메뉴 건너뛰기




Volumn 26, Issue 1, 2007, Pages 79-89

Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription

Author keywords

ChIP on chip analysis; RNA polymerase III transcription; Small nonmessenger RNA; TBP related factor

Indexed keywords

BRF PRTOEIN; POL PROTEIN; PROTEIN; TELOMERIC REPEAT BINDING FACTOR 1; TRANSFER RNA; UNCLASSIFIED DRUG; DEOXYRIBONUCLEASE I; DNA DIRECTED DNA POLYMERASE GAMMA; SMALL NUCLEOLAR RNA; TRANSCRIPTION FACTOR IIIB;

EID: 33846195889     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/sj.emboj.7601448     Document Type: Article
Times cited : (36)

References (31)
  • 2
    • 0002759539 scopus 로고
    • Unsupervised learning of multiple motifs in biopolymers using expectation maximization
    • Bailey TL, Elkan C (1995) Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning 21: 51-80
    • (1995) Machine Learning , vol.21 , pp. 51-80
    • Bailey, T.L.1    Elkan, C.2
  • 3
    • 0026761123 scopus 로고
    • A method for the rapid sequence-independent amplification of microdissected chromosomal material
    • Bohlander SK, Espinosa III R, Le Beau MM, Rowley JD, Diaz MO (1992) A method for the rapid sequence-independent amplification of microdissected chromosomal material. Genomics 13: 1322-1324
    • (1992) Genomics , vol.13 , pp. 1322-1324
    • Bohlander, S.K.1    Espinosa III, R.2    Le Beau, M.M.3    Rowley, J.D.4    Diaz, M.O.5
  • 4
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on bias and variance
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on bias and variance. Bioinformatics 19: 185-193
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 6
    • 0027400117 scopus 로고
    • A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila
    • Crowley TE, Hoey T, Liu JK, Jan YN, Jan LY, Tjian R (1993) A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila. Nature 361: 557-561
    • (1993) Nature , vol.361 , pp. 557-561
    • Crowley, T.E.1    Hoey, T.2    Liu, J.K.3    Jan, Y.N.4    Jan, L.Y.5    Tjian, R.6
  • 8
    • 33747643514 scopus 로고    scopus 로고
    • A minimal promoter for TFIIIC-dependent in vitro transcription of snoRNA and tRNA genes by RNA polymerase III
    • Guffanti E, Ferrari R, Preti M, Forloni M, Harismendy O, Lefebvre O, Dieci G (2006) A minimal promoter for TFIIIC-dependent in vitro transcription of snoRNA and tRNA genes by RNA polymerase III. J Biol Chem 281: 23945-23957
    • (2006) J Biol Chem , vol.281 , pp. 23945-23957
    • Guffanti, E.1    Ferrari, R.2    Preti, M.3    Forloni, M.4    Harismendy, O.5    Lefebvre, O.6    Dieci, G.7
  • 9
    • 0030963806 scopus 로고    scopus 로고
    • Transcription properties of a cell type-specific TATA-binding protein, TRF
    • Hansen SK, Takada S, Jacobson RH, Lis JT, Tjian R (1997) Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell 91: 71-83
    • (1997) Cell , vol.91 , pp. 71-83
    • Hansen, S.K.1    Takada, S.2    Jacobson, R.H.3    Lis, J.T.4    Tjian, R.5
  • 11
    • 0037948267 scopus 로고    scopus 로고
    • Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression
    • Hochheimer A, Tjian R (2003) Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression. Genes Dev 17: 1309-1320
    • (2003) Genes Dev , vol.17 , pp. 1309-1320
    • Hochheimer, A.1    Tjian, R.2
  • 12
    • 0037191755 scopus 로고    scopus 로고
    • TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila
    • Hochheimer A, Zhou S, Zheng S, Holmes MC, Tjian R (2002) TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila. Nature 420: 439-445
    • (2002) Nature , vol.420 , pp. 439-445
    • Hochheimer, A.1    Zhou, S.2    Zheng, S.3    Holmes, M.C.4    Tjian, R.5
  • 13
    • 0034608084 scopus 로고    scopus 로고
    • Promoter-selective properties of the TBP-related factor TRF1
    • Holmes MC, Tjian R (2000) Promoter-selective properties of the TBP-related factor TRF1. Science 288: 867-870
    • (2000) Science , vol.288 , pp. 867-870
    • Holmes, M.C.1    Tjian, R.2
  • 14
    • 24644462724 scopus 로고    scopus 로고
    • TileMap: Create chromosomal map of tiling array hybridizations
    • Ji H, Wong WH (2005) TileMap: create chromosomal map of tiling array hybridizations. Bioinformatics 21: 3629-3636
    • (2005) Bioinformatics , vol.21 , pp. 3629-3636
    • Ji, H.1    Wong, W.H.2
  • 15
    • 0346888587 scopus 로고    scopus 로고
    • On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles
    • Kendziorski CM, Newton MA, Lan H, Gould MN (2003) On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles. Stat Med 22: 3899-3914
    • (2003) Stat Med , vol.22 , pp. 3899-3914
    • Kendziorski, C.M.1    Newton, M.A.2    Lan, H.3    Gould, M.N.4
  • 16
    • 34247265463 scopus 로고    scopus 로고
    • Published online: 16 November, doi: 10.1111/j.1541-0420.2005.00659.x
    • Keleş S (2006) Mixture modeling for genome-wide localization of transcription factors. Published online: 16 November 2006. doi: 10.1111/j.1541-0420.2005.00659.x, http://www.blackwell-synergy. com/doi/full/10.1111/j.1541-0420.2005.00659.x
    • (2006) Mixture modeling for genome-wide localization of transcription factors
    • Keleş, S.1
  • 17
    • 33744473305 scopus 로고    scopus 로고
    • Multiple testing methods for ChIP-Chip high density oligonucleotide array data
    • Keleş S, van der Laan MJ, Dudoit S, Cawley SE (2006) Multiple testing methods for ChIP-Chip high density oligonucleotide array data. J Comp Biol 13: 579-613
    • (2006) J Comp Biol , vol.13 , pp. 579-613
    • Keleş, S.1    van der Laan, M.J.2    Dudoit, S.3    Cawley, S.E.4
  • 18
    • 30844442607 scopus 로고    scopus 로고
    • The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
    • Kishore S, Stamm S (2005) The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 5758: 230-232
    • (2005) Science , vol.5758 , pp. 230-232
    • Kishore, S.1    Stamm, S.2
  • 19
    • 0037133942 scopus 로고    scopus 로고
    • Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
    • Kiss T (2002) Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109: 145-148
    • (2002) Cell , vol.109 , pp. 145-148
    • Kiss, T.1
  • 20
    • 2442606759 scopus 로고    scopus 로고
    • Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes
    • Moqtaderi Z, Struhl K (2004) Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes. Mol Cell Biol 24: 4118-4127
    • (2004) Mol Cell Biol , vol.24 , pp. 4118-4127
    • Moqtaderi, Z.1    Struhl, K.2
  • 21
    • 4444235995 scopus 로고    scopus 로고
    • Detecting differential gene expression with a semiparametric hierarchical mixture method
    • Newton MA, Noueiry A, Sarkar D, Ahlquist P (2004) Detecting differential gene expression with a semiparametric hierarchical mixture method. Biostatistics 5: 155-176
    • (2004) Biostatistics , vol.5 , pp. 155-176
    • Newton, M.A.1    Noueiry, A.2    Sarkar, D.3    Ahlquist, P.4
  • 22
    • 0042161896 scopus 로고    scopus 로고
    • Control of cell number by Drosophila FOXO: Downstream and feedback regulation of the insulin receptor pathway
    • Puig O, Marr MT, Ruhf ML, Tjian R (2003) Control of cell number by Drosophila FOXO: downstream and feedback regulation of the insulin receptor pathway. Genes Dev 17: 2006-2020
    • (2003) Genes Dev , vol.17 , pp. 2006-2020
    • Puig, O.1    Marr, M.T.2    Ruhf, M.L.3    Tjian, R.4
  • 23
    • 0345598934 scopus 로고    scopus 로고
    • The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships
    • Roberts DN, Stewart AJ, Huff JT, Cairns BR (2003) The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships. Proc Natl Acad Sci USA 100: 14695-14700
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 14695-14700
    • Roberts, D.N.1    Stewart, A.J.2    Huff, J.T.3    Cairns, B.R.4
  • 24
    • 0037108150 scopus 로고    scopus 로고
    • Recruitment of RNA polymerase III to its target promoters
    • Schramm L, Hernandez N (2002) Recruitment of RNA polymerase III to its target promoters. Genes Dev 16: 2593-2620
    • (2002) Genes Dev , vol.16 , pp. 2593-2620
    • Schramm, L.1    Hernandez, N.2
  • 25
    • 0034716931 scopus 로고    scopus 로고
    • A TRF1:BRF complex directs Drosophila RNA polymerase III transcription
    • Takada S, Lis JT, Zhou S, Tjian R (2000) A TRF1:BRF complex directs Drosophila RNA polymerase III transcription. Cell 101: 459-469
    • (2000) Cell , vol.101 , pp. 459-469
    • Takada, S.1    Lis, J.T.2    Zhou, S.3    Tjian, R.4
  • 26
    • 0035109393 scopus 로고    scopus 로고
    • Non-coding snoRNA host genes in Drosophila: Expression strategies for modification guide snoRNAs
    • Tycowski KT, Steitz JA (2001) Non-coding snoRNA host genes in Drosophila: expression strategies for modification guide snoRNAs. Eur J Cell Biol 80: 119-125
    • (2001) Eur J Cell Biol , vol.80 , pp. 119-125
    • Tycowski, K.T.1    Steitz, J.A.2
  • 27
    • 0022414359 scopus 로고
    • Upstream sequences modulate the internal promoter of the human 7SL RNA gene
    • Ullu E, Weiner AM (1985) Upstream sequences modulate the internal promoter of the human 7SL RNA gene. Nature 318: 371-374
    • (1985) Nature , vol.318 , pp. 371-374
    • Ullu, E.1    Weiner, A.M.2
  • 29
    • 0038719826 scopus 로고    scopus 로고
    • RNomics in Drosophila melanogaster: Identification of 66 candidates for novel non-messenger RNAs
    • Yuan G, Klambt C, Bachellerie JP, Brosius J, Huttenhofer A (2003) RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res 31: 2495-2507
    • (2003) Nucleic Acids Res , vol.31 , pp. 2495-2507
    • Yuan, G.1    Klambt, C.2    Bachellerie, J.P.3    Brosius, J.4    Huttenhofer, A.5
  • 30
    • 22044445814 scopus 로고    scopus 로고
    • Plant 7SL RNA genes belong to type 4 of RNA polymerase III- dependent genes that are composed of mixed promoters
    • Yukawa Y, Felis M, Englert M, Stojanov M, Matousek J, Beier H, Sugiura M (2005) Plant 7SL RNA genes belong to type 4 of RNA polymerase III- dependent genes that are composed of mixed promoters. Plant J 43: 97-106
    • (2005) Plant J , vol.43 , pp. 97-106
    • Yukawa, Y.1    Felis, M.2    Englert, M.3    Stojanov, M.4    Matousek, J.5    Beier, H.6    Sugiura, M.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.