Structure of shikimate kinase from Mycobacterium tuberculosis reveals the binding of shikimic acid

Acta Crystallographica Section D: Biological Crystallography

Volumn 60, Issue 12 II, 2004, Pages 2310-2319

  Pereira, José Henrique ^a   De Oliveira, Jaim Simões ^b   Canduri, Fernanda ^a,c   Dias, Marcio Vinicius Bertacine ^a   Palma, Mário Sérgio ^c,d   Basso, Luiz Augusto ^b,e   Santos, Diógenes Santiago ^e   De Azevedo Jr , Walter Filgueira ^a,d  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

^b FEDERAL UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

^c INSTITUTO BUTANTAN   (Brazil)

^d Institute of Biosciences   (Brazil)

^e PONTIFICAL CATHOLIC UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS; MAMMALIA; MYCOBACTERIUM TUBERCULOSIS;

ADENOSINE DIPHOSPHATE; ARGININE; CHLORIDE; CHLORINE; GLUTAMIC ACID; ION; MAGNESIUM; PHOSPHOTRANSFERASE; SHIKIMATE KINASE; SHIKIMIC ACID;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CATALYSIS; CHEMICAL STRUCTURE; CHEMISTRY; ENZYME SPECIFICITY; ENZYMOLOGY; HUMAN; HYDROGEN BOND; KINETICS; MOLECULAR CLONING; MOLECULAR GENETICS; MYCOBACTERIUM TUBERCULOSIS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; TUBERCULOSIS; X RAY CRYSTALLOGRAPHY;

ADENOSINE DIPHOSPHATE; AMINO ACID SEQUENCE; ARGININE; BINDING SITES; CATALYSIS; CHLORIDES; CHLORINE; CLONING, MOLECULAR; CRYSTALLOGRAPHY, X-RAY; GLUTAMIC ACID; HUMANS; HYDROGEN BONDING; IONS; KINETICS; MAGNESIUM; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM TUBERCULOSIS; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; SHIKIMIC ACID; SUBSTRATE SPECIFICITY; TUBERCULOSIS;

EID: 21644455718     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S090744490402517X     Document Type: Article

References (31)

1. Arcuri, H. A., Canduri, F., Pereira, J. H., Silveira, N. J. F., Camara, J. C. Jr, Oliveira, J. S., Basso, L. A., de Palma, M. S., Santos, D. S. & de Azevedo, W. F. (2004). Biochem. Biophys. Res. Commun. 320, 979-991.
2. Azevedo, W. F. de, Canduri, F., de Oliveira, J. S., Basso, L. A., Palma, M. S., Pereira, J. H. & Santos, D. S. (2002). Biochem. Biophys. Res. Commun. 295, 142-148.
3. Bentley, R. (1990). Crit. Rev. Biochem. Mol. Biol. 25, 307-384.
4. Brünger, A. T. (1992). X-PLOR Version 3.1: A System for Crystallography and NMR. New Haven: Yale University Press.
5. Cerasoli, E., Kelly, S. M., Coggins, J. R., Lapthorn, A. J., Clarke, D. T. & Price, N. C. (2003). Biochim. Biophys. Acta, 1648, 43-54.
6. Coggins, J. R. (1989). Herbicides and Plant Metabolism, edited by A. Dodge, pp. 97-112. Cambridge University Press.
7. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
8. Davies, G. M., Barrett-Bee, K. J., Jude, D. A., Lehan, M., Nichols, W. W., Pinder, P. E., Thain, J. L., Watkins, W. J. & Wilson, R. G. (1994). Antimicrob. Agents Chemother. 38, 403-406.
9. Gu, Y., Reshetnikova, L., Li, Y., Wu, Y., Yan, H., Singh, S. & Ji, X. (2002). J. Mol. Biol. 319, 779-789.
10. Gu, Y., Reshetnikova, L., Li, Y., Yan, H., Singh, S. V. & Ji, X. (2001). Acta Cryst. D57, 1870-1871.
11. Hasemann, C. A., Istvan, E. S., Uyeda, K. & Deisenhofer, J. (1996). Structure, 4, 1017-1029.
12. Idziak, C., Price, N. C., Kelly, S. M., Krell, T., Boam, D. J., Lapthorn, A. J. & Coggins, J. R. (1997). Biochem. Soc. Trans. 25, S627.
13. Jencks, W. P. (1975a). In Catalysis in Chemistry and Enzymology. New York: Dover.
14. Jencks, W. P. (1975b). Adv. Enzymol. 43, 219-410.
15. Koradi, R., Billeter, M. & Wüthrich, K. (1996). J. Mol. Graph. 14, 51-55.
16. Kraft, L., Sprenger, G. A. & Lindqvist, Y. (2002). J. Mol. Biol. 318, 1057-1069.
17. Krell, T., Coggins, J. R. & Lapthorn, A. J. (1998). J. Mol. Biol. 278, 983-997.
18. Krell, T., Maclean, J., Boam, D. J., Cooper, A., Resmini, M., Brocklehurst, K., Kelly, S. M., Price, N. C., Lapthorn, A. J. & Coggins, J. R. (2001). Protein Sci. 10, 1137-1149.
19. Laskowski, R. A., MacArthur, M. W., Smith, D. K., Jones, D. T., Hutchinson, E. G., Morris, A. L., Naylor, D., Moss, D. S. & Thornton, J. M. (1994). PROCHECK v.3.0. Program to Check the Stereochemistry Quality of Protein Structures. Operating Instructions. http://www.ccp14.ac.uk/ccp/ccp14/ftp-mirror/ llnlrupp/Procheck_NT/manual.txt.
20. Leipe, D. D., Koonin, E. V. & Aravind, L. (2003). J. Mol. Biol. 333, 781-815.
21. Leslie, A. G. W. (1992). Jnt CCP4/ESF-EACBM Newsl. Protein Crystallogr. 26.
22. McRee, D. E. (1999). J. Struct. Biol. 125, 156-165.
23. Navaza, J. (1994). Acta Cryst. A50, 157-163.
24. Oliveira, J. S., Pinto, C. A., Basso, L. A. & Santos, D. S. (2001). Protein Expr. Purif. 22, 430-435.
25. Parish, T. & Stoker, N. G. (2002). Microbiology, 148, 3069-3077.
26. Pereira, J. H., Canduri, F., de Oliveira, J. S., da Silveira, N. J. F., Basso, L. A., Palma, M. S., de Azevedo, W. F. & Santos, D. S. (2003). Biochem. Biophys. Res. Commun. 312, 608-614.
27. Polikarpov, I., Perles, L. A., de Oliveira, R. T., Oliva, G., Castellano, E. E., Garratt, R. C. & Craievich, A. (1998). J. Synchrotron Rad. 5, 72-76.
28. Romanowski, M. J. & Burley, S. K. (2002). Proteins Struct. Funct. Genet. 47, 558-562.
29. Smith, C. A. & Rayment, I. (1996). Biophys. J. 70, 1590-1602.
30. Vonrhein, C., Schlauderer, G. J. & Schulz, G. E. (1995). Structure, 3, 483-490.
31. Walker, J. E., Saraste, M., Runswick, M. J. & Gay, N. J. (1982). EMBO J. 1, 945-951.