-
1
-
-
0034255334
-
Molecular characterization at the RNA and gene levels of U3 snoRNA from a unicellular green alga
-
Antal M, Mougin A, Kis M, Boros E, Steger G, Jakab G, Solymosy F, Branlant C (2000) Molecular characterization at the RNA and gene levels of U3 snoRNA from a unicellular green alga, Chlamydomonas reinhardtii. Nucleic Acids Res 28: 2959-2968
-
(2000)
Chlamydomonas reinhardtii. Nucleic Acids Res
, vol.28
, pp. 2959-2968
-
-
Antal, M.1
Mougin, A.2
Kis, M.3
Boros, E.4
Steger, G.5
Jakab, G.6
Solymosy, F.7
Branlant, C.8
-
2
-
-
0002759539
-
Unsupervised learning of multiple motifs in biopolymers using expectation maximization
-
Bailey TL, Elkan C (1995) Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning 21: 51-80
-
(1995)
Machine Learning
, vol.21
, pp. 51-80
-
-
Bailey, T.L.1
Elkan, C.2
-
3
-
-
0026761123
-
A method for the rapid sequence-independent amplification of microdissected chromosomal material
-
Bohlander SK, Espinosa III R, Le Beau MM, Rowley JD, Diaz MO (1992) A method for the rapid sequence-independent amplification of microdissected chromosomal material. Genomics 13: 1322-1324
-
(1992)
Genomics
, vol.13
, pp. 1322-1324
-
-
Bohlander, S.K.1
Espinosa III, R.2
Le Beau, M.M.3
Rowley, J.D.4
Diaz, M.O.5
-
4
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on bias and variance
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on bias and variance. Bioinformatics 19: 185-193
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
5
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams AJ, Wheeler R, Wong B, Drenkow J, Yamanaka M, Patel S, Brubaker S, Tammana H, Helt G, Struhl K, Gingeras TR (2004) Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 116: 499-509
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
Kapranov, P.4
Sekinger, E.A.5
Kampa, D.6
Piccolboni, A.7
Sementchenko, V.8
Cheng, J.9
Williams, A.J.10
Wheeler, R.11
Wong, B.12
Drenkow, J.13
Yamanaka, M.14
Patel, S.15
Brubaker, S.16
Tammana, H.17
Helt, G.18
Struhl, K.19
Gingeras, T.R.20
more..
-
6
-
-
0027400117
-
A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila
-
Crowley TE, Hoey T, Liu JK, Jan YN, Jan LY, Tjian R (1993) A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila. Nature 361: 557-561
-
(1993)
Nature
, vol.361
, pp. 557-561
-
-
Crowley, T.E.1
Hoey, T.2
Liu, J.K.3
Jan, Y.N.4
Jan, L.Y.5
Tjian, R.6
-
7
-
-
0019451285
-
Transcription of cloned tRNA and 5S RNA genes in a Drosophila cell free extract
-
Dingermann T, Sharp S, Appel B, DeFranco D, Mount S, Heiermann R, Pongs O, Soll D (1981) Transcription of cloned tRNA and 5S RNA genes in a Drosophila cell free extract. Nucleic Acids Res 9: 3907-3918
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 3907-3918
-
-
Dingermann, T.1
Sharp, S.2
Appel, B.3
DeFranco, D.4
Mount, S.5
Heiermann, R.6
Pongs, O.7
Soll, D.8
-
8
-
-
33747643514
-
A minimal promoter for TFIIIC-dependent in vitro transcription of snoRNA and tRNA genes by RNA polymerase III
-
Guffanti E, Ferrari R, Preti M, Forloni M, Harismendy O, Lefebvre O, Dieci G (2006) A minimal promoter for TFIIIC-dependent in vitro transcription of snoRNA and tRNA genes by RNA polymerase III. J Biol Chem 281: 23945-23957
-
(2006)
J Biol Chem
, vol.281
, pp. 23945-23957
-
-
Guffanti, E.1
Ferrari, R.2
Preti, M.3
Forloni, M.4
Harismendy, O.5
Lefebvre, O.6
Dieci, G.7
-
9
-
-
0030963806
-
Transcription properties of a cell type-specific TATA-binding protein, TRF
-
Hansen SK, Takada S, Jacobson RH, Lis JT, Tjian R (1997) Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell 91: 71-83
-
(1997)
Cell
, vol.91
, pp. 71-83
-
-
Hansen, S.K.1
Takada, S.2
Jacobson, R.H.3
Lis, J.T.4
Tjian, R.5
-
10
-
-
0141625270
-
Genome-wide location of yeast RNA polymerase III transcription machinery
-
Harismendy O, Gendrel CG, Soularue P, Gidrol X, Sentenac A,Werner M, Lefebvre O (2003) Genome-wide location of yeast RNA polymerase III transcription machinery. EMBO J 22: 4738-4747
-
(2003)
EMBO J
, vol.22
, pp. 4738-4747
-
-
Harismendy, O.1
Gendrel, C.G.2
Soularue, P.3
Gidrol, X.4
Sentenac, A.5
Werner, M.6
Lefebvre, O.7
-
11
-
-
0037948267
-
Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression
-
Hochheimer A, Tjian R (2003) Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression. Genes Dev 17: 1309-1320
-
(2003)
Genes Dev
, vol.17
, pp. 1309-1320
-
-
Hochheimer, A.1
Tjian, R.2
-
12
-
-
0037191755
-
TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila
-
Hochheimer A, Zhou S, Zheng S, Holmes MC, Tjian R (2002) TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila. Nature 420: 439-445
-
(2002)
Nature
, vol.420
, pp. 439-445
-
-
Hochheimer, A.1
Zhou, S.2
Zheng, S.3
Holmes, M.C.4
Tjian, R.5
-
13
-
-
0034608084
-
Promoter-selective properties of the TBP-related factor TRF1
-
Holmes MC, Tjian R (2000) Promoter-selective properties of the TBP-related factor TRF1. Science 288: 867-870
-
(2000)
Science
, vol.288
, pp. 867-870
-
-
Holmes, M.C.1
Tjian, R.2
-
14
-
-
24644462724
-
TileMap: Create chromosomal map of tiling array hybridizations
-
Ji H, Wong WH (2005) TileMap: create chromosomal map of tiling array hybridizations. Bioinformatics 21: 3629-3636
-
(2005)
Bioinformatics
, vol.21
, pp. 3629-3636
-
-
Ji, H.1
Wong, W.H.2
-
15
-
-
0346888587
-
On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles
-
Kendziorski CM, Newton MA, Lan H, Gould MN (2003) On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles. Stat Med 22: 3899-3914
-
(2003)
Stat Med
, vol.22
, pp. 3899-3914
-
-
Kendziorski, C.M.1
Newton, M.A.2
Lan, H.3
Gould, M.N.4
-
16
-
-
34247265463
-
-
Published online: 16 November, doi: 10.1111/j.1541-0420.2005.00659.x
-
Keleş S (2006) Mixture modeling for genome-wide localization of transcription factors. Published online: 16 November 2006. doi: 10.1111/j.1541-0420.2005.00659.x, http://www.blackwell-synergy. com/doi/full/10.1111/j.1541-0420.2005.00659.x
-
(2006)
Mixture modeling for genome-wide localization of transcription factors
-
-
Keleş, S.1
-
17
-
-
33744473305
-
Multiple testing methods for ChIP-Chip high density oligonucleotide array data
-
Keleş S, van der Laan MJ, Dudoit S, Cawley SE (2006) Multiple testing methods for ChIP-Chip high density oligonucleotide array data. J Comp Biol 13: 579-613
-
(2006)
J Comp Biol
, vol.13
, pp. 579-613
-
-
Keleş, S.1
van der Laan, M.J.2
Dudoit, S.3
Cawley, S.E.4
-
18
-
-
30844442607
-
The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
-
Kishore S, Stamm S (2005) The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 5758: 230-232
-
(2005)
Science
, vol.5758
, pp. 230-232
-
-
Kishore, S.1
Stamm, S.2
-
19
-
-
0037133942
-
Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
-
Kiss T (2002) Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109: 145-148
-
(2002)
Cell
, vol.109
, pp. 145-148
-
-
Kiss, T.1
-
20
-
-
2442606759
-
Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes
-
Moqtaderi Z, Struhl K (2004) Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes. Mol Cell Biol 24: 4118-4127
-
(2004)
Mol Cell Biol
, vol.24
, pp. 4118-4127
-
-
Moqtaderi, Z.1
Struhl, K.2
-
21
-
-
4444235995
-
Detecting differential gene expression with a semiparametric hierarchical mixture method
-
Newton MA, Noueiry A, Sarkar D, Ahlquist P (2004) Detecting differential gene expression with a semiparametric hierarchical mixture method. Biostatistics 5: 155-176
-
(2004)
Biostatistics
, vol.5
, pp. 155-176
-
-
Newton, M.A.1
Noueiry, A.2
Sarkar, D.3
Ahlquist, P.4
-
22
-
-
0042161896
-
Control of cell number by Drosophila FOXO: Downstream and feedback regulation of the insulin receptor pathway
-
Puig O, Marr MT, Ruhf ML, Tjian R (2003) Control of cell number by Drosophila FOXO: downstream and feedback regulation of the insulin receptor pathway. Genes Dev 17: 2006-2020
-
(2003)
Genes Dev
, vol.17
, pp. 2006-2020
-
-
Puig, O.1
Marr, M.T.2
Ruhf, M.L.3
Tjian, R.4
-
23
-
-
0345598934
-
The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships
-
Roberts DN, Stewart AJ, Huff JT, Cairns BR (2003) The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships. Proc Natl Acad Sci USA 100: 14695-14700
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 14695-14700
-
-
Roberts, D.N.1
Stewart, A.J.2
Huff, J.T.3
Cairns, B.R.4
-
24
-
-
0037108150
-
Recruitment of RNA polymerase III to its target promoters
-
Schramm L, Hernandez N (2002) Recruitment of RNA polymerase III to its target promoters. Genes Dev 16: 2593-2620
-
(2002)
Genes Dev
, vol.16
, pp. 2593-2620
-
-
Schramm, L.1
Hernandez, N.2
-
25
-
-
0034716931
-
A TRF1:BRF complex directs Drosophila RNA polymerase III transcription
-
Takada S, Lis JT, Zhou S, Tjian R (2000) A TRF1:BRF complex directs Drosophila RNA polymerase III transcription. Cell 101: 459-469
-
(2000)
Cell
, vol.101
, pp. 459-469
-
-
Takada, S.1
Lis, J.T.2
Zhou, S.3
Tjian, R.4
-
26
-
-
0035109393
-
Non-coding snoRNA host genes in Drosophila: Expression strategies for modification guide snoRNAs
-
Tycowski KT, Steitz JA (2001) Non-coding snoRNA host genes in Drosophila: expression strategies for modification guide snoRNAs. Eur J Cell Biol 80: 119-125
-
(2001)
Eur J Cell Biol
, vol.80
, pp. 119-125
-
-
Tycowski, K.T.1
Steitz, J.A.2
-
27
-
-
0022414359
-
Upstream sequences modulate the internal promoter of the human 7SL RNA gene
-
Ullu E, Weiner AM (1985) Upstream sequences modulate the internal promoter of the human 7SL RNA gene. Nature 318: 371-374
-
(1985)
Nature
, vol.318
, pp. 371-374
-
-
Ullu, E.1
Weiner, A.M.2
-
28
-
-
22344457014
-
enoLOGOS: A versatile web tool for energy normalized sequence logos
-
Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV (2005) enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Res 33: W389-W392
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Workman, C.T.1
Yin, Y.2
Corcoran, D.L.3
Ideker, T.4
Stormo, G.D.5
Benos, P.V.6
-
29
-
-
0038719826
-
RNomics in Drosophila melanogaster: Identification of 66 candidates for novel non-messenger RNAs
-
Yuan G, Klambt C, Bachellerie JP, Brosius J, Huttenhofer A (2003) RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res 31: 2495-2507
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2495-2507
-
-
Yuan, G.1
Klambt, C.2
Bachellerie, J.P.3
Brosius, J.4
Huttenhofer, A.5
-
30
-
-
22044445814
-
Plant 7SL RNA genes belong to type 4 of RNA polymerase III- dependent genes that are composed of mixed promoters
-
Yukawa Y, Felis M, Englert M, Stojanov M, Matousek J, Beier H, Sugiura M (2005) Plant 7SL RNA genes belong to type 4 of RNA polymerase III- dependent genes that are composed of mixed promoters. Plant J 43: 97-106
-
(2005)
Plant J
, vol.43
, pp. 97-106
-
-
Yukawa, Y.1
Felis, M.2
Englert, M.3
Stojanov, M.4
Matousek, J.5
Beier, H.6
Sugiura, M.7
-
31
-
-
0034839969
-
Transcription factor MIZ-1 is regulated via microtubule association
-
Ziegelbauer J, Shan B, Yager D, Larabell C, Hoffmann B, Tjian R (2001) Transcription factor MIZ-1 is regulated via microtubule association. Mol Cell 8: 339-349
-
(2001)
Mol Cell
, vol.8
, pp. 339-349
-
-
Ziegelbauer, J.1
Shan, B.2
Yager, D.3
Larabell, C.4
Hoffmann, B.5
Tjian, R.6
|