A protein interaction network of the malaria parasite Plasmodium falciparum

Nature

Volumn 438, Issue 7064, 2005, Pages 103-107

  LaCount, Douglas J ^a   Vignali, Marissa ^a   Chettier, Rakesh ^b   Phansalkar, Amit ^b   Bell, Russell ^b   Hesselberth, Jay R ^a   Schoenfeld, Lori W ^a   Ota, Irene ^b   Sahasrabudhe, Sudhir ^b   Kurschner, Cornelia ^b   Fields, Stanley ^a   Hughes, Robert E ^b,c  

^a UNIVERSITY OF WASHINGTON   (United States)

^b Prolexys Pharmaceuticals Inc   (United States)

^c BUCK INSTITUTE FOR RESEARCH ON AGING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHARACTERIZATION; DISEASES; GENES; INFORMATION ANALYSIS; YEAST;

MALARIA PARASITE; PLASMODIUM FALCIPARUM; PROTEIN-PROTEIN INTERACTIONS;

PROTEINS;

PROTOZOAL PROTEIN;

MALARIA;

ARTICLE; CELL INVASION; CHROMATIN; GENE EXPRESSION; GENETIC TRANSCRIPTION; HIGH THROUGHPUT SCREENING; HOST CELL; MALARIA FALCIPARUM; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; RNA STABILITY; SACCHAROMYCES CEREVISIAE; TWO HYBRID SYSTEM; UBIQUITINATION; YEAST;

PLASMODIUM FALCIPARUM; SACCHAROMYCES CEREVISIAE;

EID: 27644484749     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature04104     Document Type: Article

References (30)

1. Breman, J. G. The ears of the hippopotamus: manifestations, determinants, and estimates of the malaria burden. Am. J. Trop. Med. Hyg. 64, 1-11 (2001).
2. Ashburner, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genet. 25, 25-29 (2000).
3. Gardner, M. J. et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419, 498-511 (2002).
4. Sibley, C. H. et al. Yeast as a model system to study drugs effective against apicomplexan proteins. Methods 13, 190-207 (1997).
5. Formstecher, E. et al. Protein interaction mapping: a Drosophila case study. Genome Res. 15, 376-384 (2005).
6. Giot, L. et al. A protein interaction map of Drosophila melanogaster. Science 302, 1727-1736 (2003).
7. Barabasi, A. L. & Oltvai, Z. N. Network biology: understanding the cell's functional organization. Nature Rev. Genet. 5, 101-113 (2004).
8. Rives, A. W. & Galitski, T. Modular organization of cellular networks. Proc. Natl Acad. Sci. USA 100, 1128-1133 (2003).
9. Bader, G. D. & Hogue, C. W. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4, 2 (2003).
10. Fan, Q., An, L. & Cui, L. Plasmodium falciparum histone acetyltransferase, a yeast GCN5 homologue involved in chromatin remodeling. Eukaryot. Cell 3, 264-276 (2004).
11. Rea, S. et al. Regulation of chromatin structure by site-specific histone H3 methyltransferases. Nature 406, 593-599 (2000).
12. Ragvin, A. et al. Nucleosome binding by the bromodomain and PHD finger of the transcriptional cofactor p300. J. Mol. Biol. 337, 773-788 (2004).
13. Li, L., Stoeckert, C. J. Jr & Roos, D. S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003).
14. Iida, T. & Araki, H. Noncompetitive counteractions of DNA polymerase epsilon and ISW2/yCHRAC for epigenetic inheritance of telomere position effect in Saccharomyces cerevisiae. Mol. Cell. Biol. 24, 217-227 (2004).
15. Huynh, K. D. & Bardwell, V. J. The BCL-6 POZ domain and other POZ domains interact with the co-repressors N-CoR and SMRT. Oncogene 17, 2473-2484 (1998).
16. Bozdech, Z. et al. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol. 1, E5 (2003).
17. Le Roch, K. G. et al. Discovery of gene function by expression profiling of the malaria parasite life cycle. Science 301, 1503-1508 (2003).
18. Coulson, R. M., Hall, N. & Ouzounis, C. A. Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum. Genome Res. 14, 1548-1554 (2004).
19. Aravind, L., Iyer, L. M., Wellems, T. E. & Miller, L. H. Plasmodium biology: genomic gleanings. Cell 115, 771-785 (2003).
20. Daniel, J. A. et al. Deubiquitination of histone H2B by a yeast acetyltransferase complex regulates transcription. J. Biol. Chem. 279, 1867-1871 (2004).
21. Collart, M. A. Global control of gene expression in yeast by the Ccr4-Not complex. Gene 313, 1-16 (2003).
22. Ge, H., Walhout, A. J. & Vidal, M. Integrating 'omic' information: a bridge between genomics and systems biology. Trends Genet. 19, 551-560 (2003).
23. Li, S. et al. A map of the interactome network of the metazoan C. elegans. Science 303, 540-543 (2004).
24. Le Roch, K. G. et al. Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle. Genome Res. 14, 2308-2318 (2004).
25. Li, X. et al. A co-ligand complex anchors Plasmodium falciparum merozoites to the erythrocyte invasion receptor band 3. J. Biol. Chem. 279, 5765-5771 (2004).
26. Florens, L. et al. A proteomic view of the Plasmodium falciparum life cycle. Nature 419, 520-526 (2002).
27. Kissinger, J. C. et al. The Plasmodium genome database. Nature 419, 490-492 (2002).
28. Cooke, B. M., Lingelbach, K., Bannister, L. H. & Tilley, L. Protein trafficking in Plasmodium falciparum-infected red blood cells. Trends Parasitol. 20, 581-589 (2004).
29. Hiller, N. L. et al. A host-targeting signal in virulence proteins reveals a secretome in malarial infection. Science 306, 1934-1937 (2004).
30. Marti, M., Good, R. T., Rug, M., Knuepfer, E. & Cowman, A. F. Targeting malaria virulence and remodeling proteins to the host erythrocyte. Science 306, 1930-1933 (2004).