-
1
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in caenorhabditis elegans
-
DOI 10.1038/35888
-
A. Fire, S. Xu, M.K. Montgomery, S.A. Kostas, S.E. Driver, and C.C. Mello Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 391 1998 806 811 (Pubitemid 28099681)
-
(1998)
Nature
, vol.391
, Issue.6669
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
2
-
-
77954855829
-
Non-coding RNAs: Meet thy masters
-
F.F. Costa Non-coding RNAs: meet thy masters Bioessays 32 2010 599 608
-
(2010)
Bioessays
, vol.32
, pp. 599-608
-
-
Costa, F.F.1
-
5
-
-
76249108851
-
Catalogues of mammalian long noncoding RNAs: Modest conservation and incompleteness
-
A.C. Marques, and C.P. Ponting Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness Genome Biol. 10 2009 R124
-
(2009)
Genome Biol.
, vol.10
, pp. 124
-
-
Marques, A.C.1
Ponting, C.P.2
-
6
-
-
78049308870
-
Long non-coding RNAs: Guardians of development
-
S. van Leeuwen, and H. Mikkers Long non-coding RNAs: guardians of development Differentiation 80 2010 175 183
-
(2010)
Differentiation
, vol.80
, pp. 175-183
-
-
Van Leeuwen, S.1
Mikkers, H.2
-
7
-
-
78651397147
-
Large non-coding RNAs: Missing links in cancer?
-
M. Huarte, and J.L. Rinn Large non-coding RNAs: missing links in cancer? Hum. Mol. Genet. 19 2010 R152 R161
-
(2010)
Hum. Mol. Genet.
, vol.19
-
-
Huarte, M.1
Rinn, J.L.2
-
8
-
-
78149403591
-
MacroRNA underdogs in a microRNA world: Evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA
-
L. Lipovich, R. Johnson, and C.Y. Lin MacroRNA underdogs in a microRNA world: evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA Biochim. Biophys. Acta 1799 2010 597 615
-
(2010)
Biochim. Biophys. Acta
, vol.1799
, pp. 597-615
-
-
Lipovich, L.1
Johnson, R.2
Lin, C.Y.3
-
9
-
-
78651390167
-
Long intergenic noncoding RNAs: New links in cancer progression
-
M.C. Tsai, R.C. Spitale, and H.Y. Chang Long intergenic noncoding RNAs: new links in cancer progression Cancer Res. 71 2011 3 7
-
(2011)
Cancer Res.
, vol.71
, pp. 3-7
-
-
Tsai, M.C.1
Spitale, R.C.2
Chang, H.Y.3
-
10
-
-
77955757309
-
Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1
-
F. Mohammad, T. Mondal, N. Guseva, G.K. Pandey, and C. Kanduri Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1 Development 137 2010 2493 2499
-
(2010)
Development
, vol.137
, pp. 2493-2499
-
-
Mohammad, F.1
Mondal, T.2
Guseva, N.3
Pandey, G.K.4
Kanduri, C.5
-
11
-
-
79959355182
-
Epigenetics of imprinted long noncoding RNAs
-
F. Mohammad, T. Mondal, and C. Kanduri Epigenetics of imprinted long noncoding RNAs Epigenetics 4 2009 277 286
-
(2009)
Epigenetics
, vol.4
, pp. 277-286
-
-
Mohammad, F.1
Mondal, T.2
Kanduri, C.3
-
12
-
-
54049138948
-
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
-
R.R. Pandey, T. Mondal, F. Mohammad, S. Enroth, L. Redrup, J. Komorowski, T. Nagano, D. Mancini-Dinardo, and C. Kanduri Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation Mol. Cell 32 2008 232 246
-
(2008)
Mol. Cell
, vol.32
, pp. 232-246
-
-
Pandey, R.R.1
Mondal, T.2
Mohammad, F.3
Enroth, S.4
Redrup, L.5
Komorowski, J.6
Nagano, T.7
Mancini-Dinardo, D.8
Kanduri, C.9
-
13
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
M. Huarte, M. Guttman, D. Feldser, M. Garber, M.J. Koziol, D. Kenzelmann-Broz, A.M. Khalil, O. Zuk, I. Amit, M. Rabani, L.D. Attardi, A. Regev, E.S. Lander, T. Jacks, and J.L. Rinn A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response Cell 142 2010 409 419
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
Khalil, A.M.7
Zuk, O.8
Amit, I.9
Rabani, M.10
Attardi, L.D.11
Regev, A.12
Lander, E.S.13
Jacks, T.14
Rinn, J.L.15
-
14
-
-
60149091189
-
Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
-
N. Sonenberg, and A.G. Hinnebusch Regulation of translation initiation in eukaryotes: mechanisms and biological targets Cell 136 2009 731 745
-
(2009)
Cell
, vol.136
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
15
-
-
77956276464
-
TRNA biology charges to the front
-
E.M. Phizicky, and A.K. Hopper tRNA biology charges to the front Genes Dev. 24 2010 1832 1860
-
(2010)
Genes Dev.
, vol.24
, pp. 1832-1860
-
-
Phizicky, E.M.1
Hopper, A.K.2
-
16
-
-
0035252889
-
Ribosome fidelity: tRNA discrimination, proofreading and induced fit
-
DOI 10.1016/S0968-0004(00)01737-0, PII S0968000400017370
-
M.V. Rodnina, and W. Wintermeyer Ribosome fidelity: tRNA discrimination, proofreading and induced fit Trends Biochem. Sci. 26 2001 124 130 (Pubitemid 32144748)
-
(2001)
Trends in Biochemical Sciences
, vol.26
, Issue.2
, pp. 124-130
-
-
Rodnina, M.V.1
Wintermeyer, W.2
-
17
-
-
5044229348
-
Molecular mechanisms of translational control
-
DOI 10.1038/nrm1488
-
F. Gebauer, and M.W. Hentze Molecular mechanisms of translational control Nat. Rev. Mol. Cell Biol. 5 2004 827 835 (Pubitemid 39336276)
-
(2004)
Nature Reviews Molecular Cell Biology
, vol.5
, Issue.10
, pp. 827-835
-
-
Gebauer, F.1
Hentze, M.W.2
-
18
-
-
33847187076
-
Non-coding RNAs: Lessons from the small nuclear and small nucleolar RNAs
-
A.G. Matera, R.M. Terns, and M.P. Terns Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs Nat. Rev. Mol. Cell Biol. 8 2007 209 220
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 209-220
-
-
Matera, A.G.1
Terns, R.M.2
Terns, M.P.3
-
19
-
-
0037133942
-
Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
-
DOI 10.1016/S0092-8674(02)00718-3
-
T. Kiss Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions Cell 109 2002 145 148 (Pubitemid 34518252)
-
(2002)
Cell
, vol.109
, Issue.2
, pp. 145-148
-
-
Kiss, T.1
-
20
-
-
34250836327
-
The multifunctional nucleolus
-
DOI 10.1038/nrm2184, PII NRM2184
-
F.M. Boisvert, S. van Koningsbruggen, J. Navascues, and A.I. Lamond The multifunctional nucleolus Nat. Rev. Mol. Cell Biol. 8 2007 574 585 (Pubitemid 46985376)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.7
, pp. 574-585
-
-
Boisvert, F.-M.1
Van Koningsbruggen, S.2
Navascues, J.3
Lamond, A.I.4
-
21
-
-
55949112523
-
A human snoRNA with microRNA-like functions
-
C. Ender, A. Krek, M.R. Friedlander, M. Beitzinger, L. Weinmann, W. Chen, S. Pfeffer, N. Rajewsky, and G. Meister A human snoRNA with microRNA-like functions Mol. Cell 32 2008 519 528
-
(2008)
Mol. Cell
, vol.32
, pp. 519-528
-
-
Ender, C.1
Krek, A.2
Friedlander, M.R.3
Beitzinger, M.4
Weinmann, L.5
Chen, W.6
Pfeffer, S.7
Rajewsky, N.8
Meister, G.9
-
22
-
-
77952473473
-
The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing
-
S. Kishore, A. Khanna, Z. Zhang, J. Hui, P.J. Balwierz, M. Stefan, C. Beach, R.D. Nicholls, M. Zavolan, and S. Stamm The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing Hum. Mol. Genet. 19 2010 1153 1164
-
(2010)
Hum. Mol. Genet.
, vol.19
, pp. 1153-1164
-
-
Kishore, S.1
Khanna, A.2
Zhang, Z.3
Hui, J.4
Balwierz, P.J.5
Stefan, M.6
Beach, C.7
Nicholls, R.D.8
Zavolan, M.9
Stamm, S.10
-
23
-
-
30844442607
-
The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
-
DOI 10.1126/science.1118265
-
S. Kishore, and S. Stamm The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C Science 311 2006 230 232 (Pubitemid 43108188)
-
(2006)
Science
, vol.311
, Issue.5758
, pp. 230-232
-
-
Kishore, S.1
Stamm, S.2
-
24
-
-
85011940677
-
Role of the snRNAs in spliceosomal active site
-
S. Valadkhan Role of the snRNAs in spliceosomal active site RNA Biol. 7 2010 345 353
-
(2010)
RNA Biol.
, vol.7
, pp. 345-353
-
-
Valadkhan, S.1
-
25
-
-
77957220075
-
InTERTpreting telomerase structure and function
-
H.D. Wyatt, S.C. West, and T.L. Beattie InTERTpreting telomerase structure and function Nucleic Acids Res. 38 2010 5609 5622
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5609-5622
-
-
Wyatt, H.D.1
West, S.C.2
Beattie, T.L.3
-
26
-
-
66449089824
-
7SK RNA, a non-coding RNA regulating P-TEFb, a general transcription factor
-
G. Diribarne, and O. Bensaude 7SK RNA, a non-coding RNA regulating P-TEFb, a general transcription factor RNA Biol. 6 2009 122 128
-
(2009)
RNA Biol.
, vol.6
, pp. 122-128
-
-
Diribarne, G.1
Bensaude, O.2
-
27
-
-
33746403681
-
Controlling the Elongation Phase of Transcription with P-TEFb
-
DOI 10.1016/j.molcel.2006.06.014, PII S1097276506004291
-
B.M. Peterlin, and D.H. Price Controlling the elongation phase of transcription with P-TEFb Mol. Cell 23 2006 297 305 (Pubitemid 44128850)
-
(2006)
Molecular Cell
, vol.23
, Issue.3
, pp. 297-305
-
-
Peterlin, B.M.1
Price, D.H.2
-
29
-
-
49749133953
-
Mechanistic principles of chromatin remodeling guided by siRNAs and miRNAs
-
S. Gonzalez, D.G. Pisano, and M. Serrano Mechanistic principles of chromatin remodeling guided by siRNAs and miRNAs Cell Cycle 7 2008 2601 2608
-
(2008)
Cell Cycle
, vol.7
, pp. 2601-2608
-
-
Gonzalez, S.1
Pisano, D.G.2
Serrano, M.3
-
30
-
-
79959347056
-
Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters
-
S.T. Younger, and D.R. Corey Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters Nucleic Acids Res. 2011
-
(2011)
Nucleic Acids Res.
-
-
Younger, S.T.1
Corey, D.R.2
-
31
-
-
77955900706
-
Transcriptional regulation by small RNAs at sequences downstream from 3′ gene termini
-
X. Yue, J.C. Schwartz, Y. Chu, S.T. Younger, K.T. Gagnon, S. Elbashir, B.A. Janowski, and D.R. Corey Transcriptional regulation by small RNAs at sequences downstream from 3′ gene termini Nat. Chem. Biol. 6 2010 621 629
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 621-629
-
-
Yue, X.1
Schwartz, J.C.2
Chu, Y.3
Younger, S.T.4
Gagnon, K.T.5
Elbashir, S.6
Janowski, B.A.7
Corey, D.R.8
-
32
-
-
78650448697
-
Activation of LDL receptor expression by small RNAs complementary to a noncoding transcript that overlaps the LDLR promoter
-
M. Matsui, F. Sakurai, S. Elbashir, D.J. Foster, M. Manoharan, and D.R. Corey Activation of LDL receptor expression by small RNAs complementary to a noncoding transcript that overlaps the LDLR promoter Chem. Biol. 17 2010 1344 1355
-
(2010)
Chem. Biol.
, vol.17
, pp. 1344-1355
-
-
Matsui, M.1
Sakurai, F.2
Elbashir, S.3
Foster, D.J.4
Manoharan, M.5
Corey, D.R.6
-
33
-
-
57849140661
-
Divergent transcription from active promoters
-
A.C. Seila, J.M. Calabrese, S.S. Levine, G.W. Yeo, P.B. Rahl, R.A. Flynn, R.A. Young, and P.A. Sharp Divergent transcription from active promoters Science 322 2008 1849 1851
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
34
-
-
60549115605
-
Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
-
Encode Transcriptome Project A. Spring Harbor Laboratory Encode Transcriptome Project C.
-
Affymetrix ENCODE Transcriptome Project, and Cold Spring Harbor Laboratory ENCODE Transcriptome Project Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs Nature 457 2009 1028 1032
-
(2009)
Nature
, vol.457
, pp. 1028-1032
-
-
-
35
-
-
67349157682
-
Tiny RNAs associated with transcription start sites in animals
-
R.J. Taft, E.A. Glazov, N. Cloonan, C. Simons, S. Stephen, G.J. Faulkner, T. Lassmann, A.R. Forrest, S.M. Grimmond, K. Schroder, K. Irvine, T. Arakawa, M. Nakamura, A. Kubosaki, K. Hayashida, C. Kawazu, M. Murata, H. Nishiyori, S. Fukuda, J. Kawai, C.O. Daub, D.A. Hume, H. Suzuki, V. Orlando, P. Carninci, Y. Hayashizaki, and J.S. Mattick Tiny RNAs associated with transcription start sites in animals Nat. Genet. 41 2009 572 578
-
(2009)
Nat. Genet.
, vol.41
, pp. 572-578
-
-
Taft, R.J.1
Glazov, E.A.2
Cloonan, N.3
Simons, C.4
Stephen, S.5
Faulkner, G.J.6
Lassmann, T.7
Forrest, A.R.8
Grimmond, S.M.9
Schroder, K.10
Irvine, K.11
Arakawa, T.12
Nakamura, M.13
Kubosaki, A.14
Hayashida, K.15
Kawazu, C.16
Murata, M.17
Nishiyori, H.18
Fukuda, S.19
Kawai, J.20
Daub, C.O.21
Hume, D.A.22
Suzuki, H.23
Orlando, V.24
Carninci, P.25
Hayashizaki, Y.26
Mattick, J.S.27
more..
-
36
-
-
68449095847
-
Evolution, biogenesis and function of promoter-associated RNAs
-
R.J. Taft, C.D. Kaplan, C. Simons, and J.S. Mattick Evolution, biogenesis and function of promoter-associated RNAs Cell Cycle 8 2009 2332 2338
-
(2009)
Cell Cycle
, vol.8
, pp. 2332-2338
-
-
Taft, R.J.1
Kaplan, C.D.2
Simons, C.3
Mattick, J.S.4
-
37
-
-
85011936073
-
Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin
-
A.M. Burroughs, Y. Ando, M.L. Hoon, Y. Tomaru, H. Suzuki, Y. Hayashizaki, and C.O. Daub Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin RNA Biol. 8 2011
-
(2011)
RNA Biol.
, vol.8
-
-
Burroughs, A.M.1
Ando, Y.2
Hoon, M.L.3
Tomaru, Y.4
Suzuki, H.5
Hayashizaki, Y.6
Daub, C.O.7
-
38
-
-
77955419755
-
Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans
-
R.J. Taft, C. Simons, S. Nahkuri, H. Oey, D.J. Korbie, T.R. Mercer, J. Holst, W. Ritchie, J.J. Wong, J.E. Rasko, D.S. Rokhsar, B.M. Degnan, and J.S. Mattick Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans Nat. Struct. Mol. Biol. 17 2010 1030 1034
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1030-1034
-
-
Taft, R.J.1
Simons, C.2
Nahkuri, S.3
Oey, H.4
Korbie, D.J.5
Mercer, T.R.6
Holst, J.7
Ritchie, W.8
Wong, J.J.9
Rasko, J.E.10
Rokhsar, D.S.11
Degnan, B.M.12
Mattick, J.S.13
-
39
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
P. Preker, J. Nielsen, S. Kammler, S. Lykke-Andersen, M.S. Christensen, C.K. Mapendano, M.H. Schierup, and T.H. Jensen RNA exosome depletion reveals transcription upstream of active human promoters Science 322 2008 1851 1854
-
(2008)
Science
, vol.322
, pp. 1851-1854
-
-
Preker, P.1
Nielsen, J.2
Kammler, S.3
Lykke-Andersen, S.4
Christensen, M.S.5
Mapendano, C.K.6
Schierup, M.H.7
Jensen, T.H.8
-
40
-
-
70449953975
-
The complex eukaryotic transcriptome: Unexpected pervasive transcription and novel small RNAs
-
A. Jacquier The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs Nat. Rev. Genet. 10 2009 833 844
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 833-844
-
-
Jacquier, A.1
-
42
-
-
78751477191
-
Gene silencing by microRNAs: Contributions of translational repression and mRNA decay
-
E. Huntzinger, and E. Izaurralde Gene silencing by microRNAs: contributions of translational repression and mRNA decay Nat. Rev. Genet. 12 2011 99 110
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 99-110
-
-
Huntzinger, E.1
Izaurralde, E.2
-
43
-
-
79551627496
-
A parsimonious model for gene regulation by miRNAs
-
S. Djuranovic, A. Nahvi, and R. Green A parsimonious model for gene regulation by miRNAs Science 331 2011 550 553
-
(2011)
Science
, vol.331
, pp. 550-553
-
-
Djuranovic, S.1
Nahvi, A.2
Green, R.3
-
44
-
-
78650223089
-
MicroRNAs in embryonic stem cell function and fate
-
G. Tiscornia, and J.C. Izpisua Belmonte MicroRNAs in embryonic stem cell function and fate Genes. Dev. 24 2010 2732 2741
-
(2010)
Genes. Dev.
, vol.24
, pp. 2732-2741
-
-
Tiscornia, G.1
Izpisua Belmonte, J.C.2
-
45
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
J. Krol, I. Loedige, and W. Filipowicz The widespread regulation of microRNA biogenesis, function and decay Nat. Rev. Genet. 11 2010 597 610
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
46
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
R.W. Carthew, and E.J. Sontheimer Origins and mechanisms of miRNAs and siRNAs Cell 136 2009 642 655
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
47
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
DOI 10.1016/S0092-8674(03)00801-8
-
A. Khvorova, A. Reynolds, and S.D. Jayasena Functional siRNAs and miRNAs exhibit strand bias Cell 115 2003 209 216 (Pubitemid 37329584)
-
(2003)
Cell
, vol.115
, Issue.2
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
48
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
DOI 10.1016/S0092-8674(03)00759-1
-
D.S. Schwarz, G. Hutvagner, T. Du, Z. Xu, N. Aronin, and P.D. Zamore Asymmetry in the assembly of the RNAi enzyme complex Cell 115 2003 199 208 (Pubitemid 37329583)
-
(2003)
Cell
, vol.115
, Issue.2
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
49
-
-
70449127022
-
Hierarchical rules for Argonaute loading in Drosophila
-
B. Czech, R. Zhou, Y. Erlich, J. Brennecke, R. Binari, C. Villalta, A. Gordon, N. Perrimon, and G.J. Hannon Hierarchical rules for Argonaute loading in Drosophila Mol. Cell 36 2009 445 456
-
(2009)
Mol. Cell
, vol.36
, pp. 445-456
-
-
Czech, B.1
Zhou, R.2
Erlich, Y.3
Brennecke, J.4
Binari, R.5
Villalta, C.6
Gordon, A.7
Perrimon, N.8
Hannon, G.J.9
-
50
-
-
70350271175
-
Sequence features associated with microRNA strand selection in humans and flies
-
H.Y. Hu, Z. Yan, Y. Xu, H. Hu, C. Menzel, Y.H. Zhou, W. Chen, and P. Khaitovich Sequence features associated with microRNA strand selection in humans and flies BMC Genomics 10 2009 413
-
(2009)
BMC Genomics
, vol.10
, pp. 413
-
-
Hu, H.Y.1
Yan, Z.2
Xu, Y.3
Hu, H.4
Menzel, C.5
Zhou, Y.H.6
Chen, W.7
Khaitovich, P.8
-
51
-
-
50149095122
-
Endogenous small interfering RNAs in animals
-
K. Okamura, and E.C. Lai Endogenous small interfering RNAs in animals Nat. Rev. Mol. Cell Biol. 9 2008 673 678
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 673-678
-
-
Okamura, K.1
Lai, E.C.2
-
52
-
-
38349081145
-
Argonaute loading improves the 5′ precision of both MicroRNAs and their miRNA (*) strands in flies
-
H. Seitz, M. Ghildiyal, and P.D. Zamore Argonaute loading improves the 5′ precision of both MicroRNAs and their miRNA (*) strands in flies Curr. Biol. 18 2008 147 151
-
(2008)
Curr. Biol.
, vol.18
, pp. 147-151
-
-
Seitz, H.1
Ghildiyal, M.2
Zamore, P.D.3
-
53
-
-
58149375393
-
The bifunctional microRNA miR-9/miR-9 (*) regulates REST and CoREST and is downregulated in Huntington's disease
-
A.N. Packer, Y. Xing, S.Q. Harper, L. Jones, and B.L. Davidson The bifunctional microRNA miR-9/miR-9 (*) regulates REST and CoREST and is downregulated in Huntington's disease J. Neurosci. 28 2008 14341 14346
-
(2008)
J. Neurosci.
, vol.28
, pp. 14341-14346
-
-
Packer, A.N.1
Xing, Y.2
Harper, S.Q.3
Jones, L.4
Davidson, B.L.5
-
54
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
-
W. Filipowicz, S.N. Bhattacharyya, and N. Sonenberg Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat. Rev. Genet. 9 2008 102 114
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
55
-
-
41649115420
-
GW182 interaction with Argonaute is essential for miRNA-mediated translational repression and mRNA decay
-
DOI 10.1038/nsmb.1405, PII NSMB1405
-
A. Eulalio, E. Huntzinger, and E. Izaurralde GW182 interaction with Argonaute is essential for miRNA-mediated translational repression and mRNA decay Nat. Struct. Mol. Biol. 15 2008 346 353 (Pubitemid 351483394)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.4
, pp. 346-353
-
-
Eulalio, A.1
Huntzinger, E.2
Izaurralde, E.3
-
56
-
-
4444368187
-
Argonaute2 is the catalytic engine of mammalian RNAi
-
DOI 10.1126/science.1102513
-
J. Liu, M.A. Carmell, F.V. Rivas, C.G. Marsden, J.M. Thomson, J.J. Song, S.M. Hammond, L. Joshua-Tor, and G.J. Hannon Argonaute2 is the catalytic engine of mammalian RNAi Science 305 2004 1437 1441 (Pubitemid 39167657)
-
(2004)
Science
, vol.305
, Issue.5689
, pp. 1437-1441
-
-
Liu, J.1
Carmell, M.A.2
Rivas, F.V.3
Marsden, C.G.4
Thomson, J.M.5
Song, J.-J.6
Hammond, S.M.7
Joshua-Tor, L.8
Hannon, G.J.9
-
57
-
-
3242736704
-
Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs
-
DOI 10.1016/j.molcel.2004.07.007, PII S1097276504004150
-
G. Meister, M. Landthaler, A. Patkaniowska, Y. Dorsett, G. Teng, and T. Tuschl Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs Mol. Cell 15 2004 185 197 (Pubitemid 38950966)
-
(2004)
Molecular Cell
, vol.15
, Issue.2
, pp. 185-197
-
-
Meister, G.1
Landthaler, M.2
Patkaniowska, A.3
Dorsett, Y.4
Teng, G.5
Tuschl, T.6
-
58
-
-
78650006103
-
MicroRNA in chronic lymphocytic leukemia: Transitioning from laboratory-based investigation to clinical application
-
S.P. Nana-Sinkam, and C.M. Croce MicroRNA in chronic lymphocytic leukemia: transitioning from laboratory-based investigation to clinical application Cancer Genet. Cytogenet. 203 2010 127 133
-
(2010)
Cancer Genet. Cytogenet.
, vol.203
, pp. 127-133
-
-
Nana-Sinkam, S.P.1
Croce, C.M.2
-
60
-
-
77951964981
-
Posttranscriptional regulation of microRNA biogenesis in animals
-
H. Siomi, and M.C. Siomi Posttranscriptional regulation of microRNA biogenesis in animals Mol. Cell 38 2010 323 332
-
(2010)
Mol. Cell
, vol.38
, pp. 323-332
-
-
Siomi, H.1
Siomi, M.C.2
-
61
-
-
33845755467
-
Illuminating the silence: Understanding the structure and function of small RNAs
-
DOI 10.1038/nrm2085, PII NRM2085
-
T.M. Rana Illuminating the silence: understanding the structure and function of small RNAs Nat. Rev. Mol. Cell Biol. 8 2007 23 36 (Pubitemid 46012012)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.1
, pp. 23-36
-
-
Rana, T.M.1
-
62
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
D.P. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 2004 281 297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
63
-
-
0035887005
-
Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
-
DOI 10.1101/gad.927801
-
R.F. Ketting, S.E. Fischer, E. Bernstein, T. Sijen, G.J. Hannon, and R.H. Plasterk Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans Genes Dev. 15 2001 2654 2659 (Pubitemid 32988876)
-
(2001)
Genes and Development
, vol.15
, Issue.20
, pp. 2654-2659
-
-
Ketting, R.F.1
Fischer, S.E.J.2
Bernstein, E.3
Sijen, T.4
Hannon, G.J.5
Plasterk, R.H.A.6
-
64
-
-
0035929322
-
A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans
-
DOI 10.1126/science.1062039
-
S.W. Knight, and B.L. Bass A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans Science 293 2001 2269 2271 (Pubitemid 32900239)
-
(2001)
Science
, vol.293
, Issue.5538
, pp. 2269-2271
-
-
Knight, S.W.1
Bass, B.L.2
-
65
-
-
33846527241
-
Distinct populations of primary and secondary effectors during RNAi in C. elegans
-
DOI 10.1126/science.1132839
-
J. Pak, and A. Fire Distinct populations of primary and secondary effectors during RNAi in C. elegans Science 315 2007 241 244 (Pubitemid 46166369)
-
(2007)
Science
, vol.315
, Issue.5809
, pp. 241-244
-
-
Pak, J.1
Fire, A.2
-
66
-
-
33846524902
-
Secondary siRNAs result from unprimed RNA synthesis and form a distinct class
-
DOI 10.1126/science.1136699
-
T. Sijen, F.A. Steiner, K.L. Thijssen, and R.H. Plasterk Secondary siRNAs result from unprimed RNA synthesis and form a distinct class Science 315 2007 244 247 (Pubitemid 46166370)
-
(2007)
Science
, vol.315
, Issue.5809
, pp. 244-247
-
-
Sijen, T.1
Steiner, F.A.2
Thijssen, K.L.3
Plasterk, R.H.A.4
-
67
-
-
77957153139
-
Small RNAs are on the move
-
D.H. Chitwood, and M.C. Timmermans Small RNAs are on the move Nature 467 2010 415 419
-
(2010)
Nature
, vol.467
, pp. 415-419
-
-
Chitwood, D.H.1
Timmermans, M.C.2
-
68
-
-
78049263858
-
MiRNAs in the biogenesis of trans-acting siRNAs in higher plants
-
E. Allen, and M.D. Howell miRNAs in the biogenesis of trans-acting siRNAs in higher plants Semin. Cell Dev. Biol. 21 2010 798 804
-
(2010)
Semin. Cell Dev. Biol.
, vol.21
, pp. 798-804
-
-
Allen, E.1
Howell, M.D.2
-
69
-
-
78650306521
-
Small RNA sorting: Matchmaking for Argonautes
-
B. Czech, and G.J. Hannon Small RNA sorting: matchmaking for Argonautes Nat. Rev. Genet. 12 2011 19 31
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 19-31
-
-
Czech, B.1
Hannon, G.J.2
-
71
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
DOI 10.1038/35057062
-
E.S. Lander, L.M. Linton, B. Birren, C. Nusbaum, M.C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. FitzHugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. LeVine, P. McEwan, K. McKernan, J. Meldrim, J.P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subramanian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. McMurray, L. Matthews, S. Mercer, S. Milne, J.C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R.H. Waterston, R.K. Wilson, L.W. Hillier, J.D. McPherson, M.A. Marra, E.R. Mardis, L.A. Fulton, A.T. Chinwalla, K.H. Pepin, W.R. Gish, S.L. Chissoe, M.C. Wendl, K.D. Delehaunty, T.L. Miner, A. Delehaunty, J.B. Kramer, L.L. Cook, R.S. Fulton, D.L. Johnson, P.J. Minx, S.W. Clifton, T. Hawkins, E. Branscomb, P. Predki, P. Richardson, S. Wenning, T. Slezak, N. Doggett, J.F. Cheng, A. Olsen, S. Lucas, C. Elkin, E. Uberbacher, M. Frazier, R.A. Gibbs, D.M. Muzny, S.E. Scherer, J.B. Bouck, E.J. Sodergren, K.C. Worley, C.M. Rives, J.H. Gorrell, M.L. Metzker, S.L. Naylor, R.S. Kucherlapati, D.L. Nelson, G.M. Weinstock, Y. Sakaki, A. Fujiyama, M. Hattori, T. Yada, A. Toyoda, T. Itoh, C. Kawagoe, H. Watanabe, Y. Totoki, T. Taylor, J. Weissenbach, R. Heilig, W. Saurin, F. Artiguenave, P. Brottier, T. Bruls, E. Pelletier, C. Robert, P. Wincker, D.R. Smith, L. Doucette-Stamm, M. Rubenfield, K. Weinstock, H.M. Lee, J. Dubois, A. Rosenthal, M. Platzer, G. Nyakatura, S. Taudien, A. Rump, H. Yang, J. Yu, J. Wang, G. Huang, J. Gu, L. Hood, L. Rowen, A. Madan, S. Qin, R.W. Davis, N.A. Federspiel, A.P. Abola, M.J. Proctor, R.M. Myers, J. Schmutz, M. Dickson, J. Grimwood, D.R. Cox, M.V. Olson, R. Kaul, C. Raymond, N. Shimizu, K. Kawasaki, S. Minoshima, G.A. Evans, M. Athanasiou, R. Schultz, B.A. Roe, F. Chen, H. Pan, J. Ramser, H. Lehrach, R. Reinhardt, W.R. McCombie, M. de la Bastide, N. Dedhia, H. Blocker, K. Hornischer, G. Nordsiek, R. Agarwala, L. Aravind, J.A. Bailey, A. Bateman, S. Batzoglou, E. Birney, P. Bork, D.G. Brown, C.B. Burge, L. Cerutti, H.C. Chen, D. Church, M. Clamp, R.R. Copley, T. Doerks, S.R. Eddy, E.E. Eichler, T.S. Furey, J. Galagan, J.G. Gilbert, C. Harmon, Y. Hayashizaki, D. Haussler, H. Hermjakob, K. Hokamp, W. Jang, L.S. Johnson, T.A. Jones, S. Kasif, A. Kaspryzk, S. Kennedy, W.J. Kent, P. Kitts, E.V. Koonin, I. Korf, D. Kulp, D. Lancet, T.M. Lowe, A. McLysaght, T. Mikkelsen, J.V. Moran, N. Mulder, V.J. Pollara, C.P. Ponting, G. Schuler, J. Schultz, G. Slater, A.F. Smit, E. Stupka, J. Szustakowski, D. Thierry-Mieg, J. Thierry-Mieg, L. Wagner, J. Wallis, R. Wheeler, A. Williams, Y.I. Wolf, K.H. Wolfe, S.P. Yang, R.F. Yeh, F. Collins, M.S. Guyer, J. Peterson, A. Felsenfeld, K.A. Wetterstrand, A. Patrinos, M.J. Morgan, P. de Jong, J.J. Catanese, K. Osoegawa, H. Shizuya, S. Choi, and Y.J. Chen Initial sequencing and analysis of the human genome Nature 409 2001 860 921 (Pubitemid 32165345)
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
Levine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Lehrach, H.46
Reinhardt, R.47
McCombie, W.R.48
De La Bastide, M.49
Dedhia, N.50
Blocker, H.51
Hornischer, K.52
Nordsiek, G.53
Agarwala, R.54
Aravind, L.55
Bailey, J.A.56
Bateman, A.57
Batzoglou, S.58
Birney, E.59
Bork, P.60
Brown, D.G.61
Burge, C.B.62
Cerutti, L.63
Chen, H.-C.64
Church65
more..
-
72
-
-
70849129445
-
Retroelements and their impact on genome evolution and functioning
-
E. Gogvadze, and A. Buzdin Retroelements and their impact on genome evolution and functioning Cell Mol. Life Sci. 66 2009 3727 3742
-
(2009)
Cell Mol. Life Sci.
, vol.66
, pp. 3727-3742
-
-
Gogvadze, E.1
Buzdin, A.2
-
73
-
-
52949095077
-
Retrotransposons revisited: The restraint and rehabilitation of parasites
-
J.L. Goodier, and H.H. Kazazian Jr. Retrotransposons revisited: the restraint and rehabilitation of parasites Cell 135 2008 23 35
-
(2008)
Cell
, vol.135
, pp. 23-35
-
-
Goodier, J.L.1
Kazazian, Jr.H.H.2
-
74
-
-
78149476037
-
Small RNA-mediated quiescence of transposable elements in animals
-
K. Saito, and M.C. Siomi Small RNA-mediated quiescence of transposable elements in animals Dev. Cell 19 2010 687 697
-
(2010)
Dev. Cell
, vol.19
, pp. 687-697
-
-
Saito, K.1
Siomi, M.C.2
-
75
-
-
44349084754
-
The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
-
DOI 10.1038/nature07015, PII NATURE07015
-
K. Okamura, W.J. Chung, J.G. Ruby, H. Guo, D.P. Bartel, and E.C. Lai The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs Nature 453 2008 803 806 (Pubitemid 351793790)
-
(2008)
Nature
, vol.453
, Issue.7196
, pp. 803-806
-
-
Okamura, K.1
Chung, W.-J.2
Ruby, J.G.3
Guo, H.4
Bartel, D.P.5
Lai, E.C.6
-
76
-
-
44349104241
-
An endogenous small interfering RNA pathway in Drosophila
-
DOI 10.1038/nature07007, PII NATURE07007
-
B. Czech, C.D. Malone, R. Zhou, A. Stark, C. Schlingeheyde, M. Dus, N. Perrimon, M. Kellis, J.A. Wohlschlegel, R. Sachidanandam, G.J. Hannon, and J. Brennecke An endogenous small interfering RNA pathway in Drosophila Nature 453 2008 798 802 (Pubitemid 351793787)
-
(2008)
Nature
, vol.453
, Issue.7196
, pp. 798-802
-
-
Czech, B.1
Malone, C.D.2
Zhou, R.3
Stark, A.4
Schlingeheyde, C.5
Dus, M.6
Perrimon, N.7
Kellis, M.8
Wohlschlegel, J.A.9
Sachidanandam, R.10
Hannon, G.J.11
Brennecke, J.12
-
77
-
-
44349103084
-
Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
-
DOI 10.1038/nature06938, PII NATURE06938
-
Y. Kawamura, K. Saito, T. Kin, Y. Ono, K. Asai, T. Sunohara, T.N. Okada, M.C. Siomi, and H. Siomi Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells Nature 453 2008 793 797 (Pubitemid 351793781)
-
(2008)
Nature
, vol.453
, Issue.7196
, pp. 793-797
-
-
Kawamura, Y.1
Saito, K.2
Kin, T.3
Ono, Y.4
Asai, K.5
Sunohara, T.6
Okada, T.N.7
Siomi, M.C.8
Siomi, H.9
-
78
-
-
44449096738
-
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
-
DOI 10.1126/science.1157396
-
M. Ghildiyal, H. Seitz, M.D. Horwich, C. Li, T. Du, S. Lee, J. Xu, E.L. Kittler, M.L. Zapp, Z. Weng, and P.D. Zamore Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells Science 320 2008 1077 1081 (Pubitemid 351929549)
-
(2008)
Science
, vol.320
, Issue.5879
, pp. 1077-1081
-
-
Ghildiyal, M.1
Seitz, H.2
Horwich, M.D.3
Li, C.4
Du, T.5
Lee, S.6
Xu, J.7
Kittler, E.L.W.8
Zapp, M.L.9
Weng, Z.10
Zamore, P.D.11
-
79
-
-
22744433240
-
Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein
-
K. Forstemann, Y. Tomari, T. Du, V.V. Vagin, A.M. Denli, D.P. Bratu, C. Klattenhoff, W.E. Theurkauf, and P.D. Zamore Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein PLoS Biol. 3 2005 e236
-
(2005)
PLoS Biol.
, vol.3
, pp. 236
-
-
Forstemann, K.1
Tomari, Y.2
Du, T.3
Vagin, V.V.4
Denli, A.M.5
Bratu, D.P.6
Klattenhoff, C.7
Theurkauf, W.E.8
Zamore, P.D.9
-
80
-
-
23044462450
-
Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila
-
DOI 10.1101/gad.1334005
-
F. Jiang, X. Ye, X. Liu, L. Fincher, D. McKearin, and Q. Liu Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila Genes Dev. 19 2005 1674 1679 (Pubitemid 41058362)
-
(2005)
Genes and Development
, vol.19
, Issue.14
, pp. 1674-1679
-
-
Jiang, F.1
Ye, X.2
Liu, X.3
Fincher, L.4
McKearin, D.5
Liu, Q.6
-
81
-
-
22744454230
-
Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells
-
K. Saito, A. Ishizuka, H. Siomi, and M.C. Siomi Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells PLoS Biol. 3 2005 e235
-
(2005)
PLoS Biol.
, vol.3
, pp. 235
-
-
Saito, K.1
Ishizuka, A.2
Siomi, H.3
Siomi, M.C.4
-
82
-
-
0141868916
-
R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway
-
DOI 10.1126/science.1088710
-
Q. Liu, T.A. Rand, S. Kalidas, F. Du, H.E. Kim, D.P. Smith, and X. Wang R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway Science 301 2003 1921 1925 (Pubitemid 37221400)
-
(2003)
Science
, vol.301
, Issue.5641
, pp. 1921-1925
-
-
Liu, Q.1
Rand, T.A.2
Kalidas, S.3
Du, F.4
Kim, H.-E.5
Smith, D.P.6
Wang, X.7
-
83
-
-
8844271740
-
A protein sensor for siRNA asymmetry
-
DOI 10.1126/science.1102755
-
Y. Tomari, C. Matranga, B. Haley, N. Martinez, and P.D. Zamore A protein sensor for siRNA asymmetry Science 306 2004 1377 1380 (Pubitemid 39532515)
-
(2004)
Science
, vol.306
, Issue.5700
, pp. 1377-1380
-
-
Tomari, Y.1
Matranga, C.2
Haley, B.3
Martinez, N.4
Zamore, P.D.5
-
84
-
-
70350569212
-
Endo-siRNAs depend on a new isoform of loquacious and target artificially introduced, high-copy sequences
-
J.V. Hartig, S. Esslinger, R. Bottcher, K. Saito, and K. Forstemann Endo-siRNAs depend on a new isoform of loquacious and target artificially introduced, high-copy sequences Embo J. 28 2009 2932 2944
-
(2009)
Embo J.
, vol.28
, pp. 2932-2944
-
-
Hartig, J.V.1
Esslinger, S.2
Bottcher, R.3
Saito, K.4
Forstemann, K.5
-
85
-
-
77149173174
-
Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in Drosophila
-
K. Miyoshi, T. Miyoshi, J.V. Hartig, H. Siomi, and M.C. Siomi Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in Drosophila RNA 16 2010 506 515
-
(2010)
RNA
, vol.16
, pp. 506-515
-
-
Miyoshi, K.1
Miyoshi, T.2
Hartig, J.V.3
Siomi, H.4
Siomi, M.C.5
-
86
-
-
70349147889
-
Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform
-
R. Zhou, B. Czech, J. Brennecke, R. Sachidanandam, J.A. Wohlschlegel, N. Perrimon, and G.J. Hannon Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform RNA 15 2009 1886 1895
-
(2009)
RNA
, vol.15
, pp. 1886-1895
-
-
Zhou, R.1
Czech, B.2
Brennecke, J.3
Sachidanandam, R.4
Wohlschlegel, J.A.5
Perrimon, N.6
Hannon, G.J.7
-
87
-
-
0031657551
-
How cells respond to interferons
-
DOI 10.1146/annurev.biochem.67.1.227
-
G.R. Stark, I.M. Kerr, B.R. Williams, R.H. Silverman, and R.D. Schreiber How cells respond to interferons Annu. Rev. Biochem. 67 1998 227 264 (Pubitemid 28411130)
-
(1998)
Annual Review of Biochemistry
, vol.67
, pp. 227-264
-
-
Stark, G.R.1
Kerr, I.M.2
Williams, B.R.G.3
Silverman, R.H.4
Schreiber, R.D.5
-
88
-
-
0033789992
-
Specific interference with gene function by double-stranded RNA in early mouse development
-
F. Wianny, and M. Zernicka-Goetz Specific interference with gene function by double-stranded RNA in early mouse development Nat. Cell Biol. 2 2000 70 75
-
(2000)
Nat. Cell Biol.
, vol.2
, pp. 70-75
-
-
Wianny, F.1
Zernicka-Goetz, M.2
-
89
-
-
0034775750
-
Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells
-
DOI 10.1128/MCB.21.22.7807-7816.2001
-
S. Yang, S. Tutton, E. Pierce, and K. Yoon Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells Mol. Cell. Biol. 21 2001 7807 7816 (Pubitemid 32988789)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.22
, pp. 7807-7816
-
-
Yang, S.1
Tutton, S.2
Pierce, E.3
Yoon, K.4
-
90
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
DOI 10.1038/nature06908, PII NATURE06908
-
T. Watanabe, Y. Totoki, A. Toyoda, M. Kaneda, S. Kuramochi-Miyagawa, Y. Obata, H. Chiba, Y. Kohara, T. Kono, T. Nakano, M.A. Surani, Y. Sakaki, and H. Sasaki Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes Nature 453 2008 539 543 (Pubitemid 351733315)
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 539-543
-
-
Watanabe, T.1
Totoki, Y.2
Toyoda, A.3
Kaneda, M.4
Kuramochi-Miyagawa, S.5
Obata, Y.6
Chiba, H.7
Kohara, Y.8
Kono, T.9
Nakano, T.10
Surani, M.A.11
Sakaki, Y.12
Sasaki, H.13
-
91
-
-
54349104464
-
Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
-
J.E. Babiarz, J.G. Ruby, Y. Wang, D.P. Bartel, and R. Blelloch Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs Genes Dev. 22 2008 2773 2785
-
(2008)
Genes Dev.
, vol.22
, pp. 2773-2785
-
-
Babiarz, J.E.1
Ruby, J.G.2
Wang, Y.3
Bartel, D.P.4
Blelloch, R.5
-
92
-
-
36749013633
-
RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
-
DOI 10.1073/pnas.0709193104
-
J.M. Calabrese, A.C. Seila, G.W. Yeo, and P.A. Sharp RNA sequence analysis defines Dicer's role in mouse embryonic stem cells Proc. Natl. Acad. Sci. U.S.A. 104 2007 18097 18102 (Pubitemid 350210826)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.46
, pp. 18097-18102
-
-
Calabrese, J.M.1
Seila, A.C.2
Yeo, G.W.3
Sharp, P.A.4
-
93
-
-
33745599586
-
Identification and characterization of two novel classes of small RNAs in the mouse germline: Retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
-
DOI 10.1101/gad.1425706
-
T. Watanabe, A. Takeda, T. Tsukiyama, K. Mise, T. Okuno, H. Sasaki, N. Minami, and H. Imai Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes Genes Dev. 20 2006 1732 1743 (Pubitemid 43992882)
-
(2006)
Genes and Development
, vol.20
, Issue.13
, pp. 1732-1743
-
-
Watanabe, T.1
Takeda, A.2
Tsukiyama, T.3
Mise, K.4
Okuno, T.5
Sasaki, H.6
Minami, N.7
Imai, H.8
-
94
-
-
44349159416
-
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
-
DOI 10.1038/nature06904, PII NATURE06904
-
O.H. Tam, A.A. Aravin, P. Stein, A. Girard, E.P. Murchison, S. Cheloufi, E. Hodges, M. Anger, R. Sachidanandam, R.M. Schultz, and G.J. Hannon Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes Nature 453 2008 534 538 (Pubitemid 351733314)
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 534-538
-
-
Tam, O.H.1
Aravin, A.A.2
Stein, P.3
Girard, A.4
Murchison, E.P.5
Cheloufi, S.6
Hodges, E.7
Anger, M.8
Sachidanandam, R.9
Schultz, R.M.10
Hannon, G.J.11
-
95
-
-
34249810892
-
Argonaute Proteins: Mediators of RNA Silencing
-
DOI 10.1016/j.molcel.2007.05.001, PII S1097276507002572
-
L. Peters, and G. Meister Argonaute proteins: mediators of RNA silencing Mol. Cell 26 2007 611 623 (Pubitemid 46856239)
-
(2007)
Molecular Cell
, vol.26
, Issue.5
, pp. 611-623
-
-
Peters, L.1
Meister, G.2
-
96
-
-
77953140972
-
Argonaute proteins at a glance
-
C. Ender, and G. Meister Argonaute proteins at a glance J. Cell Sci. 123 2010 1819 1823
-
(2010)
J. Cell Sci.
, vol.123
, pp. 1819-1823
-
-
Ender, C.1
Meister, G.2
-
97
-
-
60149098474
-
Small RNAs as guardians of the genome
-
C.D. Malone, and G.J. Hannon Small RNAs as guardians of the genome Cell 136 2009 656 668
-
(2009)
Cell
, vol.136
, pp. 656-668
-
-
Malone, C.D.1
Hannon, G.J.2
-
98
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
M. Ghildiyal, and P.D. Zamore Small silencing RNAs: an expanding universe Nat. Rev. Genet. 10 2009 94 108
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
99
-
-
1942453393
-
Evidence for a piwi-Dependent RNA Silencing of the gypsy Endogenous Retrovirus by the Drosophila melanogaster flamenco Gene
-
DOI 10.1534/genetics.166.3.1313
-
E. Sarot, G. Payen-Groschene, A. Bucheton, and A. Pelisson Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene Genetics 166 2004 1313 1321 (Pubitemid 38507050)
-
(2004)
Genetics
, vol.166
, Issue.3
, pp. 1313-1321
-
-
Sarot, E.1
Payen-Groschene, G.2
Bucheton, A.3
Pelisson, A.4
-
100
-
-
32044437792
-
Telomere elongation is under the control of the RNAi-based mechanism in the Drosophila germline
-
DOI 10.1101/gad.370206
-
M. Savitsky, D. Kwon, P. Georgiev, A. Kalmykova, and V. Gvozdev Telomere elongation is under the control of the RNAi-based mechanism in the Drosophila germline Genes Dev. 20 2006 345 354 (Pubitemid 43200288)
-
(2006)
Genes and Development
, vol.20
, Issue.3
, pp. 345-354
-
-
Savitsky, M.1
Kwon, D.2
Georgiev, P.3
Kalmykova, A.4
Gvozdev, V.5
-
101
-
-
8644272306
-
Aubergine mutations in Drosophila melanogaster impair P cytotype determination by telomeric P elements inserted in heterochromatin
-
DOI 10.1007/s00438-004-1061-1
-
D. Reiss, T. Josse, D. Anxolabehere, and S. Ronsseray Aubergine mutations in Drosophila melanogaster impair P cytotype determination by telomeric P elements inserted in heterochromatin Mol. Genet. Genomics 272 2004 336 343 (Pubitemid 39506567)
-
(2004)
Molecular Genetics and Genomics
, vol.272
, Issue.3
, pp. 336-343
-
-
Reiss, D.1
Josse, T.2
Anxolabehere, D.3
Ronsseray, S.4
-
102
-
-
33746502166
-
A distinct small RNA pathway silences selfish genetic elements in the germline
-
DOI 10.1126/science.1129333
-
V.V. Vagin, A. Sigova, C. Li, H. Seitz, V. Gvozdev, and P.D. Zamore A distinct small RNA pathway silences selfish genetic elements in the germline Science 313 2006 320 324 (Pubitemid 44480950)
-
(2006)
Science
, vol.313
, Issue.5785
, pp. 320-324
-
-
Vagin, V.V.1
Sigova, A.2
Li, C.3
Seitz, H.4
Gvozdev, V.5
Zamore, P.D.6
-
103
-
-
34548784928
-
Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline
-
DOI 10.1093/nar/gkm576
-
M.S. Klenov, S.A. Lavrov, A.D. Stolyarenko, S.S. Ryazansky, A.A. Aravin, T. Tuschl, and V.A. Gvozdev Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline Nucleic Acids Res. 35 2007 5430 5438 (Pubitemid 47423917)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.16
, pp. 5430-5438
-
-
Klenov, M.S.1
Lavrov, S.A.2
Stolyarenko, A.D.3
Ryazansky, S.S.4
Aravin, A.A.5
Tuschl, T.6
Gvozdev, V.A.7
-
104
-
-
33747369856
-
Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome
-
K. Saito, K.M. Nishida, T. Mori, Y. Kawamura, K. Miyoshi, T. Nagami, H. Siomi, and M.C. Siomi Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome Genes Dev. 20 2006 2214 2222
-
(2006)
Genes Dev.
, vol.20
, pp. 2214-2222
-
-
Saito, K.1
Nishida, K.M.2
Mori, T.3
Kawamura, Y.4
Miyoshi, K.5
Nagami, T.6
Siomi, H.7
Siomi, M.C.8
-
105
-
-
33947273235
-
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
-
DOI 10.1016/j.cell.2007.01.043, PII S0092867407002577
-
J. Brennecke, A.A. Aravin, A. Stark, M. Dus, M. Kellis, R. Sachidanandam, and G.J. Hannon Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila Cell 128 2007 1089 1103 (Pubitemid 46427877)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
Kellis, M.5
Sachidanandam, R.6
Hannon, G.J.7
-
106
-
-
33947390781
-
A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila
-
DOI 10.1126/science.1140494
-
L.S. Gunawardane, K. Saito, K.M. Nishida, K. Miyoshi, Y. Kawamura, T. Nagami, H. Siomi, and M.C. Siomi A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila Science 315 2007 1587 1590 (Pubitemid 46449477)
-
(2007)
Science
, vol.315
, Issue.5818
, pp. 1587-1590
-
-
Gunawardane, L.S.1
Saito, K.2
Nishida, K.M.3
Miyoshi, K.4
Kawamura, Y.5
Nagami, T.6
Siomi, H.7
Siomi, M.C.8
-
107
-
-
0034673638
-
An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells
-
DOI 10.1038/35005107
-
S.M. Hammond, E. Bernstein, D. Beach, and G.J. Hannon An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells Nature 404 2000 293 296 (Pubitemid 30163547)
-
(2000)
Nature
, vol.404
, Issue.6775
, pp. 293-296
-
-
Hammond, S.M.1
Bernstein, E.2
Beach, D.3
Hannon, G.J.4
-
108
-
-
0034737298
-
RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
-
P.D. Zamore, T. Tuschl, P.A. Sharp, and D.P. Bartel RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals Cell 101 2000 25 33
-
(2000)
Cell
, vol.101
, pp. 25-33
-
-
Zamore, P.D.1
Tuschl, T.2
Sharp, P.A.3
Bartel, D.P.4
-
109
-
-
34248160438
-
Developmentally regulated piRNA clusters implicate MILI in transposon control
-
DOI 10.1126/science.1142612
-
A.A. Aravin, R. Sachidanandam, A. Girard, K. Fejes-Toth, and G.J. Hannon Developmentally regulated piRNA clusters implicate MILI in transposon control Science 316 2007 744 747 (Pubitemid 46717682)
-
(2007)
Science
, vol.316
, Issue.5825
, pp. 744-747
-
-
Aravin, A.A.1
Sachidanandam, R.2
Girard, A.3
Fejes-Toth, K.4
Hannon, G.J.5
-
110
-
-
52049098967
-
A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
-
A.A. Aravin, R. Sachidanandam, D. Bourc'his, C. Schaefer, D. Pezic, K.F. Toth, T. Bestor, and G.J. Hannon A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice Mol. Cell 31 2008 785 799
-
(2008)
Mol. Cell
, vol.31
, pp. 785-799
-
-
Aravin, A.A.1
Sachidanandam, R.2
Bourc'His, D.3
Schaefer, C.4
Pezic, D.5
Toth, K.F.6
Bestor, T.7
Hannon, G.J.8
-
111
-
-
57149104113
-
An epigenetic role for maternally inherited piRNAs in transposon silencing
-
DOI 10.1126/science.1165171
-
J. Brennecke, C.D. Malone, A.A. Aravin, R. Sachidanandam, A. Stark, and G.J. Hannon An epigenetic role for maternally inherited piRNAs in transposon silencing Science 322 2008 1387 1392 (Pubitemid 352775252)
-
(2008)
Science
, vol.322
, Issue.5906
, pp. 1387-1392
-
-
Brennecke, J.1
Malone, C.D.2
Aravin, A.A.3
Sachidanandam, R.4
Stark, A.5
Hannon, G.J.6
-
112
-
-
33745402414
-
A novel class of small RNAs bind to MILI protein in mouse testes
-
DOI 10.1038/nature04916, PII NATURE04916
-
A. Aravin, D. Gaidatzis, S. Pfeffer, M. Lagos-Quintana, P. Landgraf, N. Iovino, P. Morris, M.J. Brownstein, S. Kuramochi-Miyagawa, T. Nakano, M. Chien, J.J. Russo, J. Ju, R. Sheridan, C. Sander, M. Zavolan, and T. Tuschl A novel class of small RNAs bind to MILI protein in mouse testes Nature 442 2006 203 207 (Pubitemid 44086567)
-
(2006)
Nature
, vol.442
, Issue.7099
, pp. 203-207
-
-
Aravin, A.1
Gaidatzis, D.2
Pfeffer, S.3
Lagos-Quintana, M.4
Landgraf, P.5
Iovino, N.6
Morris, P.7
Brownstein, M.J.8
Kuramochi-Miyagawa, S.9
Nakano, T.10
Chien, M.11
Russo, J.J.12
Ju, J.13
Sheridan, R.14
Sander, C.15
Zavolan, M.16
Tuschl, T.17
-
113
-
-
33947731008
-
Mighty Piwis Defend the Germline against Genome Intruders
-
DOI 10.1016/j.cell.2007.03.028, PII S0092867407003960
-
K.A. O'Donnell, and J.D. Boeke Mighty Piwis defend the germline against genome intruders Cell 129 2007 37 44 (Pubitemid 46507597)
-
(2007)
Cell
, vol.129
, Issue.1
, pp. 37-44
-
-
O'Donnell, K.A.1
Boeke, J.D.2
-
114
-
-
41649116098
-
DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
-
DOI 10.1101/gad.1640708
-
S. Kuramochi-Miyagawa, T. Watanabe, K. Gotoh, Y. Totoki, A. Toyoda, M. Ikawa, N. Asada, K. Kojima, Y. Yamaguchi, T.W. Ijiri, K. Hata, E. Li, Y. Matsuda, T. Kimura, M. Okabe, Y. Sakaki, H. Sasaki, and T. Nakano DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes Genes Dev. 22 2008 908 917 (Pubitemid 351482844)
-
(2008)
Genes and Development
, vol.22
, Issue.7
, pp. 908-917
-
-
Kuramochi-Miyagawa, S.1
Watanabe, T.2
Gotoh, K.3
Totoki, Y.4
Toyoda, A.5
Ikawa, M.6
Asada, N.7
Kojima, K.8
Yamaguchi, Y.9
Ijiri, T.W.10
Hata, K.11
Li, E.12
Matsuda, Y.13
Kimura, T.14
Okabe, M.15
Sakaki, Y.16
Sasaki, H.17
Nakano, T.18
-
115
-
-
34447107760
-
The Mirtron Pathway Generates microRNA-Class Regulatory RNAs in Drosophila
-
DOI 10.1016/j.cell.2007.06.028, PII S0092867407007957
-
K. Okamura, J.W. Hagen, H. Duan, D.M. Tyler, and E.C. Lai The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila Cell 130 2007 89 100 (Pubitemid 47031325)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 89-100
-
-
Okamura, K.1
Hagen, J.W.2
Duan, H.3
Tyler, D.M.4
Lai, E.C.5
-
116
-
-
34447097693
-
Intronic microRNA precursors that bypass Drosha processing
-
DOI 10.1038/nature05983, PII NATURE05983
-
J.G. Ruby, C.H. Jan, and D.P. Bartel Intronic microRNA precursors that bypass Drosha processing Nature 448 2007 83 86 (Pubitemid 47037009)
-
(2007)
Nature
, vol.448
, Issue.7149
, pp. 83-86
-
-
Ruby, J.G.1
Jan, C.H.2
Bartel, D.P.3
-
117
-
-
35348933779
-
Mammalian Mirtron Genes
-
DOI 10.1016/j.molcel.2007.09.028, PII S1097276507006697
-
E. Berezikov, W.J. Chung, J. Willis, E. Cuppen, and E.C. Lai Mammalian mirtron genes Mol. Cell 28 2007 328 336 (Pubitemid 47600007)
-
(2007)
Molecular Cell
, vol.28
, Issue.2
, pp. 328-336
-
-
Berezikov, E.1
Chung, W.-J.2
Willis, J.3
Cuppen, E.4
Lai, E.C.5
-
118
-
-
44849106063
-
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
-
DOI 10.1101/gr.074740.107
-
E.A. Glazov, P.A. Cottee, W.C. Barris, R.J. Moore, B.P. Dalrymple, and M.L. Tizard A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach Genome Res. 18 2008 957 964 (Pubitemid 351793068)
-
(2008)
Genome Research
, vol.18
, Issue.6
, pp. 957-964
-
-
Glazov, E.A.1
Cottee, P.A.2
Barris, W.C.3
Moore, R.J.4
Dalrymple, B.P.5
Tizard, M.L.6
-
119
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
M.C. Wahl, C.L. Will, and R. Luhrmann The spliceosome: design principles of a dynamic RNP machine Cell 136 2009 701 718
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
120
-
-
77955500933
-
MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila
-
A.S. Flynt, J.C. Greimann, W.J. Chung, C.D. Lima, and E.C. Lai MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila Mol. Cell 38 2010 900 907
-
(2010)
Mol. Cell
, vol.38
, pp. 900-907
-
-
Flynt, A.S.1
Greimann, J.C.2
Chung, W.J.3
Lima, C.D.4
Lai, E.C.5
-
121
-
-
57149094023
-
SnoRNA, a novel precursor of microRNA in Giardia lamblia
-
A.A. Saraiya, and C.C. Wang snoRNA, a novel precursor of microRNA in Giardia lamblia PLoS Pathog. 4 2008 e1000224
-
(2008)
PLoS Pathog.
, vol.4
, pp. 1000224
-
-
Saraiya, A.A.1
Wang, C.C.2
-
122
-
-
79955984020
-
Identification of human miRNA precursors that resemble box C/D snoRNAs
-
M. Ono, M.S. Scott, K. Yamada, F. Avolio, G.J. Barton, and A.I. Lamond Identification of human miRNA precursors that resemble box C/D snoRNAs Nucleic Acids Res. 2011
-
(2011)
Nucleic Acids Res.
-
-
Ono, M.1
Scott, M.S.2
Yamada, K.3
Avolio, F.4
Barton, G.J.5
Lamond, A.I.6
-
123
-
-
79551499254
-
Human box C/D snoRNAs with miRNA like functions: Expanding the range of regulatory RNAs
-
M. Brameier, A. Herwig, R. Reinhardt, L. Walter, and J. Gruber Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs Nucleic Acids Res. 39 2011 675 686
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 675-686
-
-
Brameier, M.1
Herwig, A.2
Reinhardt, R.3
Walter, L.4
Gruber, J.5
-
124
-
-
67649386471
-
Small RNAs derived from snoRNAs
-
R.J. Taft, E.A. Glazov, T. Lassmann, Y. Hayashizaki, P. Carninci, and J.S. Mattick Small RNAs derived from snoRNAs RNA 15 2009 1233 1240
-
(2009)
RNA
, vol.15
, pp. 1233-1240
-
-
Taft, R.J.1
Glazov, E.A.2
Lassmann, T.3
Hayashizaki, Y.4
Carninci, P.5
Mattick, J.S.6
-
125
-
-
77955643151
-
Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification
-
J.C. Castle, C.D. Armour, M. Lower, D. Haynor, M. Biery, H. Bouzek, R. Chen, S. Jackson, J.M. Johnson, C.A. Rohl, and C.K. Raymond Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification PLoS One 5 2010 e11779
-
(2010)
PLoS One
, vol.5
, pp. 11779
-
-
Castle, J.C.1
Armour, C.D.2
Lower, M.3
Haynor, D.4
Biery, M.5
Bouzek, H.6
Chen, R.7
Jackson, S.8
Johnson, J.M.9
Rohl, C.A.10
Raymond, C.K.11
-
126
-
-
56649091439
-
A role for the Dicer helicase domain in the processing of thermodynamically unstable hairpin RNAs
-
H.S. Soifer, M. Sano, K. Sakurai, P. Chomchan, P. Saetrom, M.A. Sherman, M.A. Collingwood, M.A. Behlke, and J.J. Rossi A role for the Dicer helicase domain in the processing of thermodynamically unstable hairpin RNAs Nucleic Acids Res. 36 2008 6511 6522
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6511-6522
-
-
Soifer, H.S.1
Sano, M.2
Sakurai, K.3
Chomchan, P.4
Saetrom, P.5
Sherman, M.A.6
Collingwood, M.A.7
Behlke, M.A.8
Rossi, J.J.9
-
127
-
-
47649095102
-
Chemical modification patterns compatible with high potency dicer-substrate small interfering RNAs
-
DOI 10.1089/oli.2008.0123
-
M.A. Collingwood, S.D. Rose, L. Huang, C. Hillier, M. Amarzguioui, M.T. Wiiger, H.S. Soifer, J.J. Rossi, and M.A. Behlke Chemical modification patterns compatible with high potency dicer-substrate small interfering RNAs Oligonucleotides 18 2008 187 200 (Pubitemid 352019751)
-
(2008)
Oligonucleotides
, vol.18
, Issue.2
, pp. 187-200
-
-
Collingwood, M.A.1
Rose, S.D.2
Huang, L.3
Hillier, C.4
Amarzguioui, M.5
Wiiger, M.T.6
Soifer, H.S.7
Rossi, J.J.8
Behlke, M.A.9
-
128
-
-
33745211908
-
Conserved microRNA characteristics in mammals
-
P. Saetrom, O. Snove, M. Nedland, T.B. Grunfeld, Y. Lin, M.B. Bass, and J.R. Canon Conserved microRNA characteristics in mammals Oligonucleotides 16 2006 115 144
-
(2006)
Oligonucleotides
, vol.16
, pp. 115-144
-
-
Saetrom, P.1
Snove, O.2
Nedland, M.3
Grunfeld, T.B.4
Lin, Y.5
Bass, M.B.6
Canon, J.R.7
-
129
-
-
77953183812
-
A dicer-independent miRNA biogenesis pathway that requires Ago catalysis
-
S. Cheloufi, C.O. Dos Santos, M.M. Chong, and G.J. Hannon A dicer-independent miRNA biogenesis pathway that requires Ago catalysis Nature 465 2010 584 589
-
(2010)
Nature
, vol.465
, pp. 584-589
-
-
Cheloufi, S.1
Dos Santos, C.O.2
Chong, M.M.3
Hannon, G.J.4
-
130
-
-
77953897182
-
A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity
-
D. Cifuentes, H. Xue, D.W. Taylor, H. Patnode, Y. Mishima, S. Cheloufi, E. Ma, S. Mane, G.J. Hannon, N.D. Lawson, S.A. Wolfe, and A.J. Giraldez A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity Science 328 2010 1694 1698
-
(2010)
Science
, vol.328
, pp. 1694-1698
-
-
Cifuentes, D.1
Xue, H.2
Taylor, D.W.3
Patnode, H.4
Mishima, Y.5
Cheloufi, S.6
Ma, E.7
Mane, S.8
Hannon, G.J.9
Lawson, N.D.10
Wolfe, S.A.11
Giraldez, A.J.12
-
131
-
-
35748932681
-
Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells
-
DOI 10.1038/sj.embor.7401088, PII 7401088
-
J. Hock, L. Weinmann, C. Ender, S. Rudel, E. Kremmer, M. Raabe, H. Urlaub, and G. Meister Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells EMBO Rep. 8 2007 1052 1060 (Pubitemid 350042341)
-
(2007)
EMBO Reports
, vol.8
, Issue.11
, pp. 1052-1060
-
-
Hock, J.1
Weinmann, L.2
Ender, C.3
Rudel, S.4
Kremmer, E.5
Raabe, M.6
Urlaub, H.7
Meister, G.8
-
132
-
-
77956278708
-
Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3′ trailers
-
J.Y. Liao, L.M. Ma, Y.H. Guo, Y.C. Zhang, H. Zhou, P. Shao, Y.Q. Chen, and L.H. Qu Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3′ trailers PLoS One 5 2010 e10563
-
(2010)
PLoS One
, vol.5
, pp. 10563
-
-
Liao, J.Y.1
Ma, L.M.2
Guo, Y.H.3
Zhang, Y.C.4
Zhou, H.5
Shao, P.6
Chen, Y.Q.7
Qu, L.H.8
-
133
-
-
69049118109
-
MicroRNAs with a nucleolar location
-
J.C. Politz, E.M. Hogan, and T. Pederson MicroRNAs with a nucleolar location RNA 15 2009 1705 1715
-
(2009)
RNA
, vol.15
, pp. 1705-1715
-
-
Politz, J.C.1
Hogan, E.M.2
Pederson, T.3
-
134
-
-
44349191455
-
Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster
-
DOI 10.1038/ng.158, PII NG158
-
T. Sahoo, D. del Gaudio, J.R. German, M. Shinawi, S.U. Peters, R.E. Person, A. Garnica, S.W. Cheung, and A.L. Beaudet Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster Nat. Genet. 40 2008 719 721 (Pubitemid 351748873)
-
(2008)
Nature Genetics
, vol.40
, Issue.6
, pp. 719-721
-
-
Sahoo, T.1
Del Gaudio, D.2
German, J.R.3
Shinawi, M.4
Peters, S.U.5
Person, R.E.6
Garnica, A.7
Cheung, S.W.8
Beaudet, A.L.9
-
135
-
-
77958486211
-
Paternally inherited microdeletion at 15q11.2 confirms a significant role for the SNORD116 C/D box snoRNA cluster in Prader-Willi syndrome
-
A.L. Duker, B.C. Ballif, E.V. Bawle, R.E. Person, S. Mahadevan, S. Alliman, R. Thompson, R. Traylor, B.A. Bejjani, L.G. Shaffer, J.A. Rosenfeld, A.N. Lamb, and T. Sahoo Paternally inherited microdeletion at 15q11.2 confirms a significant role for the SNORD116 C/D box snoRNA cluster in Prader-Willi syndrome Eur. J. Hum. Genet. 18 2010 1196 1201
-
(2010)
Eur. J. Hum. Genet.
, vol.18
, pp. 1196-1201
-
-
Duker, A.L.1
Ballif, B.C.2
Bawle, E.V.3
Person, R.E.4
Mahadevan, S.5
Alliman, S.6
Thompson, R.7
Traylor, R.8
Bejjani, B.A.9
Shaffer, L.G.10
Rosenfeld, J.A.11
Lamb, A.N.12
Sahoo, T.13
-
136
-
-
68749097161
-
A deletion of the HBII-85 class of small nucleolar RNAs (snoRNAs) is associated with hyperphagia, obesity and hypogonadism
-
A.J. de Smith, C. Purmann, R.G. Walters, R.J. Ellis, S.E. Holder, M.M. Van Haelst, A.F. Brady, U.L. Fairbrother, M. Dattani, J.M. Keogh, E. Henning, G.S. Yeo, S. O'Rahilly, P. Froguel, I.S. Farooqi, and A.I. Blakemore A deletion of the HBII-85 class of small nucleolar RNAs (snoRNAs) is associated with hyperphagia, obesity and hypogonadism Hum. Mol. Genet. 18 2009 3257 3265
-
(2009)
Hum. Mol. Genet.
, vol.18
, pp. 3257-3265
-
-
De Smith, A.J.1
Purmann, C.2
Walters, R.G.3
Ellis, R.J.4
Holder, S.E.5
Van Haelst, M.M.6
Brady, A.F.7
Fairbrother, U.L.8
Dattani, M.9
Keogh, J.M.10
Henning, E.11
Yeo, G.S.12
O'Rahilly, S.13
Froguel, P.14
Farooqi, I.S.15
Blakemore, A.I.16
-
137
-
-
71549169628
-
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
-
C. Cole, A. Sobala, C. Lu, S.R. Thatcher, A. Bowman, J.W. Brown, P.J. Green, G.J. Barton, and G. Hutvagner Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs RNA 15 2009 2147 2160
-
(2009)
RNA
, vol.15
, pp. 2147-2160
-
-
Cole, C.1
Sobala, A.2
Lu, C.3
Thatcher, S.R.4
Bowman, A.5
Brown, J.W.6
Green, P.J.7
Barton, G.J.8
Hutvagner, G.9
-
138
-
-
72749089855
-
A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
-
Y.S. Lee, Y. Shibata, A. Malhotra, and A. Dutta A novel class of small RNAs: tRNA-derived RNA fragments (tRFs) Genes Dev. 23 2009 2639 2649
-
(2009)
Genes Dev.
, vol.23
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
139
-
-
42949132235
-
Hidden layers of human small RNAs
-
H. Kawaji, M. Nakamura, Y. Takahashi, A. Sandelin, S. Katayama, S. Fukuda, C.O. Daub, C. Kai, J. Kawai, J. Yasuda, P. Carninci, and Y. Hayashizaki Hidden layers of human small RNAs BMC Genomics 9 2008 157
-
(2008)
BMC Genomics
, vol.9
, pp. 157
-
-
Kawaji, H.1
Nakamura, M.2
Takahashi, Y.3
Sandelin, A.4
Katayama, S.5
Fukuda, S.6
Daub, C.O.7
Kai, C.8
Kawai, J.9
Yasuda, J.10
Carninci, P.11
Hayashizaki, Y.12
-
140
-
-
77950202393
-
Human tRNA-derived small RNAs in the global regulation of RNA silencing
-
D. Haussecker, Y. Huang, A. Lau, P. Parameswaran, A.Z. Fire, and M.A. Kay Human tRNA-derived small RNAs in the global regulation of RNA silencing RNA 16 2010 673 695
-
(2010)
RNA
, vol.16
, pp. 673-695
-
-
Haussecker, D.1
Huang, Y.2
Lau, A.3
Parameswaran, P.4
Fire, A.Z.5
Kay, M.A.6
-
141
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
DOI 10.1038/nature03702
-
J. Lu, G. Getz, E.A. Miska, E. Alvarez-Saavedra, J. Lamb, D. Peck, A. Sweet-Cordero, B.L. Ebert, R.H. Mak, A.A. Ferrando, J.R. Downing, T. Jacks, H.R. Horvitz, and T.R. Golub MicroRNA expression profiles classify human cancers Nature 435 2005 834 838 (Pubitemid 40839735)
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
Alvarez-Saavedra, E.4
Lamb, J.5
Peck, D.6
Sweet-Cordero, A.7
Ebert, B.L.8
Mak, R.H.9
Ferrando, A.A.10
Downing, J.R.11
Jacks, T.12
Horvitz, H.R.13
Golub, T.R.14
-
142
-
-
56749170666
-
Non-coding RNA production by RNA polymerase III is implicated in cancer
-
L. Marshall, and R.J. White Non-coding RNA production by RNA polymerase III is implicated in cancer Nat. Rev. Cancer 8 2008 911 914
-
(2008)
Nat. Rev. Cancer
, vol.8
, pp. 911-914
-
-
Marshall, L.1
White, R.J.2
-
143
-
-
58849163116
-
DGCR8-dependent microRNA biogenesis is essential for skin development
-
R. Yi, H.A. Pasolli, M. Landthaler, M. Hafner, T. Ojo, R. Sheridan, C. Sander, D. O'Carroll, M. Stoffel, T. Tuschl, and E. Fuchs DGCR8-dependent microRNA biogenesis is essential for skin development Proc. Natl. Acad. Sci. U.S.A. 106 2009 498 502
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 498-502
-
-
Yi, R.1
Pasolli, H.A.2
Landthaler, M.3
Hafner, M.4
Ojo, T.5
Sheridan, R.6
Sander, C.7
O'Carroll, D.8
Stoffel, M.9
Tuschl, T.10
Fuchs, E.11
-
144
-
-
70349652191
-
The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs
-
H. Persson, A. Kvist, J. Vallon-Christersson, P. Medstrand, A. Borg, and C. Rovira The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs Nat. Cell Biol. 11 2009 1268 1271
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 1268-1271
-
-
Persson, H.1
Kvist, A.2
Vallon-Christersson, J.3
Medstrand, P.4
Borg, A.5
Rovira, C.6
-
145
-
-
59649103076
-
A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate
-
W. Shi, D. Hendrix, M. Levine, and B. Haley A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate Nat. Struct. Mol. Biol. 16 2009 183 189
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 183-189
-
-
Shi, W.1
Hendrix, D.2
Levine, M.3
Haley, B.4
-
146
-
-
38149071979
-
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
-
DOI 10.1101/gr.6597907
-
J.G. Ruby, A. Stark, W.K. Johnston, M. Kellis, D.P. Bartel, and E.C. Lai Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs Genome Res. 17 2007 1850 1864 (Pubitemid 351360008)
-
(2007)
Genome Research
, vol.17
, Issue.12
, pp. 1850-1864
-
-
Ruby, J.G.1
Stark, A.2
Johnston, W.K.3
Kellis, M.4
Bartel, D.P.5
Lai, E.C.6
-
147
-
-
69849100181
-
Evidence for human microRNA-offset RNAs in small RNA sequencing data
-
D. Langenberger, C. Bermudez-Santana, J. Hertel, S. Hoffmann, P. Khaitovich, and P.F. Stadler Evidence for human microRNA-offset RNAs in small RNA sequencing data Bioinformatics 25 2009 2298 2301
-
(2009)
Bioinformatics
, vol.25
, pp. 2298-2301
-
-
Langenberger, D.1
Bermudez-Santana, C.2
Hertel, J.3
Hoffmann, S.4
Khaitovich, P.5
Stadler, P.F.6
-
148
-
-
66149084316
-
QiRNA is a new type of small interfering RNA induced by DNA damage
-
H.C. Lee, S.S. Chang, S. Choudhary, A.P. Aalto, M. Maiti, D.H. Bamford, and Y. Liu qiRNA is a new type of small interfering RNA induced by DNA damage Nature 459 2009 274 277
-
(2009)
Nature
, vol.459
, pp. 274-277
-
-
Lee, H.C.1
Chang, S.S.2
Choudhary, S.3
Aalto, A.P.4
Maiti, M.5
Bamford, D.H.6
Liu, Y.7
|