Genomic databases and the search of protein targets for protozoan parasites

Current Drug Targets

Volumn 10, Issue 3, 2009, Pages 240-245

  Timmers, Luís Fernando S M ^a   Pauli, Ivani ^a   Barcellos, Guy Barros ^a   Rocha, Kelen Beiestorf ^a   Caceres, Rafael Andrade ^a   de Azevedo Jr , Walter Filgueira ^a   Soares, Milena Botelho Pereira ^b,c  

^a PONTIFICAL CATHOLIC UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

^b INSTITUTO OSWALDO CRUZ   (Brazil)

^c HOSPITAL SÃO RAFAEL   (Brazil)

Author keywords

Apicomplexa; Cryptosporidium parvum; Databases; Genomes; Leishmania spp.; Plasmodium falciparum; Protozoan parasites; Toxoplasma gondii; Trypanosoma cruzi

Indexed keywords

BENZNIDAZOLE;

APICOMPLEXA; CHAGAS DISEASE; CRYPTOSPORIDIUM PARVUM; GENETIC DATABASE; GENOME ANALYSIS; HOST PARASITE INTERACTION; HUMAN; LEISHMANIA; MALARIA; PLASMODIUM FALCIPARUM; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN STRUCTURE; PROTEIN TARGETING; PROTOZOAL GENETICS; PROTOZOON; REVIEW; TOXOPLASMA GONDII; TRYPANOSOMA CRUZI;

ANIMALS; ANTIPROTOZOAL AGENTS; DATABASES, GENETIC; DRUG DELIVERY SYSTEMS; GENOME, PROTOZOAN; HUMANS; PROTOZOA; PROTOZOAN INFECTIONS;

EID: 65549135039     PISSN: 13894501     EISSN: None     Source Type: Journal    
DOI: 10.2174/138945009787581195     Document Type: Review

References (90)

1. Cooper, R.A. and Carucci, D.J. (2004) Curr. Drug Targets Infect. Disord., 4(1), 41-51.
2. Pereira, J.H.; Vasconcelos, I.B.; Oliveira, J.S.; Caceres, R.A.; De Azevedo Jr., W.F.; Basso, L.A. and Santos, D.S. (2007) Curr. Drug Targets, 8(3), 459-468.
3. Pauli, I.; Caceres, R.A. and De Azevedo Jr., W.F. (2008) Bioorg. Med. Chem., 16(17), 8098-8108.
4. Arcuri, H.A.; Canduri, F.; Pereira, J.H.; da Silveira, N.J.F.; Câmara Jr., J.C.; de Oliveira, J.S.; Basso, L.A.; Palma, M.S.; Santos, D.S. and De Azevedo Jr., W.F. (2004) Biochem. Biophys. Res. Commun., 320(3), 979-991.
5. Pereira, J.H.; Oliveira, J.S.; Canduri, F.; Dias, M.V.B.; Palma, M.S.; Basso, L.A.; Santos, D.S. and De Azevedo, W.F. (2004) Acta.Crystallogr. Sect. D.-Biol. Crystallogr., 60, 2310-2319.
6. Borges, J.C.; Pereira, J.H.; Vasconcelos, I.B.; dos Santos, G.C.; Olivieri, J.R.; Ramos, C.H.I.; Palma, M.S.; Basso, L.A.; Santos, D.S. and De Azevedo Jr., W.F. (2006) Arch. Biochem. Biophys., 452(2), 156-164.
7. Arcuri, H.A.; Borges, J.C.; Fonseca, I.O.; Pereira, J.H.; Neto, J.R.; Basso, L.A.; Santos, D.S. and De Azevedo, W.F. Jr. (2008) Proteins, 72(2), 720-730.
8. Dias, M.V.; Borges, J.C.; Ely, F.; Pereira, J.H.; Canduri, F.; Ramos, C.H.; Frazzon, J.; Palma, M.S.; Basso, L.A.; Santos, D.S. and De Azevedo, W.F. Jr. (2006) J. Struct. Biol., 154(2), 130-143.
9. Dias, M.V.B.; Faim, L.M.; Vasconcelos, I.B.; Oliveira, J.S.; Basso, L.A.; Santos, D.S. and De Azevedo Jr., W.F. (2007) Acta Crystallograph. Sect. F Struct. Biol. Cryst. Commun., 63(1), 1-6.
10. Marques, M.R.; Pereira, J.H.; Oliveira, J.S.; Basso, L.A.; Santos, D.S.; De Azevedo Jr., W.F. and Palma, M.S. (2007) Curr. Drug Targets, 8(3), 445-457.
11. Dias, M.V.B.; Ely, F.; Palma, M.S.; De Azevedo Jr., W.F.; Basso, L.A. and Santos, D.S. (2007) Curr. Drug Targets, 8(3), 437-444.
12. Marques, M.R.; Vaso, A.; Neto, J.R.; Fossey, M.A.; Oliveira, J.S.; Basso, L.A.; dos Santos, D.S.; De Azevedo Jr., W.F. and Palma, M.S. (2008) Biochemistry, 47(28), 7509-7522.
13. Pereira, J.H.; Canduri, F.; de Oliveira, J.S.; Silveira, N.J.F.; Basso, L.A.; Palma, M.S. De Azevedo, W.F. and Santos, D.S. (2003) Biochem. Biophys. Res. Commun., 312(3), 608-614.
14. De Azevedo Jr., W.F.; de Oliveira, J.S.; Basso, L.A.; Palma, M.S.; Pereira, J.H.; Canduri, F. and Santos, D.M. (2002) Biochem. Biophys. Res. Commun., 295(1), 142-148.
15. Caceres, R.A.; Saraiva Timmers, L.F.; Dias, R.; Basso, L.A.; Santos, D.S. and De Azevedo Jr., W.F. (2008) Bioorg Med Chem., 16(9), 4984-4993.
16. De Azevedo Jr., W.F.; Canduri, F.; Dos Santos, D.M.; Pereira, J.H.; Dias, M.V.B.; Silva, R.G.; Mendes, M.A.; Basso, L.A.; Palma, M.S. and Santos, D.S. (2003) Biochem. Biophys. Res. Commun., 309(4), 917-922.
17. Canduri, F.; Fadel, V.; Dias, M.V.B.; Basso, L.A.; Palma, M.S.; Santos, D.S. and De Azevedo, W.F.Jr. (2005) Biochem. Biophys. Res. Commun., 326(3), 335-338.
18. Canduri, F.; Silva, R.G.; dos Santos, D.M.; Palma, M.S.; Basso, L.A.; Santos, D.S. and De Azevedo, W.F.Jr. (2005) Acta Crystallogr. D Biol. Crystallogr., 61(7), 856-862.
19. Nolasco, D.O.; Canduri, F.; Pereira, J.H.; Cortinoz, J.R.; Palma, M.S.; Oliveira, J.S.; Basso, L.A.; De Azevedo, W.F.Jr. and Santos, D.S. (2004) Biochem. Biophys. Res. Commun., 324(2), 789-794.
20. Canduri, F.; Fadel, V.; Basso, L.A.; Palma, M.S.; Santos, D.S. and De Azevedo, W.F.Jr. (2005) Biochem. Biophys. Res. Commun., 327(3), 646-649.
21. Silva, R.G.; Pereira, J.H.; Canduri, F.; De Azevedo, W.F.Jr.; Basso, L.A. and Santos, D.S. (2005) Arch. Biochem. Biophys., 442(1), 49-58.
22. Timmers, L.F.S.M.; Caceres, R.A.; Vivan, A.L.; Gava, L.M.; Dias, R.; Ducati, R.G.; Basso, L.A.; Santos, D.S. and De Azevedo, W.F.Jr. (2008) Arch. Biochem. Biophys., 479, 28-38.
23. Da Silveira, N.J.F.; Uchoa, H.B.; Canduri, F.; Pereira, J.H.; Camara, Jr.; Basso, L.A.; Palma, M.S.; Santos, D.S. and De Azevedo Jr., W.F. (2004) Biochem. Biophys. Res. Commun., 322(4), 100-104.
24. Canduri, F.; dos Santos, D.M.; Silva, R.G.; Mendes, M.A.; Basso, L.A.; Palma, M.S.; De Azevedo, W.F. and Santos, D.S. (2004) Biochem. Biophys. Res. Commun., 313(4), 907-914.
25. De Azevedo Jr., W.F.; Canduri, F.; dos Santos, D.M.; Pereira, J.H.; Silva, R.G.; Mendes, M.A.; Basso, L.A.; Palma, M.S. and Santos, D.S. (2003) Biochem. Biophys. Res. Commun., 312(3), 767-772.
26. De Azevedo Jr., W.F.; Santos, G.C.; Santos, D.M.; Dos Santos, D.M.; Olivieri, J.R.; Canduri, F.; Silva, R.G.; Basso, L.A.; Renard, G.; Fonseca, I.O.; Mendes, M.A.; Palma, M.S. and Santos, D.S. (2003) Biochem. Biophys. Res. Commun., 309(4), 923-928.
27. Santos, D.M.; Canduri, F.; Pereira, J.H.; Dias, M.V.B.; Silva, R.G.; Mendes, M.A.; Palma, M.S.; Basso, L.A.; De Azevedo Jr., W.F. and Santos, D.S. (2003) Biochem. Biophys. Res. Commun., 308(3), 553-559.
28. De Azevedo Jr., W.F.; Canduri, F.; Santos, D.M.; Silva, R.G.; Oliveira, J.S.; Carvalho, L.P.S.; Basso, L.A.; Mendes, M.A.; Palma, M.S. and Santos, D.S. (2003) Biochem. Biophys. Res. Commun., 308(3), 545-552.
29. Timmers, L.F.; Caceres, R.A.; Basso, L.A.; Santos, D.S. and De Azevedo, W.F.Jr. (2008) Protein Pept. Lett., 15(8), 843-849.
30. Pauli, I.; Timmers, L.F.S.M.; Caceres, R.A.; Basso, L.A.; Santos, D.S. and De Azevedo, W.F.Jr. (2009) J. Mol. Model., (In Press).
31. Canduri, F.; Perez, P.C.; Caceres, R.A. and De Azevedo, W.F.Jr. (2008) Med. Chem., 4(3), 210-218.
32. Datta, A.K.; Datta, R. and Sen, B. (2008) Adv. Exp. Med. Biol., 625, 116-132.
33. Heiges, M.; Wang, H.; Robinson, E.; Aurrecoechea, C.; Gao, X.; Kaluskar, N.; Rhodes, P.; Wang, S.; He, C.Z.; Su, Y.; Miller, J.; Kraemer, E. and Kissinger, J.C. (2006) Nucleic Acids Res., 34, D419-D422.
34. Bahl, A.; Brunk, B.; Crabtree, J.; Fraunholz, M.J.; Gajria, B.; Grant, G.R.; Ginsburg, H.; Gupta, D.; Kissinger, J.C.; Labo, P.; Li, L.; Mailman, M.D.; Milgram, A.J.; Pearson, D.S.; Roos, D.S.; Schug, J.; Stoeckert, C.J. Jr. and Whetzel, P. (2003) Nucleic Acids Res., 31, 212-215.
35. Gajria, B.; Bahl, A.; Brestelli, J.; Dommer, J.; Fischer, S.; Gao, X.; Heiges, M.; Iodice, J.; Kissinger, J.C.; Mackey, A.J.; Pinney, D.F.; Roos, D.S.; Stoeckert Jr, C.J.; Wang, H. and Brunk, B.P. (2007) Nucleic Acids Res., 36, D553-D556.
36. Aurrecoechea, C.; Brestelli, J.; Brunk, B.P.; Carlton, J.M.; Dommer, J.; Fischer, S.; Gajria, B.; Gao, X.; Gingle, A.; et al. (2009) Nucleic Acids Res., 37, D526-D530.
37. Aurrecoechea, C.; Heiges, M.; Wang, H.; Wang, Z.; Fischer, F.; Rhodes, P.; Miller, J.; Kraemer, E.; Stoeckert Jr., C.J.; Roos, D.S. and Kissinger J.C. (2007) Nucleic Acids Res., 35, 427-430.
38. Bowie, W.R.; King, A.S.; Werker, D.H.; Isaac-Renton, J.L.; Bell, A.; Eng, S.B. and Marion, S.A. (1997) Lancet, 350, 173-177.
39. Kim, K. and Weiss, L.M. (2004) Int. J. Parasitol., 34, 423-432.
40. Luft, B.J. and Remington, J.S. (1992) Clin. Infect. Dis., 15, 211-222.
41. Remington, J.S. and Desmonts, G. Toxoplasmosis (1989) Remington, J.S. and Klein, J.O., Ed., Philadelphia.
42. Xia, D.; Sanderson, S.J.; Jones, A.R.; Prieto, J.H.; Yates, J.R.; Bromley, E.; Tomley, F.M.; Lal, K.; Sinden, R.E.; Brunk, B.P.; Roos D.S. and Wastling, J.M. (2008) Genome Biology, 9(7), 1-18.
43. Dubey, J.P.; Speer, C.A. and Fayer, R. (1990) Cryptosporidiosis of Man and Animal, CRC Press, Inc., Boca Raton, FL.
44. Peterson,C. (1992) Clin. Infect. Dis., 15, 903-909.
45. Puiu, D.; Enomoto, S., Buck, G.A.; Abrahamsen, M.S. and Kissinger, J.C. (2004) Nucleic Acids Res., 32, D329-D331.
46. World Health Organization (2007) Malaria, Fact Sheet No. 94, Geneva, Switzerland.
47. Breman, J.G. (2001) Am. J. Trop. Med. Hygiene, 64, 1-11.
48. Phillips, R.S. (2001) Clin. Microbiol. Rev., 14, 208-226.
49. Brooks, D.R.; Wang, P.; Read, M.; Watkins, W.M.; Sims, P.F. and Hyde, J.E. (1994) Eur. J. Biochem., 224, 397-405.
50. Peterson, D.S.; Walliker, D. and Wellems, T.E. (1988) Proc. Natl. Acad. Sci. U S A, 85, 9114-9118.
51. de Beer, T.A.; Louw, A.I. and Joubert, F. (2006) Bioorg. Med. Chem., 14, 4433-4443.
52. Yuthavong, Y.; Yuvaniyama. J.; Chitnumsub, P.; Vanichtanankul, J.; Chusacultanachai, S.; Tarnchompoo, B.; Vilaivan, T. and Kamchonwongpaisan, S. (2005) Parasitology, 130, 249-259.
53. Bernstein, F.C.; Koetzle, T.F.; Williams, G.J.; Meyer, E.F.Jr.; Brice, M.D.; Rodgers, J.R.; Kennard, O.; Shimanouchi, T. and Tasumi, M. (1977) J Mol Biol., 112(3), 535-542.
54. Joubert, Y. and Joubert, F. (2008) Malaria J., 7, 90.
55. Stoeckert, Jr., C.J.; Fischer, F.; Kissinger, J.C.; Aurrecoechea, C.; Gajria, B. and Roos, D.S. (2006) Trends Parasitol., 22(12), 543-546.
56. Aurrecoechea, C.; Brestelli, J.; Brunk, B.P.; Dommer, J.; Fischer, S.; Gajria, B.; Gao, X.; Gingle, A.; Grant, G.; Harb, O.S.; Heiges, M.; Innamorato, F.; Iodice, J.; Kissinger, J.C.; Kraemer, E.; Li, W.; Miller, J.A.; Nayak, V.; Pennington, C.; Pinney, D.F.; Roos, D.S.; Ross, C.; Stoeckert, C.J. Jr.; Treatman, C. and Wang, H. (2009) Nucleic Acids Res., 37(Database issue), D539-543.
57. LaCount, D.J.; Vignali, M.; Chettier, R.; Phansalkar, A.; Bell, R.; Hesselberth, J.R.; Schoenfeld, L.W.; Ota, I.; Sahasrabudhe, S.; Kurschner, C.; Fields, S. and Hughes, R.E. (2005) Nature, 438, 103-107.
58. Date, S.V. and Stoeckert, C.J., Jr (2006) Genome Res., 16, 542-549.
59. Croft, S.L.; Sundar, S. and Fairlamb, A.H. (2006) Clin. Microbiol. Rev., 19, 111-126.
60. http://www.who.int/tdr/diseases/leish/diseaseinfo.htm
61. Silva, R.G.; Nunes, J.E.; Canduri, F.; Borges, J.C.; Gava, L.M.; Moreno, F.B.; Basso, L.A. and Santos, D.S. (2007) Curr. Drug Targets, 8(3), 413-422.
62. Hammarton, T.C.; Mottram, J.C. and Doerig, C. (2003) Prog. Cell Cycle Res., 5, 91-101.
63. Doerig, C. (2004) Biochimica et Biophysica Acta, 1697, 155-168.
64. Canduri, F.; Perez, P.C.; Caceres, R.A. and de Azevedo, W.F. Jr. (2007) Curr. Drug Targets, 8(3), 389-398.
65. Manhani, K.K.; Arcuri, H.A.; da Silveira, N.J.; Uchôa, H.B.; de Azevedo, W.F. Jr. and Canduri, F. (2005) J. Mol. Model., 12(1), 42-48.
66. Hertz-Fowler, C.; Peacock, C.S.; Wood, V.; Aslett, M.; Kerhornou, A.; Mooney, P.; Tivey, A.; Berriman, M.; Hall, N.; Rutherford, K.; Parkhill, J.; Ivens, A.C.; Rajandream, M.A. and Barrell, B. (2004) Nucleic Acids Res., 32, 339-343.
67. World Health Organization. (1995) Chagas' disease: important advances in elimination of transmission in four countries in Latin America. W. H. O. Press Office Feature no. 183. World Health Organization, Geneva, Switzerland.
68. Soares, M.B.; Pontes-De-Carvalho, L. and Ribeiro-Dos-Santos, R. (2001) An Acad Bras Cienc., 73(4), 547-559.
69. Garcia, S.; Ramos, C.O.; Senra, J.F.; Vilas-Boas, F.; Rodrigues, M.M.; Campos-de-Carvalho, A.C.; Ribeiro-Dos-Santos, R. and Soares, M.B. (2005) Antimicrob. Agents Chemother., 49(4), 1521-1528.
70. Aguero, F.; Zheng, W.; Weatherly, D. B.; Mendes, P. and Kissinger, J. C. (2006) Nucleic Acids Res., 1(34), D428-D431.
71. Renslo, A.R. and McKerrow, J.H. (2006) Nat. Chem. Biol., 2, 701-710.
72. De Azevedo Jr., W.F. (2008) Curr. Drug Targets, 9(12), 1030-1030.
73. De Azevedo Jr., W.F. and Dias, R. (2008) Curr. Drug Targets, 9(12), 1031-1039.
74. Canduri, F. and De Azevedo Jr., W.F. (2008) Curr. Drug Targets, 9(12), 1048-1053.
75. Dias, R.; Timmers, L.F.S.M.; Caceres, R.A. and De Azevedo Jr., W.F. (2008) Curr. Drug Targets, 9(12), 1062-1070.
76. Caceres, R.A.; Pauli, I.; Timmers, L.F.S.M. and De Azevedo Jr., W.F. (2008) Curr. Drug Targets, 9(12), 1077-1083.
77. De Amorim, H.L.N.; Caceres, R.A. and Netz, P.A. (2008) Curr. Drug Targets, 9(12), 1100-1105.
78. Pauli, I.; Timmers, L.F.S.M.; Caceres, R.A.; Soares, M.B.P. and De Azevedo Jr., W.F. (2008) Curr. Drug Targets, 9(12), 1054-1061.
79. De Azevedo Jr., W.F. and Dias, R. (2008) Curr. Drug Targets, 9(12), 1071-1076.
80. Dias, R. and De Azevedo Jr., W.F. (2008) Curr. Drug Targets, 9(12), 1040-1047.
81. Timmers, L.F.S.M.; Pauli, I.; Caceres, R.A. and De Azevedo Jr., W.F. (2008) Curr. Drug Targets, 9(12), 1092-1099.
82. Gobert, G.N. and Jones, M.K. (2008) Curr. Drug Targets, 9(11), 922-930.
83. Ehrenkaufer, G.M. and Singh, U. (2008) Curr. Drug Targets, 9(11), 931-937.
84. Kumari, S.; Kumar, A.; Samant, M.; Singh, N. and Dube, A. (2008) Curr. Drug Targets, 9(11), 938-947.
85. Fleige, T. and Soldati-Favre, D. (2008) Curr. Drug Targets, 9(11), 948-956.
86. Chauhan, S.C.; Padmanabhan, P.K. and Madhubala, R. (2008) Curr. Drug Targets, 9(11), 957-965.
87. Reguera, R.M.; Díaz-González, R.; Pérez-Pertejo, Y. and Fouce, R.B. (2008) Curr. Drug Targets, 9(11), 966-978.
88. Vanhamme, L. (2008) Curr. Drug Targets, 9(11), 979-996.
89. Bajsa, J.; Duke, S.O. and Tekwani, B.L. (2008) Curr. Drug Targets, 9(11), 997-1012.
90. Shi, W.; Ting, L.M.; Kicska, G.A.; Lewandowicz, A.; Tyler, P.C.; Evans, G.B.; Furneaux, R.H.; Kim, K.; Almo, S.C. and Schramm, V.L. (2004) J. Biol. Chem., 279(18), 18103-18106.