ACID SEQUENCE; ANIMALS; AUTOANTIGENS; BASE SEQUENCE; CAENORHABDITIS ELEGANS; GRAM-POSITIVE COCCI; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RADIATION TOLERANCE; RIBONUCLEOPROTEINS; RNA, BACTERIAL; RNA, SMALL CYTOPLASMIC; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; ULTRAVIOLET RAYS;

DEINOCOCCUS RADIODURANS; EUKARYOTA; NEGIBACTERIA; PROKARYOTA;

EID: 0034175553     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (32)

1. Agostini, H.J., J.D. Carroll, and K.W. Minton. 1996. Identification and characterization of uvrA, a DNA repair gene of Deinococcus radiodurans. J. Bacteriol. 178: 6759-6765.
2. Ausubel, F.M., R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl. 1998. Current protocols in molecular biology. John Wiley & Sons, New York, NY.
3. Battista, J.R. 1997. Against all odds: The survival strategies of Deinococcus radiodurans. Annu. Rev. Microbiol 51: 203-224.
4. Birney, E., S. Kumar, and A.R. Krainer. 1993. Analysis of the RNA-recognition motif and RS and RGG domains: Conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res. 21: 5803-5816.
5. Branch, A.D., B.J. Benenfeld, and H.D. Robertson. 1985. Ultraviolet light-induced crosslinking reveals a unique region of local tertiary structure in potato spindle tuber viroid and HeLa 5S RNA. Proc. Natl. Acad. Sci. 82: 6590-6594.
6. Casciola-Rosen, L.A., G. Anhalt, and A. Rosen. 1994. Autoantigens targeted in systemic lupus erythematosus are clustered in two populations of surface structures on apoptotic keratinocytes. J. Exp. Med. 179: 1317-1330.
7. Daly, M.J., L. Ouyang, P. Fuchs, and K.W. Minton. 1994. In vivo damage and recA-dependent repair of plasmid and chromosomal DNA in the radiation-resistant bacterium Deinococcus radiodurans. J. Bacteriol. 176: 3508-3517.
8. Deutscher, S.L., J.B. Harley, and J.D. Keene. 1988. Molecular analysis of the 60-kDa human Ro ribonucleoprotein. Proc. Natl. Acad. Sci. 85: 9479-9483.
9. Donis-Keller, H., A.M. Maxam, and W. Gilbert. 1977. Mapping adenines, guanines and pyrimidines in RNA. Nucleic Acids Res. 4: 2527-2538.
10. Doudney, C.O. 1968. Ultraviolet light effects on the bacterial cell. Curr. Top. Microbiol. Immunol. 46: 116-175.
11. England, T.E., A.G. Bruce, and O.C. Uhlenbeck. 1980. Specific labeling of 3′ termini of RNA with T4 RNA ligase. Methods Enzymol. 65: 65-74.
12. Goffeau, A., B.G. Barrell, H. Bussey, R.W. Davis, B. Dujon, H. Feldmann, F. Galibert, J.D. Hoheisel, C. Jacq, M. Johnston et al. 1996. Life with 6000 genes. Science 27: 546, 563-567.
13. Green, C.D., K.S. Long, H. Shi, and S.L. Wolin. 1998. Binding of the 60-kDa Ro autoantigen to Y RNAs: Evidence for recognition in the major groove of a conserved helix. RNA 4: 750-765.
14. Gutman, P.D., P. Fuchs, L. Ouyang, and K.W. Minton. 1993. Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans. J. Bacteriol. 175: 3581-3590.
15. Gutman, P.D., J.D. Carroll, C.I. Masters, and K.W. Minton. 1994. Sequencing, targeted mutagenesis and expression of a recA gene required for extreme radioresistance of Deinococcus radiodurans. Gene 141: 31-37.
16. Hendrick, J.P., S.L. Wolin, J. Rinke, M.R. Lerner, and J.A. Steitz. 1981. Ro small cytoplasmic ribonucleoproteins are a subclass of La ribonucleoproteins: Further characterization of the Ro and La small ribonucleoproteins from uninfected mammalian cells. Mol. Cell Biol. 1: 1138-1149.
17. Labbe, J.C., S. Hekimi, and L.A. Rokeach. 1999. The levels of the RoRNP-associated Y RNA are dependent upon the presence of ROP-1, the Caenorhabditis elegans Ro60 protein. Genetics 151: 143-150.
18. Masters, C.I. and K.W. Minton. 1992. Promoter probe and shuttle plasmids for Deinococcus radiodurans. Plasmid 28: 258-261.
19. Matera, A.G., M.R. Frey, K. Margelot, and S.L. Wolin. 1995. A perinucleolar compartment contains several RNA polymerase III transcripts as well as the polypyrimidine tract-binding protein, hnRNP 1. J. Cell Biol. 129: 1181-1193.
20. Mathews, D.H., J. Sabina, M. Zuker, and D.H. Turner. 1999. Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure. J. Mol. Biol. 288: 911-940.
21. McCauliffe, D.P. 1996. Antibody penetration into the cells of mice and men. J. Invest. Dermatol. 107: 3-4.
22. O'Brien, C.A. and S.L. Wolin. 1994. A possible role for the 60-kD Ro autoantigen in a discard pathway for defective 5S ribosomal RNA precursors. Genes & Dev. 8: 2891-2903.
23. O'Brien, C.A., K. Margelot, and S.L. Wolin. 1993. Xenopus Ro ribonucleoproteins: Members of an evolutionarily conserved class of cytoplasmic ribonucleoproteins. Proc. Natl. Acad. Sci. 90: 7250-7254.
24. Peterson, R.C., J.L. Doering, and D.D. Brown. 1980. Characterization of two Xenopus somatic 5S DNAs and one minor oocyte-specific 5S DNA. Cell 20: 131-141.
25. Shi, H., C.A. O'Brien, D.J. Van Horn, and S.L. Wolin. 1996. A misfolded form of 5S rRNA is complexed with the Ro and La autoantigens. RNA 2: 769-784.
26. Udupa, K.S., P.A. O'Cain, V. Mattimore, and J.R. Battista. 1994. Novel ionizing radiation-sensitive mutants of Deinococcus radiodurans. J. Bacteriol. 176: 7439-7446.
27. van Gelder, C.W.G., J.P.H.M. Thijssen, E.G.J. Klaassen, C. Sturchler, A. Krol, W.J. van Venrooij, and G.J.M. Pruijn. 1994. Common structural features of the Ro RNP associated hY1 and hY5 RNAs. Nucleic Acids Res. 22: 2498-2506.
28. Van Horn, D.J., D. Eisenberg, C.A. O'Brien, and S.L. Wolin. 1995. Caenorhabditis elegans embryos contain only one major species of Ro RNP. RNA 1: 293-303.
29. von Muhlen, C.A. and E.M. Tan. 1995. Autoantibodies in the diagnosis of systemic rheumatic diseases. Semin. Arthritis Rheum. 24: 323-358.
30. White, O., J.A. Eisen, J.F. Heidelberg, E.K. Hickey, J.D. Peterson, R.J. Dodson, D.H. Haft, M.L. Gwinn, W.C. Nelson, D.L. Richardson et al. 1999. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science 286: 1571-1577.
31. Wolin, S.L. and J.A. Steitz. 1984. The Ro small cytoplasmic ribonucleoproteins: Identification of the antigenic protein and its binding site on the Ro RNAs. Proc. Natl. Acad. Sci. 81: 1996-2000.
32. Yoo, C.J. and S.L. Wolin. 1994. La proteins from Drosophila melanomaster and Saccharomyces cerevisiae: A yeast homolog of the La auto-antigen is dispensable for growth. Mol. Cell. Biol. 14: 5412-5424.