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Volumn 66, Issue 23, 2009, Pages 3727-3742

Retroelements and their impact on genome evolution and functioning

Author keywords

Alteration of gene expression; Cell defense; Genome evolution; Genome rearrangements; Retroelements

Indexed keywords

COMPLEMENTARY DNA; GENOMIC DNA;

EID: 70849129445     PISSN: 1420682X     EISSN: 14209071     Source Type: Journal    
DOI: 10.1007/s00018-009-0107-2     Document Type: Review
Times cited : (104)

References (157)
  • 1
    • 39749165104 scopus 로고    scopus 로고
    • Transposable elements as drivers of genomic and biological diversity in vertebrates
    • 18293113
    • A Bohne F Brunet D Galiana-Arnoux C Schultheis JN Volff 2008 Transposable elements as drivers of genomic and biological diversity in vertebrates Chromosome Res 16 203 215 18293113
    • (2008) Chromosome Res , vol.16 , pp. 203-215
    • Bohne, A.1    Brunet, F.2    Galiana-Arnoux, D.3    Schultheis, C.4    Volff, J.N.5
  • 2
    • 77049292314 scopus 로고
    • Controlling elements and the gene
    • 13433592
    • B McClintock 1956 Controlling elements and the gene Cold Spring Harb Symp Quant Biol 21 197 216 13433592
    • (1956) Cold Spring Harb Symp Quant Biol , vol.21 , pp. 197-216
    • McClintock, B.1
  • 3
    • 0032227093 scopus 로고    scopus 로고
    • Transposable elements and the evolution of gene expression
    • 10645433
    • SR Wessler 1998 Transposable elements and the evolution of gene expression Symp Soc Exp Biol 51 115 122 10645433
    • (1998) Symp Soc Exp Biol , vol.51 , pp. 115-122
    • Wessler, S.R.1
  • 4
    • 0037975554 scopus 로고    scopus 로고
    • Molecular paleontology of transposable elements in the Drosophila melanogaster genome
    • 12743378
    • VV Kapitonov J Jurka 2003 Molecular paleontology of transposable elements in the Drosophila melanogaster genome Proc Natl Acad Sci USA 100 6569 6574 12743378
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 6569-6574
    • Kapitonov, V.V.1    Jurka, J.2
  • 5
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium 2001 Initial sequencing and analysis of the human genome Nature 409 860 921
    • (2001) Nature , vol.409 , pp. 860-921
  • 6
    • 52949095077 scopus 로고    scopus 로고
    • Retrotransposons revisited: The restraint and rehabilitation of parasites
    • 18854152
    • JL Goodier HH Kazazian Jr 2008 Retrotransposons revisited: the restraint and rehabilitation of parasites Cell 135 23 35 18854152
    • (2008) Cell , vol.135 , pp. 23-35
    • Goodier, J.L.1    Kazazian Jr, H.H.2
  • 7
    • 57049092878 scopus 로고    scopus 로고
    • The take and give between retrotransposable elements and their hosts
    • 18680436
    • A Beauregard MJ Curcio M Belfort 2008 The take and give between retrotransposable elements and their hosts Annu Rev Genet 42 587 617 18680436
    • (2008) Annu Rev Genet , vol.42 , pp. 587-617
    • Beauregard, A.1    Curcio, M.J.2    Belfort, M.3
  • 8
    • 24644516249 scopus 로고    scopus 로고
    • LINE-1 retrotransposons: Modulators of quantity and quality of mammalian gene expression?
    • 16015595
    • JS Han JD Boeke 2005 LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression? Bioessays 27 775 784 16015595
    • (2005) Bioessays , vol.27 , pp. 775-784
    • Han, J.S.1    Boeke, J.D.2
  • 9
    • 5144227841 scopus 로고    scopus 로고
    • Retroelements and the human genome: New perspectives on an old relation
    • 15310846
    • N Bannert R Kurth 2004 Retroelements and the human genome: new perspectives on an old relation Proc Natl Acad Sci USA 101 suppl 2 14572 14579 15310846
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.SUPPL. 2 , pp. 14572-14579
    • Bannert, N.1    Kurth, R.2
  • 10
    • 0029927086 scopus 로고    scopus 로고
    • The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements
    • 8668192
    • K Ohshima M Hamada Y Terai N Okada 1996 The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements Mol Cell Biol 16 3756 3764 8668192
    • (1996) Mol Cell Biol , vol.16 , pp. 3756-3764
    • Ohshima, K.1    Hamada, M.2    Terai, Y.3    Okada, N.4
  • 11
    • 23844456247 scopus 로고    scopus 로고
    • Penelope-like elements-a new class of retroelements: Distribution, function and possible evolutionary significance
    • 16093704
    • MB Evgen'ev IR Arkhipova 2005 Penelope-like elements-a new class of retroelements: distribution, function and possible evolutionary significance Cytogenet Genome Res 110 510 521 16093704
    • (2005) Cytogenet Genome Res , vol.110 , pp. 510-521
    • Evgen'Ev, M.B.1    Arkhipova, I.R.2
  • 13
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • 9590283
    • HH Kazazian Jr JV Moran 1998 The impact of L1 retrotransposons on the human genome Nat Genet 19 19 24 9590283
    • (1998) Nat Genet , vol.19 , pp. 19-24
    • Kazazian Jr, H.H.1    Moran, J.V.2
  • 14
    • 0023867459 scopus 로고
    • Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man
    • 2831458
    • HH Kazazian Jr C Wong H Youssoufian AF Scott DG Phillips SE Antonarakis 1988 Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man Nature 332 164 166 2831458
    • (1988) Nature , vol.332 , pp. 164-166
    • Kazazian Jr, H.H.1    Wong, C.2    Youssoufian, H.3    Scott, A.F.4    Phillips, D.G.5    Antonarakis, S.E.6
  • 15
    • 34548799740 scopus 로고    scopus 로고
    • LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex
    • 17562864
    • JL Goodier L Zhang MR Vetter HH Kazazian Jr 2007 LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex Mol Cell Biol 27 6469 6483 17562864
    • (2007) Mol Cell Biol , vol.27 , pp. 6469-6483
    • Goodier, J.L.1    Zhang, L.2    Vetter, M.R.3    Kazazian Jr, H.H.4
  • 17
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • 7679954
    • DD Luan MH Korman JL Jakubczak TH Eickbush 1993 Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition Cell 72 595 605 7679954
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 18
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • 8945517
    • Q Feng JV Moran HH Kazazian Jr JD Boeke 1996 Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition Cell 87 905 916 8945517
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian Jr, H.H.3    Boeke, J.D.4
  • 19
    • 0031055331 scopus 로고    scopus 로고
    • Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
    • 9050872
    • J Jurka 1997 Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons Proc Natl Acad Sci USA 94 1872 1877 9050872
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 1872-1877
    • Jurka, J.1
  • 21
    • 0034079713 scopus 로고    scopus 로고
    • Human LINE retrotransposons generate processed pseudogenes
    • DOI 10.1038/74184
    • C Esnault J Maestre T Heidmann 2000 Human LINE retrotransposons generate processed pseudogenes Nat Genet 24 363 367 10742098 (Pubitemid 30187433)
    • (2000) Nature Genetics , vol.24 , Issue.4 , pp. 363-367
    • Esnault, C.1    Maestre, J.2    Heidmann, T.3
  • 22
    • 34248512741 scopus 로고    scopus 로고
    • Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
    • 17495012
    • AJ Gentles MJ Wakefield O Kohany W Gu MA Batzer DD Pollock J Jurka 2007 Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica Genome Res 17 992 1004 17495012
    • (2007) Genome Res , vol.17 , pp. 992-1004
    • Gentles, A.J.1    Wakefield, M.J.2    Kohany, O.3    Gu, W.4    Batzer, M.A.5    Pollock, D.D.6    Jurka, J.7
  • 23
    • 0032878301 scopus 로고    scopus 로고
    • A conserved nuclear element with a role in mammalian gene regulation
    • 10441336
    • SR Donnelly TE Hawkins SE Moss 1999 A conserved nuclear element with a role in mammalian gene regulation Hum Mol Genet 8 1723 1728 10441336
    • (1999) Hum Mol Genet , vol.8 , pp. 1723-1728
    • Donnelly, S.R.1    Hawkins, T.E.2    Moss, S.E.3
  • 24
    • 0026862794 scopus 로고
    • Transposing without ends: The non-LTR retrotransposable elements
    • 1325183
    • TH Eickbush 1992 Transposing without ends: the non-LTR retrotransposable elements New Biol 4 430 440 1325183
    • (1992) New Biol , vol.4 , pp. 430-440
    • Eickbush, T.H.1
  • 25
  • 26
    • 33646247399 scopus 로고    scopus 로고
    • Estimating the retrotransposition rate of human Alu elements
    • 16522357
    • R Cordaux DJ Hedges SW Herke MA Batzer 2006 Estimating the retrotransposition rate of human Alu elements Gene 373 134 137 16522357
    • (2006) Gene , vol.373 , pp. 134-137
    • Cordaux, R.1    Hedges, D.J.2    Herke, S.W.3    Batzer, M.A.4
  • 27
    • 0022555861 scopus 로고
    • Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information
    • 2427017
    • AM Weiner PL Deininger A Efstratiadis 1986 Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information Annu Rev Biochem 55 631 661 2427017
    • (1986) Annu Rev Biochem , vol.55 , pp. 631-661
    • Weiner, A.M.1    Deininger, P.L.2    Efstratiadis, A.3
  • 28
    • 0032865868 scopus 로고    scopus 로고
    • RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements
    • 10570990
    • J Brosius 1999 RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements Gene 238 115 134 10570990
    • (1999) Gene , vol.238 , pp. 115-134
    • Brosius, J.1
  • 29
    • 43049094016 scopus 로고    scopus 로고
    • The diversity of retrotransposons and the properties of their reverse transcriptases
    • 18261821
    • TH Eickbush VK Jamburuthugoda 2008 The diversity of retrotransposons and the properties of their reverse transcriptases Virus Res 134 221 234 18261821
    • (2008) Virus Res , vol.134 , pp. 221-234
    • Eickbush, T.H.1    Jamburuthugoda, V.K.2
  • 30
    • 0029556272 scopus 로고
    • Evolution and biological significance of human retroelements
    • 8828141
    • C Leib-Mosch W Seifarth 1995 Evolution and biological significance of human retroelements Virus Genes 11 133 145 8828141
    • (1995) Virus Genes , vol.11 , pp. 133-145
    • Leib-Mosch, C.1    Seifarth, W.2
  • 31
    • 0033964662 scopus 로고    scopus 로고
    • Retroviruses and primate evolution
    • 10655035
    • ED Sverdlov 2000 Retroviruses and primate evolution Bioessays 22 161 171 10655035
    • (2000) Bioessays , vol.22 , pp. 161-171
    • Sverdlov, E.D.1
  • 32
    • 3543077303 scopus 로고    scopus 로고
    • Retroviral repeat sequences
    • Gardiner K (ed) Nature Publishing, London
    • Mager D, Medstrand P (2002) Retroviral repeat sequences. In: Gardiner K (ed) Encyclopedia of the human genome. Nature Publishing, London
    • (2002) Encyclopedia of the Human Genome
    • Mager, D.1    Medstrand, P.2
  • 33
    • 23844559179 scopus 로고    scopus 로고
    • DIRS-1 and the other tyrosine recombinase retrotransposons
    • 16093711
    • RT Poulter TJ Goodwin 2005 DIRS-1 and the other tyrosine recombinase retrotransposons Cytogenet Genome Res 110 575 588 16093711
    • (2005) Cytogenet Genome Res , vol.110 , pp. 575-588
    • Poulter, R.T.1    Goodwin, T.J.2
  • 34
    • 0022157359 scopus 로고
    • Sequence of Dictyostelium DIRS-1: An apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence
    • 2416457
    • J Cappello K Handelsman HF Lodish 1985 Sequence of Dictyostelium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence Cell 43 105 115 2416457
    • (1985) Cell , vol.43 , pp. 105-115
    • Cappello, J.1    Handelsman, K.2    Lodish, H.F.3
  • 35
    • 1842609646 scopus 로고    scopus 로고
    • A new group of tyrosine recombinase-encoding retrotransposons
    • 14963102
    • TJ Goodwin RT Poulter 2004 A new group of tyrosine recombinase-encoding retrotransposons Mol Biol Evol 21 746 759 14963102
    • (2004) Mol Biol Evol , vol.21 , pp. 746-759
    • Goodwin, T.J.1    Poulter, R.T.2
  • 37
    • 0028246851 scopus 로고
    • Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region. Molecular cloning, exon-intron structure, composite retroposon, and breakpoint of gene duplication
    • 8132574
    • L Shen LC Wu S Sanlioglu R Chen AR Mendoza AW Dangel MC Carroll WB Zipf CY Yu 1994 Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region. Molecular cloning, exon-intron structure, composite retroposon, and breakpoint of gene duplication J Biol Chem 269 8466 8476 8132574
    • (1994) J Biol Chem , vol.269 , pp. 8466-8476
    • Shen, L.1    Wu, L.C.2    Sanlioglu, S.3    Chen, R.4    Mendoza, A.R.5    Dangel, A.W.6    Carroll, M.C.7    Zipf, W.B.8    Yu, C.Y.9
  • 39
    • 0345636604 scopus 로고    scopus 로고
    • SVA elements are nonautonomous retrotransposons that cause disease in humans
    • 14628287
    • EM Ostertag JL Goodier Y Zhang HH Kazazian Jr 2003 SVA elements are nonautonomous retrotransposons that cause disease in humans Am J Hum Genet 73 1444 1451 14628287
    • (2003) Am J Hum Genet , vol.73 , pp. 1444-1451
    • Ostertag, E.M.1    Goodier, J.L.2    Zhang, Y.3    Kazazian Jr, H.H.4
  • 40
    • 0034917751 scopus 로고    scopus 로고
    • Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses
    • 11435400
    • HS Malik TH Eickbush 2001 Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses Genome Res 11 1187 1197 11435400
    • (2001) Genome Res , vol.11 , pp. 1187-1197
    • Malik, H.S.1    Eickbush, T.H.2
  • 41
    • 0034707216 scopus 로고    scopus 로고
    • Genomic scrap yard: How genomes utilize all that junk
    • 11163962
    • W Makalowski 2000 Genomic scrap yard: how genomes utilize all that junk Gene 259 61 67 11163962
    • (2000) Gene , vol.259 , pp. 61-67
    • Makalowski, W.1
  • 43
    • 33846972640 scopus 로고    scopus 로고
    • Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination
    • 17134851
    • M Song S Boissinot 2007 Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination Gene 390 206 213 17134851
    • (2007) Gene , vol.390 , pp. 206-213
    • Song, M.1    Boissinot, S.2
  • 44
    • 0032478502 scopus 로고    scopus 로고
    • Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease
    • 9533876
    • B Burwinkel MW Kilimann 1998 Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease J Mol Biol 277 513 517 9533876
    • (1998) J Mol Biol , vol.277 , pp. 513-517
    • Burwinkel, B.1    Kilimann, M.W.2
  • 45
    • 0033361022 scopus 로고    scopus 로고
    • LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosis
    • 9915944
    • Y Segal B Peissel A Renieri M de Marchi A Ballabio Y Pei J Zhou 1999 LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosis Am J Hum Genet 64 62 69 9915944
    • (1999) Am J Hum Genet , vol.64 , pp. 62-69
    • Segal, Y.1    Peissel, B.2    Renieri, A.3    De Marchi, M.4    Ballabio, A.5    Pei, Y.6    Zhou, J.7
  • 46
    • 0034641881 scopus 로고    scopus 로고
    • Two long homologous retroviral sequence blocks in proximal Yq11 cause AZFa microdeletions as a result of intrachromosomal recombination events
    • 11030762
    • C Kamp P Hirschmann H Voss K Huellen PH Vogt 2000 Two long homologous retroviral sequence blocks in proximal Yq11 cause AZFa microdeletions as a result of intrachromosomal recombination events Hum Mol Genet 9 2563 2572 11030762
    • (2000) Hum Mol Genet , vol.9 , pp. 2563-2572
    • Kamp, C.1    Hirschmann, P.2    Voss, H.3    Huellen, K.4    Vogt, P.H.5
  • 47
    • 40449139336 scopus 로고    scopus 로고
    • Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health
    • 18256243
    • VP Belancio DJ Hedges P Deininger 2008 Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health Genome Res 18 343 358 18256243
    • (2008) Genome Res , vol.18 , pp. 343-358
    • Belancio, V.P.1    Hedges, D.J.2    Deininger, P.3
  • 51
    • 0034161961 scopus 로고    scopus 로고
    • Transduction of 3′-flanking sequences is common in L1 retrotransposition
    • 10699189
    • JL Goodier EM Ostertag HH Kazazian Jr 2000 Transduction of 3′-flanking sequences is common in L1 retrotransposition Hum Mol Genet 9 653 657 10699189
    • (2000) Hum Mol Genet , vol.9 , pp. 653-657
    • Goodier, J.L.1    Ostertag, E.M.2    Kazazian Jr, H.H.3
  • 52
    • 0342313559 scopus 로고    scopus 로고
    • Frequent human genomic DNA transduction driven by LINE-1 retrotransposition
    • 10779482
    • OK Pickeral W Makalowski MS Boguski JD Boeke 2000 Frequent human genomic DNA transduction driven by LINE-1 retrotransposition Genome Res 10 411 415 10779482
    • (2000) Genome Res , vol.10 , pp. 411-415
    • Pickeral, O.K.1    Makalowski, W.2    Boguski, M.S.3    Boeke, J.D.4
  • 55
    • 0032852328 scopus 로고    scopus 로고
    • Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila
    • 10570991
    • M Long W Wang J Zhang 1999 Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila Gene 238 135 141 10570991
    • (1999) Gene , vol.238 , pp. 135-141
    • Long, M.1    Wang, W.2    Zhang, J.3
  • 56
    • 0033574638 scopus 로고    scopus 로고
    • A second gene encoding the mouse proteasome activator PA28beta subunit is part of a LINE1 element and is driven by a LINE1 promoter
    • 10222192
    • DM Zaiss PM Kloetzel 1999 A second gene encoding the mouse proteasome activator PA28beta subunit is part of a LINE1 element and is driven by a LINE1 promoter J Mol Biol 287 829 835 10222192
    • (1999) J Mol Biol , vol.287 , pp. 829-835
    • Zaiss, D.M.1    Kloetzel, P.M.2
  • 57
    • 0036198598 scopus 로고    scopus 로고
    • Discovery of a functional retrotransposon of the murine phospholipid hydroperoxide glutathione peroxidase: Chromosomal localization and tissue-specific expression pattern
    • 11863368
    • C Boschan A Borchert C Ufer BJ Thiele H Kuhn 2002 Discovery of a functional retrotransposon of the murine phospholipid hydroperoxide glutathione peroxidase: chromosomal localization and tissue-specific expression pattern Genomics 79 387 394 11863368
    • (2002) Genomics , vol.79 , pp. 387-394
    • Boschan, C.1    Borchert, A.2    Ufer, C.3    Thiele, B.J.4    Kuhn, H.5
  • 58
    • 34247874698 scopus 로고    scopus 로고
    • Current topics in genome evolution: Molecular mechanisms of new gene formation
    • 17192808
    • DV Babushok EM Ostertag HH Kazazian Jr 2007 Current topics in genome evolution: molecular mechanisms of new gene formation Cell Mol Life Sci 64 542 554 17192808
    • (2007) Cell Mol Life Sci , vol.64 , pp. 542-554
    • Babushok, D.V.1    Ostertag, E.M.2    Kazazian Jr, H.H.3
  • 59
    • 33644777605 scopus 로고    scopus 로고
    • Evolutionary fate of retroposed gene copies in the human genome
    • 16492757
    • N Vinckenbosch I Dupanloup H Kaessmann 2006 Evolutionary fate of retroposed gene copies in the human genome Proc Natl Acad Sci USA 103 3220 3225 16492757
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 3220-3225
    • Vinckenbosch, N.1    Dupanloup, I.2    Kaessmann, H.3
  • 60
    • 0027180278 scopus 로고
    • Retrovirus variation and reverse transcription: Abnormal strand transfers result in retrovirus genetic variation
    • 7688465
    • HM Temin 1993 Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation Proc Natl Acad Sci USA 90 6900 6903 7688465
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 6900-6903
    • Temin, H.M.1
  • 61
    • 34250174208 scopus 로고    scopus 로고
    • Chimeric retrogenes suggest a role for the nucleolus in LINE amplification
    • 17560999
    • A Buzdin E Gogvadze MH Lebrun 2007 Chimeric retrogenes suggest a role for the nucleolus in LINE amplification FEBS Lett 581 2877 2882 17560999
    • (2007) FEBS Lett , vol.581 , pp. 2877-2882
    • Buzdin, A.1    Gogvadze, E.2    Lebrun, M.H.3
  • 62
    • 36849057744 scopus 로고    scopus 로고
    • Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse transcription
    • 17922896
    • E Gogvadze C Barbisan MH Lebrun A Buzdin 2007 Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse transcription BMC Genomics 8 360 17922896
    • (2007) BMC Genomics , vol.8 , pp. 360
    • Gogvadze, E.1    Barbisan, C.2    Lebrun, M.H.3    Buzdin, A.4
  • 63
    • 23944491177 scopus 로고    scopus 로고
    • Transposition of MINE, a composite retrotransposon, in the avirulence gene ACE1 of the rice blast fungus Magnaporthe grisea
    • 15978851
    • I Fudal HU Bohnert D Tharreau MH Lebrun 2005 Transposition of MINE, a composite retrotransposon, in the avirulence gene ACE1 of the rice blast fungus Magnaporthe grisea Fungal Genet Biol 42 761 772 15978851
    • (2005) Fungal Genet Biol , vol.42 , pp. 761-772
    • Fudal, I.1    Bohnert, H.U.2    Tharreau, D.3    Lebrun, M.H.4
  • 65
    • 23844510228 scopus 로고    scopus 로고
    • Multiple fates of L1 retrotransposition intermediates in cultured human cells
    • 16107723
    • N Gilbert S Lutz TA Morrish JV Moran 2005 Multiple fates of L1 retrotransposition intermediates in cultured human cells Mol Cell Biol 25 7780 7795 16107723
    • (2005) Mol Cell Biol , vol.25 , pp. 7780-7795
    • Gilbert, N.1    Lutz, S.2    Morrish, T.A.3    Moran, J.V.4
  • 67
    • 33745620751 scopus 로고    scopus 로고
    • Functional noncoding sequences derived from SINEs in the mammalian genome
    • 16717141
    • H Nishihara AF Smit N Okada 2006 Functional noncoding sequences derived from SINEs in the mammalian genome Genome Res 16 864 874 16717141
    • (2006) Genome Res , vol.16 , pp. 864-874
    • Nishihara, H.1    Smit, A.F.2    Okada, N.3
  • 68
    • 0030978072 scopus 로고    scopus 로고
    • Recombination creates novel L1 (LINE-1) elements in Rattus norvegicus
    • 9178013
    • BE Hayward M Zavanelli AV Furano 1997 Recombination creates novel L1 (LINE-1) elements in Rattus norvegicus Genetics 146 641 654 9178013
    • (1997) Genetics , vol.146 , pp. 641-654
    • Hayward, B.E.1    Zavanelli, M.2    Furano, A.V.3
  • 69
    • 0033289533 scopus 로고    scopus 로고
    • Genomes were forged by massive bombardments with retroelements and retrosequences
    • 10952214
    • J Brosius 1999 Genomes were forged by massive bombardments with retroelements and retrosequences Genetica 107 209 238 10952214
    • (1999) Genetica , vol.107 , pp. 209-238
    • Brosius, J.1
  • 70
    • 0033631415 scopus 로고    scopus 로고
    • The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons
    • 10697412
    • AV Furano 2000 The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons Prog Nucleic Acid Res Mol Biol 64 255 294 10697412
    • (2000) Prog Nucleic Acid Res Mol Biol , vol.64 , pp. 255-294
    • Furano, A.V.1
  • 71
    • 0141561907 scopus 로고    scopus 로고
    • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
    • 14550626
    • LN van de Lagemaat JR Landry DL Mager P Medstrand 2003 Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions Trends Genet 19 530 536 14550626
    • (2003) Trends Genet , vol.19 , pp. 530-536
    • Van De Lagemaat, L.N.1    Landry, J.R.2    Mager, D.L.3    Medstrand, P.4
  • 72
    • 44449084835 scopus 로고    scopus 로고
    • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    • 18485226
    • N Polavarapu L Marino-Ramirez D Landsman JF McDonald IK Jordan 2008 Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA BMC Genomics 9 226 18485226
    • (2008) BMC Genomics , vol.9 , pp. 226
    • Polavarapu, N.1    Marino-Ramirez, L.2    Landsman, D.3    McDonald, J.F.4    Jordan, I.K.5
  • 73
    • 0036854278 scopus 로고    scopus 로고
    • The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter
    • 12411602
    • JR Landry A Rouhi P Medstrand DL Mager 2002 The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter Mol Biol Evol 19 1934 1942 12411602
    • (2002) Mol Biol Evol , vol.19 , pp. 1934-1942
    • Landry, J.R.1    Rouhi, A.2    Medstrand, P.3    Mager, D.L.4
  • 74
    • 0035910527 scopus 로고    scopus 로고
    • Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans
    • 11054415
    • P Medstrand JR Landry DL Mager 2001 Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans J Biol Chem 276 1896 1903 11054415
    • (2001) J Biol Chem , vol.276 , pp. 1896-1903
    • Medstrand, P.1    Landry, J.R.2    Mager, D.L.3
  • 76
    • 28844480604 scopus 로고    scopus 로고
    • Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: The case of primate beta3GAL-T5
    • 16112824
    • CA Dunn LN van de Lagemaat GJ Baillie DL Mager 2005 Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: the case of primate beta3GAL-T5 Gene 364 2 12 16112824
    • (2005) Gene , vol.364 , pp. 2-12
    • Dunn, C.A.1    Van De Lagemaat, L.N.2    Baillie, G.J.3    Mager, D.L.4
  • 77
    • 33846556612 scopus 로고    scopus 로고
    • Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution
    • 17222062
    • MT Romanish WM Lock LN de Lagemaat CA Dunn DL Mager 2007 Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution PLoS Genet 3 e10 17222062
    • (2007) PLoS Genet , vol.3 , pp. 10
    • Romanish, M.T.1    Lock, W.M.2    De Lagemaat, L.N.3    Dunn, C.A.4    Mager, D.L.5
  • 80
    • 33646934132 scopus 로고    scopus 로고
    • GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats
    • 16698959
    • A Buzdin E Kovalskaya-Alexandrova E Gogvadze E Sverdlov 2006 GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats Nucleic Acids Res 34 e67 16698959
    • (2006) Nucleic Acids Res , vol.34 , pp. 67
    • Buzdin, A.1    Kovalskaya-Alexandrova, E.2    Gogvadze, E.3    Sverdlov, E.4
  • 81
    • 33750356627 scopus 로고    scopus 로고
    • At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription
    • 17041225
    • A Buzdin E Kovalskaya-Alexandrova E Gogvadze E Sverdlov 2006 At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription J Virol 80 10752 10762 17041225
    • (2006) J Virol , vol.80 , pp. 10752-10762
    • Buzdin, A.1    Kovalskaya-Alexandrova, E.2    Gogvadze, E.3    Sverdlov, E.4
  • 82
    • 0027170315 scopus 로고
    • The remarkable evolutionary history of the human amylase genes
    • 7690604
    • MH Meisler CN Ting 1993 The remarkable evolutionary history of the human amylase genes Crit Rev Oral Biol Med 4 503 509 7690604
    • (1993) Crit Rev Oral Biol Med , vol.4 , pp. 503-509
    • Meisler, M.H.1    Ting, C.N.2
  • 83
    • 0032535356 scopus 로고    scopus 로고
    • A long terminal repeat of the human endogenous retrovirus ERV-9 is located in the 5′ boundary area of the human beta-globin locus control region
    • 9878258
    • Q Long C Bengra C Li F Kutlar D Tuan 1998 A long terminal repeat of the human endogenous retrovirus ERV-9 is located in the 5′ boundary area of the human beta-globin locus control region Genomics 54 542 555 9878258
    • (1998) Genomics , vol.54 , pp. 542-555
    • Long, Q.1    Bengra, C.2    Li, C.3    Kutlar, F.4    Tuan, D.5
  • 84
    • 0036170433 scopus 로고    scopus 로고
    • The solitary long terminal repeats of ERV-9 endogenous retrovirus are conserved during primate evolution and possess enhancer activities in embryonic and hematopoietic cells
    • 11836419
    • J Ling W Pi R Bollag S Zeng M Keskintepe H Saliman S Krantz B Whitney D Tuan 2002 The solitary long terminal repeats of ERV-9 endogenous retrovirus are conserved during primate evolution and possess enhancer activities in embryonic and hematopoietic cells J Virol 76 2410 2423 11836419
    • (2002) J Virol , vol.76 , pp. 2410-2423
    • Ling, J.1    Pi, W.2    Bollag, R.3    Zeng, S.4    Keskintepe, M.5    Saliman, H.6    Krantz, S.7    Whitney, B.8    Tuan, D.9
  • 85
    • 0042161841 scopus 로고    scopus 로고
    • The ERV-9 LTR enhancer is not blocked by the HS5 insulator and synthesizes through the HS5 site non-coding, long RNAs that regulate LTR enhancer function
    • 12888519
    • J Ling W Pi X Yu C Bengra Q Long H Jin A Seyfang D Tuan 2003 The ERV-9 LTR enhancer is not blocked by the HS5 insulator and synthesizes through the HS5 site non-coding, long RNAs that regulate LTR enhancer function Nucleic Acids Res 31 4582 4596 12888519
    • (2003) Nucleic Acids Res , vol.31 , pp. 4582-4596
    • Ling, J.1    Pi, W.2    Yu, X.3    Bengra, C.4    Long, Q.5    Jin, H.6    Seyfang, A.7    Tuan, D.8
  • 86
    • 0024026429 scopus 로고
    • A complex androgen-responsive enhancer resides 2 kilobases upstream of the mouse Slp gene
    • 3165490
    • F Loreni J Stavenhagen M Kalff DM Robins 1988 A complex androgen-responsive enhancer resides 2 kilobases upstream of the mouse Slp gene Mol Cell Biol 8 2350 2360 3165490
    • (1988) Mol Cell Biol , vol.8 , pp. 2350-2360
    • Loreni, F.1    Stavenhagen, J.2    Kalff, M.3    Robins, D.M.4
  • 87
    • 0031985152 scopus 로고    scopus 로고
    • Apolipoprotein(a) gene enhancer resides within a LINE element
    • 9422746
    • Z Yang D Boffelli N Boonmark K Schwartz R Lawn 1998 Apolipoprotein(a) gene enhancer resides within a LINE element J Biol Chem 273 891 897 9422746
    • (1998) J Biol Chem , vol.273 , pp. 891-897
    • Yang, Z.1    Boffelli, D.2    Boonmark, N.3    Schwartz, K.4    Lawn, R.5
  • 88
    • 0027379052 scopus 로고
    • Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene
    • 8413295
    • JE Hambor J Mennone ME Coon JH Hanke P Kavathas 1993 Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene Mol Cell Biol 13 7056 7070 8413295
    • (1993) Mol Cell Biol , vol.13 , pp. 7056-7070
    • Hambor, J.E.1    Mennone, J.2    Coon, M.E.3    Hanke, J.H.4    Kavathas, P.5
  • 89
    • 35948981635 scopus 로고    scopus 로고
    • Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene
    • 17922573
    • AM Santangelo FS de Souza LF Franchini VF Bumaschny MJ Low M Rubinstein 2007 Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene PLoS Genet 3 1813 1826 17922573
    • (2007) PLoS Genet , vol.3 , pp. 1813-1826
    • Santangelo, A.M.1    De Souza, F.S.2    Franchini, L.F.3    Bumaschny, V.F.4    Low, M.J.5    Rubinstein, M.6
  • 91
    • 55449113982 scopus 로고    scopus 로고
    • Exon creation and establishment in human genes
    • 18811936
    • A Corvelo E Eyras 2008 Exon creation and establishment in human genes Genome Biol 9 R141 18811936
    • (2008) Genome Biol , vol.9 , pp. 141
    • Corvelo, A.1    Eyras, E.2
  • 93
    • 33646145936 scopus 로고    scopus 로고
    • Do transposable elements really contribute to proteomes?
    • 16569458
    • V Gotea W Makalowski 2006 Do transposable elements really contribute to proteomes? Trends Genet 22 260 267 16569458
    • (2006) Trends Genet , vol.22 , pp. 260-267
    • Gotea, V.1    Makalowski, W.2
  • 95
    • 0036064148 scopus 로고    scopus 로고
    • Alu-containing exons are alternatively spliced
    • 12097342
    • R Sorek G Ast D Graur 2002 Alu-containing exons are alternatively spliced Genome Res 12 1060 1067 12097342
    • (2002) Genome Res , vol.12 , pp. 1060-1067
    • Sorek, R.1    Ast, G.2    Graur, D.3
  • 96
    • 33846694462 scopus 로고    scopus 로고
    • Exonization of Alu-generated splice variants in the survivin gene of human and non-human primates
    • 17204284
    • G Mola E Vela MT Fernandez-Figueras M Isamat AM Munoz-Marmol 2007 Exonization of Alu-generated splice variants in the survivin gene of human and non-human primates J Mol Biol 366 1055 1063 17204284
    • (2007) J Mol Biol , vol.366 , pp. 1055-1063
    • Mola, G.1    Vela, E.2    Fernandez-Figueras, M.T.3    Isamat, M.4    Munoz-Marmol, A.M.5
  • 98
    • 4344651631 scopus 로고    scopus 로고
    • Retroelements and formation of chimeric retrogenes
    • 15316654
    • AA Buzdin 2004 Retroelements and formation of chimeric retrogenes Cell Mol Life Sci 61 2046 2059 15316654
    • (2004) Cell Mol Life Sci , vol.61 , pp. 2046-2059
    • Buzdin, A.A.1
  • 99
    • 0035802397 scopus 로고    scopus 로고
    • Similar integration but different stability of Alus and LINEs in the human genome
    • 11591470
    • A Pavlicek K Jabbari J Paces V Paces JV Hejnar G Bernardi 2001 Similar integration but different stability of Alus and LINEs in the human genome Gene 276 39 45 11591470
    • (2001) Gene , vol.276 , pp. 39-45
    • Pavlicek, A.1    Jabbari, K.2    Paces, J.3    Paces, V.4    Hejnar, J.V.5    Bernardi, G.6
  • 100
    • 39749182717 scopus 로고    scopus 로고
    • The impact of multiple splice sites in human L1 elements
    • 18261861
    • VP Belancio AM Roy-Engel P Deininger 2008 The impact of multiple splice sites in human L1 elements Gene 411 38 45 18261861
    • (2008) Gene , vol.411 , pp. 38-45
    • Belancio, V.P.1    Roy-Engel, A.M.2    Deininger, P.3
  • 101
    • 33846976133 scopus 로고    scopus 로고
    • Functional splice sites in a zebrafish LINE and their influence on zebrafish gene expression
    • 17174483
    • M Tamura M Kajikawa N Okada 2007 Functional splice sites in a zebrafish LINE and their influence on zebrafish gene expression Gene 390 221 231 17174483
    • (2007) Gene , vol.390 , pp. 221-231
    • Tamura, M.1    Kajikawa, M.2    Okada, N.3
  • 102
    • 34548738267 scopus 로고    scopus 로고
    • Infertile Finnish Yorkshire boars carry a full-length LINE-1 retrotransposon within the KPL2 gene
    • 17610085
    • A Sironen J Vilkki C Bendixen B Thomsen 2007 Infertile Finnish Yorkshire boars carry a full-length LINE-1 retrotransposon within the KPL2 gene Mol Genet Genomics 278 385 391 17610085
    • (2007) Mol Genet Genomics , vol.278 , pp. 385-391
    • Sironen, A.1    Vilkki, J.2    Bendixen, C.3    Thomsen, B.4
  • 103
    • 33750460928 scopus 로고    scopus 로고
    • Multiple effects govern endogenous retrovirus survival patterns in human gene introns
    • 17005047
    • LN van de Lagemaat P Medstrand DL Mager 2006 Multiple effects govern endogenous retrovirus survival patterns in human gene introns Genome Biol 7 R86 17005047
    • (2006) Genome Biol , vol.7 , pp. 86
    • Van De Lagemaat, L.N.1    Medstrand, P.2    Mager, D.L.3
  • 104
    • 0034946248 scopus 로고    scopus 로고
    • Alternative splicing of the human VEGFGR-3/FLT4 gene as a consequence of an integrated human endogenous retrovirus
    • 11479678
    • DC Hughes 2001 Alternative splicing of the human VEGFGR-3/FLT4 gene as a consequence of an integrated human endogenous retrovirus J Mol Evol 53 77 79 11479678
    • (2001) J Mol Evol , vol.53 , pp. 77-79
    • Hughes, D.C.1
  • 105
    • 33845315229 scopus 로고    scopus 로고
    • Editor meets silencer: Crosstalk between RNA editing and RNA interference
    • 17139332
    • K Nishikura 2006 Editor meets silencer: crosstalk between RNA editing and RNA interference Nat Rev Mol Cell Biol 7 919 931 17139332
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 919-931
    • Nishikura, K.1
  • 106
    • 12344300804 scopus 로고    scopus 로고
    • Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
    • 15534692
    • A Athanasiadis A Rich S Maas 2004 Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome PLoS Biol 2 e391 15534692
    • (2004) PLoS Biol , vol.2 , pp. 391
    • Athanasiadis, A.1    Rich, A.2    Maas, S.3
  • 107
    • 50649098886 scopus 로고    scopus 로고
    • Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAA-dependent manner
    • 18658125
    • OR Borodulina DA Kramerov 2008 Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAA-dependent manner RNA 14 1865 1873 18658125
    • (2008) RNA , vol.14 , pp. 1865-1873
    • Borodulina, O.R.1    Kramerov, D.A.2
  • 109
    • 0034657363 scopus 로고    scopus 로고
    • HERV-K-T47D-related long terminal repeats mediate polyadenylation of cellular transcripts
    • 10843810
    • C Baust W Seifarth H Germaier R Hehlmann C Leib-Mosch 2000 HERV-K-T47D-related long terminal repeats mediate polyadenylation of cellular transcripts Genomics 66 98 103 10843810
    • (2000) Genomics , vol.66 , pp. 98-103
    • Baust, C.1    Seifarth, W.2    Germaier, H.3    Hehlmann, R.4    Leib-Mosch, C.5
  • 110
    • 0344117666 scopus 로고    scopus 로고
    • HERV-F (XA34) is a full-length human endogenous retrovirus expressed in placental and fetal tissues
    • 10571039
    • C Kjellman HO Sjogren LG Salford B Widegren 1999 HERV-F (XA34) is a full-length human endogenous retrovirus expressed in placental and fetal tissues Gene 239 99 107 10571039
    • (1999) Gene , vol.239 , pp. 99-107
    • Kjellman, C.1    Sjogren, H.O.2    Salford, L.G.3    Widegren, B.4
  • 111
    • 0033180333 scopus 로고    scopus 로고
    • Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3)
    • 10444326
    • DL Mager DG Hunter M Schertzer JD Freeman 1999 Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3) Genomics 59 255 263 10444326
    • (1999) Genomics , vol.59 , pp. 255-263
    • Mager, D.L.1    Hunter, D.G.2    Schertzer, M.3    Freeman, J.D.4
  • 112
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • 15152245
    • JS Han ST Szak JD Boeke 2004 Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes Nature 429 268 274 15152245
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 113
    • 23744454779 scopus 로고    scopus 로고
    • Gene-breaking: A new paradigm for human retrotransposon-mediated gene evolution
    • 16024818
    • SJ Wheelan Y Aizawa JS Han JD Boeke 2005 Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution Genome Res 15 1073 1078 16024818
    • (2005) Genome Res , vol.15 , pp. 1073-1078
    • Wheelan, S.J.1    Aizawa, Y.2    Han, J.S.3    Boeke, J.D.4
  • 114
    • 58449095204 scopus 로고    scopus 로고
    • Using Alu elements as polyadenylation sites: A case of retroposon exaptation
    • 18984903
    • C Chen T Ara D Gautheret 2009 Using Alu elements as polyadenylation sites: a case of retroposon exaptation Mol Biol Evol 26 327 334 18984903
    • (2009) Mol Biol Evol , vol.26 , pp. 327-334
    • Chen, C.1    Ara, T.2    Gautheret, D.3
  • 115
    • 55249096744 scopus 로고    scopus 로고
    • Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes
    • 18757892
    • JY Lee Z Ji B Tian 2008 Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes Nucleic Acids Res 36 5581 5590 18757892
    • (2008) Nucleic Acids Res , vol.36 , pp. 5581-5590
    • Lee, J.Y.1    Ji, Z.2    Tian, B.3
  • 116
    • 33749319983 scopus 로고    scopus 로고
    • The human growth hormone gene contains a silencer embedded within an Alu repeat in the 3′-flanking region
    • 16762973
    • MA Trujillo M Sakagashira NL Eberhardt 2006 The human growth hormone gene contains a silencer embedded within an Alu repeat in the 3′-flanking region Mol Endocrinol 20 2559 2575 16762973
    • (2006) Mol Endocrinol , vol.20 , pp. 2559-2575
    • Trujillo, M.A.1    Sakagashira, M.2    Eberhardt, N.L.3
  • 117
    • 0033585051 scopus 로고    scopus 로고
    • Identification and characterization of a transcriptional silencer upstream of the human BRCA2 gene
    • 10558858
    • C Sharan NM Hamilton AK Parl PK Singh G Chaudhuri 1999 Identification and characterization of a transcriptional silencer upstream of the human BRCA2 gene Biochem Biophys Res Commun 265 285 290 10558858
    • (1999) Biochem Biophys Res Commun , vol.265 , pp. 285-290
    • Sharan, C.1    Hamilton, N.M.2    Parl, A.K.3    Singh, P.K.4    Chaudhuri, G.5
  • 118
    • 0021808695 scopus 로고
    • Nucleotide sequence of the haptoglobin and haptoglobin-related gene pair. the haptoglobin-related gene contains a retrovirus-like element
    • 2987228
    • N Maeda 1985 Nucleotide sequence of the haptoglobin and haptoglobin-related gene pair. The haptoglobin-related gene contains a retrovirus-like element J Biol Chem 260 6698 6709 2987228
    • (1985) J Biol Chem , vol.260 , pp. 6698-6709
    • Maeda, N.1
  • 119
    • 0242352617 scopus 로고    scopus 로고
    • An intronic endogenous retrovirus-like sequence attenuates human haptoglobin-related gene expression in an orientation-dependent manner
    • 14597171
    • S Hatada DJ Grant N Maeda 2003 An intronic endogenous retrovirus-like sequence attenuates human haptoglobin-related gene expression in an orientation-dependent manner Gene 319 55 63 14597171
    • (2003) Gene , vol.319 , pp. 55-63
    • Hatada, S.1    Grant, D.J.2    Maeda, N.3
  • 120
    • 0025597817 scopus 로고
    • Three independent insertions of retrovirus-like sequences in the haptoglobin gene cluster of primates
    • 2177446
    • N Maeda HS Kim 1990 Three independent insertions of retrovirus-like sequences in the haptoglobin gene cluster of primates Genomics 8 671 683 2177446
    • (1990) Genomics , vol.8 , pp. 671-683
    • Maeda, N.1    Kim, H.S.2
  • 121
    • 0036798062 scopus 로고    scopus 로고
    • Retroelement distributions in the human genome: Variations associated with age and proximity to genes
    • 12368240
    • P Medstrand LN van de Lagemaat DL Mager 2002 Retroelement distributions in the human genome: variations associated with age and proximity to genes Genome Res 12 1483 1495 12368240
    • (2002) Genome Res , vol.12 , pp. 1483-1495
    • Medstrand, P.1    Van De Lagemaat, L.N.2    Mager, D.L.3
  • 122
    • 0034724652 scopus 로고    scopus 로고
    • Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region
    • 10788609
    • AN Domansky EP Kopantzev EV Snezhkov YB Lebedev C Leib-Mosch ED Sverdlov 2000 Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region FEBS Lett 472 191 195 10788609
    • (2000) FEBS Lett , vol.472 , pp. 191-195
    • Domansky, A.N.1    Kopantzev, E.P.2    Snezhkov, E.V.3    Lebedev, Y.B.4    Leib-Mosch, C.5    Sverdlov, E.D.6
  • 123
    • 32444436122 scopus 로고    scopus 로고
    • Transcription of two human genes from a bidirectional endogenous retrovirus promoter
    • 16288839
    • CA Dunn MT Romanish LE Gutierrez LN van de Lagemaat DL Mager 2006 Transcription of two human genes from a bidirectional endogenous retrovirus promoter Gene 366 335 342 16288839
    • (2006) Gene , vol.366 , pp. 335-342
    • Dunn, C.A.1    Romanish, M.T.2    Gutierrez, L.E.3    Van De Lagemaat, L.N.4    Mager, D.L.5
  • 125
    • 33746658129 scopus 로고    scopus 로고
    • L1 antisense promoter drives tissue-specific transcription of human genes
    • 16877819
    • K Matlik K Redik M Speek 2006 L1 antisense promoter drives tissue-specific transcription of human genes J Biomed Biotechnol 2006 71753 16877819
    • (2006) J Biomed Biotechnol , vol.2006 , pp. 71753
    • Matlik, K.1    Redik, K.2    Speek, M.3
  • 127
    • 38549133553 scopus 로고    scopus 로고
    • Human cis natural antisense transcripts initiated by transposable elements
    • 18192066
    • AB Conley WJ Miller IK Jordan 2008 Human cis natural antisense transcripts initiated by transposable elements Trends Genet 24 53 56 18192066
    • (2008) Trends Genet , vol.24 , pp. 53-56
    • Conley, A.B.1    Miller, W.J.2    Jordan, I.K.3
  • 128
    • 66149157654 scopus 로고    scopus 로고
    • Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions
    • 19339349
    • E Gogvadze E Stukacheva A Buzdin E Sverdlov 2009 Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions J Virol 83 6098 6105 19339349
    • (2009) J Virol , vol.83 , pp. 6098-6105
    • Gogvadze, E.1    Stukacheva, E.2    Buzdin, A.3    Sverdlov, E.4
  • 129
    • 37249012285 scopus 로고    scopus 로고
    • Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes
    • 18073417
    • K Kashkush V Khasdan 2007 Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes Genetics 177 1975 1985 18073417
    • (2007) Genetics , vol.177 , pp. 1975-1985
    • Kashkush, K.1    Khasdan, V.2
  • 130
    • 19444367079 scopus 로고    scopus 로고
    • Mammalian microRNAs derived from genomic repeats
    • 15922829
    • NR Smalheiser VI Torvik 2005 Mammalian microRNAs derived from genomic repeats Trends Genet 21 322 326 15922829
    • (2005) Trends Genet , vol.21 , pp. 322-326
    • Smalheiser, N.R.1    Torvik, V.I.2
  • 131
    • 62949124206 scopus 로고    scopus 로고
    • The frequent transcriptional readthrough of the tobacco tnt1 retrotransposon and its possible implications for the control of resistance genes
    • 19221683
    • I Hernandez-Pinzon E de Jesus N Santiago JM Casacuberta 2009 The frequent transcriptional readthrough of the tobacco tnt1 retrotransposon and its possible implications for the control of resistance genes J Mol Evol 68 269 278 19221683
    • (2009) J Mol Evol , vol.68 , pp. 269-278
    • Hernandez-Pinzon, I.1    De Jesus, E.2    Santiago, N.3    Casacuberta, J.M.4
  • 132
    • 34250776711 scopus 로고    scopus 로고
    • A family of human microRNA genes from miniature inverted-repeat transposable elements
    • 17301878
    • J Piriyapongsa IK Jordan 2007 A family of human microRNA genes from miniature inverted-repeat transposable elements PLoS ONE 2 e203 17301878
    • (2007) PLoS ONE , vol.2 , pp. 203
    • Piriyapongsa, J.1    Jordan, I.K.2
  • 133
    • 38549135976 scopus 로고    scopus 로고
    • TranspoGene and microTranspoGene: Transposed elements influence on the transcriptome of seven vertebrates and invertebrates
    • 17986453
    • A Levy N Sela G Ast 2008 TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates Nucleic Acids Res 36 D47 D52 17986453
    • (2008) Nucleic Acids Res , vol.36
    • Levy, A.1    Sela, N.2    Ast, G.3
  • 135
    • 33749551652 scopus 로고    scopus 로고
    • Identification, genome mapping, and CTCF binding of potential insulators within the FXYD5-COX7A1 locus of human chromosome 19q13.12
    • 17019650
    • SB Akopov VM Ruda VV Batrak AS Vetchinova IP Chernov LG Nikolaev J Bode ED Sverdlov 2006 Identification, genome mapping, and CTCF binding of potential insulators within the FXYD5-COX7A1 locus of human chromosome 19q13.12 Mamm Genome 17 1042 1049 17019650
    • (2006) Mamm Genome , vol.17 , pp. 1042-1049
    • Akopov, S.B.1    Ruda, V.M.2    Batrak, V.V.3    Vetchinova, A.S.4    Chernov, I.P.5    Nikolaev, L.G.6    Bode, J.7    Sverdlov, E.D.8
  • 136
    • 21044445780 scopus 로고    scopus 로고
    • Large-scale identification and mapping of nuclear matrix-attachment regions in the distal imprinted domain of mouse chromosome 7
    • 15871462
    • W Purbowasito C Suda T Yokomine M Zubair T Sado K Tsutsui H Sasaki 2004 Large-scale identification and mapping of nuclear matrix-attachment regions in the distal imprinted domain of mouse chromosome 7 DNA Res 11 391 407 15871462
    • (2004) DNA Res , vol.11 , pp. 391-407
    • Purbowasito, W.1    Suda, C.2    Yokomine, T.3    Zubair, M.4    Sado, T.5    Tsutsui, K.6    Sasaki, H.7
  • 137
    • 0027296569 scopus 로고
    • Distance-independent inactivation of an enhancer by the suppressor of Hairy-wing DNA-binding protein of Drosophila
    • D Dorsett 1993 Distance-independent inactivation of an enhancer by the suppressor of Hairy-wing DNA-binding protein of Drosophila Genetics 134 1135 1144 8375652 (Pubitemid 23220035)
    • (1993) Genetics , vol.134 , Issue.4 , pp. 1135-1144
    • Dorsett, D.1
  • 138
    • 0032760813 scopus 로고    scopus 로고
    • Regulatory changes as a consequence of transposon insertion
    • 10570460
    • L Girard M Freeling 1999 Regulatory changes as a consequence of transposon insertion Dev Genet 25 291 296 10570460
    • (1999) Dev Genet , vol.25 , pp. 291-296
    • Girard, L.1    Freeling, M.2
  • 139
    • 58149170190 scopus 로고    scopus 로고
    • Study of functional interaction between three copies of the insulator from the MDG4 transposable element in the model system of the miniwhite gene of Drosophila melanogaster
    • 18853781
    • MV Kostyuchenko EE Savitskaya IA Volkov AK Golovnin PG Georgiev 2008 Study of functional interaction between three copies of the insulator from the MDG4 transposable element in the model system of the miniwhite gene of Drosophila melanogaster Dokl Biochem Biophys 421 239 243 18853781
    • (2008) Dokl Biochem Biophys , vol.421 , pp. 239-243
    • Kostyuchenko, M.V.1    Savitskaya, E.E.2    Volkov, I.A.3    Golovnin, A.K.4    Georgiev, P.G.5
  • 140
    • 0035878327 scopus 로고    scopus 로고
    • Repetitive elements in the 5′ untranslated region of a human zinc-finger gene modulate transcription and translation efficiency
    • 11549323
    • JR Landry P Medstrand DL Mager 2001 Repetitive elements in the 5′ untranslated region of a human zinc-finger gene modulate transcription and translation efficiency Genomics 76 110 116 11549323
    • (2001) Genomics , vol.76 , pp. 110-116
    • Landry, J.R.1    Medstrand, P.2    Mager, D.L.3
  • 141
    • 41549104968 scopus 로고    scopus 로고
    • Can ID repetitive elements serve as cis-acting dendritic targeting elements? An in vivo study
    • 17896001
    • T Khanam CA Raabe M Kiefmann S Handel BV Skryabin J Brosius 2007 Can ID repetitive elements serve as cis-acting dendritic targeting elements? An in vivo study PLoS ONE 2 e961 17896001
    • (2007) PLoS ONE , vol.2 , pp. 961
    • Khanam, T.1    Raabe, C.A.2    Kiefmann, M.3    Handel, S.4    Skryabin, B.V.5    Brosius, J.6
  • 142
    • 0345501598 scopus 로고
    • DNA modification of a maize transposable element correlates with loss of activity
    • 3006070
    • VL Chandler V Walbot 1986 DNA modification of a maize transposable element correlates with loss of activity Proc Natl Acad Sci USA 83 1767 1771 3006070
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 1767-1771
    • Chandler, V.L.1    Walbot, V.2
  • 143
    • 44349158512 scopus 로고    scopus 로고
    • Epigenetic interactions between transposons and genes: Lessons from plants
    • 18339541
    • C Weil R Martienssen 2008 Epigenetic interactions between transposons and genes: lessons from plants Curr Opin Genet Dev 18 188 192 18339541
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 188-192
    • Weil, C.1    Martienssen, R.2
  • 144
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • 9260521
    • JA Yoder CP Walsh TH Bestor 1997 Cytosine methylation and the ecology of intragenomic parasites Trends Genet 13 335 340 9260521
    • (1997) Trends Genet , vol.13 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3
  • 146
    • 0034094820 scopus 로고    scopus 로고
    • SINE retroposons can be used in vivo as nucleation centers for de novo methylation
    • 10779333
    • P Arnaud C Goubely T Pelissier JM Deragon 2000 SINE retroposons can be used in vivo as nucleation centers for de novo methylation Mol Cell Biol 20 3434 3441 10779333
    • (2000) Mol Cell Biol , vol.20 , pp. 3434-3441
    • Arnaud, P.1    Goubely, C.2    Pelissier, T.3    Deragon, J.M.4
  • 147
    • 0030868694 scopus 로고    scopus 로고
    • Mapping patterns of CpG island methylation in normal and neoplastic cells implicates both upstream and downstream regions in de novo methylation
    • 9268383
    • JR Graff JG Herman S Myohanen SB Baylin PM Vertino 1997 Mapping patterns of CpG island methylation in normal and neoplastic cells implicates both upstream and downstream regions in de novo methylation J Biol Chem 272 22322 22329 9268383
    • (1997) J Biol Chem , vol.272 , pp. 22322-22329
    • Graff, J.R.1    Herman, J.G.2    Myohanen, S.3    Baylin, S.B.4    Vertino, P.M.5
  • 148
    • 33646103928 scopus 로고    scopus 로고
    • Do LINEs have a role in X-chromosome inactivation?
    • 16877818
    • MF Lyon 2006 Do LINEs have a role in X-chromosome inactivation? J Biomed Biotechnol 2006 59746 16877818
    • (2006) J Biomed Biotechnol , vol.2006 , pp. 59746
    • Lyon, M.F.1
  • 149
    • 39949083375 scopus 로고    scopus 로고
    • Conserved themes in small-RNA-mediated transposon control
    • 18282709
    • A Girard GJ Hannon 2008 Conserved themes in small-RNA-mediated transposon control Trends Cell Biol 18 136 148 18282709
    • (2008) Trends Cell Biol , vol.18 , pp. 136-148
    • Girard, A.1    Hannon, G.J.2
  • 150
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • 17363976
    • RK Slotkin R Martienssen 2007 Transposable elements and the epigenetic regulation of the genome Nat Rev Genet 8 272 285 17363976
    • (2007) Nat Rev Genet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 151
    • 38849167412 scopus 로고    scopus 로고
    • Biogenesis and germline functions of piRNAs
    • 18032451
    • C Klattenhoff W Theurkauf 2008 Biogenesis and germline functions of piRNAs Development 135 3 9 18032451
    • (2008) Development , vol.135 , pp. 3-9
    • Klattenhoff, C.1    Theurkauf, W.2
  • 154
    • 33748577987 scopus 로고    scopus 로고
    • Alu elements within human mRNAs are probable microRNA targets
    • 16914224
    • NR Smalheiser VI Torvik 2006 Alu elements within human mRNAs are probable microRNA targets Trends Genet 22 532 536 16914224
    • (2006) Trends Genet , vol.22 , pp. 532-536
    • Smalheiser, N.R.1    Torvik, V.I.2
  • 155
    • 13944266785 scopus 로고    scopus 로고
    • A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon
    • 15701756
    • HS Soifer A Zaragoza M Peyvan MA Behlke JJ Rossi 2005 A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon Nucleic Acids Res 33 846 856 15701756
    • (2005) Nucleic Acids Res , vol.33 , pp. 846-856
    • Soifer, H.S.1    Zaragoza, A.2    Peyvan, M.3    Behlke, M.A.4    Rossi, J.J.5
  • 156
    • 33748363713 scopus 로고    scopus 로고
    • L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells
    • 16936727
    • N Yang HH Kazazian Jr 2006 L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells Nat Struct Mol Biol 13 763 771 16936727
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 763-771
    • Yang, N.1    Kazazian Jr, H.H.2
  • 157
    • 34250870205 scopus 로고    scopus 로고
    • APOBEC3 proteins: Major players in intracellular defence against LINE-1-mediated retrotransposition
    • 17511669
    • GG Schumann 2007 APOBEC3 proteins: major players in intracellular defence against LINE-1-mediated retrotransposition Biochem Soc Trans 35 637 642 17511669
    • (2007) Biochem Soc Trans , vol.35 , pp. 637-642
    • Schumann, G.G.1


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