-
1
-
-
0033637452
-
Whole genomes: The foundation of new biology and medicine
-
Broder, S.; Venter, J.C. Whole genomes: the foundation of new biology and medicine. Curr. Opin. Biotechnol., 2000, 11, 581-585.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 581-585
-
-
Broder, S.1
Venter, J.C.2
-
2
-
-
2042437650
-
International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome
-
Lander, E.S.; Linton, L.M.; Birren, B.; Nusbaum, C.; Zody, M.C.; Baldwin, J.; Devon, K.; Dewar, K.; Doyle, M.; FitzHugh, W.; Funke, R.; Gage, D.; Harris, K.; Heaford, A.; Howland, J.; Kann, L.; Lehoczky, J.; LeVine, R.; McEwan, P.; McKernan, K.; Meldrim, J.; Mesirov, J.P.; Miranda, C.; Morris, W.; Naylor, J.; Raymond, C.; Rosetti, M.; Santos, R.; Sheridan, A.; Sougnez, C.; Stange-Thomann, N.; Stojanovic, N.; Subramanian, A.; Wyman, D.; Rogers, J.; Sulston, J.; Ainscough, R.; Beck, S.; Bentley, D.; Burton, J.; Clee, C.; Carter, N.; Coulson, A.; Deadman, R.; Deloukas, P.; Dunham, A.; Dunham, I.; Durbin, R.; French, L.; Grafham, D.; Gregory, S.; Hubbard, T.; Humphray, S.; Hunt, A.; Jones, M.; Lloyd, C.; McMurray, A.; Matthews, L.; Mercer, S.; Milne, S.; Mullikin, J.C.; Mungall, A.; Plumb, R.; Ross, M.; Shownkeen, R.; Sims, S.; Waterston, R.H., Wilson, R.K.; Hillier, L.W.; McPherson, J.D.; Marra, M.A.; Mardis, E.R.; Fulton, L.A.; Chinwalla, A.T.; Pepin, K.H.; Gish, W.R.; Chissoe, S.L.; Wendl, M.C.; Delehaunty, K.D.; Miner, T.L.; Delehaunty, A.; Kramer, J.B.; Cook, L.L.; Fulton, R.S.; Johnson, D.L.; Minx, P.J.; Clifton, S.W.; Hawkins, T.; Branscomb, E.; Predki, P.; Richardson, P.; Wenning, S.; Slezak, T.; Doggett, N.; Cheng, J.F.; Olsen, A.; Lucas, S.; Elkin, C.; Uberbacher, E.; Frazier, M.; Gibbs, R.A.; Muzny, D.M.; Scherer, S.E.; Bouck, J.B.; Sodergren, E.J.; Worley, K.C.; Rives, C.M.; Gorrell, J.H.; Metzker, M.L.; Naylor, S.L.; Kucherlapati, R.S.; Nelson, D.L.; Weinstock, G.M.; Sakaki, Y.; Fujiyama, A.; Hattori, M.; Yada, T.; Toyoda, A.; Itoh, T.; Kawagoe, C.; Watanabe, H.; Totoki, Y.; Taylor, T.; Weissenbach, J.; Heilig, R.; Saurin, W.; Artiguenave, F.; Brottier, P.; Bruls, T.; Pelletier, E.; Robert, C.; Wincker, P.; Smith, D.R.; Doucette- Stamm, L.; Rubenfield, M.; Weinstock, K.; Lee, H.M.; Dubois, J.; Rosenthal, A.; Platzer, M.; Nyakatura, G.; Taudien, S.; Rump, A.; Yang, H.; Yu, J.; Wang, J.; Huang, G.; Gu, J.; Hood, L.; Rowen, L.; Madan, A.; Qin, S.; Davis, R.W.; Federspiel, N.A.; Abola, A.P.; Proctor, M.J.; Myers, R.M.; Schmutz, J.; Dickson, M.; Grimwood, J.; Cox, D.R.; Olson, M.V.; Kaul, R.; Raymond, C.; Shimizu, N.; Kawasaki, K.; Minoshima, S.; Evans, G.A.; Athanasiou, M.; Schultz, R.; Roe, B.A.; Chen, F.; Pan, H.; Ramser, J.; Lehrach, H.; Reinhardt, R.; McCombie, W.R.; de la Bastide, M.; Dedhia, N.; Blöcker, H.; Hornischer, K.; Nordsiek, G.; Agarwala, R.; Aravind, L.; Bailey, J.A.; Bateman, A.; Batzoglou, S.; Birney, E.; Bork, P.; Brown, D.G.; Burge, C.B.; Cerutti, L.; Chen, H.C.; Church, D.; Clamp, M.; Copley, R.R.; Doerks, T.; Eddy, S.R.; Eichler, E..; Furey, T.S.; Galagan, J.; Gilbert, J.G.; Harmon, C.; Hayashizaki, Y.; Haussler, D.; Hermjakob, H.; Hokamp, K.; Jang, W.; Johnson, L.S.; Jones, T.A.; Kasif, S.; Kaspryzk, A.; Kennedy, S.; Kent, W.J.; Kitts, P.; Koonin, E.V.; Korf, I.; Kulp, D.; Lancet, D.; Lowe, T.M.; McLysaght, A.; Mikkelsen, T.; Moran, J.V.; Mulder, N.; Pollara, V.J.; Ponting, C.P.; Schuler, G.; Schultz, J.; Slater, G.; Smit ,A.F.; Stupka, E.; Szustakowski, J.; Thierry-Mieg, D.; Thierry-Mieg, J.; Wagner, L.; Wallis, J.; Wheeler, R.; Williams, A.; Wolf, Y.I.; Wolfe, K.H.; Yang, S.P.; Yeh, R.F.; Collins, F.; Guyer, M.S.; Peterson, J.; Felsenfeld, A.; Wetterstrand, K.A.; Patrinos, A.; Morgan, M.J.; de Jong, P.; Catanese, J.J.; Osoegawa, K.; Shizuya, H.; Choi, S.; Chen, Y.J.; International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature, 2001, 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
Levine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
Shownkeen, R.65
Sims, S.66
Waterston, R.H.67
Wilson, R.K.68
Hillier, L.W.69
McPherson, J.D.70
Marra, M.A.71
Mardis, E.R.72
Fulton, L.A.73
Chinwalla, A.T.74
Pepin, K.H.75
Gish, W.R.76
Chissoe, S.L.77
Wendl, M.C.78
Delehaunty, K.D.79
Miner, T.L.80
Delehaunty, A.81
Kramer, J.B.82
Cook, L.L.83
Fulton, R.S.84
Johnson, D.L.85
Minx, P.J.86
Clifton, S.W.87
Hawkins, T.88
Branscomb, E.89
Predki, P.90
Richardson, P.91
Wenning, S.92
Slezak, T.93
Doggett, N.94
Cheng, J.F.95
Olsen, A.96
Lucas, S.97
Elkin, C.98
Uberbacher, E.99
more..
-
3
-
-
0035895505
-
The sequence of the human genome
-
Venter, J.C., Adams, M.D.; Myers, E.W.; Li, P.W.; Mural, R.I.; Sutton, G.G.; Smith, H.O.; Yandell, M.; Evans, C.A.; Holt, R.A.; Gocayne, J.D.; Amanatides, P.; Ballew, R.M.; Huson, D.H.; Wortman, J.R.; Zhang, Q.; Kodira, C.D.; Zheng, X.H.; Chen, L.; Skupski, M.; Subramanian, G.; Thomas, P.D.; Zhang, J.; Miklos, G.L.G.; Nelson, C.; Broder, S.; Clark, A.G.; Nadeau, J.; McKusick, V.A.; Zinder, N.; Levine, A.J.; Roberts, R.J.; Simon, M.; Slayman, C.; Hunkapiller, M.; Bolanos, R.; Delcher, A.; Dew, I.; Fasulo, D.; Flanigan, M.; Florea, L.; Halpern, A.; Hannenhalli, S.; Kravitz, S.; Levy, S.; Mobarry, C.; Reinert, K.; Remington, K.; Abu-Threideh, J.; Beasley, E.; Biddick, K.; Bonazzi, V.; Brandon, R.; Cargill, M.; Chandramouliswaran, I.; Charlab, R.; Chaturvedi, K.; Deng, Z.; Di Francesco, V.; Dunn, P.; Eilbeck, K.; Evangelista, C.; Gabrielian, A.E.; Gan, W.; Ge, W.; Gong, F.; Gu, Z.; Guan,.; Heiman, T.J.; Higgins, M.E.; Ji, R.R.; Ke, Z.; Ketchum, K.A.; Lai, Z.; Lei, Y.; Li, Z.; Li, J.; Liang, Y.; Lin, X.; Lu, F.; Merkulov, G.V.; Milshina, N.; Moore, H.M.; Naik, A.K.; Narayan, V.A.; Neelam, B.; Nusskern, D.; Rusch, D.B.; Salzberg, S.; Shao, W., Shue, B.; Sun, J.; Wang, Z.Y.; Wang, A.; Wang, X.; Wang, J.; Wei, M.H.; Wides, R.; Xiao, C.; Yan, C.; Yao, A.; Ye, J.; Zhan, M.; Zhang, W.; Zhang, H.; Zhao, Q.; Zheng, L.; Zhong, F.; Zhong, W.; Zhu, S.C.; Zhao, S.; Gilbert, D.; Baumhueter, S.; Spier, G.; Carter, C.; Cravchik, A.; Woodage, T.; Ali, F.; An, H.; Awe, A.; Baldwin, D.; Baden, H.; Barnstead, M.; Barrow, I.; Beeson, K.; Busam, D.; Carver, A.; Center, A.; Cheng, M.L.; Curry, L.; Danaher, S.; Davenport, L.; Desilets, R.; Dietz, S.; Dodson, K.; Doup, L.; Ferriera, S.; Garg, N.; Gluecksmann, A.; Hart, B.; Haynes, J.; Haynes, C.; Heiner, C.; Hladun, S.; Hostin, D.; Houck, J.; Howland, T.; Ibegwam, C.; Johnson, J.; Kalush, F.; Kline, L.; Koduru, S.; Love, A.; Mann, F.; May, D.; McCawley, S.; McIntosh, T.; McMullen, I.; Moy, M.; Moy, L.; Murphy, B.; Nelson, K.; Pfannkoch, C.; Pratts, E.; Puri, V.; Qureshi, H.; Reardon, M.; Rodriguez, R.; Rogers, Y.H.; Romblad, D.; Ruhfel, B.; Scott, R.; Sitter, C.; Smallwood, M.; Stewart, E.; Strong, R.; Suh, E.; Thomas, R.; Tint, N.N.; Tse, S.; Vech, C.; Wang, G.; Wetter, J.; Williams, S.; Williams, M.; Windsor, S.; Winn-Deen, E.; Wolfe, K.; Zaveri, J.; Zaveri, K.;Abril, J.F.; Guigó, R.; Campbell, M.J.; Sjolander, K.V.; Karlak, B.; Kejariwal, A.; Mi, H.; Lazareva, B.; Hatton, T.; Narechania, A.; Diemer, K.; Muruganujan, A.; Guo, N.; Sato, S.; Bafna, V.; Istrail, S.; Lippert, R.; Schwartz, R.; Walenz, B.; Yooseph, S.; Allen, D.; Basu, A.; Baxendale, J.; Blick, L.; Caminha, M.; Carnes-Stine, J.; Caulk, P.; Chiang, Y.H.; Coyne, M.; Dahlke, C.; Mays, A.D.; Dombroski, M.; Donnelly, M.; Ely, D.; Esparham, S.; Fosler, C.; Gire, H.; Glanowski, S.; Glasser, K.; Glodek, A.; Gorokhov, M.; Graham, K.; Gropman, B.; Harris, M.; Heil, J.; Henderson, S.; Hoover, J.; Jennings, D.; Jordan, C.; Jordan, J.; Kasha, J.; Kagan, L.; Kraft, C.; Levitsky, A.; Lewis, M.; Liu, X.; Lopez, J.; Ma, D.; Majoros, W.; McDaniel, J.; Murphy, S.; Newman, M.; Nguyen, T.; Nguyen, N.; Nodell, M.; Pan, S.; Peck, J.; Peterson, M.; Rowe, W.; Sanders, R.; Scott, J.; Simpson, M.; Smith, T.; Sprague, A.; Stockwell, T.; Turner, R.; Venter, E.; Wang, M.; Wen, M.; Wu, D.; Wu, M.; Xia, A.; Zandieh, A.;1 Xiaohong Zhu1, X. The sequence of the human genome. Science, 2001, 291, 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.I.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Miklos, G.L.G.24
Nelson, C.25
Broder, S.26
Clark, A.G.27
Nadeau, J.28
McKusick, V.A.29
Zinder, N.30
Levine, A.J.31
Roberts, R.J.32
Simon, M.33
Slayman, C.34
Hunkapiller, M.35
Bolanos, R.36
Delcher, A.37
Dew, I.38
Fasulo, D.39
Flanigan, M.40
Florea, L.41
Halpern, A.42
Hannenhalli, S.43
Kravitz, S.44
Levy, S.45
Mobarry, C.46
Reinert, K.47
Remington, K.48
Abu-Threideh, J.49
Beasley, E.50
Biddick, K.51
Bonazzi, V.52
Brandon, R.53
Cargill, M.54
Chandramouliswaran, I.55
Charlab, R.56
Chaturvedi, K.57
Deng, Z.58
Di Francesco, V.59
Dunn, P.60
Eilbeck, K.61
Evangelista, C.62
Gabrielian, A.E.63
Gan, W.64
Ge, W.65
Gong, F.66
Gu, Z.67
Guan68
Heiman, T.J.69
Higgins, M.E.70
Ji, R.R.71
Ke, Z.72
Ketchum, K.A.73
Lai, Z.74
Lei, Y.75
Li, Z.76
Li, J.77
Liang, Y.78
Lin, X.79
Lu, F.80
Merkulov, G.V.81
Milshina, N.82
Moore, H.M.83
Naik, A.K.84
Narayan, V.A.85
Neelam, B.86
Nusskern, D.87
Rusch, D.B.88
Salzberg, S.89
Shao, W.90
Shue, B.91
Sun, J.92
Wang, Z.Y.93
Wang, A.94
Wang, X.95
Wang, J.96
Wei, M.H.97
Wides, R.98
Xiao, C.99
more..
-
4
-
-
0034820250
-
Combinatorial approaches in anticancer drug discovery: Recent advances in design and synthesis
-
Bhattacharyya, S. Combinatorial approaches in anticancer drug discovery: recent advances in design and synthesis. Curr. Med. Chem., 2001, 8, 1383-1404.
-
(2001)
Curr. Med. Chem.
, vol.8
, pp. 1383-1404
-
-
Bhattacharyya, S.1
-
5
-
-
0036831344
-
High-throughput bioassay-guided fractionation: A technique for rapidly assigning observed activity to individual components of combinatorial libraries, screened in HTS bioassays
-
Phillipson, D.W.; Milgram, K.E.; Yanovsky, A.I.; Rusnak, L.S.; Haggerty, D.A.; Farrell, W.P.; Greig, M.J.; Xiong, X.; Proefke, M.L. High-throughput bioassay-guided fractionation: a technique for rapidly assigning observed activity to individual components of combinatorial libraries, screened in HTS bioassays. J. Comb. Chem., 2002, 4, 591-599.
-
(2002)
J. Comb. Chem.
, vol.4
, pp. 591-599
-
-
Phillipson, D.W.1
Milgram, K.E.2
Yanovsky, A.I.3
Rusnak, L.S.4
Haggerty, D.A.5
Farrell, W.P.6
Greig, M.J.7
Xiong, X.8
Proefke, M.L.9
-
6
-
-
33846796229
-
A pipeline for ligand discovery using small-molecule microarrays
-
Duffner, J.L.; Clemons, P.A.; Koehler, A.N. A pipeline for ligand discovery using small-molecule microarrays. Curr. Opin. Chem. Biol., 2007, 11, 74-82.
-
(2007)
Curr. Opin. Chem. Biol.
, vol.11
, pp. 74-82
-
-
Duffner, J.L.1
Clemons, P.A.2
Koehler, A.N.3
-
7
-
-
33846676987
-
Chemical genetics: Where genetics and pharmacology meet
-
Knight, Z.A.; Shokat, K.M. Chemical genetics: where genetics and pharmacology meet. Cell, 2007, 128, 425-430.
-
(2007)
Cell
, vol.128
, pp. 425-430
-
-
Knight, Z.A.1
Shokat, K.M.2
-
8
-
-
33749499483
-
Small molecules, big players: The National Cancer Institute's Initiative for Chemical Genetics
-
DOI 10.1158/0008-5472.CAN-06-2552
-
Tolliday, N.; Clemons, P.A.; Ferraiolo, P.; Koehler, A.N.; Lewis, T.A.; Li, X.; Schreiber, S.L.; Gerhard, D.S.; Eliasof, S. Small molecules, big players: the National Cancer Institute's Initiative for Chemical Genetics. Cancer Res., 2006, 66, 8935-8942. (Pubitemid 44521107)
-
(2006)
Cancer Research
, vol.66
, Issue.18
, pp. 8935-8942
-
-
Tolliday, N.1
Clemons, P.A.2
Ferraiolo, P.3
Koehler, A.N.4
Lewis, T.A.5
Li, X.6
Schreiber, S.L.7
Gerhard, D.S.8
Eliasof, S.9
-
9
-
-
33746058237
-
Streamlining lead discovery by aligning in silico and high-throughput screening
-
Davies, J.W.; Glick, M.; Jenkins, J.L. Streamlining lead discovery by aligning in silico and high-throughput screening. Curr. Opin. Chem. Biol., 2006, 10, 343-351.
-
(2006)
Curr. Opin. Chem. Biol.
, vol.10
, pp. 343-351
-
-
Davies, J.W.1
Glick, M.2
Jenkins, J.L.3
-
10
-
-
4544321119
-
Cutting the cost of drug development?
-
Rawlins, M.D. Cutting the cost of drug development? Nat. Rev. Drug Discov., 2004, 3, 360-364.
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, pp. 360-364
-
-
Rawlins, M.D.1
-
11
-
-
33750994920
-
Bridging chemical and biological space: "target fishing" using 2D and 3D molecular descriptors
-
Nettles, J.H.; Jenkins, J.L.; Bender, A.; Deng, Z.; Davies, J.W.; Glick, M. Bridging chemical and biological space: "target fishing" using 2D and 3D molecular descriptors. J. Med. Chem., 2006, 49, 6802-6810.
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6802-6810
-
-
Nettles, J.H.1
Jenkins, J.L.2
Bender, A.3
Deng, Z.4
Davies, J.W.5
Glick, M.6
-
12
-
-
33751099290
-
Smart drug discovery leveraging innovative technologies and predictive knowledge
-
Sawyer, T.K. Smart drug discovery leveraging innovative technologies and predictive knowledge. Nat. Chem. Biol., 2006, 2, 646-648.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 646-648
-
-
Sawyer, T.K.1
-
13
-
-
33751072896
-
Drug discovery through industry-academic partnerships
-
Gray, N.S. Drug discovery through industry-academic partnerships. Nat. Chem. Biol., 2006, 2, 649-653.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 649-653
-
-
Gray, N.S.1
-
14
-
-
33745161050
-
Structural biology and drug discovery
-
Scapin, G. Structural biology and drug discovery. Curr. Pharm. Des., 2006, 12, 2087-2097.
-
(2006)
Curr. Pharm. Des.
, vol.12
, pp. 2087-2097
-
-
Scapin, G.1
-
15
-
-
39049094335
-
Virtual screening and its integration with modern drug design technologies
-
Guido, R.V.; Oliva, G.; Andricopulo, A.D. Virtual screening and its integration with modern drug design technologies. Curr. Med. Chem., 2008, 15, 37-46.
-
(2008)
Curr. Med. Chem.
, vol.15
, pp. 37-46
-
-
Guido, R.V.1
Oliva, G.2
Andricopulo, A.D.3
-
16
-
-
34447275949
-
Ligand docking and structure-based virtual screening in drug discovery
-
Cavasotto, C.N.; Orry, A.J. Ligand docking and structure-based virtual screening in drug discovery. Curr. Top. Med. Chem., 2007, 7, 1006-1014.
-
(2007)
Curr. Top. Med. Chem.
, vol.7
, pp. 1006-1014
-
-
Cavasotto, C.N.1
Orry, A.J.2
-
17
-
-
8844263008
-
Docking and scoring in virtual screening for drug discovery: Methods and applications
-
DOI 10.1038/nrd1549
-
Kitchen, D.B.; Decornez, H.; Furr, J.R.; Bajorath, J. Docking and scoring in virtual screening for drug discovery: methods and applications. Nat. Rev. Drug Discov., 2004, 3, 935-949. (Pubitemid 39529931)
-
(2004)
Nature Reviews Drug Discovery
, vol.3
, Issue.11
, pp. 935-949
-
-
Kitchen, D.B.1
Decornez, H.2
Furr, J.R.3
Bajorath, J.4
-
18
-
-
33748276474
-
Protein-ligand docking: Current status and future challenges
-
DOI 10.1002/prot.21082
-
Sousa, S.F.; Fernandes, P.A.; Ramos, M.J. Protein-ligand docking: current status and future challenges. Proteins, 2006, 65, 15-26. (Pubitemid 44320611)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.1
, pp. 15-26
-
-
Sousa, S.F.1
Fernandes, P.A.2
Ramos, M.J.3
-
19
-
-
33749245117
-
Prediction of proteinligand interactions. Docking and scoring: Successes and gaps
-
Leach, A.R.; Shoichet, B.K.; Peishoff, C.E. Prediction of proteinligand interactions. Docking and scoring: successes and gaps. J. Med. Chem., 2006, 49, 5851-5855.
-
(2006)
J. Med. Chem.
, vol.49
, pp. 5851-5855
-
-
Leach, A.R.1
Shoichet, B.K.2
Peishoff, C.E.3
-
20
-
-
33749242759
-
Contribution of conformer focusing to the uncertainty in predicting free energies for protein-ligand binding
-
Tirado-Rives, J.; Jorgensen, W.L. Contribution of conformer focusing to the uncertainty in predicting free energies for protein-ligand binding. J. Med. Chem., 2006, 49, 5880-5884.
-
(2006)
J. Med. Chem.
, vol.49
, pp. 5880-5884
-
-
Tirado-Rives, J.1
Jorgensen, W.L.2
-
21
-
-
33749260698
-
A critical assessment of docking programs and scoring functions
-
Warren, G.L.; Andrews, C.W.; Capelli, A.M.; Clarke, B.; LaLonde, J.; Lambert, M.H.; Lindvall, M.; Nevins, N.; Semus, S.F.; Senger, S.; Tedesco, G.; Wall, I.D.; Woolven, J.M.; Peishoff, C.E.; Head, M.S. A critical assessment of docking programs and scoring functions. J. Med. Chem., 2006, 49, 5912-5931.
-
(2006)
J. Med. Chem.
, vol.49
, pp. 5912-5931
-
-
Warren, G.L.1
Andrews, C.W.2
Capelli, A.M.3
Clarke, B.4
Lalonde, J.5
Lambert, M.H.6
Lindvall, M.7
Nevins, N.8
Semus, S.F.9
Senger, S.10
Tedesco, G.11
Wall, I.D.12
Woolven, J.M.13
Peishoff, C.E.14
Head, M.S.15
-
22
-
-
33947158039
-
Acceleration of the drug discovery process: A combinatorial approach using NMR spectroscopy and virtual screening
-
Morelli, X.J.; Rigby, A.C. Acceleration of the drug discovery process: a combinatorial approach using NMR spectroscopy and virtual screening. Comput.-Aided Drug. Des., 2007, 33-49.
-
(2007)
Comput.-Aided Drug. Des.
, pp. 33-49
-
-
Morelli, X.J.1
Rigby, A.C.2
-
23
-
-
33847207834
-
Molecular similarity analysis in virtual screening: Foundations, limitations and novel approaches
-
DOI 10.1016/j.drudis.2007.01.011, PII S1359644607000529
-
Eckert, H.; Bajorath, J. Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches. Drug Discov. Today, 2007, 12, 225-233. (Pubitemid 46304324)
-
(2007)
Drug Discovery Today
, vol.12
, Issue.5-6
, pp. 225-233
-
-
Eckert, H.1
Bajorath, J.2
-
24
-
-
34249092941
-
Virtual high-throughput screening of molecular databases
-
Seifert, M.H.; Kraus, J.; Kramer, B. Virtual high-throughput screening of molecular databases. Curr. Opin. Drug Discov. Dev., 2007, 10, 298-307. (Pubitemid 46800224)
-
(2007)
Current Opinion in Drug Discovery and Development
, vol.10
, Issue.3
, pp. 298-307
-
-
Seifert, M.H.J.1
Kraus, J.2
Kramer, B.3
-
25
-
-
15544365691
-
New methodologies for ligand-based virtual screening
-
DOI 10.2174/1381612053507549
-
Stahura, F.L.; Bajorath, J. New methodologies for ligand-based virtual screening. Curr. Pharm. Des., 2005, 11, 1189-1202. (Pubitemid 40403377)
-
(2005)
Current Pharmaceutical Design
, vol.11
, Issue.9
, pp. 1189-1202
-
-
Stahura, F.L.1
Bajorath, J.2
-
26
-
-
0031710509
-
Chemical genetics resulting from a passion for synthetic organic chemistry
-
Schreiber, S.L. Chemical genetics resulting from a passion for synthetic organic chemistry. Bioorg. Med. Chem., 1998, 6, 1127-1152.
-
(1998)
Bioorg. Med. Chem.
, vol.6
, pp. 1127-1152
-
-
Schreiber, S.L.1
-
27
-
-
0034331004
-
Chemical genetics: Ligand-based discovery of gene function
-
Stockwell, B.R. Chemical genetics: ligand-based discovery of gene function. Nat. Rev. Genet., 2000, 1, 116-125.
-
(2000)
Nat. Rev. Genet.
, vol.1
, pp. 116-125
-
-
Stockwell, B.R.1
-
28
-
-
34250621337
-
Chemical genetics: Elucidating biological systems with small-molecule compounds
-
DOI 10.1038/sj.jid.5700853, PII 5700853
-
Kawasumi, M.; Nghiem, P. Chemical genetics: elucidating biological systems with small-molecule compounds. J. Invest. Dermatol., 2007, 127, 1577-1584. (Pubitemid 46933419)
-
(2007)
Journal of Investigative Dermatology
, vol.127
, Issue.7
, pp. 1577-1584
-
-
Kawasumi, M.1
Nghiem, P.2
-
29
-
-
21444458446
-
Forward in reverse: How reverse genetics complements chemical genetics
-
DOI 10.1517/14622416.6.4.429
-
Ross-Macdonald, P. Forward in reverse: how reverse genetics complements chemical genetics. Pharmacogenomics, 2005, 6, 429-434. (Pubitemid 40916366)
-
(2005)
Pharmacogenomics
, vol.6
, Issue.4
, pp. 429-434
-
-
Ross-Macdonald, P.1
-
30
-
-
33748573973
-
A chemical genetics approach for the discovery of apoptosis inducers: From phenotypic cell based HTS assay and structure-activity relationship studies, to identification of potential anticancer agents and molecular targets
-
DOI 10.2174/092986706778201521
-
Cai, S.X.; Drewe, J.; Kasibhatla, S. A chemical genetics approach for the discovery of apoptosis inducers: from phenotypic cell based HTS assay and structure-activity relationship studies, to identification of potential anticancer agents and molecular targets. Curr. Med. Chem., 2006, 13, 2627-2644. (Pubitemid 44364141)
-
(2006)
Current Medicinal Chemistry
, vol.13
, Issue.22
, pp. 2627-2644
-
-
Cai, S.X.1
Drewe, J.2
Kasibhatla, S.3
-
31
-
-
33745726644
-
Chemical genetics
-
Walsh, D.P.; Chang, Y.T. Chemical genetics. Chem. Rev., 2006, 106, 2476-2530.
-
(2006)
Chem. Rev.
, vol.106
, pp. 2476-2530
-
-
Walsh, D.P.1
Chang, Y.T.2
-
32
-
-
23844456151
-
Here be dragons: Docking and screening in an uncharted region of chemical space
-
Brenk, R.; Irwin, J.J.; Shoichet, B.K. Here be dragons: docking and screening in an uncharted region of chemical space. J. Biomol. Screen, 2005, 10, 667-674.
-
(2005)
J. Biomol. Screen
, vol.10
, pp. 667-674
-
-
Brenk, R.1
Irwin, J.J.2
Shoichet, B.K.3
-
33
-
-
33751321865
-
A detergent-based assay for the detection of promiscuous inhibitors
-
Feng, B.Y.; Shoichet, B.K. A detergent-based assay for the detection of promiscuous inhibitors. Nat. Prot., 2006, 1, 550-553.
-
(2006)
Nat. Prot.
, vol.1
, pp. 550-553
-
-
Feng, B.Y.1
Shoichet, B.K.2
-
34
-
-
34249000046
-
A high-throughput screen for aggregation-based inhibition in a large compound library
-
Feng, B.Y.; Simeonov, A.; Jadhav, A.; Babaoglu, K.; Inglese, J.; Shoichet, B.K.; Austin, C.P. A high-throughput screen for aggregation-based inhibition in a large compound library. J. Med. Chem., 2007, 50, 2385-2390.
-
(2007)
J. Med. Chem.
, vol.50
, pp. 2385-2390
-
-
Feng, B.Y.1
Simeonov, A.2
Jadhav, A.3
Babaoglu, K.4
Inglese, J.5
Shoichet, B.K.6
Austin, C.P.7
-
35
-
-
23844500772
-
High-throughput assays for promiscuous inhibitors
-
Feng, B.Y.; Shelat, A.; Doman, T.N.; Guy, R.K.; Shoichet, B.K. High-throughput assays for promiscuous inhibitors. Nat. Chem. Biol., 2005, 1, 146-148.
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 146-148
-
-
Feng, B.Y.1
Shelat, A.2
Doman, T.N.3
Guy, R.K.4
Shoichet, B.K.5
-
36
-
-
39349094523
-
Smallmolecule aggregates inhibit amyloid polymerization
-
Feng, B.Y.; Toyama, B.H.; Wille, H.; Colby, D.W.; Collins, S.R.; May, B.C.; Prusiner, S.B.; Weissman, J.; Shoichet, B.K. Smallmolecule aggregates inhibit amyloid polymerization. Nat. Chem. Biol., 2008, 4, 197-199.
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 197-199
-
-
Feng, B.Y.1
Toyama, B.H.2
Wille, H.3
Colby, D.W.4
Collins, S.R.5
May, B.C.6
Prusiner, S.B.7
Weissman, J.8
Shoichet, B.K.9
-
37
-
-
3242657512
-
Strategies for the Identification and Generation of Informative Compound Sets
-
Bajorath, J., Ed.; Humana Press: New Jersey, USA
-
Lajiness, M.S.; Shanmugasundaram, V., Strategies for the Identification and Generation of Informative Compound Sets. In: Bajorath, J., Ed.; Chemoinformatics: Concepts, Methods, and Tools for Drug Discovery. Humana Press: New Jersey, USA, 2004, Vol. 275, pp. 111-129.
-
(2004)
Chemoinformatics: Concepts, Methods, and Tools for Drug Discovery
, vol.275
, pp. 111-129
-
-
Lajiness, M.S.1
Shanmugasundaram, V.2
-
38
-
-
43049129991
-
Comprehensive mechanistic analysis of hits from high-throughput and docking screens against beta-lactamase
-
Babaoglu, K.; Simeonov, A.; Irwin, J.J.; Nelson, M.E.; Feng, B.; Thomas, C.J.; Cancian, L.; Costi, M.P.; Maltby, D.A.; Jadhav, A.; Inglese, J.; Austin, C.P.; Shoichet, B.K. Comprehensive mechanistic analysis of hits from high-throughput and docking screens against beta-lactamase. J. Med. Chem., 2008, 51, 2502-2511.
-
(2008)
J. Med. Chem.
, vol.51
, pp. 2502-2511
-
-
Babaoglu, K.1
Simeonov, A.2
Irwin, J.J.3
Nelson, M.E.4
Feng, B.5
Thomas, C.J.6
Cancian, L.7
Costi, M.P.8
Maltby, D.A.9
Jadhav, A.10
Inglese, J.11
Austin, C.P.12
Shoichet, B.K.13
-
39
-
-
11144298973
-
Exploring biology with small organic molecules
-
Stockwell, B.R. Exploring biology with small organic molecules. Nature, 2004, 432, 846-854.
-
(2004)
Nature
, vol.432
, pp. 846-854
-
-
Stockwell, B.R.1
-
40
-
-
1642540577
-
Evaluation of docking performance: Comparative data on docking algorithms evaluation of library ranking efficacy in virtual screening
-
Kontoyianni, M.; McClellan, L.M.; Sokol, G.S.; Kontoyianni, M.; Sokol, G.S.; McClellan, L.M. Evaluation of docking performance: comparative data on docking algorithms evaluation of library ranking efficacy in virtual screening. J. Med. Chem., 2004, 47, 558-565.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 558-565
-
-
Kontoyianni, M.1
McClellan, L.M.2
Sokol, G.S.3
Kontoyianni, M.4
Sokol, G.S.5
McClellan, L.M.6
-
41
-
-
11144255694
-
Evaluation of library ranking efficacy in virtual screening
-
Kontoyianni, M.; Sokol, G.S.; McClellan, L.M. Evaluation of library ranking efficacy in virtual screening. J. Comput. Chem., 2005, 26, 11-22.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 11-22
-
-
Kontoyianni, M.1
Sokol, G.S.2
McClellan, L.M.3
-
42
-
-
0024725804
-
ALADDIN: An integrated tool for computer-assisted molecular design and pharmacophore recognition from geometric, steric, and substructure searching of three-dimensional molecular structures
-
Van Drie, J.H.; Weininger, D.; Martin, Y.C. ALADDIN: an integrated tool for computer-assisted molecular design and pharmacophore recognition from geometric, steric, and substructure searching of three-dimensional molecular structures. J. Comput. Aided Mol. Des., 1989, 3, 225-251.
-
(1989)
J. Comput. Aided Mol. Des.
, vol.3
, pp. 225-251
-
-
Van Drie, J.H.1
Weininger, D.2
Martin, Y.C.3
-
43
-
-
0020491251
-
A geometric approach to macromolecule-ligand interactions
-
Kuntz, I.D.; Blaney, J.M.; Oatley, S.J.; Langridge, R.; Ferrin, T.E. A geometric approach to macromolecule-ligand interactions. J. Mol. Biol., 1982, 161, 269-288.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 269-288
-
-
Kuntz, I.D.1
Blaney, J.M.2
Oatley, S.J.3
Langridge, R.4
Ferrin, T.E.5
-
45
-
-
33646493006
-
Scaffold-hopping potential of ligand-based similarity concepts
-
Renner, S.; Schneider, G. Scaffold-hopping potential of ligand-based similarity concepts. Chem. Med. Chem., 2006, 1, 181-185.
-
(2006)
Chem. Med. Chem.
, vol.1
, pp. 181-185
-
-
Renner, S.1
Schneider, G.2
-
46
-
-
30444444074
-
Discovery of nonpeptidic small-molecule AP-1 inhibitors: Lead hopping based on a three-dimensional pharmacophore model
-
DOI 10.1021/jm050550d
-
Tsuchida, K.; Chaki, H.; Takakura, T.; Kotsubo, H.; Tanaka, T.; Aikawa, Y.; Shiozawa, S.; Hirono, S. Discovery of nonpeptidic small-molecule AP-1 inhibitors: lead hopping based on a three-dimensional pharmacophore model. J. Med. Chem., 2006, 49, 80-91. (Pubitemid 43077324)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.1
, pp. 80-91
-
-
Tsuchida, K.1
Chaki, H.2
Takakura, T.3
Kotsubo, H.4
Tanaka, T.5
Aikawa, Y.6
Shiozawa, S.7
Hirono, S.8
-
47
-
-
34249038325
-
Lead optimization via high-throughput molecular docking
-
Joseph-McCarthy, D.; Baber, J.C.; Feyfant, E.; Thompson, D.C.; Humblet, C. Lead optimization via high-throughput molecular docking. Curr. Opin. Drug Discov. Dev., 2007, 10, 264-274. (Pubitemid 46800220)
-
(2007)
Current Opinion in Drug Discovery and Development
, vol.10
, Issue.3
, pp. 264-274
-
-
Joseph-Mccarthy, D.1
Baber, J.C.2
Feyfant, E.3
Thompson, D.C.4
Humblet, C.5
-
48
-
-
0029705324
-
Automated docking of flexible ligands: Applications of AutoDock
-
Goodsell, D.S.; Morris, G.M.; Olson, A.J. Automated docking of flexible ligands: applications of AutoDock. J. Mol. Recogn., 1996, 9, 1-5.
-
(1996)
J. Mol. Recogn.
, vol.9
, pp. 1-5
-
-
Goodsell, D.S.1
Morris, G.M.2
Olson, A.J.3
-
49
-
-
12144289984
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
-
DOI 10.1021/jm0306430
-
Friesner, R.A.; Banks, J.L.; Murphy, R.B.; Halgren, T.A.; Klicic, J.J.; Mainz, D.T.; Repasky, M.P.; Knoll, E.H.; Shelley, M.; Perry, J.K.; Shaw, D.E.; Francis, P.; Shenkin, P.S. Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy. J. Med. Chem., 2004, 47, 1739-1749. (Pubitemid 38380917)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.7
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
50
-
-
0037434582
-
Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine
-
Jain, A.N. Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine. J. Med. Chem., 2003, 46, 499-511.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 499-511
-
-
Jain, A.N.1
-
51
-
-
0028882706
-
Docking small-molecule ligands into active sites
-
Jones, G.; Willett, P. Docking small-molecule ligands into active sites. Curr. Opin. Biotechnol., 1995, 6, 652-656.
-
(1995)
Curr. Opin. Biotechnol.
, vol.6
, pp. 652-656
-
-
Jones, G.1
Willett, P.2
-
52
-
-
3242884966
-
High-throughput docking as a source of novel drug leads
-
Alvarez, J.C. High-throughput docking as a source of novel drug leads. Curr. Opin. Chem. Biol., 2004, 8, 365-370.
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 365-370
-
-
Alvarez, J.C.1
-
53
-
-
14044262243
-
Docking: Successes and challenges
-
Mohan, V.; Gibbs, A.C.; Cummings, M.D.; Jaeger, E.P.; DesJarlais, R.L. Docking: successes and challenges. Curr. Pharm. Des., 2005, 11, 323-333.
-
(2005)
Curr. Pharm. Des.
, vol.11
, pp. 323-333
-
-
Mohan, V.1
Gibbs, A.C.2
Cummings, M.D.3
Jaeger, E.P.4
Desjarlais, R.L.5
-
54
-
-
33749449880
-
Docking and scoring--theoretically easy, practically impossible?
-
Coupez, B.; Lewis, R.A. Docking and scoring--theoretically easy, practically impossible? Curr. Med. Chem., 2006, 13, 2995-3003.
-
(2006)
Curr. Med. Chem.
, vol.13
, pp. 2995-3003
-
-
Coupez, B.1
Lewis, R.A.2
-
55
-
-
33749506205
-
Methods for the prediction of protein-ligand binding sites for structure-based drug design and virtual ligand screening
-
Laurie, A.T.; Jackson, R.M. Methods for the prediction of protein-ligand binding sites for structure-based drug design and virtual ligand screening. Curr. Protein Pept. Sci., 2006, 7, 395-406.
-
(2006)
Curr. Protein Pept. Sci.
, vol.7
, pp. 395-406
-
-
Laurie, A.T.1
Jackson, R.M.2
-
56
-
-
33749513370
-
Scoring functions for protein-ligand docking
-
Jain, A.N. Scoring functions for protein-ligand docking. Curr. Protein Pept. Sci., 2006, 7, 407-420.
-
(2006)
Curr. Protein Pept. Sci.
, vol.7
, pp. 407-420
-
-
Jain, A.N.1
-
57
-
-
33646234260
-
Algorithmic Engines in Virtual Screening
-
Opera, T.I., Ed.; Wiley-VCH: Weinheim
-
Rarey, M.L., C.; Matter, H. Algorithmic Engines in Virtual Screening. In: Opera, T.I., Ed.; Methods and Principles in Medicinal Chemistry, Wiley-VCH: Weinheim, 2004, Vol. 23, pp. 59-115.
-
(2004)
Methods and Principles in Medicinal Chemistry
, vol.23
, pp. 59-115
-
-
Rarey, M.L.C.1
Matter, H.2
-
58
-
-
0036606483
-
Principles of docking: An overview of search algorithms and a guide to scoring functions
-
DOI 10.1002/prot.10115
-
Halperin, I.; Ma, B.; Wolfson, H.; Nussinov, R. Principles of docking: An overview of search algorithms and a guide to scoring functions. Proteins, 2002, 47, 409-443. (Pubitemid 34614722)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.47
, Issue.4
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
59
-
-
33846094031
-
Computational identification of inhibitors of protein-protein interactions
-
DOI 10.2174/156802607779318334
-
Zhong, S.; Macias, A.T.; MacKerell, A.D., Jr. Computational identification of inhibitors of protein-protein interactions. Curr. Top. Med. Chem., 2007, 7, 63-82. (Pubitemid 46062397)
-
(2007)
Current Topics in Medicinal Chemistry
, vol.7
, Issue.1
, pp. 63-82
-
-
Zhong, S.1
Macias, A.T.2
Mackerell Jr., A.D.3
-
60
-
-
4644349994
-
Structure-guided fragment screening for lead discovery
-
Verdonk, M.L.; Hartshorn, M.J. Structure-guided fragment screening for lead discovery. Curr. Opin. Drug Discov. Dev., 2004, 7, 404-410. (Pubitemid 44383546)
-
(2004)
Current Opinion in Drug Discovery and Development
, vol.7
, Issue.4
, pp. 404-410
-
-
Verdonk, M.L.1
Hartshorn, M.J.2
-
61
-
-
22544461068
-
Recent applications of protein crystallography and structure-guided drug design
-
DOI 10.1016/j.cbpa.2005.06.007, PII S1367593105000876, Next-Generation Therapeutics
-
Williams, S.P.; Kuyper, L.F.; Pearce, K.H. Recent applications of protein crystallography and structure-guided drug design. Curr. Opin. Chem. Biol., 2005, 9, 371-380. (Pubitemid 41019683)
-
(2005)
Current Opinion in Chemical Biology
, vol.9
, Issue.4
, pp. 371-380
-
-
Williams, S.P.1
Kuyper, L.F.2
Pearce, K.H.3
-
62
-
-
13944263886
-
Comparison of automated docking programs as virtual screening tools
-
Cummings, M.D.; DesJarlais, R.L.; Gibbs, A.C.; Mohan, V.; Jaeger, E.P. Comparison of automated docking programs as virtual screening tools. J. Med. Chem., 2005, 48, 962-976.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 962-976
-
-
Cummings, M.D.1
Desjarlais, R.L.2
Gibbs, A.C.3
Mohan, V.4
Jaeger, E.P.5
-
63
-
-
33646052849
-
Structure-based discovery and optimization of potential cancer therapeutics targeting the cell cycle
-
Thomas, M.P.; McInnes, C. Structure-based discovery and optimization of potential cancer therapeutics targeting the cell cycle. IDrugs, 2006, 9, 273-278.
-
(2006)
IDrugs
, vol.9
, pp. 273-278
-
-
Thomas, M.P.1
McInnes, C.2
-
64
-
-
33746008486
-
Rational approaches to natural-product-based drug design
-
Haustedt, L.O.; Mang, C.; Siems, K.; Schiewe, H. Rational approaches to natural-product-based drug design. Curr. Opin. Drug Discov. Devel., 2006, 9, 445-462.
-
(2006)
Curr. Opin. Drug Discov. Devel.
, vol.9
, pp. 445-462
-
-
Haustedt, L.O.1
Mang, C.2
Siems, K.3
Schiewe, H.4
-
65
-
-
33846925039
-
Structure-aided design of inhibitors of Mycobacterium tuberculosis thymidylate kinase
-
Van Calenbergh, S. Structure-aided design of inhibitors of Mycobacterium tuberculosis thymidylate kinase. Verh. K. Acad. Geneeskd. Belg., 2006, 68, 223-248.
-
(2006)
Verh. K. Acad. Geneeskd. Belg.
, vol.68
, pp. 223-248
-
-
Van Calenbergh, S.1
-
66
-
-
33646838453
-
Improved lead-finding for kinase targets using high-throughput docking
-
McInnes, C. Improved lead-finding for kinase targets using high-throughput docking. Curr. Opin. Drug Discov. Dev., 2006, 9, 339-347.
-
(2006)
Curr. Opin. Drug Discov. Dev.
, vol.9
, pp. 339-347
-
-
McInnes, C.1
-
67
-
-
3242888975
-
Integrating virtual screening in lead discovery
-
Oprea, T.I.; Matter, H. Integrating virtual screening in lead discovery. Curr. Opin. Chem. Biol., 2004, 8, 349-358.
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 349-358
-
-
Oprea, T.I.1
Matter, H.2
-
69
-
-
0037526838
-
Similarity-based approaches to virtual screening
-
Willett, P. Similarity-based approaches to virtual screening. Biochem. Soc. Trans., 2003, 31, 603-606.
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 603-606
-
-
Willett, P.1
-
70
-
-
33751246188
-
Similarity-based virtual screening using 2D fingerprints
-
Willett, P. Similarity-based virtual screening using 2D fingerprints. Drug Discov. Today, 2006, 11, 1046-1053.
-
(2006)
Drug Discov. Today
, vol.11
, pp. 1046-1053
-
-
Willett, P.1
-
71
-
-
0001680792
-
Diversity of Chemical Libraries
-
Schleyer, P.V.R.A., N. L.; Clark, T.; Gasteiger, J.; Kollman, P. A.; Schaefer III, H. F.; Schreiner, P. R., Ed. John Wiley and Sons: Chichester
-
Agrafiotis, D.K. Diversity of Chemical Libraries. In The Encyclopedia of Computational Chemistry, Schleyer, P.V.R.A., N. L.; Clark, T.; Gasteiger, J.; Kollman, P. A.; Schaefer III, H. F.; Schreiner, P. R., Ed. John Wiley and Sons: Chichester, 1998, Vol.1, pp. 742-761.
-
(1998)
The Encyclopedia of Computational Chemistry
, vol.1
, pp. 742-761
-
-
Agrafiotis, D.K.1
-
72
-
-
10344230435
-
Molecular similarity: A key technique in molecular informatics
-
Bender, A.; Glen, R.C. Molecular similarity: a key technique in molecular informatics. Org. Biomol. Chem., 2004, 2, 3204-3218.
-
(2004)
Org. Biomol. Chem.
, vol.2
, pp. 3204-3218
-
-
Bender, A.1
Glen, R.C.2
-
73
-
-
0035289779
-
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
-
Lipinski, C.A.; Lombardo, F.; Dominy, B.W.; Feeney, P.J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Deliv. Rev., 2001, 46, 3-26.
-
(2001)
Adv. Drug Deliv. Rev.
, vol.46
, pp. 3-26
-
-
Lipinski, C.A.1
Lombardo, F.2
Dominy, B.W.3
Feeney, P.J.4
-
74
-
-
0037204541
-
Computer systems for the prediction of toxicity: An update
-
Greene, N. Computer systems for the prediction of toxicity: an update. Adv. Drug Deliv. Rev., 2002, 54, 417-431.
-
(2002)
Adv. Drug Deliv. Rev.
, vol.54
, pp. 417-431
-
-
Greene, N.1
-
75
-
-
0037364162
-
ADMET in silico modelling: Towards prediction paradise?
-
van de Waterbeemd, H.; Gifford, E. ADMET in silico modelling: towards prediction paradise? Nat. Rev. Drug. Discov., 2003, 2, 192-204.
-
(2003)
Nat. Rev. Drug. Discov.
, vol.2
, pp. 192-204
-
-
Van De Waterbeemd, H.1
Gifford, E.2
-
76
-
-
16644369555
-
In silico approaches for predicting ADME properties of drugs
-
Yamashita, F.; Hashida, M. In silico approaches for predicting ADME properties of drugs. Drug. Metab. Pharmacokinet., 2004, 19, 327-338.
-
(2004)
Drug. Metab. Pharmacokinet.
, vol.19
, pp. 327-338
-
-
Yamashita, F.1
Hashida, M.2
-
77
-
-
0037707638
-
Metabolic stability for drug discovery and development: Pharmacokinetic and biochemical challenges
-
Masimirembwa, C.M.; Bredberg, U.; Andersson, T.B. Metabolic stability for drug discovery and development: pharmacokinetic and biochemical challenges. Clin. Pharmacokinet., 2003, 42, 515-528.
-
(2003)
Clin. Pharmacokinet.
, vol.42
, pp. 515-528
-
-
Masimirembwa, C.M.1
Bredberg, U.2
Andersson, T.B.3
-
78
-
-
27144435943
-
In silico predictions of blood-brain barrier penetration: Considerations to "keep in mind"
-
Goodwin, J.T.; Clark, D.E. In silico predictions of blood-brain barrier penetration: considerations to "keep in mind". J. Pharmacol. Exp. Ther., 2005, 315, 477-483.
-
(2005)
J. Pharmacol. Exp. Ther.
, vol.315
, pp. 477-483
-
-
Goodwin, J.T.1
Clark, D.E.2
-
79
-
-
1542503699
-
Computational models to predict blood-brain barrier permeation and CNS activity
-
Subramanian, G.; Kitchen, D.B. Computational models to predict blood-brain barrier permeation and CNS activity. J. Comput. Aided Mol. Des., 2003, 17, 643-664.
-
(2003)
J. Comput. Aided Mol. Des.
, vol.17
, pp. 643-664
-
-
Subramanian, G.1
Kitchen, D.B.2
-
80
-
-
5344244908
-
Chemical Similarity Searching
-
Willett, P.; Barnard, J.M.; Downs, G.M. Chemical Similarity Searching. J. Chem. Inf. Model., 1998, 38, 983-996.
-
(1998)
J. Chem. Inf. Model.
, vol.38
, pp. 983-996
-
-
Willett, P.1
Barnard, J.M.2
Downs, G.M.3
-
81
-
-
5244364312
-
The Information Content of 2D and 3D Structural Descriptors Relevant to Ligand-Receptor Binding
-
Brown, R.D.; Martin, Y.C. The Information Content of 2D and 3D Structural Descriptors Relevant to Ligand-Receptor Binding. J. Chem. Inf. Model., 1997, 37, 1-9.
-
(1997)
J. Chem. Inf. Model.
, vol.37
, pp. 1-9
-
-
Brown, R.D.1
Martin, Y.C.2
-
82
-
-
71249102239
-
-
MDL Information Systems Inc., San Leandro, CA.
-
MDL Information Systems Inc., San Leandro, CA.
-
-
-
-
83
-
-
33644963750
-
Circular fingerprints: Flexible molecular descriptors with applications from physical chemistry to ADME
-
Glen, R.C.; Bender, A.; Arnby, C.H.; Carlsson, L.; Boyer, S.; Smith, J. Circular fingerprints: flexible molecular descriptors with applications from physical chemistry to ADME. IDrugs, 2006, 9, 199-204.
-
(2006)
IDrugs
, vol.9
, pp. 199-204
-
-
Glen, R.C.1
Bender, A.2
Arnby, C.H.3
Carlsson, L.4
Boyer, S.5
Smith, J.6
-
84
-
-
71249098911
-
-
SciTegic, Inc., San Diego, CA.
-
SciTegic, Inc., San Diego, CA.
-
-
-
-
85
-
-
5544290537
-
Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): Evaluation of performance
-
Bender, A.; Mussa, H.Y.; Glen, R.C.; Reiling, S. Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): evaluation of performance. J. Chem. Inf. Comput. Sci., 2004, 44, 1708-1718.
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 1708-1718
-
-
Bender, A.1
Mussa, H.Y.2
Glen, R.C.3
Reiling, S.4
-
86
-
-
0001232509
-
On the properties of bit string-based measures of chemical similarity
-
Flower, D.R. On the properties of bit string-based measures of chemical similarity. J. Chem. Inf. Model., 1998, 38, 379-386.
-
(1998)
J. Chem. Inf. Model.
, vol.38
, pp. 379-386
-
-
Flower, D.R.1
-
87
-
-
71249099676
-
-
Daylight Chemical Information Systems Inc., Aliso Vieho, CA.
-
Daylight Chemical Information Systems Inc., Aliso Vieho, CA.
-
-
-
-
88
-
-
71249093228
-
-
Tripos Inc., St. Louis, MO.
-
Tripos Inc., St. Louis, MO.
-
-
-
-
89
-
-
33845379303
-
Atom pairs as molecular features in structure-activity studies: Definition and applications
-
Carhart, R.E.; Smith, D.H.; Venkataraghavan, R. Atom pairs as molecular features in structure-activity studies: definition and applications. J. Chem. Inf. Model., 1985, 25, 64-73.
-
(1985)
J. Chem. Inf. Model.
, vol.25
, pp. 64-73
-
-
Carhart, R.E.1
Smith, D.H.2
Venkataraghavan, R.3
-
90
-
-
0003076470
-
Topological torsion: A new molecular descriptor for SAR applications. Comparison with other descriptors
-
Nilakantan, R.; Bauman, N.; Dixon, J.S.; Venkataraghavan, R. Topological torsion: a new molecular descriptor for SAR applications. Comparison with other descriptors. J. Chem. Inf. Model., 1987, 27, 82-85.
-
(1987)
J. Chem. Inf. Model.
, vol.27
, pp. 82-85
-
-
Nilakantan, R.1
Bauman, N.2
Dixon, J.S.3
Venkataraghavan, R.4
-
91
-
-
0004976810
-
Searching for pharmacophores in large coordinate data bases and its use in drug design
-
Sheridan, R.P.; Rusinko, A., 3rd; Nilakantan, R.; Venkataraghavan, R. Searching for pharmacophores in large coordinate data bases and its use in drug design. Proc. Natl. Acad. Sci. USA, 1989, 86, 8165-8169.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 8165-8169
-
-
Sheridan, R.P.1
Rusinko III, A.2
Nilakantan, R.3
Venkataraghavan, R.4
-
92
-
-
0001577643
-
Chemical similarity using physiochemical property descriptors
-
Kearsley, S.K.; Sallamack, S.; Fluder, E.M.; Andose, J.D.; Mosley, R.T.; Sheridan, R.P. Chemical similarity using physiochemical property descriptors. J. Chem. Inf. Model., 1996, 36, 118-127.
-
(1996)
J. Chem. Inf. Model.
, vol.36
, pp. 118-127
-
-
Kearsley, S.K.1
Sallamack, S.2
Fluder, E.M.3
Andose, J.D.4
Mosley, R.T.5
Sheridan, R.P.6
-
93
-
-
0033523672
-
"Scaffoldhopping" by topological pharmacophore search: A contribution to virtual screening
-
Schneider, G.; Neidhart, W.; Giller, T.; Schmid, G. " Scaffoldhopping" by topological pharmacophore search: a contribution to virtual screening. Angew. Chem. Int. Ed. Engl., 1999, 38, 2894-2896.
-
(1999)
Angew. Chem. Int. Ed. Engl.
, vol.38
, pp. 2894-2896
-
-
Schneider, G.1
Neidhart, W.2
Giller, T.3
Schmid, G.4
-
94
-
-
0037013685
-
Scaffold hopping and optimization towards libraries of glycogen synthase kinase-3 inhibitors
-
Naerum, L.; Norskov-Lauritsen, L.; Olesen, P.H. Scaffold hopping and optimization towards libraries of glycogen synthase kinase-3 inhibitors. Bioorg. Med. Chem. Lett., 2002, 12, 1525-1528.
-
(2002)
Bioorg. Med. Chem. Lett.
, vol.12
, pp. 1525-1528
-
-
Naerum, L.1
Norskov-Lauritsen, L.2
Olesen, P.H.3
-
95
-
-
19944391612
-
Target-related affinity profiling: Telik's lead discovery technology
-
Beroza, P.; Damodaran, K.; Lum, R.T. Target-related affinity profiling: Telik's lead discovery technology. Curr. Top. Med. Chem., 2005, 5, 371-381.
-
(2005)
Curr. Top. Med. Chem.
, vol.5
, pp. 371-381
-
-
Beroza, P.1
Damodaran, K.2
Lum, R.T.3
-
96
-
-
0029240364
-
Predicting ligand binding to proteins by affinity fingerprinting
-
Kauvar, L.M.; Higgins, D.L.; Villar, H.O.; Sportsman, J.R.; Engqvist-Goldstein, A.; Bukar, R.; Bauer, K.E.; Dilley, H.; Rocke, D.M. Predicting ligand binding to proteins by affinity fingerprinting. Chem. Biol., 1995, 2, 107-118.
-
(1995)
Chem. Biol.
, vol.2
, pp. 107-118
-
-
Kauvar, L.M.1
Higgins, D.L.2
Villar, H.O.3
Sportsman, J.R.4
Engqvist-Goldstein, A.5
Bukar, R.6
Bauer, K.E.7
Dilley, H.8
Rocke, D.M.9
-
97
-
-
4544220560
-
Novel cyclooxygenase-1 inhibitors discovered using affinity fingerprints
-
Hsu, N.; Cai, D.; Damodaran, K.; Gomez, R.F.; Keck, J.G.; Laborde, E.; Lum, R.T.; Macke, T.J.; Martin, G.; Schow, S.R.; Simon, R.J.; Villar, H.O.; Wick, M.M.; Beroza, P. Novel cyclooxygenase-1 inhibitors discovered using affinity fingerprints. J. Med. Chem., 2004, 47, 4875-4880.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 4875-4880
-
-
Hsu, N.1
Cai, D.2
Damodaran, K.3
Gomez, R.F.4
Keck, J.G.5
Laborde, E.6
Lum, R.T.7
Macke, T.J.8
Martin, G.9
Schow, S.R.10
Simon, R.J.11
Villar, H.O.12
Wick, M.M.13
Beroza, P.14
-
98
-
-
0028466540
-
Comparison of Automatic Three-Dimensional Model Builders Using 639 X-ray Structures
-
Sadowski, J.; Gasteiger, J.; Klebe, G. Comparison of Automatic Three-Dimensional Model Builders Using 639 X-ray Structures. J. Chem. Inf. Model., 1994, 34, 1000-1008.
-
(1994)
J. Chem. Inf. Model.
, vol.34
, pp. 1000-1008
-
-
Sadowski, J.1
Gasteiger, J.2
Klebe, G.3
-
99
-
-
0001797110
-
Rapid generation of high quality approximate 3D molecular structures
-
Pearlman, R.S. Rapid generation of high quality approximate 3D molecular structures. Chem. Des. Auto. News, 1987, 1-7.
-
(1987)
Chem. Des. Auto. News
, pp. 1-7
-
-
Pearlman, R.S.1
-
100
-
-
0000465937
-
Diversity profiling and design using 3D pharmacophores: Pharmacophore-derived queries (PDQ)
-
Pickett, S.D.; Mason, J.S.; McLay, I.M. Diversity profiling and design using 3D pharmacophores: pharmacophore-derived queries (PDQ). J. Chem. Inf. Model., 1996, 36, 1214-1223.
-
(1996)
J. Chem. Inf. Model.
, vol.36
, pp. 1214-1223
-
-
Pickett, S.D.1
Mason, J.S.2
McLay, I.M.3
-
101
-
-
0038170311
-
Similarity metrics for ligands reflecting the similarity of the target proteins
-
Schuffenhauer, A.; Floersheim, P.; Acklin, P.; Jacoby, E. Similarity metrics for ligands reflecting the similarity of the target proteins. J. Chem. Inf. Comput. Sci., 2003, 43, 391-405.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 391-405
-
-
Schuffenhauer, A.1
Floersheim, P.2
Acklin, P.3
Jacoby, E.4
-
102
-
-
21044445455
-
New allosteric modulators of metabotropic glutamate receptor 5 (mGluR5) found by ligand-based virtual screening
-
DOI 10.1002/cbic.200400332
-
Renner, S.; Noeske, T.; Parsons, C.G.; Schneider, P.; Weil, T.; Schneider, G. New allosteric modulators of metabotropic glutamate receptor 5 (mGluR5) found by ligand-based virtual screening. Chembiochem., 2005, 6, 620-625. (Pubitemid 40873758)
-
(2005)
ChemBioChem
, vol.6
, Issue.4
, pp. 620-625
-
-
Renner, S.1
Noeske, T.2
Parsons, C.G.3
Schneider, P.4
Weil, T.5
Schneider, G.6
-
103
-
-
0037363560
-
Efficient generation, storage, and manipulation of fully flexible pharmacophore multiplets and their use in 3-D similarity searching
-
Abrahamian, E.; Fox, P.C.; Naerum, L.; Christensen, I.T.; Thogersen, H.; Clark, R.D. Efficient generation, storage, and manipulation of fully flexible pharmacophore multiplets and their use in 3-D similarity searching. J. Chem. Inf. Comput. Sci., 2003, 43, 458-468.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 458-468
-
-
Abrahamian, E.1
Fox, P.C.2
Naerum, L.3
Christensen, I.T.4
Thogersen, H.5
Clark, R.D.6
-
104
-
-
33846212271
-
Comparison of shape-matching and docking as virtual screening tools
-
Hawkins, P.C.; Skillman, A.G.; Nicholls, A. Comparison of shape-matching and docking as virtual screening tools. J. Med. Chem., 2007, 50, 74-82.
-
(2007)
J. Med. Chem.
, vol.50
, pp. 74-82
-
-
Hawkins, P.C.1
Skillman, A.G.2
Nicholls, A.3
-
105
-
-
27444434546
-
Scaffold hopping with molecular field points: Identification of a cholecystokinin-2 (CCK2) receptor pharmacophore and its use in the design of a prototypical series of pyrrole- And imidazole-based CCK2 antagonists
-
Low, C.M.; Buck, I.M.; Cooke, T.; Cushnir, J.R.; Kalindjian, S.B.; Kotecha, A.; Pether, M.J.; Shankley, N.P.; Vinter, J.G.; Wright, L. Scaffold hopping with molecular field points: identification of a cholecystokinin-2 (CCK2) receptor pharmacophore and its use in the design of a prototypical series of pyrrole- and imidazole-based CCK2 antagonists. J. Med. Chem., 2005, 48, 6790-6802.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 6790-6802
-
-
Low, C.M.1
Buck, I.M.2
Cooke, T.3
Cushnir, J.R.4
Kalindjian, S.B.5
Kotecha, A.6
Pether, M.J.7
Shankley, N.P.8
Vinter, J.G.9
Wright, L.10
-
106
-
-
0842325913
-
Ligand-based structural hypotheses for virtual screening
-
Jain, A.N. Ligand-based structural hypotheses for virtual screening. J. Med. Chem., 2004, 47, 947-961.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 947-961
-
-
Jain, A.N.1
-
107
-
-
0037472770
-
Topomer CoMFA: A design methodology for rapid lead optimization
-
Cramer, R.D. Topomer CoMFA: a design methodology for rapid lead optimization. J. Med. Chem., 2003, 46, 374-388.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 374-388
-
-
Cramer, R.D.1
-
108
-
-
80051768265
-
Leadhopping - And beyond
-
Cramer, R.D. Leadhopping - and beyond. Exp. Opin. Drug Discov., 2006, 1, 311-321
-
(2006)
Exp. Opin. Drug Discov.
, vol.1
, pp. 311-321
-
-
Cramer, R.D.1
-
109
-
-
0001109246
-
A fast method of molecular shape comparison: A simple application of a Gaussian description of molecular shape
-
Grant, A.J.; Gallardo, M.A.; Pickup, B.T. A fast method of molecular shape comparison: A simple application of a Gaussian description of molecular shape. J. Comput. Chem., 1996, 17, 1653-1666.
-
(1996)
J. Comput. Chem.
, vol.17
, pp. 1653-1666
-
-
Grant, A.J.1
Gallardo, M.A.2
Pickup, B.T.3
-
110
-
-
33646227896
-
Molecular field extrema as descriptors of biological activity: Definition and validation
-
Cheeseright, T.; Mackey, M.; Rose, S.; Vinter, A. Molecular field extrema as descriptors of biological activity: definition and validation. J. Chem. Inf. Model., 2006, 46, 665-676.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 665-676
-
-
Cheeseright, T.1
Mackey, M.2
Rose, S.3
Vinter, A.4
-
111
-
-
0036010701
-
Dbtop: Topomer similarity searching of conventional structure databases
-
Cramer, R.D.; Jilek, R.J.; Andrews, K.M. Dbtop: topomer similarity searching of conventional structure databases. J. Mol. Graph. Model., 2002, 20, 447-462.
-
(2002)
J. Mol. Graph. Model.
, vol.20
, pp. 447-462
-
-
Cramer, R.D.1
Jilek, R.J.2
Andrews, K.M.3
-
112
-
-
0036249270
-
Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings
-
Holliday, J.D.; Hu, C.Y.; Willett, P. Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings. Comb. Chem. High Throughput Screen., 2002, 5, 155-166.
-
(2002)
Comb. Chem. High Throughput Screen.
, vol.5
, pp. 155-166
-
-
Holliday, J.D.1
Hu, C.Y.2
Willett, P.3
-
113
-
-
0037835585
-
Analysis and display of the size dependence of chemical similarity coefficients
-
Holliday, J.D.; Salim, N.; Whittle, M.; Willett, P. Analysis and display of the size dependence of chemical similarity coefficients. J. Chem. Inf. Comput. Sci., 2003, 43, 819-828.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 819-828
-
-
Holliday, J.D.1
Salim, N.2
Whittle, M.3
Willett, P.4
-
115
-
-
33646249968
-
New methods for ligand-based virtual screening: Use of data fusion and machine learning to enhance the effectiveness of similarity searching
-
Hert, J.; Willett, P.; Wilton, D.J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. New methods for ligand-based virtual screening: use of data fusion and machine learning to enhance the effectiveness of similarity searching. J. Chem. Inf. Model., 2006, 46, 462-470.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 462-470
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
116
-
-
33646250166
-
Virtual screening using binary kernel discrimination: Analysis of pesticide data
-
Wilton, D.J.; Harrison, R.F.; Willett, P.; Delaney, J.; Lawson, K.; Mullier, G. Virtual screening using binary kernel discrimination: analysis of pesticide data. J. Chem. Inf. Model., 2006, 46, 471-477.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 471-477
-
-
Wilton, D.J.1
Harrison, R.F.2
Willett, P.3
Delaney, J.4
Lawson, K.5
Mullier, G.6
-
117
-
-
33644784708
-
Classification of dopamine, serotonin, and dual antagonists by decision trees
-
Kim, H.J.; Choo, H.; Cho, Y.S.; Koh, H.Y.; No, K.T.; Pae, A.N. Classification of dopamine, serotonin, and dual antagonists by decision trees. Bioorg. Med. Chem., 2006, 14, 2763-2770.
-
(2006)
Bioorg. Med. Chem.
, vol.14
, pp. 2763-2770
-
-
Kim, H.J.1
Choo, H.2
Cho, Y.S.3
Koh, H.Y.4
No, K.T.5
Pae, A.N.6
-
118
-
-
3242690906
-
Partitioning in binary-transformed chemical descriptor spaces
-
Godden, J.W.; Bajorath, J. Partitioning in binary-transformed chemical descriptor spaces. Methods Mol. Biol., 2004, 275, 291-300.
-
(2004)
Methods Mol. Biol.
, vol.275
, pp. 291-300
-
-
Godden, J.W.1
Bajorath, J.2
-
119
-
-
33750350511
-
Improved naive Bayesian modeling of numerical data for absorption, distribution, metabolism and excretion (ADME) property prediction
-
Klon, A.E.; Lowrie, J.F.; Diller, D.J. Improved naive Bayesian modeling of numerical data for absorption, distribution, metabolism and excretion (ADME) property prediction. J. Chem. Inf. Model., 2006, 46, 1945-1956.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 1945-1956
-
-
Klon, A.E.1
Lowrie, J.F.2
Diller, D.J.3
-
120
-
-
33646487003
-
An accurate and interpretable bayesian classification model for prediction of HERG liability
-
Sun, H. An accurate and interpretable bayesian classification model for prediction of HERG liability. ChemMedChem, 2006, 1, 315-322.
-
(2006)
ChemMedChem
, vol.1
, pp. 315-322
-
-
Sun, H.1
-
121
-
-
2942715359
-
GPCR-tailored pharmacophore pattern recognition of small molecular ligands
-
von Korff, M.; Steger, M. GPCR-tailored pharmacophore pattern recognition of small molecular ligands. J. Chem. Inf. Comput. Sci., 2004, 44, 1137-1147.
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 1137-1147
-
-
Von Korff, M.1
Steger, M.2
-
122
-
-
33845760580
-
Applications of self-organizing neural networks in virtual screening and diversity selection
-
Selzer, P.; Ertl, P. Applications of self-organizing neural networks in virtual screening and diversity selection. J. Chem. Inf. Model., 2006, 46, 2319-2323
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 2319-2323
-
-
Selzer, P.1
Ertl, P.2
-
123
-
-
27444433232
-
Extraction and visualization of potential pharmacophore points using support vector machines: Application to ligand-based virtual screening for COX-2 inhibitors
-
Franke, L.; Byvatov, E.; Werz, O.; Steinhilber, D.; Schneider, P.; Schneider, G. Extraction and visualization of potential pharmacophore points using support vector machines: application to ligand-based virtual screening for COX-2 inhibitors. J. Med. Chem., 2005, 48, 6997-7004.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 6997-7004
-
-
Franke, L.1
Byvatov, E.2
Werz, O.3
Steinhilber, D.4
Schneider, P.5
Schneider, G.6
-
124
-
-
33244481311
-
Screening for new antidepressant leads of multiple activities by support vector machines
-
Lepp, Z.; Kinoshita, T.; Chuman, H. Screening for new antidepressant leads of multiple activities by support vector machines. J. Chem. Inf. Model., 2006, 46, 158-167.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 158-167
-
-
Lepp, Z.1
Kinoshita, T.2
Chuman, H.3
-
127
-
-
17144391806
-
Identification and classification of GPCR ligands using self-organizing neural networks
-
Selzer, P.; Ertl, P. Identification and classification of GPCR ligands using self-organizing neural networks. QSAR Comb. Sci., 2005, 24, 270-276.
-
(2005)
QSAR Comb. Sci.
, vol.24
, pp. 270-276
-
-
Selzer, P.1
Ertl, P.2
-
128
-
-
34147159665
-
-
Kaiser, D.; Terfloth, L.; Kopp, S.; Schulz, J.; de Laet, R.; Chiba, P.; Ecker, G.F.; Gasteiger, J. Self-organizing maps for identification of new inhibitors of P-glycoprotein. J. Med. Chem., 2007, 50, 1698-1702.
-
(2007)
Self-organizing Maps for Identification of New Inhibitors of P-glycoprotein. J. Med. Chem.
, vol.50
, pp. 1698-1702
-
-
Kaiser, D.1
Terfloth, L.2
Kopp, S.3
Schulz, J.4
De Laet, R.5
Chiba, P.6
Ecker, G.F.7
Gasteiger, J.8
-
129
-
-
11144336199
-
The Nature of Statistical Learning Theory
-
Vapnik, V. The Nature of Statistical Learning Theory. Springer- Verlag: Berlin, 1995.
-
(1995)
Springer- Verlag: Berlin
-
-
Vapnik, V.1
-
130
-
-
39449138498
-
Receptor-based virtual ligand screening for the identification of novel CDC25 phosphatase inhibitors
-
Montes, M.; Braud, E.; Miteva, M.A.; Goddard, M.L.; Mondesert, O.; Kolb, S.; Brun, M.P.; Ducommun, B.; Garbay, C.; Villoutreix, B.O. Receptor-based virtual ligand screening for the identification of novel CDC25 phosphatase inhibitors. J. Chem. Inf. Model., 2008, 48, 157-165.
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 157-165
-
-
Montes, M.1
Braud, E.2
Miteva, M.A.3
Goddard, M.L.4
Mondesert, O.5
Kolb, S.6
Brun, M.P.7
Ducommun, B.8
Garbay, C.9
Villoutreix, B.O.10
-
132
-
-
71249114998
-
-
Accelrys, Inc. San Diego, 9685 Scranton Road, CA 92121.
-
Accelrys, Inc. San Diego, 9685 Scranton Road, CA 92121.
-
-
-
-
133
-
-
33747254345
-
Identification of chemically diverse Chk1 inhibitors by receptor-based virtual screening
-
Foloppe, N.; Fisher, L.M.; Howes, R.; Potter, A.; Robertson, A.G.; Surgenor, A.E. Identification of chemically diverse Chk1 inhibitors by receptor-based virtual screening. Bioorg. Med. Chem., 2006, 14, 4792-4802.
-
(2006)
Bioorg. Med. Chem.
, vol.14
, pp. 4792-4802
-
-
Foloppe, N.1
Fisher, L.M.2
Howes, R.3
Potter, A.4
Robertson, A.G.5
Surgenor, A.E.6
-
134
-
-
4043058000
-
Validation of an empirical RNA-ligand scoring function for fast flexible docking using Ribodock
-
Morley, S.D.; Afshar, M. Validation of an empirical RNA-ligand scoring function for fast flexible docking using Ribodock. J. Comput. Aided Mol. Des., 2004, 18, 189-208.
-
(2004)
J. Comput. Aided Mol. Des.
, vol.18
, pp. 189-208
-
-
Morley, S.D.1
Afshar, M.2
-
135
-
-
0034677597
-
The 1.7 a crystal structure of human cell cycle checkpoint kinase Chk1: Implications for Chk1 regulation
-
Chen, P.; Luo, C.; Deng, Y.; Ryan, K.; Register, J.; Margosiak, S.; Tempczyk-Russell, A.; Nguyen, B.; Myers, P.; Lundgren, K.; Kan, C.C.; O'Connor, P.M. The 1.7 A crystal structure of human cell cycle checkpoint kinase Chk1: implications for Chk1 regulation. Cell, 2000, 100, 681-692.
-
(2000)
Cell
, vol.100
, pp. 681-692
-
-
Chen, P.1
Luo, C.2
Deng, Y.3
Ryan, K.4
Register, J.5
Margosiak, S.6
Tempczyk-Russell, A.7
Nguyen, B.8
Myers, P.9
Lundgren, K.10
Kan, C.C.11
O'Connor, P.M.12
-
136
-
-
71249128422
-
Structure-based virtual ligand screening: Recent success stories
-
Villoutreix, B.O.; Eudes, R.; Miteva, M.A. Structure-based virtual ligand screening: recent success stories. Comb. Chem. High Throughput Screen., 2009, 12, xx.
-
(2009)
Comb. Chem. High Throughput Screen.
, vol.12
-
-
Villoutreix, B.O.1
Eudes, R.2
Miteva, M.A.3
-
137
-
-
71249096486
-
Protein-protein interaction inhibition (2P2I): Fewer and fewer undruggable targets
-
Betzi, S.; Guerlesquin, F.; Morelli, X. Protein-protein interaction inhibition (2P2I): fewer and fewer undruggable targets. Comb. Chem. High Throughput Screen., 2009, 12, xx.
-
(2009)
Comb. Chem. High Throughput Screen.
, vol.12
-
-
Betzi, S.1
Guerlesquin, F.2
Morelli, X.3
-
138
-
-
36949016006
-
Rational drug design
-
Reddy, M.R. Rational drug design. Curr. Pharm. Des., 2007, 13, 3453.
-
(2007)
Curr. Pharm. Des.
, vol.13
, pp. 3453
-
-
Reddy, M.R.1
-
139
-
-
67349104587
-
Targeted scoring functions for virtual screening
-
Seifert, M.H. Targeted scoring functions for virtual screening. Drug Discov. Today, 2009, 14, 562-569.
-
(2009)
Drug Discov. Today
, vol.14
, pp. 562-569
-
-
Seifert, M.H.1
-
140
-
-
33744551693
-
Structure-based virtual screening of chemical libraries for drug discovery
-
Ghosh, S.; Nie, A.; An, J.; Huang, Z. Structure-based virtual screening of chemical libraries for drug discovery. Curr. Opin. Chem. Biol., 2006, 10, 194-202.
-
(2006)
Curr. Opin. Chem. Biol.
, vol.10
, pp. 194-202
-
-
Ghosh, S.1
Nie, A.2
An, J.3
Huang, Z.4
-
141
-
-
3843151671
-
Design, synthesis, and biological evaluation of new cyclic disulfide decapeptides that inhibit the binding of AP-1 to DNA
-
Tsuchida, K.; Chaki, H.; Takakura, T.; Yokotani, J.; Aikawa, Y.; Shiozawa, S.; Gouda, H.; Hirono, S. Design, synthesis, and biological evaluation of new cyclic disulfide decapeptides that inhibit the binding of AP-1 to DNA. J. Med. Chem., 2004, 47, 4239-4246.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 4239-4246
-
-
Tsuchida, K.1
Chaki, H.2
Takakura, T.3
Yokotani, J.4
Aikawa, Y.5
Shiozawa, S.6
Gouda, H.7
Hirono, S.8
-
142
-
-
34047135626
-
First pharmacophore-based identification of androgen receptor down-regulating agents: Discovery of potent anti-prostate cancer agents
-
Purushottamachar, P.; Khandelwal, A.; Chopra, P.; Maheshwari, N.; Gediya, L.K.; Vasaitis, T.S.; Bruno, R.D.; Clement, O.O.; Njar, V.C. First pharmacophore-based identification of androgen receptor down-regulating agents: discovery of potent anti-prostate cancer agents. Bioorg. Med. Chem., 2007, 15, 3413-3421.
-
(2007)
Bioorg. Med. Chem.
, vol.15
, pp. 3413-3421
-
-
Purushottamachar, P.1
Khandelwal, A.2
Chopra, P.3
Maheshwari, N.4
Gediya, L.K.5
Vasaitis, T.S.6
Bruno, R.D.7
Clement, O.O.8
Njar, V.C.9
-
143
-
-
34247842959
-
Ligand based virtual screening and biological evaluation of inhibitors of chorismate mutase (Rv1885c) from Mycobacterium tuberculosis H37Rv
-
Agrawal, H.; Kumar, A.; Bal, N.C.; Siddiqi, M.I.; Arora, A. Ligand based virtual screening and biological evaluation of inhibitors of chorismate mutase (Rv1885c) from Mycobacterium tuberculosis H37Rv. Bioorg. Med. Chem. Lett., 2007, 17, 3053-3058.
-
(2007)
Bioorg. Med. Chem. Lett.
, vol.17
, pp. 3053-3058
-
-
Agrawal, H.1
Kumar, A.2
Bal, N.C.3
Siddiqi, M.I.4
Arora, A.5
-
144
-
-
71249122524
-
-
BioSolveIT GmbH, An der Ziegelei 75, 53757 Sankt Augustin, Germany.
-
BioSolveIT GmbH, An der Ziegelei 75, 53757 Sankt Augustin, Germany.
-
-
-
-
145
-
-
33947727830
-
Identification of nonpeptide CCR5 receptor agonists by structure-based virtual screening
-
Kellenberger, E.; Springael, J.Y.; Parmentier, M.; Hachet-Haas, M.; Galzi, J.L.; Rognan, D. Identification of nonpeptide CCR5 receptor agonists by structure-based virtual screening. J. Med. Chem., 2007, 50, 1294-1303.
-
(2007)
J. Med. Chem.
, vol.50
, pp. 1294-1303
-
-
Kellenberger, E.1
Springael, J.Y.2
Parmentier, M.3
Hachet-Haas, M.4
Galzi, J.L.5
Rognan, D.6
-
146
-
-
0035918313
-
The TXP motif in the second transmembrane helix of CCR5. a structural determinant of chemokine-induced activation
-
Govaerts, C.; Blanpain, C.; Deupi, X.; Ballet, S.; Ballesteros, J.A.; Wodak, S.J.; Vassart, G.; Pardo, L.; Parmentier, M. The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation. J. Biol. Chem., 2001, 276, 13217-13225.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 13217-13225
-
-
Govaerts, C.1
Blanpain, C.2
Deupi, X.3
Ballet, S.4
Ballesteros, J.A.5
Wodak, S.J.6
Vassart, G.7
Pardo, L.8
Parmentier, M.9
-
147
-
-
0037449732
-
Activation of CCR5 by chemokines involves an aromatic cluster between transmembrane helices 2 and 3
-
Govaerts, C.; Bondue, A.; Springael, J.Y.; Olivella, M.; Deupi, X.; Le Poul, E.; Wodak, S.J.; Parmentier, M.; Pardo, L.; Blanpain, C. Activation of CCR5 by chemokines involves an aromatic cluster between transmembrane helices 2 and 3. J. Biol. Chem., 2003, 278, 1892-1903.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 1892-1903
-
-
Govaerts, C.1
Bondue, A.2
Springael, J.Y.3
Olivella, M.4
Deupi, X.5
Le Poul, E.6
Wodak, S.J.7
Parmentier, M.8
Pardo, L.9
Blanpain, C.10
-
148
-
-
0041919542
-
Improved protein-ligand docking using GOLD
-
Verdonk, M.L.; Cole, J.C.; Hartshorn, M.J.; Murray, C.W.; Taylor, R.D. Improved protein-ligand docking using GOLD. Proteins, 2003, 52, 609-623.
-
(2003)
Proteins
, vol.52
, pp. 609-623
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
149
-
-
33745645832
-
Discovery of a nanomolar inhibitor of the human murine double minute 2 (MDM2)-p53 interaction through an integrated, virtual database screening strategy
-
Lu, Y.; Nikolovska-Coleska, Z.; Fang, X.; Gao, W.; Shangary, S.; Qiu, S.; Qin, D.; Wang, S. Discovery of a nanomolar inhibitor of the human murine double minute 2 (MDM2)-p53 interaction through an integrated, virtual database screening strategy. J. Med. Chem., 2006, 49, 3759-3762.
-
(2006)
J. Med. Chem.
, vol.49
, pp. 3759-3762
-
-
Lu, Y.1
Nikolovska-Coleska, Z.2
Fang, X.3
Gao, W.4
Shangary, S.5
Qiu, S.6
Qin, D.7
Wang, S.8
-
150
-
-
0036489451
-
A web-based 3D-database pharmacophore searching tool for drug discovery
-
Fang, X.; Wang, S. A web-based 3D-database pharmacophore searching tool for drug discovery. J. Chem. Inf. Comput. Sci., 2002, 42, 192-198.
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 192-198
-
-
Fang, X.1
Wang, S.2
-
151
-
-
10744221485
-
In vivo activation of the p53 pathway by small-molecule antagonists of MDM2
-
Vassilev, L.T.; Vu, B.T.; Graves, B.; Carvajal, D.; Podlaski, F.; Filipovic, Z.; Kong, N.; Kammlott, U.; Lukacs, C.; Klein, C.; Fotouhi, N.; Liu, E.A. In vivo activation of the p53 pathway by small-molecule antagonists of MDM2. Science, 2004, 303, 844-848.
-
(2004)
Science
, vol.303
, pp. 844-848
-
-
Vassilev, L.T.1
Vu, B.T.2
Graves, B.3
Carvajal, D.4
Podlaski, F.5
Filipovic, Z.6
Kong, N.7
Kammlott, U.8
Lukacs, C.9
Klein, C.10
Fotouhi, N.11
Liu, E.A.12
-
152
-
-
0037452709
-
Binding of small molecules to an adaptive protein-protein interface
-
Arkin, M.R.; Randal, M.; DeLano, W.L.; Hyde, J.; Luong, T.N.; Oslob, J.D.; Raphael, D.R.; Taylor, L.; Wang, J.; McDowell, R.S.; Wells, J.A.; Braisted, A.C. Binding of small molecules to an adaptive protein-protein interface. Proc. Natl. Acad. Sci. U.S.A., 2003, 100, 1603-1608.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 1603-1608
-
-
Arkin, M.R.1
Randal, M.2
Delano, W.L.3
Hyde, J.4
Luong, T.N.5
Oslob, J.D.6
Raphael, D.R.7
Taylor, L.8
Wang, J.9
McDowell, R.S.10
Wells, J.A.11
Braisted, A.C.12
-
153
-
-
3142781225
-
Small-molecule inhibitors of proteinprotein interactions: Progressing towards the dream
-
Arkin, M.R.; Wells, J.A. Small-molecule inhibitors of proteinprotein interactions: progressing towards the dream. Nat. Rev. Drug Discov., 2004, 3, 301-317.
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, pp. 301-317
-
-
Arkin, M.R.1
Wells, J.A.2
|