-
1
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
Cheng, J. et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308, 1149-1154 (2005).
-
(2005)
Science
, vol.308
, pp. 1149-1154
-
-
Cheng, J.1
-
3
-
-
17644396621
-
Noncoding RNAs: Hope or hype?
-
Huttenhofer, A., Schattner, P. & Polacek, N. Noncoding RNAs: hope or hype? Trends Genet. 21, 289-297 (2005).
-
(2005)
Trends Genet
, vol.21
, pp. 289-297
-
-
Huttenhofer, A.1
Schattner, P.2
Polacek, N.3
-
4
-
-
20644449571
-
An abundance of RNA regulators
-
Storz, G., Altuvia, S. & Wassarman, K. M. An abundance of RNA regulators. Annu. Rev. Biochem. 74, 199-217 (2005).
-
(2005)
Annu. Rev. Biochem
, vol.74
, pp. 199-217
-
-
Storz, G.1
Altuvia, S.2
Wassarman, K.M.3
-
5
-
-
0042888744
-
Noncoding RNA transcripts
-
Szymanski, M., Barciszewska, M. Z., Zywicki, M. & Barciszewski, J. Noncoding RNA transcripts. J. Appl. Genet. 44, 1-19 (2003).
-
(2003)
J. Appl. Genet
, vol.44
, pp. 1-19
-
-
Szymanski, M.1
Barciszewska, M.Z.2
Zywicki, M.3
Barciszewski, J.4
-
6
-
-
0037133945
-
-
Eddy, S. R. Computational genomics of noncoding RNA genes. Cell 109, 137-140 (2002).
-
Eddy, S. R. Computational genomics of noncoding RNA genes. Cell 109, 137-140 (2002).
-
-
-
-
7
-
-
33748303049
-
Non-coding-RNA regulators of RNA polymerase II transcription
-
Goodrich, J. A. & Kugel, J. F. Non-coding-RNA regulators of RNA polymerase II transcription. Nature Rev. Mol. Cell Biol. 7, 612-616 (2006).
-
(2006)
Nature Rev. Mol. Cell Biol
, vol.7
, pp. 612-616
-
-
Goodrich, J.A.1
Kugel, J.F.2
-
8
-
-
33646883455
-
The principles of guiding by RNA: Chimeric RNA-protein enzymes
-
Huttenhofer, A. & Schattner, P. The principles of guiding by RNA: chimeric RNA-protein enzymes. Nature Rev. Genet. 7, 475-482 (2006).
-
(2006)
Nature Rev. Genet
, vol.7
, pp. 475-482
-
-
Huttenhofer, A.1
Schattner, P.2
-
9
-
-
27744541450
-
-
Valadkhan, S. snRNAs as the catalysts of pre-mRNA splicing. Curr. Opin. Chem. Biol. 9, 603-608 (2005).
-
Valadkhan, S. snRNAs as the catalysts of pre-mRNA splicing. Curr. Opin. Chem. Biol. 9, 603-608 (2005).
-
-
-
-
10
-
-
33645213731
-
-
3rd edn eds Gesteland, R. F, Cech, T. R. & Atkins, A. J, Cold Spring Harbor Laboratory Press, Cold Spring Harbor
-
Will, C. L. & Luhrmann, R. in The RNA World 3rd edn (eds Gesteland, R. F., Cech, T. R. & Atkins, A. J.) 369-400 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, 2006).
-
(2006)
The RNA World
, pp. 369-400
-
-
Will, C.L.1
Luhrmann, R.2
-
11
-
-
0344198459
-
The spliceosome: The most complex macromolecular machine in the cell?
-
Nilsen, T. W. The spliceosome: the most complex macromolecular machine in the cell? Bioessays 25, 1147-1149 (2003).
-
(2003)
Bioessays
, vol.25
, pp. 1147-1149
-
-
Nilsen, T.W.1
-
12
-
-
0035920155
-
-
Hernandez, N. Small nuclear RNA genes: a model system to study fundamental mechanisms of transcription. J. Biol. Chem. 276, 26733-26736 (2001).
-
Hernandez, N. Small nuclear RNA genes: a model system to study fundamental mechanisms of transcription. J. Biol. Chem. 276, 26733-26736 (2001).
-
-
-
-
13
-
-
0022975147
-
Formation of the 3′ end of U1 snRNA requires compatible snRNA promoter elements
-
Hernandez, N. & Weiner, A. M. Formation of the 3′ end of U1 snRNA requires compatible snRNA promoter elements. Cell 47, 249-258 (1986).
-
(1986)
Cell
, vol.47
, pp. 249-258
-
-
Hernandez, N.1
Weiner, A.M.2
-
14
-
-
0022969698
-
3′ end formation of U1 snRNA precursors is coupled to transcription from snRNA promoters
-
de Vegvar, H. E., Lund, E. & Dahlberg, J. E. 3′ end formation of U1 snRNA precursors is coupled to transcription from snRNA promoters. Cell 47, 259-266 (1986).
-
(1986)
Cell
, vol.47
, pp. 259-266
-
-
de Vegvar, H.E.1
Lund, E.2
Dahlberg, J.E.3
-
15
-
-
26844493853
-
-
Baillat, D. et al. Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II. Cell 123, 265-276 (2005). These authors purified a long-sought complex required for 3′-end processing of pre-snRNA transcripts.
-
Baillat, D. et al. Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II. Cell 123, 265-276 (2005). These authors purified a long-sought complex required for 3′-end processing of pre-snRNA transcripts.
-
-
-
-
16
-
-
26244452759
-
The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing
-
Dominski, Z., Yang, X. C. & Marzluff, W. F. The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing. Cell 123, 37-48 (2005).
-
(2005)
Cell
, vol.123
, pp. 37-48
-
-
Dominski, Z.1
Yang, X.C.2
Marzluff, W.F.3
-
17
-
-
26944459450
-
-
Kolev, N. G. & Steitz, J. A. Symplekin and multiple other polyadenylation factors participate in 3′-end maturation of histone mRNAs. Genes Dev. 19, 2583-2592 (2005). Together with reference 16, showed that core factors involved in mRNA polyadenylation form distinct complexes that are required for proper histone 3′-end maturation.
-
Kolev, N. G. & Steitz, J. A. Symplekin and multiple other polyadenylation factors participate in 3′-end maturation of histone mRNAs. Genes Dev. 19, 2583-2592 (2005). Together with reference 16, showed that core factors involved in mRNA polyadenylation form distinct complexes that are required for proper histone 3′-end maturation.
-
-
-
-
18
-
-
0035921929
-
-
Steinmetz, E. J., Conrad, N. K., Brow, D. A. & Corden, J. L. RNA-binding protein Nrd1 directs poly(A)-independent 3′-end formation of RNA polymerase II transcripts. Nature 413, 327-331 (2001). The first paper to recognize the role of Nrd1 in preventing read-through transcription of nonpolyadenylated snRNA and snoRNA genes in yeast.
-
Steinmetz, E. J., Conrad, N. K., Brow, D. A. & Corden, J. L. RNA-binding protein Nrd1 directs poly(A)-independent 3′-end formation of RNA polymerase II transcripts. Nature 413, 327-331 (2001). The first paper to recognize the role of Nrd1 in preventing read-through transcription of nonpolyadenylated snRNA and snoRNA genes in yeast.
-
-
-
-
19
-
-
3042796191
-
Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts
-
Carroll, K. L., Pradhan, D. A., Granek, J. A., Clarke, N. D. & Corden, J. L. Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts. Mol. Cell. Biol. 24, 6241-6252 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 6241-6252
-
-
Carroll, K.L.1
Pradhan, D.A.2
Granek, J.A.3
Clarke, N.D.4
Corden, J.L.5
-
20
-
-
33645226793
-
cis- and trans-acting determinants of transcription termination by yeast RNA polymerase II
-
Steinmetz, E. J., Ng, S. B., Cloute, J. P. & Brow, D. A. cis- and trans-acting determinants of transcription termination by yeast RNA polymerase II. Mol. Cell. Biol. 26, 2688-2696 (2006).
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 2688-2696
-
-
Steinmetz, E.J.1
Ng, S.B.2
Cloute, J.P.3
Brow, D.A.4
-
21
-
-
26944479278
-
A requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3′ end formation
-
Sheldon, K. E., Mauger, D. M. & Arndt, K. M. A requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3′ end formation. Mol. Cell 20, 225-236 (2005).
-
(2005)
Mol. Cell
, vol.20
, pp. 225-236
-
-
Sheldon, K.E.1
Mauger, D.M.2
Arndt, K.M.3
-
22
-
-
33748435751
-
Transcription termination and nuclear degradation of cryptic unstable transcripts: A role for the Nrd1-Nab3 pathway in genome surveillance
-
Thiebaut, M., Kisseleva-Romanova, E., Rougemaille, M., Boulay, J. & Libri, D. Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the Nrd1-Nab3 pathway in genome surveillance. Mol. Cell 23, 853-864 (2006).
-
(2006)
Mol. Cell
, vol.23
, pp. 853-864
-
-
Thiebaut, M.1
Kisseleva-Romanova, E.2
Rougemaille, M.3
Boulay, J.4
Libri, D.5
-
23
-
-
33748424364
-
Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3
-
Arigo, J. T., Eyler, D. E., Carroll, K. L. & Corden, J. L. Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol. Cell 23, 841-851 (2006).
-
(2006)
Mol. Cell
, vol.23
, pp. 841-851
-
-
Arigo, J.T.1
Eyler, D.E.2
Carroll, K.L.3
Corden, J.L.4
-
24
-
-
0037108150
-
Recruitment of RNA polymerase III to its target promoters
-
Schramm, L. & Hernandez, N. Recruitment of RNA polymerase III to its target promoters. Genes Dev. 16, 2593-2620 (2002).
-
(2002)
Genes Dev
, vol.16
, pp. 2593-2620
-
-
Schramm, L.1
Hernandez, N.2
-
25
-
-
0034646512
-
PHAX, a mediator of U snRNA nuclear export whose activity is regulated by phosphorylation
-
Ohno, M., Segref, A., Bachi, A., Wilm, M. & Mattaj, I. W. PHAX, a mediator of U snRNA nuclear export whose activity is regulated by phosphorylation. Cell 101, 187-198 (2000).
-
(2000)
Cell
, vol.101
, pp. 187-198
-
-
Ohno, M.1
Segref, A.2
Bachi, A.3
Wilm, M.4
Mattaj, I.W.5
-
26
-
-
0035028878
-
The evolutionarily conserved region of the U snRNA export mediator PHAX is a novel RNA-binding domain that is essential for U snRNA export
-
Segref, A., Mattaj, I. W. & Ohno, M. The evolutionarily conserved region of the U snRNA export mediator PHAX is a novel RNA-binding domain that is essential for U snRNA export. RNA 7, 351-360 (2001).
-
(2001)
RNA
, vol.7
, pp. 351-360
-
-
Segref, A.1
Mattaj, I.W.2
Ohno, M.3
-
27
-
-
0036211993
-
Identity elements used in export of mRNAs
-
Ohno, M., Segref, A., Kuersten, S. & Mattaj, I. W. Identity elements used in export of mRNAs. Mol. Cell 9, 659-671 (2002).
-
(2002)
Mol. Cell
, vol.9
, pp. 659-671
-
-
Ohno, M.1
Segref, A.2
Kuersten, S.3
Mattaj, I.W.4
-
28
-
-
4444373245
-
RNA length defines RNA export pathway
-
Masuyama, K., Taniguchi, I., Kataoka, N. & Ohno, M. RNA length defines RNA export pathway. Genes Dev. 18, 2074-2085 (2004).
-
(2004)
Genes Dev
, vol.18
, pp. 2074-2085
-
-
Masuyama, K.1
Taniguchi, I.2
Kataoka, N.3
Ohno, M.4
-
29
-
-
0028179047
-
Retention and 5′ cap trimethylation of U3 snRNA in the nucleus
-
Terns, M. P. & Dahlberg, J. E. Retention and 5′ cap trimethylation of U3 snRNA in the nucleus. Science 264, 959-961 (1994).
-
(1994)
Science
, vol.264
, pp. 959-961
-
-
Terns, M.P.1
Dahlberg, J.E.2
-
30
-
-
9744222918
-
PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli
-
Boulon, S. et al. PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli. Mol. Cell 16, 777-787 (2004).
-
(2004)
Mol. Cell
, vol.16
, pp. 777-787
-
-
Boulon, S.1
-
31
-
-
9744222917
-
Assembly and maturation of the U3 snoRNP in the nucleoplasm in a large dynamic multiprotein complex
-
Watkins, N. J. et al. Assembly and maturation of the U3 snoRNP in the nucleoplasm in a large dynamic multiprotein complex. Mol. Cell 16, 789-798 (2004).
-
(2004)
Mol. Cell
, vol.16
, pp. 789-798
-
-
Watkins, N.J.1
-
32
-
-
0029098641
-
A common maturation pathway for small nucleolar RNAs
-
Terns, M. P., Grimm, C., Lund, E. & Dahlberg, J. E. A common maturation pathway for small nucleolar RNAs. EMBO J. 14, 4860-4871 (1995).
-
(1995)
EMBO J
, vol.14
, pp. 4860-4871
-
-
Terns, M.P.1
Grimm, C.2
Lund, E.3
Dahlberg, J.E.4
-
33
-
-
0033500155
-
Nuclear retention elements of U3 small nucleolar RNA
-
Speckmann, W., Narayanan, A., Terns, R. & Terns, M. P. Nuclear retention elements of U3 small nucleolar RNA. Mol. Cell. Biol. 19, 8412-8421 (1999).
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 8412-8421
-
-
Speckmann, W.1
Narayanan, A.2
Terns, R.3
Terns, M.P.4
-
34
-
-
0034493601
-
Interactions of U2 gene loci and their nuclear transcripts with Cajal (coiled) bodies: Evidence for PreU2 within Cajal bodies
-
Smith, K. P. & Lawrence, J. B. Interactions of U2 gene loci and their nuclear transcripts with Cajal (coiled) bodies: evidence for PreU2 within Cajal bodies. Mol. Biol. Cell 11, 2987-2998 (2000).
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 2987-2998
-
-
Smith, K.P.1
Lawrence, J.B.2
-
35
-
-
33644927702
-
Pumping RNA: Nuclear bodybuilding along the RNP pipeline
-
Matera, A. G. & Shpargel, K. B. Pumping RNA: nuclear bodybuilding along the RNP pipeline. Curr. Opin. Cell Biol. 18, 317-324 (2006).
-
(2006)
Curr. Opin. Cell Biol
, vol.18
, pp. 317-324
-
-
Matera, A.G.1
Shpargel, K.B.2
-
36
-
-
0035975962
-
Macromolecular complexes: SMN - the master assembler
-
Terns, M. P. & Terns, R. M. Macromolecular complexes: SMN - the master assembler. Curr. Biol. 11, R862-R864 (2001).
-
(2001)
Curr. Biol
, vol.11
-
-
Terns, M.P.1
Terns, R.M.2
-
37
-
-
33644990213
-
Spinal muscular atrophy: The RNP connection
-
Eggert, C., Chari, A., Laggerbauer, B. & Fischer, U. Spinal muscular atrophy: the RNP connection. Trends Mol. Med. 12, 113-121 (2006).
-
(2006)
Trends Mol. Med
, vol.12
, pp. 113-121
-
-
Eggert, C.1
Chari, A.2
Laggerbauer, B.3
Fischer, U.4
-
38
-
-
28544439056
-
Specific sequence features, recognized by the SMN complex, identify snRNAs and determine their fate as snRNPs
-
Golembe, T. J., Yong, J. & Dreyfuss, G. Specific sequence features, recognized by the SMN complex, identify snRNAs and determine their fate as snRNPs. Mol. Cell. Biol. 25, 10989-11004 (2005).
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 10989-11004
-
-
Golembe, T.J.1
Yong, J.2
Dreyfuss, G.3
-
39
-
-
33745951912
-
The Gemin5 protein of the SMN complex identifies snRNAs
-
Battle, D. J. et al. The Gemin5 protein of the SMN complex identifies snRNAs. Mol. Cell 23, 273-279 (2006).
-
(2006)
Mol. Cell
, vol.23
, pp. 273-279
-
-
Battle, D.J.1
-
40
-
-
0141818102
-
-
Pillai, R. S. et al. Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. Genes Dev. 17, 2321-2333 (2003). Showed that LSM11 replaces SmD2 in the U7 core and demonstrated the existence of a distinct pool of SMN complexes that lack the canonical SmD1 and SmD2, but that contain LSM10 and LSM11.
-
Pillai, R. S. et al. Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. Genes Dev. 17, 2321-2333 (2003). Showed that LSM11 replaces SmD2 in the U7 core and demonstrated the existence of a distinct pool of SMN complexes that lack the canonical SmD1 and SmD2, but that contain LSM10 and LSM11.
-
-
-
-
41
-
-
0036238278
-
-
Mouaikel, J., Verheggen, C., Bertrand, E., Tazi, J. & Bordonne, R. Hypermethylation of the cap structure of both yeast snRNAs and snoRNAs requires a conserved methyltransferase that is localized to the nucleolus. Mol. Cell 9, 891-901 (2002). Identified the 5′-cap hypermethylase Tgs1, the activity of which was later shown to be essential in metazoans.
-
Mouaikel, J., Verheggen, C., Bertrand, E., Tazi, J. & Bordonne, R. Hypermethylation of the cap structure of both yeast snRNAs and snoRNAs requires a conserved methyltransferase that is localized to the nucleolus. Mol. Cell 9, 891-901 (2002). Identified the 5′-cap hypermethylase Tgs1, the activity of which was later shown to be essential in metazoans.
-
-
-
-
42
-
-
0033557135
-
A human U2 RNA mutant stalled in 3′ end processing is impaired in nuclear import
-
Huang, Q. & Pederson, T. A human U2 RNA mutant stalled in 3′ end processing is impaired in nuclear import. Nucleic Acids Res. 27, 1025-1031 (1999).
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1025-1031
-
-
Huang, Q.1
Pederson, T.2
-
43
-
-
0030775693
-
Nuclear import of U snRNPs requires importin β
-
Palacios, I., Hetzer, M., Adam, S. A. & Mattaj, I. W. Nuclear import of U snRNPs requires importin β. EMBO J. 16, 6783-6792 (1997).
-
(1997)
EMBO J
, vol.16
, pp. 6783-6792
-
-
Palacios, I.1
Hetzer, M.2
Adam, S.A.3
Mattaj, I.W.4
-
44
-
-
0032527283
-
Snurportin1, an m3G-cap-specific nuclear import receptor with a novel domain structure
-
Huber, J. et al. Snurportin1, an m3G-cap-specific nuclear import receptor with a novel domain structure. EMBO J. 17, 4114-4126 (1998).
-
(1998)
EMBO J
, vol.17
, pp. 4114-4126
-
-
Huber, J.1
-
45
-
-
6344258807
-
-
Narayanan, U., Achsel, T., Luhrmann, R. & Matera, A. G. Coupled in vitro import of U snRNPs and SMN, the spinal muscular atrophy protein. Mol. Cell 16, 223-234 (2004). Showed that the SMN complex participates in nuclear import as an adaptor between the Sm core and importin-β.
-
Narayanan, U., Achsel, T., Luhrmann, R. & Matera, A. G. Coupled in vitro import of U snRNPs and SMN, the spinal muscular atrophy protein. Mol. Cell 16, 223-234 (2004). Showed that the SMN complex participates in nuclear import as an adaptor between the Sm core and importin-β.
-
-
-
-
46
-
-
0037017403
-
The importin-β binding domain of snurportin1 is responsible for the Ran- and energy-independent nuclear import of spliceosomal U snRNPs in vitro
-
Huber, J., Dickmanns, A. & Luhrmann, R. The importin-β binding domain of snurportin1 is responsible for the Ran- and energy-independent nuclear import of spliceosomal U snRNPs in vitro. J. Cell Biol. 156, 467-479 (2002).
-
(2002)
J. Cell Biol
, vol.156
, pp. 467-479
-
-
Huber, J.1
Dickmanns, A.2
Luhrmann, R.3
-
47
-
-
26244433138
-
Cross-talk between snurportin1 subdomains
-
Ospina, J. K. et al. Cross-talk between snurportin1 subdomains. Mol. Biol. Cell 16, 4660-4671 (2005).
-
(2005)
Mol. Biol. Cell
, vol.16
, pp. 4660-4671
-
-
Ospina, J.K.1
-
48
-
-
0033533730
-
Newly assembled snRNPs associate with coiled bodies before speckles, suggesting a nuclear snRNP maturation pathway
-
Sleeman, J. E. & Lamond, A. I. Newly assembled snRNPs associate with coiled bodies before speckles, suggesting a nuclear snRNP maturation pathway. Curr. Biol. 9, 1065-1074 (1999).
-
(1999)
Curr. Biol
, vol.9
, pp. 1065-1074
-
-
Sleeman, J.E.1
Lamond, A.I.2
-
49
-
-
0037450801
-
Targeting of U4/U6 small nuclear RNP assembly factor SART3/p110 to Cajal bodies
-
Stanek, D., Rader, S. D., Klingauf, M. & Neugebauer, K. M. Targeting of U4/U6 small nuclear RNP assembly factor SART3/p110 to Cajal bodies. J. Cell Biol. 160, 505-516 (2003).
-
(2003)
J. Cell Biol
, vol.160
, pp. 505-516
-
-
Stanek, D.1
Rader, S.D.2
Klingauf, M.3
Neugebauer, K.M.4
-
50
-
-
5444231229
-
A role for Cajal bodies in the final steps of U2 snRNP biogenesis
-
Nesic, D., Tanackovic, G. & Kramer, A. A role for Cajal bodies in the final steps of U2 snRNP biogenesis. J. Cell Sci. 117, 4423-4433 (2004).
-
(2004)
J. Cell Sci
, vol.117
, pp. 4423-4433
-
-
Nesic, D.1
Tanackovic, G.2
Kramer, A.3
-
51
-
-
4143124637
-
RNAi knockdown of hPrp31 leads to an accumulation of U4/U6 di-snRNPs in Cajal bodies
-
Schaffert, N., Hossbach, M., Heintzmann, R., Achsel, T. & Luhrmann, R. RNAi knockdown of hPrp31 leads to an accumulation of U4/U6 di-snRNPs in Cajal bodies. EMBO J. 23, 3000-3009 (2004).
-
(2004)
EMBO J
, vol.23
, pp. 3000-3009
-
-
Schaffert, N.1
Hossbach, M.2
Heintzmann, R.3
Achsel, T.4
Luhrmann, R.5
-
52
-
-
4644309827
-
Detection of snRNP assembly intermediates in Cajal bodies by fluorescence resonance energy transfer
-
Stanek, D. & Neugebauer, K. M. Detection of snRNP assembly intermediates in Cajal bodies by fluorescence resonance energy transfer. J. Cell Biol. 166, 1015-1025 (2004).
-
(2004)
J. Cell Biol
, vol.166
, pp. 1015-1025
-
-
Stanek, D.1
Neugebauer, K.M.2
-
53
-
-
14844312915
-
Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo
-
Tanackovic, G. & Kramer, A. Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo. Mol. Biol. Cell 16, 1366-1377 (2005).
-
(2005)
Mol. Biol. Cell
, vol.16
, pp. 1366-1377
-
-
Tanackovic, G.1
Kramer, A.2
-
54
-
-
0037260415
-
Plant snoRNA database
-
Brown, J. W. et al. Plant snoRNA database. Nucleic Acids Res. 31, 432-435 (2003).
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 432-435
-
-
Brown, J.W.1
-
55
-
-
33644875300
-
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
-
Lestrade, L. & Weber, M. J. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res. 34, D158-D162 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Lestrade, L.1
Weber, M.J.2
-
56
-
-
0037133942
-
Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
-
Kiss, T. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109, 145-148 (2002).
-
(2002)
Cell
, vol.109
, pp. 145-148
-
-
Kiss, T.1
-
57
-
-
2942610793
-
RNA structure and function in C/D and H/ACA s(no)RNPs
-
Henras, A. K., Dez, C. & Henry, Y. RNA structure and function in C/D and H/ACA s(no)RNPs. Curr. Opin. Struct. Biol. 14, 335-343 (2004).
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 335-343
-
-
Henras, A.K.1
Dez, C.2
Henry, Y.3
-
58
-
-
19444374397
-
The many facets of H/ACA ribonucleoproteins
-
Meier, U. T. The many facets of H/ACA ribonucleoproteins. Chromosoma 114, 1-14 (2005).
-
(2005)
Chromosoma
, vol.114
, pp. 1-14
-
-
Meier, U.T.1
-
59
-
-
0036176517
-
Small nucleolar RNAs: Versatile trans-acting molecules of ancient evolutionary origin
-
Terns, M. P. & Terns, R. M. Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin. Gene Expr. 10, 17-39 (2002).
-
(2002)
Gene Expr
, vol.10
, pp. 17-39
-
-
Terns, M.P.1
Terns, R.M.2
-
60
-
-
33847212413
-
-
Yu, Y. T., Terns, R. M. & Terns, M. P. in Fine-tuning of RNA Functions by Modification and Editing 12 (ed. Grosjean, H.) 223-262 (Topics in Current Genetics, New York, 2005).
-
Yu, Y. T., Terns, R. M. & Terns, M. P. in Fine-tuning of RNA Functions by Modification and Editing Vol. 12 (ed. Grosjean, H.) 223-262 (Topics in Current Genetics, New York, 2005).
-
-
-
-
61
-
-
0037428520
-
RNA-guided nucleotide modification of ribosomal and other RNAs
-
Decatur, W. A. & Fournier, M. J. RNA-guided nucleotide modification of ribosomal and other RNAs. J. Biol. Chem. 278, 695-698 (2003).
-
(2003)
J. Biol. Chem
, vol.278
, pp. 695-698
-
-
Decatur, W.A.1
Fournier, M.J.2
-
62
-
-
0037013831
-
-
Darzacq, X. et al. Cajal body-specific small nuclear RNAs: a novel class of 2′-O-methylation and pseudouridylation guide RNAs. EMBO J. 21, 2746-2756 (2002). Identified scaRNAs as modification-guide RNAs that localize in Cajal bodies.
-
Darzacq, X. et al. Cajal body-specific small nuclear RNAs: a novel class of 2′-O-methylation and pseudouridylation guide RNAs. EMBO J. 21, 2746-2756 (2002). Identified scaRNAs as modification-guide RNAs that localize in Cajal bodies.
-
-
-
-
63
-
-
0034999985
-
A guided tour: Small RNA function in Archaea
-
Dennis, P. P., Omer, A. & Lowe, T. A guided tour: small RNA function in Archaea. Mol. Microbiol. 40, 509-519 (2001).
-
(2001)
Mol. Microbiol
, vol.40
, pp. 509-519
-
-
Dennis, P.P.1
Omer, A.2
Lowe, T.3
-
64
-
-
1542298827
-
Small nucleolar RNAs that guide modification in trypanosomatids: Repertoire, targets, genome organisation, and unique functions
-
Uliel, S., Liang, X. H., Unger, R. & Michaeli, S. Small nucleolar RNAs that guide modification in trypanosomatids: repertoire, targets, genome organisation, and unique functions. Int. J. Parasitol. 34, 445-454 (2004).
-
(2004)
Int. J. Parasitol
, vol.34
, pp. 445-454
-
-
Uliel, S.1
Liang, X.H.2
Unger, R.3
Michaeli, S.4
-
65
-
-
0034687740
-
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization
-
Cavaille, J. et al. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Proc. Natl Acad. Sci. USA 97, 14311-14316 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 14311-14316
-
-
Cavaille, J.1
-
66
-
-
22344445939
-
ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs
-
Vitali, P. et al. ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. J. Cell Biol. 169, 745-753 (2005).
-
(2005)
J. Cell Biol
, vol.169
, pp. 745-753
-
-
Vitali, P.1
-
67
-
-
30844442607
-
The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
-
Kishore, S. & Stamm, S. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 311, 230-232 (2006).
-
(2006)
Science
, vol.311
, pp. 230-232
-
-
Kishore, S.1
Stamm, S.2
-
68
-
-
33745862398
-
The biogenesis and regulation of telomerase holoenzymes
-
Collins, K. The biogenesis and regulation of telomerase holoenzymes. Nature Rev. Mol. Cell Biol. 7, 484-494 (2006).
-
(2006)
Nature Rev. Mol. Cell Biol
, vol.7
, pp. 484-494
-
-
Collins, K.1
-
69
-
-
0035355205
-
RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
-
Huttenhofer, A. et al. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 20, 2943-2953 (2001).
-
(2001)
EMBO J
, vol.20
, pp. 2943-2953
-
-
Huttenhofer, A.1
-
70
-
-
2942718696
-
Human box H/ACA pseudouridylation guide RNA machinery
-
Kiss, A. M., Jady, B. E., Bertrand, E. & Kiss, T. Human box H/ACA pseudouridylation guide RNA machinery. Mol. Cell. Biol. 24, 5797-5807 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 5797-5807
-
-
Kiss, A.M.1
Jady, B.E.2
Bertrand, E.3
Kiss, T.4
-
71
-
-
0037117533
-
-
Omer, A. D., Ziesche, S., Ebhardt, H. & Dennis, P. P. In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl Acad. Sci. USA 99, 5289-5294 (2002). Established the essential components of the C/D RNP and its hierarchical assembly pathway.
-
Omer, A. D., Ziesche, S., Ebhardt, H. & Dennis, P. P. In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl Acad. Sci. USA 99, 5289-5294 (2002). Established the essential components of the C/D RNP and its hierarchical assembly pathway.
-
-
-
-
72
-
-
0344668865
-
In vitro RNP assembly and methylation guide activity of an unusual box C/D RNA, cis-acting archaeal pre-tRNA(Trp)
-
Bortolin, M. L., Bachellerie, J. P. & Clouet-d'Orval, B. In vitro RNP assembly and methylation guide activity of an unusual box C/D RNA, cis-acting archaeal pre-tRNA(Trp). Nucleic Acids Res. 31, 6524-6535 (2003).
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6524-6535
-
-
Bortolin, M.L.1
Bachellerie, J.P.2
Clouet-d'Orval, B.3
-
73
-
-
0141869105
-
Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles
-
Rashid, R. et al. Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles. J. Mol. Biol. 333, 295-306 (2003).
-
(2003)
J. Mol. Biol
, vol.333
, pp. 295-306
-
-
Rashid, R.1
-
74
-
-
0043026864
-
Efficient RNA 2′-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C′/D′ RNPs
-
Tran, E. J., Zhang, X. & Maxwell, E. S. Efficient RNA 2′-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C′/D′ RNPs. EMBO J. 22, 3930-3940 (2003).
-
(2003)
EMBO J
, vol.22
, pp. 3930-3940
-
-
Tran, E.J.1
Zhang, X.2
Maxwell, E.S.3
-
75
-
-
18844397555
-
RNA-guided RNA modification: Functional organization of the archaeal H/ACA RNP
-
Baker, D. L. et al. RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP. Genes Dev. 19, 1238-1248 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 1238-1248
-
-
Baker, D.L.1
-
76
-
-
20144374350
-
-
Charpentier, B., Muller, S. & Branlant, C. Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation. Nucleic Acids Res. 33, 3133-3144 (2005). References 75 and 76 defined the essential components and organization of the H/ACA RNP.
-
Charpentier, B., Muller, S. & Branlant, C. Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation. Nucleic Acids Res. 33, 3133-3144 (2005). References 75 and 76 defined the essential components and organization of the H/ACA RNP.
-
-
-
-
77
-
-
0034141555
-
Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution
-
Wang, H., Boisvert, D., Kim, K. K., Kim, R. & Kim, S. H. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution. EMBO J. 19, 317-323 (2000).
-
(2000)
EMBO J
, vol.19
, pp. 317-323
-
-
Wang, H.1
Boisvert, D.2
Kim, K.K.3
Kim, R.4
Kim, S.H.5
-
78
-
-
1242295287
-
Structure determination of fibrillarin from the hyperthermophilic archaeon Pyrococcus furiosus
-
Deng, L. et al. Structure determination of fibrillarin from the hyperthermophilic archaeon Pyrococcus furiosus. Biochem. Biophys. Res. Commun. 315, 726-732 (2004).
-
(2004)
Biochem. Biophys. Res. Commun
, vol.315
, pp. 726-732
-
-
Deng, L.1
-
79
-
-
0037389971
-
-
Aittaleb, M. et al. Structure and function of archaeal box C/D sRNP core proteins. Nature Struct. Biol. 10, 256-263 (2003). Provided insight into the structure and organization of a key subcomplex of the C/D RNP.
-
Aittaleb, M. et al. Structure and function of archaeal box C/D sRNP core proteins. Nature Struct. Biol. 10, 256-263 (2003). Provided insight into the structure and organization of a key subcomplex of the C/D RNP.
-
-
-
-
80
-
-
22244460838
-
-
Suryadi, J., Tran, E. J., Maxwell, E. S. & Brown, B. A. 2nd. The crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs. Biochemistry 44, 9657-9672 (2005).
-
Suryadi, J., Tran, E. J., Maxwell, E. S. & Brown, B. A. 2nd. The crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs. Biochemistry 44, 9657-9672 (2005).
-
-
-
-
81
-
-
2342475659
-
Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA
-
Moore, T., Zhang, Y., Fenley, M. O. & Li, H. Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA. Structure 12, 807-818 (2004).
-
(2004)
Structure
, vol.12
, pp. 807-818
-
-
Moore, T.1
Zhang, Y.2
Fenley, M.O.3
Li, H.4
-
82
-
-
30744445688
-
Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita
-
Rashid, R. et al. Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. Mol. Cell 21, 249-260 (2006).
-
(2006)
Mol. Cell
, vol.21
, pp. 249-260
-
-
Rashid, R.1
-
83
-
-
33644867181
-
Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity
-
Manival, X. et al. Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity. Nucleic Acids Res. 34, 826-839 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 826-839
-
-
Manival, X.1
-
84
-
-
28544449371
-
The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs
-
Hamma, T., Reichow, S. L., Varani, G. & Ferre-D'Amare, A. R. The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nature Struct. Mol. Biol. 12, 1101-1107 (2005).
-
(2005)
Nature Struct. Mol. Biol
, vol.12
, pp. 1101-1107
-
-
Hamma, T.1
Reichow, S.L.2
Varani, G.3
Ferre-D'Amare, A.R.4
-
85
-
-
2342638215
-
Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 Å resolution
-
Hamma, T. & Ferre-D'Amare, A. R. Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 Å resolution. Structure 12, 893-903 (2004).
-
(2004)
Structure
, vol.12
, pp. 893-903
-
-
Hamma, T.1
Ferre-D'Amare, A.R.2
-
86
-
-
33748947672
-
-
Li, L. & Ye, K. Crystal structure of an H/ACA box ribonucleoprotein particle. Nature 443, 302-307 (2006). References 82 and 86 describe the crystal structures of H/ACA RNP complexes and provide insight into the molecular basis of dyskeratosis congenita.
-
Li, L. & Ye, K. Crystal structure of an H/ACA box ribonucleoprotein particle. Nature 443, 302-307 (2006). References 82 and 86 describe the crystal structures of H/ACA RNP complexes and provide insight into the molecular basis of dyskeratosis congenita.
-
-
-
-
87
-
-
0033518188
-
A telomerase component is defective in the human disease dyskeratosis congenita
-
Mitchell, J. R., Wood, E. & Collins, K. A telomerase component is defective in the human disease dyskeratosis congenita. Nature 402, 551-555 (1999).
-
(1999)
Nature
, vol.402
, pp. 551-555
-
-
Mitchell, J.R.1
Wood, E.2
Collins, K.3
-
88
-
-
3242656131
-
Mouse dyskerin mutations affect accumulation of telomerase RNA and small nucleolar RNA, telomerase activity, and ribosomal RNA processing
-
Mochizuki, Y., He, J., Kulkarni, S., Bessler, M. & Mason, P. J. Mouse dyskerin mutations affect accumulation of telomerase RNA and small nucleolar RNA, telomerase activity, and ribosomal RNA processing. Proc. Natl Acad. Sci. USA 101, 10756-10761 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 10756-10761
-
-
Mochizuki, Y.1
He, J.2
Kulkarni, S.3
Bessler, M.4
Mason, P.J.5
-
89
-
-
19444383162
-
Dyskeratosis congenita: Telomerase, telomeres and anticipation
-
Marrone, A., Walne, A. & Dokal, I. Dyskeratosis congenita: telomerase, telomeres and anticipation. Curr. Opin. Genet. Dev. 15, 249-257 (2005).
-
(2005)
Curr. Opin. Genet. Dev
, vol.15
, pp. 249-257
-
-
Marrone, A.1
Walne, A.2
Dokal, I.3
-
90
-
-
0031788801
-
Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure
-
Watkins, N. J. et al. Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure. RNA 4, 1549-1568 (1998).
-
(1998)
RNA
, vol.4
, pp. 1549-1568
-
-
Watkins, N.J.1
-
91
-
-
18744363324
-
Immunopurified small nucleolar ribonucleoprotein particles pseudouridylate rRNA independently of their association with phosphorylated Nopp140
-
Wang, C., Query, C. C. & Meier, U. T. Immunopurified small nucleolar ribonucleoprotein particles pseudouridylate rRNA independently of their association with phosphorylated Nopp140. Mol. Cell. Biol. 22, 8457-8466 (2002).
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 8457-8466
-
-
Wang, C.1
Query, C.C.2
Meier, U.T.3
-
92
-
-
7044285916
-
Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs
-
Henras, A. K., Capeyrou, R., Henry, Y. & Caizergues-Ferrer, M. Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs. RNA 10, 1704-1712 (2004).
-
(2004)
RNA
, vol.10
, pp. 1704-1712
-
-
Henras, A.K.1
Capeyrou, R.2
Henry, Y.3
Caizergues-Ferrer, M.4
-
93
-
-
33745477012
-
Protein-protein and protein-RNA contacts both contribute to the 15.5K-mediated assembly of the U4/U6 snRNP and the box C/D snoRNPs
-
Schultz, A., Nottrott, S., Watkins, N. J. & Luhrmann, R. Protein-protein and protein-RNA contacts both contribute to the 15.5K-mediated assembly of the U4/U6 snRNP and the box C/D snoRNPs. Mol. Cell. Biol. 26, 5146-5154 (2006).
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 5146-5154
-
-
Schultz, A.1
Nottrott, S.2
Watkins, N.J.3
Luhrmann, R.4
-
94
-
-
0036773686
-
Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP
-
Szewczak, L. B., DeGregorio, S. J., Strobel, S. A. & Steitz, J. A. Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP. Chem. Biol. 9, 1095-1107 (2002).
-
(2002)
Chem. Biol
, vol.9
, pp. 1095-1107
-
-
Szewczak, L.B.1
DeGregorio, S.J.2
Strobel, S.A.3
Steitz, J.A.4
-
95
-
-
33646076438
-
Stepwise RNP assembly at the site of H/ACA RNA transcription in human cells
-
Darzacq, X. et al. Stepwise RNP assembly at the site of H/ACA RNA transcription in human cells. J. Cell Biol. 173, 207-218 (2006).
-
(2006)
J. Cell Biol
, vol.173
, pp. 207-218
-
-
Darzacq, X.1
-
96
-
-
20744440616
-
The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae
-
Ballarino, M., Morlando, M., Pagano, F., Fatica, A. & Bozzoni, I. The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 25, 5396-5403 (2005).
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 5396-5403
-
-
Ballarino, M.1
Morlando, M.2
Pagano, F.3
Fatica, A.4
Bozzoni, I.5
-
97
-
-
16244366466
-
-
Yang, P. K. et al. Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly. Mol. Cell. Biol. 25, 3295-3304 (2005). References 95 and 97 provided detailed evidence for the current model of co-transcriptional assembly of inactive pre-H/ACA RNPs, including the role of exchange factors.
-
Yang, P. K. et al. Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly. Mol. Cell. Biol. 25, 3295-3304 (2005). References 95 and 97 provided detailed evidence for the current model of co-transcriptional assembly of inactive pre-H/ACA RNPs, including the role of exchange factors.
-
-
-
-
98
-
-
33645296102
-
Cotranscriptional recognition of human intronic box H/ACA snoRNAs occurs in a splicing-independent manner
-
Richard, P., Kiss, A. M., Darzacq, X. & Kiss, T. Cotranscriptional recognition of human intronic box H/ACA snoRNAs occurs in a splicing-independent manner. Mol. Cell. Biol. 26, 2540-2549 (2006).
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 2540-2549
-
-
Richard, P.1
Kiss, A.M.2
Darzacq, X.3
Kiss, T.4
-
99
-
-
0036916733
-
Naf1 p is a box H/ACA snoRNP assembly factor
-
Fatica, A., Dlakic, M. & Tollervey, D. Naf1 p is a box H/ACA snoRNP assembly factor. RNA 8, 1502-1514 (2002).
-
(2002)
RNA
, vol.8
, pp. 1502-1514
-
-
Fatica, A.1
Dlakic, M.2
Tollervey, D.3
-
100
-
-
0037159511
-
The Shq1p-Naf1p complex is required for box H/ACA small nucleolar ribonucleoprotein particle biogenesis
-
Yang, P. K., Rotondo, G., Porras, T., Legrain, P. & Chanfreau, G. The Shq1p-Naf1p complex is required for box H/ACA small nucleolar ribonucleoprotein particle biogenesis. J. Biol. Chem. 277, 45235-45242 (2002).
-
(2002)
J. Biol. Chem
, vol.277
, pp. 45235-45242
-
-
Yang, P.K.1
Rotondo, G.2
Porras, T.3
Legrain, P.4
Chanfreau, G.5
-
101
-
-
0036786962
-
Naf1p, an essential nucleoplasmic factor specifically required for accumulation of box H/ACA small nucleolar RNPs
-
Dez, C., Noaillac-Depeyre, J., Caizergues-Ferrer, M. & Henry, Y. Naf1p, an essential nucleoplasmic factor specifically required for accumulation of box H/ACA small nucleolar RNPs. Mol. Cell. Biol. 22, 7053-7065 (2002).
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 7053-7065
-
-
Dez, C.1
Noaillac-Depeyre, J.2
Caizergues-Ferrer, M.3
Henry, Y.4
-
102
-
-
33646200076
-
hNaf1 is required for accumulation of human box H/ACA snoRNPs, scaRNPs, and telomerase
-
Hoareau-Aveilla, C., Bonoli, M., Caizergues-Ferrer, M. & Henry, Y. hNaf1 is required for accumulation of human box H/ACA snoRNPs, scaRNPs, and telomerase. RNA 12, 832-840 (2006).
-
(2006)
RNA
, vol.12
, pp. 832-840
-
-
Hoareau-Aveilla, C.1
Bonoli, M.2
Caizergues-Ferrer, M.3
Henry, Y.4
-
103
-
-
3242707680
-
Coupling between snoRNP assembly and 3′ processing controls box C/D snoRNA biosynthesis in yeast
-
Morlando, M. et al. Coupling between snoRNP assembly and 3′ processing controls box C/D snoRNA biosynthesis in yeast. EMBO J. 23, 2392-2401 (2004).
-
(2004)
EMBO J
, vol.23
, pp. 2392-2401
-
-
Morlando, M.1
-
104
-
-
0035818553
-
Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells
-
Hirose, T. & Steitz, J. A. Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells. Proc. Natl Acad. Sci. USA 98, 12914-12919 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 12914-12919
-
-
Hirose, T.1
Steitz, J.A.2
-
105
-
-
0037013939
-
Mammalian and yeast U3 snoRNPs are matured in specific and related nuclear compartments
-
Verheggen, C. et al. Mammalian and yeast U3 snoRNPs are matured in specific and related nuclear compartments. EMBO J. 21, 2736-2745 (2002).
-
(2002)
EMBO J
, vol.21
, pp. 2736-2745
-
-
Verheggen, C.1
-
106
-
-
0043172414
-
Splicing-dependent and-independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells
-
Hirose, T., Shu, M. D. & Steitz, J. A. Splicing-dependent and-independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells. Mol. Cell 12, 113-123 (2003).
-
(2003)
Mol. Cell
, vol.12
, pp. 113-123
-
-
Hirose, T.1
Shu, M.D.2
Steitz, J.A.3
-
107
-
-
33748169778
-
A spliceosomal intron binding protein, IBP160, links position-dependent assembly of intron-encoded box C/D snoRNP to pre-mRNA splicing
-
Hirose, T. et al. A spliceosomal intron binding protein, IBP160, links position-dependent assembly of intron-encoded box C/D snoRNP to pre-mRNA splicing. Mol. Cell 23, 673-684 (2006).
-
(2006)
Mol. Cell
, vol.23
, pp. 673-684
-
-
Hirose, T.1
-
108
-
-
0037708880
-
A panoramic view of yeast noncoding RNA processing
-
Peng, W. T. et al. A panoramic view of yeast noncoding RNA processing. Cell 113, 919-933 (2003).
-
(2003)
Cell
, vol.113
, pp. 919-933
-
-
Peng, W.T.1
-
109
-
-
19644390671
-
Global analysis of yeast RNA processing identifies new targets of RNase III and uncovers a link between tRNA 5′ end processing and tRNA splicing
-
Hiley, S. L., Babak, T. & Hughes, T. R. Global analysis of yeast RNA processing identifies new targets of RNase III and uncovers a link between tRNA 5′ end processing and tRNA splicing. Nucleic Acids Res. 33, 3048-3056 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3048-3056
-
-
Hiley, S.L.1
Babak, T.2
Hughes, T.R.3
-
110
-
-
33745869788
-
RNA-quality control by the exosome
-
Houseley, J., LaCava, J. & Tollervey, D. RNA-quality control by the exosome. Nature Rev. Mol. Cell Biol. 7, 529-539 (2006).
-
(2006)
Nature Rev. Mol. Cell Biol
, vol.7
, pp. 529-539
-
-
Houseley, J.1
LaCava, J.2
Tollervey, D.3
-
111
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
LaCava, J. et al. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121, 713-724 (2005).
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
LaCava, J.1
-
112
-
-
30744467674
-
Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts
-
Vasiljeva, L. & Buratowski, S. Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts. Mol. Cell 21, 239-248 (2006).
-
(2006)
Mol. Cell
, vol.21
, pp. 239-248
-
-
Vasiljeva, L.1
Buratowski, S.2
-
113
-
-
0034769951
-
A well-connected and conserved nucleoplasmic helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins
-
King, T. H., Decatur, W. A., Bertrand, E., Maxwell, E. S. & Fournier, M. J. A well-connected and conserved nucleoplasmic helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins. Mol. Cell. Biol. 21, 7731-7746 (2001).
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 7731-7746
-
-
King, T.H.1
Decatur, W.A.2
Bertrand, E.3
Maxwell, E.S.4
Fournier, M.J.5
-
114
-
-
0032125707
-
The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization
-
Samarsky, D. A., Fournier, M. J., Singer, R. H. & Bertrand, E. The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization. EMBO J. 17, 3747-3757 (1998).
-
(1998)
EMBO J
, vol.17
, pp. 3747-3757
-
-
Samarsky, D.A.1
Fournier, M.J.2
Singer, R.H.3
Bertrand, E.4
-
115
-
-
0042967786
-
A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs
-
Richard, P. et al. A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. EMBO J. 22, 4283-4293 (2003).
-
(2003)
EMBO J
, vol.22
, pp. 4283-4293
-
-
Richard, P.1
-
116
-
-
0032874290
-
Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli
-
Narayanan, A., Speckmann, W., Terns, R. & Terns, M. P. Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli. Mol. Biol. Cell 10, 2131-2147 (1999).
-
(1999)
Mol. Biol. Cell
, vol.10
, pp. 2131-2147
-
-
Narayanan, A.1
Speckmann, W.2
Terns, R.3
Terns, M.P.4
-
117
-
-
0345169047
-
The centennial of the Cajal body
-
Gall, J. G. The centennial of the Cajal body. Nature Rev. Mol. Cell Biol. 4, 975-980 (2003).
-
(2003)
Nature Rev. Mol. Cell Biol
, vol.4
, pp. 975-980
-
-
Gall, J.G.1
-
118
-
-
28444456713
-
Cajal bodies: A long history of discovery
-
Cioce, M. & Lamond, A. I. Cajal bodies: a long history of discovery. Annu. Rev. Cell. Dev. Biol. 21, 105-131 (2005).
-
(2005)
Annu. Rev. Cell. Dev. Biol
, vol.21
, pp. 105-131
-
-
Cioce, M.1
Lamond, A.I.2
-
119
-
-
2142754136
-
The SMN complex
-
Gubitz, A. K., Feng, W. & Dreyfuss, G. The SMN complex. Exp. Cell Res. 296, 51-56 (2004).
-
(2004)
Exp. Cell Res
, vol.296
, pp. 51-56
-
-
Gubitz, A.K.1
Feng, W.2
Dreyfuss, G.3
-
120
-
-
0037073714
-
Determinants of the interaction of the spinal muscular atrophy disease protein SMN with the dimethylarginine-modified box H/ACA small nucleolar ribonucleoprotein GAR1
-
Whitehead, S. E. et al. Determinants of the interaction of the spinal muscular atrophy disease protein SMN with the dimethylarginine-modified box H/ACA small nucleolar ribonucleoprotein GAR1. J. Biol. Chem. 277, 48087-48093 (2002).
-
(2002)
J. Biol. Chem
, vol.277
, pp. 48087-48093
-
-
Whitehead, S.E.1
-
121
-
-
0035943003
-
The survival of motor neurons (SMN) protein interacts with the snoRNP proteins fibrillarin and GAR1
-
Pellizzoni, L., Baccon, J., Charroux, B. & Dreyfuss, G. The survival of motor neurons (SMN) protein interacts with the snoRNP proteins fibrillarin and GAR1. Curr. Biol. 11, 1079-1088 (2001).
-
(2001)
Curr. Biol
, vol.11
, pp. 1079-1088
-
-
Pellizzoni, L.1
Baccon, J.2
Charroux, B.3
Dreyfuss, G.4
-
122
-
-
0035914360
-
Direct interaction of the spinal muscular atrophy disease protein SMN with the small nucleolar RNA-associated protein fibrillarin
-
Jones, K. W. et al. Direct interaction of the spinal muscular atrophy disease protein SMN with the small nucleolar RNA-associated protein fibrillarin. J. Biol. Chem. 276, 38645-38651 (2001).
-
(2001)
J. Biol. Chem
, vol.276
, pp. 38645-38651
-
-
Jones, K.W.1
-
123
-
-
0033568032
-
Nucleolar localization signals of box H/ACA small nucleolar RNAs
-
Narayanan, A. et al. Nucleolar localization signals of box H/ACA small nucleolar RNAs. EMBO J. 18, 5120-5130 (1999).
-
(1999)
EMBO J
, vol.18
, pp. 5120-5130
-
-
Narayanan, A.1
-
124
-
-
0032720965
-
Box H and box ACA are nucleolar localization elements of U17 small nucleolar RNA
-
Lange, T. S., Ezrokhi, M., Amaldi, F. & Gerbi, S. A. Box H and box ACA are nucleolar localization elements of U17 small nucleolar RNA. Mol. Biol. Cell 10, 3877-3890 (1999).
-
(1999)
Mol. Biol. Cell
, vol.10
, pp. 3877-3890
-
-
Lange, T.S.1
Ezrokhi, M.2
Amaldi, F.3
Gerbi, S.A.4
-
125
-
-
17944388104
-
Human telomerase RNA and box H/ACA scaRNAs share a common Cajal body-specific localization signal
-
Jady, B. E., Bertrand, E. & Kiss, T. Human telomerase RNA and box H/ACA scaRNAs share a common Cajal body-specific localization signal. J. Cell Biol. 164, 647-652 (2004).
-
(2004)
J. Cell Biol
, vol.164
, pp. 647-652
-
-
Jady, B.E.1
Bertrand, E.2
Kiss, T.3
-
126
-
-
33644775758
-
Human telomerase and Cajal body ribonucleoproteins share a unique specificity of Sm protein association
-
Fu, D. & Collins, K. Human telomerase and Cajal body ribonucleoproteins share a unique specificity of Sm protein association. Genes Dev. 20, 531-536 (2006).
-
(2006)
Genes Dev
, vol.20
, pp. 531-536
-
-
Fu, D.1
Collins, K.2
-
127
-
-
31944444988
-
Cell cycle-regulated trafficking of human telomerase to telomeres
-
Tomlinson, R. L., Ziegler, T. D., Supakorndej, T., Terns, R. M. & Terns, M. P. Cell cycle-regulated trafficking of human telomerase to telomeres. Mol. Biol. Cell 17, 955-965 (2006).
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 955-965
-
-
Tomlinson, R.L.1
Ziegler, T.D.2
Supakorndej, T.3
Terns, R.M.4
Terns, M.P.5
-
128
-
-
31944436260
-
-
Jady, B. E., Richard, P., Bertrand, E. & Kiss, T. Cell cycle-dependent recruitment of telomerase RNA and Cajal bodies to human telomeres. Mol. Biol. Cell 17, 944-954 (2006). References 127 and 128 revealed that trafficking of the human telomerase RNP is regulated as a function of the cell cycle.
-
Jady, B. E., Richard, P., Bertrand, E. & Kiss, T. Cell cycle-dependent recruitment of telomerase RNA and Cajal bodies to human telomeres. Mol. Biol. Cell 17, 944-954 (2006). References 127 and 128 revealed that trafficking of the human telomerase RNP is regulated as a function of the cell cycle.
-
-
-
-
129
-
-
0033539171
-
Saccharomyces cerevisiae telomerase is an Sm small nuclear ribonucleoprotein particle
-
Seto, A. G., Zaug, A. J., Sobel, S. G., Wolin, S. L. & Cech, T. R. Saccharomyces cerevisiae telomerase is an Sm small nuclear ribonucleoprotein particle. Nature 401, 177-180 (1999).
-
(1999)
Nature
, vol.401
, pp. 177-180
-
-
Seto, A.G.1
Zaug, A.J.2
Sobel, S.G.3
Wolin, S.L.4
Cech, T.R.5
-
130
-
-
33745699398
-
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana
-
Li, C. F. et al. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 126, 93-106 (2006).
-
(2006)
Cell
, vol.126
, pp. 93-106
-
-
Li, C.F.1
-
131
-
-
33745690105
-
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
-
Pontes, O. et al. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 126, 79-92 (2006).
-
(2006)
Cell
, vol.126
, pp. 79-92
-
-
Pontes, O.1
-
132
-
-
26244434407
-
Is spinal muscular atrophy the result of defects in motor neuron processes?
-
Briese, M., Esmaeili, B. & Sattelle, D. B. Is spinal muscular atrophy the result of defects in motor neuron processes? Bioessays 27, 946-957 (2005).
-
(2005)
Bioessays
, vol.27
, pp. 946-957
-
-
Briese, M.1
Esmaeili, B.2
Sattelle, D.B.3
-
134
-
-
0037099680
-
Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP
-
Cahill, N. M. et al. Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP. EMBO J. 21, 3816-3828 (2002).
-
(2002)
EMBO J
, vol.21
, pp. 3816-3828
-
-
Cahill, N.M.1
-
135
-
-
0036591884
-
Biogenesis of small nucleolar ribonucleoproteins
-
Filipowicz, W. & Pogacic, V. Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell Biol. 14, 319-327 (2002).
-
(2002)
Curr. Opin. Cell Biol
, vol.14
, pp. 319-327
-
-
Filipowicz, W.1
Pogacic, V.2
-
136
-
-
0031753449
-
Role for a YY1-binding element in replication-dependent mouse histone gene expression
-
Eliassen, K. A., Baldwin, A., Sikorski, E. M. & Hurt, M. M. Role for a YY1-binding element in replication-dependent mouse histone gene expression. Mol. Cell. Biol. 18, 7106-7118 (1998).
-
(1998)
Mol. Cell. Biol
, vol.18
, pp. 7106-7118
-
-
Eliassen, K.A.1
Baldwin, A.2
Sikorski, E.M.3
Hurt, M.M.4
|