메뉴 건너뛰기




Volumn 72, Issue 1, 2011, Pages 95-111

Applying in silico tools to the discovery of novel CXCR4 inhibitors

Author keywords

CXCR4 CCR5 inhibitors; De novo design; Docking; GPCRs; HIV; Homology modelling; Pharmacophore; QSAR; Shape matching; Similarity search; Virtual screening

Indexed keywords

CHEMOKINE RECEPTOR CXCR4; CHEMOKINE RECEPTOR CXCR4 ANTAGONIST; CYCLAM AMINE DERIVATIVE; DIAMINE DERIVATIVE; DIPICOLIL AMINE ZINC COMPLEX; G PROTEIN COUPLED RECEPTOR; KRH 1636; MACROCYCLIC COMPOUND; PEPTIDE DERIVATIVE; PEPTIDOMIMETIC AGENT; PHENANTHROLINE DERIVATIVE; PLERIXAFOR; PSEUDOTHIOUREA DERIVATIVE; PYRIMIDINE DERIVATIVE; TETRAHYDROQUINOLINAMINE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 79951801947     PISSN: 02724391     EISSN: 10982299     Source Type: Journal    
DOI: 10.1002/ddr.20406     Document Type: Review
Times cited : (4)

References (115)
  • 1
    • 0028155689 scopus 로고
    • A new method for predicting binding affinity in computer-aided drug design
    • Åqvist J, Medina C, Samuelsson JE. 1994. A new method for predicting binding affinity in computer-aided drug design. Protein Eng 7:385-391. (Pubitemid 24063137)
    • (1994) Protein Engineering , vol.7 , Issue.3 , pp. 385-391
    • Aqvist, J.1    Medina, C.2    Samuelsson, J.-E.3
  • 2
    • 2542542158 scopus 로고    scopus 로고
    • 4 receptor ligands: Synthesis and 3D-QSAR model
    • DOI 10.1021/jm031111m
    • Audouze K, Nielsen EO, Peters D. 2004. New series of morpholine and 1,4-oxazepane derivatives as dopamine D-4 receptor ligands: synthesis and 3D-QSAR model. J Med Chem 47:3089-3104. (Pubitemid 38702704)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.12 , pp. 3089-3104
    • Audouze, K.1    Nielsen, E.O.2    Peters, D.3
  • 3
    • 20844460158 scopus 로고    scopus 로고
    • New drug targets for HIV
    • Bean P. 2005. New drug targets for HIV. Clin Infect Dis 41:96-100.
    • (2005) Clin Infect Dis , vol.41 , pp. 96-100
    • Bean, P.1
  • 4
    • 0034649618 scopus 로고    scopus 로고
    • Protein-based virtual screening of chemical databases. 1. Evaluation of different docking/scoring combinations
    • DOI 10.1021/jm001044l
    • Bissantz C, Folkers G, Rognan D. 2000. Protein-based virtual screening of chemical databases. 1. Evaluation of different docking/scoring combinations. J Med Chem 43:4759-4767. (Pubitemid 32002687)
    • (2000) Journal of Medicinal Chemistry , vol.43 , Issue.25 , pp. 4759-4767
    • Bissantz, C.1    Folkers, G.2    Rognan, D.3
  • 5
    • 0037235663 scopus 로고    scopus 로고
    • Protein-based virtual screening of chemical databases. II. Are homology models of G-protein coupled receptors suitable targets?
    • Bissantz C, Bernard P, Hibert M, Rognan D. 2003. Protein-based virtual screening of chemical databases. II. Are homology models of G-protein coupled receptors suitable targets? Proteins 50:5-25.
    • (2003) Proteins , vol.50 , pp. 5-25
    • Bissantz, C.1    Bernard, P.2    Hibert, M.3    Rognan, D.4
  • 7
    • 0034604709 scopus 로고    scopus 로고
    • Identification of residues of CXCR4 critical for human immunodeficiency virus coreceptor and chemokine receptor
    • DOI 10.1074/jbc.M000776200
    • Brelot A, Heveker N, Montes M, Alizon M. 2000. Identification of residues of CXCR4 critical for human immunodeficiency virus coreceptor and chemokine receptor activities. J Biol Chem 275: 23736-23744. (Pubitemid 30624660)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.31 , pp. 23736-23744
    • Brelot, A.1    Heveker, N.2    Montes, M.3    Alizon, M.4
  • 8
    • 0033598379 scopus 로고    scopus 로고
    • Synthesis and structure-activity relationships of phenylenebis(methylene) -linked bis-azamacrocycles that inhibit HIV-1 and HIV- 2 replication by antagonism of the chemokine receptor CXCR4
    • DOI 10.1021/jm990211i
    • Bridger GJ, Skerlj RT, Padmanabhan S, Martellucci SA, Henson GW, Struyf S, Witvrouw M, Schols D, De Clercq E. 1999. Synthesis and structure-activity relationships of phenylenebis (methylene)-linked bis-azamacrocycles that inhibit HIV-1 and HIV-2 replication by antagonism of the chemokine receptor CXCR4. J Med Chem 42:3971-3981. (Pubitemid 29453477)
    • (1999) Journal of Medicinal Chemistry , vol.42 , Issue.19 , pp. 3971-3981
    • Bridger, G.J.1    Skerlj, R.T.2    Padmanabhan, S.3    Martellucci, S.A.4    Henson, G.W.5    Struyf, S.6    Witvrouw, M.7    Schols, D.8    De, C.E.9
  • 15
    • 12144291706 scopus 로고    scopus 로고
    • Molecular modelling studies on the ORL1-receptor and ORL1-agonists
    • DOI 10.1023/B:JCAM.0000017491.97244.69
    • Broer BM, Gurrath M, Holtje HD. 2003. Molecular modeling studies on the ORL1-receptor and ORL1-agonists. J Comp-Aided Mol Des 17:739-754. (Pubitemid 38418286)
    • (2003) Journal of Computer-Aided Molecular Design , vol.17 , Issue.11 , pp. 739-754
    • Broer, B.M.1    Gurrath, M.2    Holtje, H.-D.3
  • 18
    • 0742269481 scopus 로고    scopus 로고
    • Automated docking of highly flexible ligands by genetic algorithms: A critical assessment
    • Cecchini M, Kolb P, Majeux N, Caflisch A. 2004. Automated docking of highly flexible ligands by genetic algorithms: a critical assessment. J Comput Chem 25:412-422.
    • (2004) J Comput Chem , vol.25 , pp. 412-422
    • Cecchini, M.1    Kolb, P.2    Majeux, N.3    Caflisch, A.4
  • 19
    • 0033576680 scopus 로고    scopus 로고
    • Consensus scoring: A method for obtaining improved hit rates from docking databases of three-dimensional structures into proteins
    • DOI 10.1021/jm990352k
    • Charifson PS, Corkery JJ, Murcko MA, Walters PW. 1999. Consensus scoring: a method for obtaining improved hit rates from docking databases of three-dimensional structures into proteins. J Med Chem 42:5100-5109. (Pubitemid 30020261)
    • (1999) Journal of Medicinal Chemistry , vol.42 , Issue.25 , pp. 5100-5109
    • Charifson, P.S.1    Corkery, J.J.2    Murcko, M.A.3    Walters, W.P.4
  • 21
    • 79951802312 scopus 로고    scopus 로고
    • ClinicalTrials.gov. United States National Library of Medicine National Institutes of Health, Health & Human Services
    • ClinicalTrials.gov. 2008. United States National Library of Medicine National Institutes of Health, Health & Human Services. http:// clinicaltrials.gov/
    • (2008)
  • 22
    • 34250029187 scopus 로고    scopus 로고
    • Design and synthesis of all diastereomers of cyclic pseudo-dipeptides as mimics of cyclic CXCR4 pentapeptide antagonists
    • DOI 10.1039/b702649h
    • Cluzeau J, Oishi S, Ohno H, et al. 2007. Design and synthesis of all diastereomers of cyclic pseudo-dipeptides as mimics of cyclic CXCR4 pentapeptide antagonists. Org Biomol Chem 5: 1915-1923. (Pubitemid 46884113)
    • (2007) Organic and Biomolecular Chemistry , vol.5 , Issue.12 , pp. 1915-1923
    • Cluzeau, J.1    Oishi, S.2    Ohno, H.3    Wang, Z.4    Evans, B.5    Peiper, S.C.6    Fujii, N.7
  • 24
    • 0023751431 scopus 로고
    • Comparative molecular field analysis (CoMFA). I. Effect of shape on binding of steroids to carrier proteins
    • Cramer RD, Patterson DE, Bunce JD. 1988. Comparative molecular field analysis (CoMFA). I. Effect of shape on binding of steroids to carrier proteins. J Am Chem Soc 110:5959-5967.
    • (1988) J Am Chem Soc , vol.110 , pp. 5959-5967
    • Cramer, R.D.1    Patterson, D.E.2    Bunce, J.D.3
  • 25
    • 0034062515 scopus 로고    scopus 로고
    • Inhibition of HIV infection by bicyclams, highly potent and specific CXCR4 antagonists
    • De Clercq E. 2000. Inhibition of HIV infection by bicyclams, highly potent and specific CXCR4 antagonists. Mol Pharmacol 57:833-839. (Pubitemid 30253364)
    • (2000) Molecular Pharmacology , vol.57 , Issue.5 , pp. 833-839
    • De, C.E.1
  • 26
    • 18844446685 scopus 로고    scopus 로고
    • Emerging anti-HIV drugs
    • DOI 10.1517/14728214.10.2.241
    • De Clercq E. 2005. Emerging anti-HIV drugs. Expert Opin Emerg Drugs 10:241-274. (Pubitemid 40695127)
    • (2005) Expert Opinion on Emerging Drugs , vol.10 , Issue.2 , pp. 241-274
    • De, C.E.1
  • 27
    • 2542514671 scopus 로고    scopus 로고
    • Paradigms for computational nucleic acid design
    • DOI 10.1093/nar/gkh291
    • Dirks RM, Lin M, Winfree E, Pierce NA. 2004. Paradigms for computational nucleic acid design. Nucleic Acids Res 32:1392-1403. (Pubitemid 38854740)
    • (2004) Nucleic Acids Research , vol.32 , Issue.4 , pp. 1392-1403
    • Dirks, R.M.1    Lin, M.2    Winfree, E.3    Pierce, N.A.4
  • 28
  • 29
    • 0347361642 scopus 로고    scopus 로고
    • Lessons in Molecular Recognition: The Effects of Ligand and Protein Flexibility on Molecular Docking Accuracy
    • DOI 10.1021/jm030209y
    • Erickson JA, Jalaie M, Robertson DH, Lewis RA, Vieth M. 2004. Lessons in molecular recognition: the effects of ligand and protein flexibility on molecular docking accuracy. J Med Chem 47: 45-55. (Pubitemid 38040489)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.1 , pp. 45-55
    • Erickson, J.A.1    Jalaie, M.2    Robertson, D.H.3    Lewis, R.A.4    Vieth, M.5
  • 31
    • 0347123444 scopus 로고    scopus 로고
    • Ligand-Supported Homology Modeling of G-Protein-Coupled Receptor Sites: Models Sufficient for Successful Virtual Screening
    • DOI 10.1002/anie.200352776
    • Evers A, Klebe G. 2003. Ligand-supported homology modeling of G-protein-coupled receptor sites: models sufficient for successful virtual screening. Angew Chem Int Ed Engl 43:248-251. (Pubitemid 38082116)
    • (2004) Angewandte Chemie - International Edition , vol.43 , Issue.2 , pp. 248-251
    • Evers, A.1    Klebe, G.2
  • 32
    • 0242301182 scopus 로고    scopus 로고
    • Ligand-supported homology modelling of protein binding-sites using knowledge-based potentials
    • DOI 10.1016/j.jmb.2003.09.032
    • Evers A, Gohlke H, Klebe G. 2003. Ligand-supported homology modelling of protein binding-sites using knowledge-based potentials. J Mol Biol 334:327-345. (Pubitemid 37361090)
    • (2003) Journal of Molecular Biology , vol.334 , Issue.2 , pp. 327-345
    • Evers, A.1    Gohlke, H.2    Klebe, G.3
  • 33
    • 23944454816 scopus 로고    scopus 로고
    • Virtual screening of biogenic amine-binding G-protein coupled receptors: Comparative evaluation of protein- And ligand-based virtual screening protocols
    • DOI 10.1021/jm050090o
    • Evers A, Hessler G, Matter H, Klabunde T. 2005. Virtual screening of biogenic amine-binding G-protein coupled receptors: comparative evaluation of protein- and ligand-based virtual screening protocols. J Med Chem 48:5448-5465. (Pubitemid 41209243)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.17 , pp. 5448-5465
    • Evers, A.1    Hessler, G.2    Matter, H.3    Klabunde, T.4
  • 35
    • 2342514226 scopus 로고    scopus 로고
    • Guided docking approaches to structure-based design and screening
    • DOI 10.2174/1568026043451104
    • Fradera X, Mestres J. 2004. Guided docking approaches to structure-based design and screening. Curr Top Med Chem 4:687-700. (Pubitemid 38842585)
    • (2004) Current Topics in Medicinal Chemistry , vol.4 , Issue.7 , pp. 687-700
    • Fradera, X.1    Mestres, J.2
  • 36
    • 79951806357 scopus 로고
    • Similarity concepts for the planning of organic reactions and synthesis
    • Gasteiger J, Ihlenfeldt WD, Fick R, Rose JR. 1994a. Similarity concepts for the planning of organic reactions and synthesis. J Chem Inf Comput Sci 15:793-813.
    • (1994) J Chem Inf Comput Sci , vol.15 , pp. 793-813
    • Gasteiger, J.1    Ihlenfeldt, W.D.2    Fick, R.3    Rose, J.R.4
  • 38
    • 0035957911 scopus 로고    scopus 로고
    • Molecular interactions of cyclam and bicyclam non-peptide antagonists with the CXCR4 chemokine receptor
    • Gerlach LO, Skerlj RT, Bridger GJ, Schwartz TW. 2001. Molecular interactions of cyclam and bicyclam non-peptide antagonists with the CXCR4 chemokine receptor. J Biol Chem 276:14153-14160.
    • (2001) J Biol Chem , vol.276 , pp. 14153-14160
    • Gerlach, L.O.1    Skerlj, R.T.2    Bridger, G.J.3    Schwartz, T.W.4
  • 40
    • 0038544571 scopus 로고    scopus 로고
    • Analysis and optimization of structure-based virtual screening protocols (1): Exploration of ligand conformational sampling techniques
    • DOI 10.1016/S1093-3263(03)00123-2
    • Good AC, Cheney DL. 2003. Analysis and optimization of structure-based virtual screening protocols (1): exploration of ligand conformational sampling techniques. J Mol Graphics Model 22:23-30. (Pubitemid 36694492)
    • (2003) Journal of Molecular Graphics and Modelling , vol.22 , Issue.1 , pp. 23-30
    • Good, A.C.1    Cheney, D.L.2
  • 41
    • 0021871375 scopus 로고
    • A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
    • DOI 10.1021/jm00145a002
    • Goodford PJ. 1985. A computational procedure for determining energetically favorable binding sites on biologically important macromolecules. J Med Chem 28:849-857. (Pubitemid 15012490)
    • (1985) Journal of Medicinal Chemistry , vol.28 , Issue.7 , pp. 849-857
    • Goodford, P.J.1
  • 42
    • 0026331401 scopus 로고
    • Comparative molecular field analysis on a set of muscarinic agonists
    • Greco G, Novellino E, Silipo C, Vittoria A. 1991. Comparative molecular field analysis on a set of muscarinic agonists. Quant Struct-Act Relat 10:289-299.
    • (1991) Quant Struct-Act Relat , vol.10 , pp. 289-299
    • Greco, G.1    Novellino, E.2    Silipo, C.3    Vittoria, A.4
  • 43
    • 0037436333 scopus 로고    scopus 로고
    • Utilising structural knowledge in drug design strategies: Applications using relibase
    • DOI 10.1016/S0022-2836(02)01409-2
    • Gunther J, Bergner A, Hendlich M, Klebe G. 2003. Utilising structural knowledge in drug design strategies: applications using Relibase. J Mol Biol 326:621-636. (Pubitemid 36279353)
    • (2003) Journal of Molecular Biology , vol.326 , Issue.2 , pp. 621-636
    • Gunther, J.1    Bergner, A.2    Hendlich, M.3    Klebe, G.4
  • 44
    • 0034081944 scopus 로고    scopus 로고
    • Evaluation of docking/scoring approaches: A comparative study based on MMP3 inhibitors
    • DOI 10.1023/A:1008137707965
    • Ha S, Andreani R, Robbins A, Muegge I. 2000. Evaluation of docking/scoring approaches: a comparative study based on MMP3 inhibitors. J Comput Aided Mol Des 14:435-448. (Pubitemid 30386819)
    • (2000) Journal of Computer-Aided Molecular Design , vol.14 , Issue.5 , pp. 435-448
    • Ha, S.1    Andreani, R.2    Robbins, A.3    Muegge, I.4
  • 46
    • 0036084259 scopus 로고    scopus 로고
    • Efficient docking of peptides to proteins without prior knowledge of the binding site
    • Hetényi C, Van der Spoel D. 2002. Efficient docking of peptides to proteins without prior knowledge of the binding site. Prot Sci 11: 11729-11737.
    • (2002) Prot Sci , vol.11 , pp. 11729-11737
    • Hetényi, C.1    Van Der Spoel, D.2
  • 51
    • 56749103466 scopus 로고    scopus 로고
    • The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist
    • Jaakola V, Griffith MT, HansonMA, Cherezov V, Chien EYT, Lane JR, et al. 2008. The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist. Science 322:1211-1217.
    • (2008) Science , vol.322 , pp. 1211-1217
    • Jaakola, V.1    Griffith, M.T.2    Hanson, M.A.3    Cherezo, V.4    Chien, E.Y.T.5    Lane, J.R.6
  • 53
    • 33846693375 scopus 로고    scopus 로고
    • Receptor-based QSAR studies of non-peptide human oxytocin receptor antagonists
    • DOI 10.1016/j.jmgm.2006.05.010, PII S1093326306000970
    • Jojart B, Marki A. 2007. Receptor-based QSAR studies of nonpeptide human oxytocin receptor antagonists. J Mol Graph Model 25:711-720. (Pubitemid 46188548)
    • (2007) Journal of Molecular Graphics and Modelling , vol.25 , Issue.5 , pp. 711-720
    • Jojart, B.1    Marki, A.2
  • 56
    • 0037020329 scopus 로고    scopus 로고
    • Drug design strategies for targeting G-protein-coupled receptors
    • DOI 10.1002/1439-7633(20021004)3:10<928::AID-CBIC928>3.0.CO;2-5
    • Klabunde T, Hessler G. 2002. Drug design strategies for targeting G-protein-coupled receptors. Chem Biochem 3:928-944. (Pubitemid 35189597)
    • (2002) ChemBioChem , vol.3 , Issue.10 , pp. 928-944
    • Klabunde, T.1    Hessler, G.2
  • 57
    • 77953127571 scopus 로고    scopus 로고
    • Alvarez JC, Shoichet B, editors Boca Raton: CRC Press
    • Klebe G. 2005. In: Alvarez JC, Shoichet B, editors. Virtual screening in drug discovery. Boca Raton: CRC Press. p 3-24.
    • (2005) Virtual Screening in Drug Discovery , pp. 3-24
    • Klebe, G.1
  • 58
    • 0027944195 scopus 로고
    • Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity
    • Klebe G, Abraham U, Mietzner T. 1994. Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity. J Med Chem 37:4130.
    • (1994) J Med Chem , vol.37 , pp. 4130
    • Klebe, G.1    Abraham, U.2    Mietzner, T.3
  • 59
    • 40849098660 scopus 로고    scopus 로고
    • Molecular interactions of CCR5 with major classes of small-molecule anti-HIV CCR5 antagonists
    • DOI 10.1124/mol.107.042101
    • Kondru R, Zhang J, Ji C, Mirzadegan T, Rotstein D, Sankuratri S, et al. 2008. Molecular interactions of CCR5 with major classes of small molecule anti-HIV CCR5 antagonists. Mol Pharmacol 73: 789-800. (Pubitemid 351397884)
    • (2008) Molecular Pharmacology , vol.73 , Issue.3 , pp. 789-800
    • Kondru, R.1    Zhang, J.2    Ji, C.3    Mirzadegan, T.4    Rotstein, D.5    Sankuratri, S.6    Dioszegi, M.7
  • 60
    • 67649412864 scopus 로고    scopus 로고
    • Novel nitrogenous compounds and use thereof
    • Kureha Corporation US20040254221. Tokyo, Japan
    • Kureha Corporation. 2004. Novel nitrogenous compounds and use thereof. US20040254221. Tokyo, Japan.
    • (2004)
  • 63
  • 64
    • 19944429228 scopus 로고    scopus 로고
    • 3 adenosine receptor antagonists: Pyrazolo[4,3-e]1,2,4-triazolo[1,5-c]pyrimidine derivatives as a key study
    • DOI 10.1021/jm049662f
    • Moro S, Braiuca P, Deflorian F, Ferrari C, Pastorin G, Cacciari B, Baraldi PG, Varani K, Borea PA, Spalluto G. 2005. Combined target-based and ligand-based drug design approach as a tool to define a novel 3D-pharmacophore model of human A3 adenosine receptor antagonists:pyrazolo[4,3-e]1,2,4- triazolo[1,5-c]pyrimidine derivatives as a key study. J Med Chem 48:152-162. (Pubitemid 40105256)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.1 , pp. 152-162
    • Moro, S.1    Braiuca, P.2    Deflorian, F.3    Ferrari, C.4    Pastorin, G.5    Cacciari, B.6    Baraldi, P.G.7    Varani, K.8    Borea, P.A.9    Spalluto, G.10
  • 65
    • 33645985492 scopus 로고    scopus 로고
    • Novel strategies for the design of new potent and selective human A3 receptor antagonists: An update
    • Moro S, Deflorian F, Bacilieri M, Spalluto G. 2006. Novel strategies for the design of new potent and selective human A3 receptor antagonists: an update. Curr Med Chem 13:639-645.
    • (2006) Curr Med Chem , vol.13 , pp. 639-645
    • Moro, S.1    Deflorian, F.2    Bacilieri, M.3    Spalluto, G.4
  • 69
    • 0031491262 scopus 로고    scopus 로고
    • Recent advances in ligand design methods
    • Lipkowitz KB, Boyd DB, editors. New York: Wiley-VCH
    • Murcko MA. 1997. Recent advances in ligand design methods. In: Lipkowitz KB, Boyd DB, editors. Reviews in computational chemistry. Vol. 11, New York: Wiley-VCH. p 1-66.
    • (1997) Reviews in Computational Chemistry , vol.11 , pp. 1-66
    • Murcko, M.A.1
  • 70
    • 58849094130 scopus 로고    scopus 로고
    • Topology of class A G protein-coupled receptors: Insights gained from crystal structures of rhodopsins, adrenergic and adenosine receptors
    • Mustafi D, Palczewski K. 2009. Topology of class A G protein-coupled receptors: insights gained from crystal structures of rhodopsins, adrenergic and adenosine receptors. Mol Pharmacol 75:1-12.
    • (2009) Mol Pharmacol , vol.75 , pp. 1-12
    • Mustafi, D.1    Palczewski, K.2
  • 71
    • 67649405794 scopus 로고    scopus 로고
    • Isothiourea derivatives
    • Novartis. US20070161618. Basel, Switzerland
    • Novartis. 2007. Isothiourea derivatives. US20070161618. Basel, Switzerland.
    • (2007)
  • 75
    • 47049130668 scopus 로고    scopus 로고
    • Crystal structure of the ligand-free G-protein-coupled receptor opsin
    • DOI 10.1038/nature07063, PII NATURE07063
    • Park JH, Scheerer P, Hofmann KP, Choe H, Ernst OP. 2008. Crystal structure of the ligand-free G-protein-coupled receptor opsin. Nature 454:183-187. (Pubitemid 351969893)
    • (2008) Nature , vol.454 , Issue.7201 , pp. 183-187
    • Park, J.H.1    Scheerer, P.2    Hofmann, K.P.3    Choe, H.-W.4    Ernst, O.P.5
  • 76
    • 79951792830 scopus 로고    scopus 로고
    • PhD Thesis. Universitat Ramon Llull (Barcelona, Spain)
    • Pérez-Nueno VI. 2009. PhD Thesis. Universitat Ramon Llull (Barcelona, Spain), http://www.tesisenxarxa.net/TDX-0526109-130043/index.html
    • (2009)
    • Pérez-Nueno, V.I.1
  • 77
    • 42149089443 scopus 로고    scopus 로고
    • Comparison of ligand-based and receptor-based virtual screening of HIV entry inhibitors for the CXCR4 and CCR5 receptors using 3D ligand shape matching and ligand-receptor docking
    • DOI 10.1021/ci700415g
    • Pérez-Nueno VI, Ritchie DW, Rabal O, Pascual R, Borrell JI, Teixidó J. 2008a. Comparison of ligand-based and receptor-based virtual screening of HIV entry inhibitors for the CXCR4 and CCR5 receptors using 3D ligand shape matching and ligand-receptor docking. J Chem Inf Model 48:509-533. (Pubitemid 351535420)
    • (2008) Journal of Chemical Information and Modeling , vol.48 , Issue.3 , pp. 509-533
    • Perez-Nueno, V.I.1    Ritchie, D.W.2    Rabal, O.3    Pascual, R.4    Borrella, J.I.5    Teixido, J.6
  • 78
    • 57549116672 scopus 로고    scopus 로고
    • Clustering and classifying diverse hiv entry inhibitors using a novel consensus shape-based virtual screening approach: Further evidence for multiple binding sites within the CCR5 extracellular pocket
    • Pérez-Nueno VI, Ritchie DW, Borrell JI, Teixidó J. 2008b. Clustering and classifying diverse hiv entry inhibitors using a novel consensus shape-based virtual screening approach: further evidence for multiple binding sites within the CCR5 extracellular pocket. J Chem Inf Model 48:2146-2165.
    • (2008) J Chem Inf Model , vol.48 , pp. 2146-2165
    • Pérez-Nueno, V.I.1    Ritchie, D.W.2    Borrell, J.I.3    Teixidó, J.4
  • 79
  • 81
    • 77955108676 scopus 로고    scopus 로고
    • Novel monocyclam derivatives as HIV entry inhibitors: Design, synthesis, anti-HIV evaluation, and their interaction with the CXCR4 Coreceptor
    • Pettersson S, Pérez-Nueno VI, Mena MP, Clotet B, Esté J, Borrell JI, Teixidó J. 2010. Novel monocyclam derivatives as HIV entry inhibitors: design, synthesis, anti-HIV evaluation, and their interaction with the CXCR4 Coreceptor. Chem Med Chem 5:1272-1281.
    • (2010) Chem Med Chem , vol.5 , pp. 1272-1281
    • Pettersson, S.1    Pérez-Nueno, V.I.2    Mena, M.P.3    Clotet, B.4    Esté, J.5    Borrell, J.I.6    Teixidó, J.7
  • 87
    • 77955858374 scopus 로고    scopus 로고
    • Solvation-based scoring for high-throughput docking
    • Alvarez JC, Shoichet B, editors. Boca Raton: CRC Press
    • Rush TS, Manas ES, Tawa GJ, Alvarez JC. 2005. Solvation-based scoring for high-throughput docking. In: Alvarez JC, Shoichet B, editors. Virtual screening in drug discovery. Boca Raton: CRC Press. p 249-277.
    • (2005) Virtual Screening in Drug Discovery , pp. 249-277
    • Rush, T.S.1    Manas, E.S.2    Tawa, G.J.3    Alvarez, J.C.4
  • 88
    • 0035896038 scopus 로고    scopus 로고
    • Docking ligands onto binding site representations derived from proteins built by homology modelling
    • DOI 10.1006/jmbi.2000.4453
    • Schafferhans A, Klebe G. 2001. Docking ligands onto binding site representations derived from proteins built by homology modelling. J Mol Biol 307:407-427. (Pubitemid 33029990)
    • (2001) Journal of Molecular Biology , vol.307 , Issue.1 , pp. 407-427
    • Schafferhans, A.1    Klebe, G.2
  • 89
  • 90
    • 0347296186 scopus 로고    scopus 로고
    • Single administration of interleukin-1 increased corticotropin releasing hormone and corticotropin releasing hormone-receptor mRNA in the hypothalamic paraventricular nucleus which paralleled long-lasting (weeks) sensitization to emotional stressors
    • DOI 10.1016/S0306-4522(02)00555-9, PII S0306452202005559
    • Schmidt ED, Aguilera G, Binnekade R, Tilders FJ. 2003. Single administration of interleukin-1 increased corticotropin releasing hormone and corticotropin releasing hormone-receptor mRNA in the hypothalamic paraventricular nucleus which paralleled longlasting (weeks) sensitization to emotional stressors. Neuroscience 116:275-283. (Pubitemid 36110452)
    • (2003) Neuroscience , vol.116 , Issue.1 , pp. 275-283
    • Schmidt, E.D.1    Aguilera, G.2    Binnekade, R.3    Tilders, F.J.H.4
  • 92
    • 23844449940 scopus 로고    scopus 로고
    • Computer-based de novo design of drug-like molecules
    • DOI 10.1038/nrd1799
    • Schneider G, Fechner U. 2005. Computer-based de novo design of druglike molecules. Nature Re. Drug Discov 4:649-663. (Pubitemid 41149759)
    • (2005) Nature Reviews Drug Discovery , vol.4 , Issue.8 , pp. 649-663
    • Schneider, G.1    Fechner, U.2
  • 93
    • 3042780489 scopus 로고    scopus 로고
    • Co-receptor antagonists as HIV-1 entry inhibitors
    • DOI 10.1097/00001432-200402000-00003
    • Shaheen F, Collman RG. 2004. Co-receptor antagonist as HIV-1 entry inhibitors. Curr Opin Infect Dis 17:7-16. (Pubitemid 39089967)
    • (2004) Current Opinion in Infectious Diseases , vol.17 , Issue.1 , pp. 7-16
    • Shaheen, F.1    Collman, R.G.2
  • 94
    • 0038119607 scopus 로고    scopus 로고
    • 1 cannabinoid receptor: Sites critical for nonclassical cannabinoid agonist interaction
    • DOI 10.1002/bip.10424
    • Shim JY, Welsh WJ, Howlett AC. 2003. Homology model of the CB1 cannabinoid receptor: sites critical for nonclassical cannabinoid agonist interaction. Biopolymers 71:169-189. (Pubitemid 36702318)
    • (2003) Biopolymers - Peptide Science Section , vol.71 , Issue.2 , pp. 169-189
    • Shim, J.-Y.1    Welsh, W.J.2    Howlett, A.C.3
  • 95
    • 34247197042 scopus 로고    scopus 로고
    • Targeting HIV-1 through molecular modeling and docking studies of CXCR4: Leads for therapeutic development
    • DOI 10.1111/j.1747-0285.2007.00478.x
    • Singh S, Malik BK, Sharma DK. 2007. Targeting HIV-1 through molecular modeling and docking studies of CXCR4: leads for therapeutic development. Chem Biol Drug Des 69:191-203. (Pubitemid 46608453)
    • (2007) Chemical Biology and Drug Design , vol.69 , Issue.3 , pp. 191-203
    • Singh, S.1    Malik, B.K.2    Sharma, D.K.3
  • 97
    • 67649397095 scopus 로고    scopus 로고
    • Polyamine compounds for treating chemokine receptor mediated diseases
    • Taigen Biotechnology WO04089360
    • Taigen Biotechnology. 2004. Polyamine compounds for treating chemokine receptor mediated diseases. WO04089360.
    • (2004)
  • 98
    • 67649387775 scopus 로고    scopus 로고
    • Pyrimidine compounds
    • Taigen Biotechnology. US20060281712
    • Taigen Biotechnology. 2006. Pyrimidine compounds. US20060281712.
    • (2006)
  • 101
    • 33744830581 scopus 로고    scopus 로고
    • Identification of a new class of low molecular weight antagonists against the chemokine receptor CXCR4 having the dipicolylamine-zinc(II) complex structure
    • DOI 10.1021/jm060025u
    • Tamamura H, Ojida A, Ogawa T, Tsutsumi H, Masuno H, Nakashima H, Yamamoto N, Hamachi I, Fujii N. 2006. Identification of a new class of low molecular weight antagonists against the chemokine receptor CXCR4 having the dipicolylamine-zinc(II) complex structure. J Med Chem 49: 3412-3415. (Pubitemid 43830540)
    • (2006) Journal of Medicinal Chemistry , vol.49 , Issue.11 , pp. 3412-3415
    • Tamamura, H.1    Ojida, A.2    Ogawa, T.3    Tsutsumi, H.4    Masuno, H.5    Nakashima, H.6    Yamamoto, N.7    Hamachi, I.8    Fujii, N.9
  • 102
    • 79951792452 scopus 로고    scopus 로고
    • Report Presented by
    • Tauzin B. Report 2009. Medicines in development for HIV/AIDS. Presented by America's Pharmaceutical Research Companies. http://www.phrma.org/files/meds- in-dev/AIDS2007SP.pdf
    • (2009) Medicines in Development for HIV/AIDS
    • Tauzin, B.1
  • 106
    • 0035438402 scopus 로고    scopus 로고
    • How does consensus scoring work for virtual library screening? An idealized computer experiment
    • Wang R,Wang S. 2001. How does consensus scoring work for virtual library screening? An idealized computer experiment. J Chem Inf Comput Sci 41:1422-1426.
    • (2001) J Chem Inf Comput Sci , vol.41 , pp. 1422-1426
    • Wang, R.1    Wang, S.2
  • 109
    • 57349105727 scopus 로고    scopus 로고
    • Comparison of the potential multiple binding modes of bicyclam, monocylam, and noncyclam small-molecule CXC chemokine receptor 4 inhibitors
    • Wong RSY, Bodart V, Metz M, Labrecque J, Bridger G, Fricker SP. 2008. Comparison of the potential multiple binding modes of bicyclam, monocylam, and noncyclam small-molecule CXC chemokine receptor 4 inhibitors. Mol Pharmacol 74:1485-1495.
    • (2008) Mol Pharmacol , vol.74 , pp. 1485-1495
    • Wong, R.S.Y.1    Bodart, V.2    Metz, M.3    Labrecque, J.4    Bridger, G.5    Fricker, S.P.6
  • 115
    • 0035900771 scopus 로고    scopus 로고
    • Structural and functional characterization of human CXCR4 as a chemokine receptor and HIV-1 co-receptor by mutagenesis and molecular modeling studies
    • Zhou N, Luo Z, Luo J, Liu D, Hall JW, Pomerantz RJ, Huang Z. 2001. Structural and functional characterization of human CXCR4 as a chemokine receptor and HIV-1 co-receptor by mutagenesis and molecular modeling studies. J Biol Chem 276: 42826-42833.
    • (2001) J Biol Chem , vol.276 , pp. 42826-42833
    • Zhou, N.1    Luo, Z.2    Luo, J.3    Liu, D.4    Hall, J.W.5    Pomerantz, R.J.6    Huang, Z.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.