메뉴 건너뛰기




Volumn 42, Issue , 2008, Pages 587-617

The take and give between retrotransposable elements and their hosts

Author keywords

DNA replication and repair; Host factors; RNA surveillance; TP and EP retrotransposons

Indexed keywords

RNA; RNA DIRECTED DNA POLYMERASE;

EID: 57049092878     PISSN: 00664197     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.genet.42.110807.091549     Document Type: Review
Times cited : (142)

References (214)
  • 1
    • 34248160438 scopus 로고    scopus 로고
    • Developmentally regulated piRNA clusters implicate MILI in transposon control
    • Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ. 2007. Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316:744-47
    • (2007) Science , vol.316 , pp. 744-747
    • Aravin, A.A.1    Sachidanandam, R.2    Girard, A.3    Fejes-Toth, K.4    Hannon, G.J.5
  • 2
    • 0034687755 scopus 로고    scopus 로고
    • Transposable elements in sexual and ancient asexual taxa
    • Arkhipova I, Meselson M. 2000. Transposable elements in sexual and ancient asexual taxa. Proc. Natl. Acad. Sci. USA 97:14473-77
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 14473-14477
    • Arkhipova, I.1    Meselson, M.2
  • 5
    • 34248358963 scopus 로고    scopus 로고
    • Progress in understanding the biology of the human mutagen LINE-1
    • Babushok DV, Kazazian HH Jr. 2007. Progress in understanding the biology of the human mutagen LINE-1. Hum. Mutat. 28:527-39
    • (2007) Hum. Mutat , vol.28 , pp. 527-539
    • Babushok, D.V.1    Kazazian Jr., H.H.2
  • 6
    • 0032486142 scopus 로고    scopus 로고
    • RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters
    • Bartlett MS, Gaal T, Ross W, Gourse RL. 1998. RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters. J. Mol. Biol. 279:331-45
    • (1998) J. Mol. Biol , vol.279 , pp. 331-345
    • Bartlett, M.S.1    Gaal, T.2    Ross, W.3    Gourse, R.L.4
  • 7
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity
    • Batzer MA, Deininger PL. 2002. Alu repeats and human genomic diversity. Nat. Rev. Genet. 3:370-79
    • (2002) Nat. Rev. Genet , vol.3 , pp. 370-379
    • Batzer, M.A.1    Deininger, P.L.2
  • 8
    • 33749994004 scopus 로고    scopus 로고
    • Bipolar localization of the group II intron Ll.LtrB is maintained in Escherichia coli deficient in nucleoid condensation, chromosome partitioning and DNA replication
    • Beauregard A, Chalamcharla VR, Piazza CL, Belfort M, Coros CJ. 2006. Bipolar localization of the group II intron Ll.LtrB is maintained in Escherichia coli deficient in nucleoid condensation, chromosome partitioning and DNA replication. Mol. Microbiol. 62:709-22
    • (2006) Mol. Microbiol , vol.62 , pp. 709-722
    • Beauregard, A.1    Chalamcharla, V.R.2    Piazza, C.L.3    Belfort, M.4    Coros, C.J.5
  • 9
    • 0027500890 scopus 로고
    • Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element
    • Becker KG, Swergold GD, Ozato K, Thayer RE. 1993. Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element. Hum. Mol. Genet. 2:1697-702
    • (1993) Hum. Mol. Genet , vol.2 , pp. 1697-1702
    • Becker, K.G.1    Swergold, G.D.2    Ozato, K.3    Thayer, R.E.4
  • 10
    • 33645466204 scopus 로고    scopus 로고
    • LINE-1 RNA splicing and influences on mammalian gene expression
    • Belancio VP, Hedges DJ, Deininger P. 2006. LINE-1 RNA splicing and influences on mammalian gene expression. Nucleic Acids Res. 34:1512-21
    • (2006) Nucleic Acids Res , vol.34 , pp. 1512-1521
    • Belancio, V.P.1    Hedges, D.J.2    Deininger, P.3
  • 11
    • 40449139336 scopus 로고    scopus 로고
    • Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health
    • Belancio VP, Hedges DJ, Deininger P. 2008. Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. Genome Res. 18:343-58
    • (2008) Genome Res , vol.18 , pp. 343-358
    • Belancio, V.P.1    Hedges, D.J.2    Deininger, P.3
  • 12
    • 39749182717 scopus 로고    scopus 로고
    • The impact of multiple splice sites in human L1 elements
    • Belancio VP, Roy-Engel AM, Deininger P. 2008. The impact of multiple splice sites in human L1 elements. Gene 411:38-45
    • (2008) Gene , vol.411 , pp. 38-45
    • Belancio, V.P.1    Roy-Engel, A.M.2    Deininger, P.3
  • 14
    • 13244282991 scopus 로고    scopus 로고
    • Conjugative transfer of the Lactococcus lactis chromosomal sex factor promotes dissemination of the Ll.LtrB group II intron
    • Belhocine K, Yam KK, Cousineau B. 2005. Conjugative transfer of the Lactococcus lactis chromosomal sex factor promotes dissemination of the Ll.LtrB group II intron. J. Bacteriol. 187:930-39
    • (2005) J. Bacteriol , vol.187 , pp. 930-939
    • Belhocine, K.1    Yam, K.K.2    Cousineau, B.3
  • 15
    • 29844452924 scopus 로고    scopus 로고
    • Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components
    • Beliakova-Bethell N, Beckham C, Giddings TH Jr, Winey M, Parker R, Sandmeyer S. 2006. Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components. RNA 12:94-101
    • (2006) RNA , vol.12 , pp. 94-101
    • Beliakova-Bethell, N.1    Beckham, C.2    Giddings Jr, T.H.3    Winey, M.4    Parker, R.5    Sandmeyer, S.6
  • 16
    • 40349116304 scopus 로고    scopus 로고
    • A cryptic unstable transcript mediates transcriptional transsilencing of the Ty1 retrotransposon in S. cerevisiae
    • Berretta J, Pinskaya M, Morillon A. 2008. A cryptic unstable transcript mediates transcriptional transsilencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev. 22:615-26
    • (2008) Genes Dev , vol.22 , pp. 615-626
    • Berretta, J.1    Pinskaya, M.2    Morillon, A.3
  • 17
    • 0037385868 scopus 로고    scopus 로고
    • Cytosine methylation mediates sexual conflict
    • Bestor TH. 2003. Cytosine methylation mediates sexual conflict. Trends Genet. 19:185-90
    • (2003) Trends Genet , vol.19 , pp. 185-190
    • Bestor, T.H.1
  • 20
    • 31644442239 scopus 로고    scopus 로고
    • APOBEC3A and APOBEC3B are potent inhibitors of LTR-retrotransposon function in human cells
    • Bogerd HP, Wiegand HL, Doehle BP, Lueders KK, Cullen BR. 2006. APOBEC3A and APOBEC3B are potent inhibitors of LTR-retrotransposon function in human cells. Nucleic Acids Res. 34:89-95
    • (2006) Nucleic Acids Res , vol.34 , pp. 89-95
    • Bogerd, H.P.1    Wiegand, H.L.2    Doehle, B.P.3    Lueders, K.K.4    Cullen, B.R.5
  • 22
    • 37249020936 scopus 로고    scopus 로고
    • Cis- and trans-splicing of group II introns in plant mitochondria
    • Bonen L. 2008. Cis- and trans-splicing of group II introns in plant mitochondria. Mitochondrion 8:26-34
    • (2008) Mitochondrion , vol.8 , pp. 26-34
    • Bonen, L.1
  • 23
    • 0035368207 scopus 로고    scopus 로고
    • The ins and outs of group II introns
    • Bonen L, Vogel J. 2001. The ins and outs of group II introns. Trends Genet. 17:322-31
    • (2001) Trends Genet , vol.17 , pp. 322-331
    • Bonen, L.1    Vogel, J.2
  • 24
    • 4544223707 scopus 로고    scopus 로고
    • Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
    • Bourc'his D, Bestor TH. 2004. Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 431:96-99
    • (2004) Nature , vol.431 , pp. 96-99
    • Bourc'his, D.1    Bestor, T.H.2
  • 25
  • 26
    • 0028274570 scopus 로고
    • Developmental and cell type specificity of LINE-1 expression in mouse testis: Implications for transposition
    • Branciforte D, Martin SL. 1994. Developmental and cell type specificity of LINE-1 expression in mouse testis: implications for transposition. Mol. Cell Biol. 14:2584-92
    • (1994) Mol. Cell Biol , vol.14 , pp. 2584-2592
    • Branciforte, D.1    Martin, S.L.2
  • 27
    • 39349097864 scopus 로고    scopus 로고
    • Identification of host proteins required for HIV infection through a functional genomic screen
    • Brass AL, Dykxhoorn DM, Benita Y, Yan N, Engelman A, et al. 2008. Identification of host proteins required for HIV infection through a functional genomic screen. Science 319:921-26
    • (2008) Science , vol.319 , pp. 921-926
    • Brass, A.L.1    Dykxhoorn, D.M.2    Benita, Y.3    Yan, N.4    Engelman, A.5
  • 29
    • 0034928760 scopus 로고    scopus 로고
    • The Sgs1 helicase of Saccharomyces cerevisiae inhibits retrotransposition of Ty1 multimeric arrays
    • Bryk M, Banerjee M, Conte D Jr, Curcio MJ. 2001. The Sgs1 helicase of Saccharomyces cerevisiae inhibits retrotransposition of Ty1 multimeric arrays. Mol. Cell Biol. 21:5374-88
    • (2001) Mol. Cell Biol , vol.21 , pp. 5374-5388
    • Bryk, M.1    Banerjee, M.2    Conte Jr, D.3    Curcio, M.J.4
  • 30
    • 31544468112 scopus 로고    scopus 로고
    • RNAi: A defensive RNA-silencing against viruses and transposable elements
    • Buchon N, Vaury C. 2006. RNAi: a defensive RNA-silencing against viruses and transposable elements. Heredity 96:195-202
    • (2006) Heredity , vol.96 , pp. 195-202
    • Buchon, N.1    Vaury, C.2
  • 31
    • 0036209708 scopus 로고    scopus 로고
    • Integration site selection by lentiviruses: Biology and possible control
    • Bushman FD. 2002. Integration site selection by lentiviruses: biology and possible control. Curr. Top. Microbiol. Immunol. 261:165-77
    • (2002) Curr. Top. Microbiol. Immunol , vol.261 , pp. 165-177
    • Bushman, F.D.1
  • 32
    • 38549152196 scopus 로고    scopus 로고
    • Host genome surveillance for retrotransposons by transposon-derived proteins
    • Cam HP, Noma K, Ebina H, Levin HL, Grewal SI. 2008. Host genome surveillance for retrotransposons by transposon-derived proteins. Nature 451:431-36
    • (2008) Nature , vol.451 , pp. 431-436
    • Cam, H.P.1    Noma, K.2    Ebina, H.3    Levin, H.L.4    Grewal, S.I.5
  • 34
    • 33947720638 scopus 로고    scopus 로고
    • MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline
    • Carmell MA, Girard A, van de Kant HJ, Bourc'his D, Bestor TH, et al. 2007. MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline. Dev. Cell 12:503-14
    • (2007) Dev. Cell , vol.12 , pp. 503-514
    • Carmell, M.A.1    Girard, A.2    van de Kant, H.J.3    Bourc'his, D.4    Bestor, T.H.5
  • 35
    • 1442360415 scopus 로고    scopus 로고
    • RNase III enzymes and the initiation of gene silencing
    • Carmell MA, Hannon GJ. 2004. RNase III enzymes and the initiation of gene silencing. Nat. Struct. Mol. Biol. 11:214-18
    • (2004) Nat. Struct. Mol. Biol , vol.11 , pp. 214-218
    • Carmell, M.A.1    Hannon, G.J.2
  • 36
    • 35548995356 scopus 로고    scopus 로고
    • The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E
    • Carpousis AJ. 2007. The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E. Annu. Rev. Microbiol. 61:71-87
    • (2007) Annu. Rev. Microbiol , vol.61 , pp. 71-87
    • Carpousis, A.J.1
  • 37
    • 0025810123 scopus 로고
    • Intron phylogeny: A new hypothesis
    • Cavalier-Smith T. 1991. Intron phylogeny: a new hypothesis. Trends Genet. 7:145-48
    • (1991) Trends Genet , vol.7 , pp. 145-148
    • Cavalier-Smith, T.1
  • 38
    • 0025755924 scopus 로고
    • Isolation and characterization of the gene encoding yeast debranching enzyme
    • Chapman KB, Boeke JD. 1991. Isolation and characterization of the gene encoding yeast debranching enzyme. Cell 65:483-92
    • (1991) Cell , vol.65 , pp. 483-492
    • Chapman, K.B.1    Boeke, J.D.2
  • 39
    • 33644769083 scopus 로고    scopus 로고
    • APOBEC3A is a potent inhibitor of adenoassociated virus and retrotransposons
    • Chen H, Lilley CE, Yu Q, Lee DV, Chou J, et al. 2006. APOBEC3A is a potent inhibitor of adenoassociated virus and retrotransposons. Curr. Biol. 16:480-85
    • (2006) Curr. Biol , vol.16 , pp. 480-485
    • Chen, H.1    Lilley, C.E.2    Yu, Q.3    Lee, D.V.4    Chou, J.5
  • 40
    • 0348230966 scopus 로고    scopus 로고
    • RNA branching and debranching in the yeast retrovirus-like element Ty1
    • Cheng Z, Menees TM. 2004. RNA branching and debranching in the yeast retrovirus-like element Ty1. Science 303:240-43
    • (2004) Science , vol.303 , pp. 240-243
    • Cheng, Z.1    Menees, T.M.2
  • 41
    • 42649120310 scopus 로고    scopus 로고
    • The APOBEC3 cytidine deaminases: An innate defensive network opposing exogenous retroviruses and endogenous retroelements
    • Chiu YL, Greene WC. 2007. The APOBEC3 cytidine deaminases: an innate defensive network opposing exogenous retroviruses and endogenous retroelements. Annu. Rev. Immunol. 26:317-53
    • (2007) Annu. Rev. Immunol , vol.26 , pp. 317-353
    • Chiu, Y.L.1    Greene, W.C.2
  • 44
    • 24944538729 scopus 로고    scopus 로고
    • Localization, mobility and fidelity of retrotransposed group II introns in rRNA genes
    • Conlan LH, Stanger MJ, Ichiyanagi K, Belfort M. 2005. Localization, mobility and fidelity of retrotransposed group II introns in rRNA genes. Nucleic Acids Res. 33:5262-70
    • (2005) Nucleic Acids Res , vol.33 , pp. 5262-5270
    • Conlan, L.H.1    Stanger, M.J.2    Ichiyanagi, K.3    Belfort, M.4
  • 45
    • 13944284088 scopus 로고    scopus 로고
    • An evaluation of detection methods for large lariat RNAs
    • Coombes CE, Boeke JD. 2005. An evaluation of detection methods for large lariat RNAs. RNA 11:323-31
    • (2005) RNA , vol.11 , pp. 323-331
    • Coombes, C.E.1    Boeke, J.D.2
  • 46
    • 0027377879 scopus 로고
    • Group II and group III introns of twintrons: Potential relationships to nuclear premRNA introns
    • Copertino DW, Hallick RB. 1993. Group II and group III introns of twintrons: potential relationships to nuclear premRNA introns. Trends Biochem. Sci. 18:467-71
    • (1993) Trends Biochem. Sci , vol.18 , pp. 467-471
    • Copertino, D.W.1    Hallick, R.B.2
  • 47
    • 17144406037 scopus 로고    scopus 로고
    • Retrotransposition strategies of the Lactococcus lactis Ll.LtrB group II intron are dictated by host identity and cellular environment
    • Coros CJ, Landthaler M, Piazza CL, Beauregard A, Esposito D, et al. 2005. Retrotransposition strategies of the Lactococcus lactis Ll.LtrB group II intron are dictated by host identity and cellular environment. Mol. Microbiol. 56:509-24
    • (2005) Mol. Microbiol , vol.56 , pp. 509-524
    • Coros, C.J.1    Landthaler, M.2    Piazza, C.L.3    Beauregard, A.4    Esposito, D.5
  • 48
    • 58549105296 scopus 로고    scopus 로고
    • Deleted in proof
    • Deleted in proof
  • 49
    • 0032559061 scopus 로고    scopus 로고
    • Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
    • Cost GJ, Boeke JD. 1998. Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry 37:18081-93
    • (1998) Biochemistry , vol.37 , pp. 18081-18093
    • Cost, G.J.1    Boeke, J.D.2
  • 50
    • 0036847319 scopus 로고    scopus 로고
    • Human L1 element target-primed reverse transcription in vitro
    • Cost GJ, Feng Q, Jacquier A, Boeke JD. 2002. Human L1 element target-primed reverse transcription in vitro. EMBO J. 21:5899-910
    • (2002) EMBO J , vol.21 , pp. 5899-5910
    • Cost, G.J.1    Feng, Q.2    Jacquier, A.3    Boeke, J.D.4
  • 51
    • 0034720157 scopus 로고    scopus 로고
    • Cousineau B, Lawrence S, Smith D, Belfort M. 2000. Retrotransposition of a bacterial group II intron. Nature 404:1018-21. Erratum. 2001 Nature 414:84
    • Cousineau B, Lawrence S, Smith D, Belfort M. 2000. Retrotransposition of a bacterial group II intron. Nature 404:1018-21. Erratum. 2001 Nature 414:84
  • 52
    • 0032555726 scopus 로고    scopus 로고
    • Retrohoming of a bacterial group II intron: Mobility via complete reverse splicing, independent of homologous DNA recombination
    • Cousineau B, Smith D, Lawrence-Cavanagh S, Mueller JE, Yang J, et al. 1998. Retrohoming of a bacterial group II intron: mobility via complete reverse splicing, independent of homologous DNA recombination. Cell 94:451-62
    • (1998) Cell , vol.94 , pp. 451-462
    • Cousineau, B.1    Smith, D.2    Lawrence-Cavanagh, S.3    Mueller, J.E.4    Yang, J.5
  • 53
    • 0003873979 scopus 로고    scopus 로고
    • Craig NL, Craigie R, Gellert M, Lambowitz A, eds, Washington, DC: ASM Press
    • Craig NL, Craigie R, Gellert M, Lambowitz A, eds. 2002. Mobile DNA II. Washington, DC: ASM Press
    • (2002) Mobile DNA II
  • 54
    • 34547146462 scopus 로고    scopus 로고
    • The beginning of the end: Links between ancient retroelements and modern telomerases
    • Curcio MJ, Belfort M. 2007. The beginning of the end: links between ancient retroelements and modern telomerases. Proc. Nat. Acad. Sci. USA 104:9107-8
    • (2007) Proc. Nat. Acad. Sci. USA , vol.104 , pp. 9107-9108
    • Curcio, M.J.1    Belfort, M.2
  • 55
    • 0242636324 scopus 로고    scopus 로고
    • The outs and ins of transposition: From mu to kangaroo
    • Curcio MJ, Derbyshire KM. 2003. The outs and ins of transposition: from mu to kangaroo. Nat. Rev. Mol. Cell Biol. 4:865-77
    • (2003) Nat. Rev. Mol. Cell Biol , vol.4 , pp. 865-877
    • Curcio, M.J.1    Derbyshire, K.M.2
  • 56
    • 37549031696 scopus 로고    scopus 로고
    • S-phase checkpoint pathways stimulate the mobility of the retrovirus-like transposon Ty1
    • Curcio MJ, Kenny AE, Moore S, Garfinkel DJ, Weintraub M, et al. 2007. S-phase checkpoint pathways stimulate the mobility of the retrovirus-like transposon Ty1. Mol. Cell Biol. 27:8874-85
    • (2007) Mol. Cell Biol , vol.27 , pp. 8874-8885
    • Curcio, M.J.1    Kenny, A.E.2    Moore, S.3    Garfinkel, D.J.4    Weintraub, M.5
  • 57
    • 34447328702 scopus 로고    scopus 로고
    • Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin
    • Dai J, Xie W, Brady TL, Gao J, Voytas DF. 2007. Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin. Mol. Cell 27:289-99
    • (2007) Mol. Cell , vol.27 , pp. 289-299
    • Dai, J.1    Xie, W.2    Brady, T.L.3    Gao, J.4    Voytas, D.F.5
  • 59
    • 0037278926 scopus 로고    scopus 로고
    • ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs
    • Dai L, Zimmerly S. 2003. ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs. RNA 9:14-19
    • (2003) RNA , vol.9 , pp. 14-19
    • Dai, L.1    Zimmerly, S.2
  • 61
    • 34948833173 scopus 로고    scopus 로고
    • Do DEAD-box proteins promote group II intron splicing without unwinding RNA?
    • Del Campo M, Tijerina P, Bhaskaran H, Mohr S, Yang Q, et al. 2007. Do DEAD-box proteins promote group II intron splicing without unwinding RNA? Mol. Cell 28:159-66
    • (2007) Mol. Cell , vol.28 , pp. 159-166
    • Del Campo, M.1    Tijerina, P.2    Bhaskaran, H.3    Mohr, S.4    Yang, Q.5
  • 62
    • 0041353551 scopus 로고    scopus 로고
    • LINE-mediated retrotransposition of marked Alu sequences
    • Dewannieux M, Esnault C, Heidmann T. 2003. LINE-mediated retrotransposition of marked Alu sequences. Nat. Genet. 35:41-48
    • (2003) Nat. Genet , vol.35 , pp. 41-48
    • Dewannieux, M.1    Esnault, C.2    Heidmann, T.3
  • 63
    • 85158011569 scopus 로고    scopus 로고
    • R2 and related site-specific nonlong terminal repeat retrotransposons
    • Eickbush TH. 2002. R2 and related site-specific nonlong terminal repeat retrotransposons. See Ref. 52a, pp. 813-35
    • (2002) See Ref , vol.52 a , pp. 813-835
    • Eickbush, T.H.1
  • 64
    • 43049094016 scopus 로고    scopus 로고
    • The diversity of retrotransposons and the properties of their reverse transcriptases
    • Eickbush TH, Jamburuthugoda VK. 2008. The diversity of retrotransposons and the properties of their reverse transcriptases. Virus Res. 134:221-34
    • (2008) Virus Res , vol.134 , pp. 221-234
    • Eickbush, T.H.1    Jamburuthugoda, V.K.2
  • 65
    • 0033756209 scopus 로고    scopus 로고
    • Multiple homing pathways used by yeast mitochondrial group II introns
    • Eskes R, Liu L, Ma H, Chao MY, Dickson L, et al. 2000. Multiple homing pathways used by yeast mitochondrial group II introns. Mol. Cell Biol. 20:8432-46
    • (2000) Mol. Cell Biol , vol.20 , pp. 8432-8446
    • Eskes, R.1    Liu, L.2    Ma, H.3    Chao, M.Y.4    Dickson, L.5
  • 66
    • 23844456247 scopus 로고    scopus 로고
    • Penelope-like elements - a new class of retroelements: Distribution, function and possible evolutionary significance
    • Evgen'ev MB, Arkhipova IR. 2005. Penelope-like elements - a new class of retroelements: distribution, function and possible evolutionary significance. Cytogenet. Genome Res. 110:510-21
    • (2005) Cytogenet. Genome Res , vol.110 , pp. 510-521
    • Evgen'ev, M.B.1    Arkhipova, I.R.2
  • 67
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng Q, Moran JV, Kazazian HH Jr, Boeke JD. 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87:905-16
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian Jr, H.H.3    Boeke, J.D.4
  • 68
    • 35148899681 scopus 로고    scopus 로고
    • Stress-induced mutagenesis in bacteria
    • Foster PL. 2007. Stress-induced mutagenesis in bacteria. Crit. Rev. Biochem. Mol. Biol. 42:373-97
    • (2007) Crit. Rev. Biochem. Mol. Biol , vol.42 , pp. 373-397
    • Foster, P.L.1
  • 69
    • 0141706831 scopus 로고    scopus 로고
    • CEN plasmid segregation is destabilized by tethered determinants of Ty 5 integration specificity: A role for double-strand breaks in CEN antagonism
    • Fuerst PG, Voytas DF. 2003. CEN plasmid segregation is destabilized by tethered determinants of Ty 5 integration specificity: a role for double-strand breaks in CEN antagonism. Chromosoma 112:58-65
    • (2003) Chromosoma , vol.112 , pp. 58-65
    • Fuerst, P.G.1    Voytas, D.F.2
  • 70
    • 33748506522 scopus 로고    scopus 로고
    • Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome
    • Gao J, Lee K, Zhao M, Qiu J, Zhan X, et al. 2006. Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome. Mol. Microbiol. 61:394-406
    • (2006) Mol. Microbiol , vol.61 , pp. 394-406
    • Gao, J.1    Lee, K.2    Zhao, M.3    Qiu, J.4    Zhan, X.5
  • 71
    • 33845433818 scopus 로고    scopus 로고
    • Retrotransposon suicide: Formation of Ty1 circles and autointegration via a central DNA flap
    • Garfinkel DJ, Stefanisko KM, Nyswaner KM, Moore SP, Oh J, Hughes SH. 2006. Retrotransposon suicide: formation of Ty1 circles and autointegration via a central DNA flap. J. Virol. 80:11920-34
    • (2006) J. Virol , vol.80 , pp. 11920-11934
    • Garfinkel, D.J.1    Stefanisko, K.M.2    Nyswaner, K.M.3    Moore, S.P.4    Oh, J.5    Hughes, S.H.6
  • 73
    • 33645068168 scopus 로고    scopus 로고
    • The human LINE-1 retrotransposon creates DNA double-strand breaks
    • Gasior SL, Wakeman TP, Xu B, Deininger PL. 2006. The human LINE-1 retrotransposon creates DNA double-strand breaks. J. Mol. Biol. 357:1383-93
    • (2006) J. Mol. Biol , vol.357 , pp. 1383-1393
    • Gasior, S.L.1    Wakeman, T.P.2    Xu, B.3    Deininger, P.L.4
  • 74
    • 0035861202 scopus 로고    scopus 로고
    • The molecular biology of the SIR proteins
    • Gasser SM, Cockell MM. 2001. The molecular biology of the SIR proteins. Gene 279:1-16
    • (2001) Gene , vol.279 , pp. 1-16
    • Gasser, S.M.1    Cockell, M.M.2
  • 75
    • 23844510228 scopus 로고    scopus 로고
    • Multiple fates of L1 retrotransposition intermediates in cultured human cells
    • Gilbert N, Lutz S, Morrish TA, Moran JV. 2005. Multiple fates of L1 retrotransposition intermediates in cultured human cells. Mol. Cell Biol. 25:7780-95
    • (2005) Mol. Cell Biol , vol.25 , pp. 7780-7795
    • Gilbert, N.1    Lutz, S.2    Morrish, T.A.3    Moran, J.V.4
  • 76
    • 34547182955 scopus 로고    scopus 로고
    • Telomere-associated, endonuclese-deficient Penelope-like retroelements in diverse eukaryotes
    • Gladyshev EA, Arkhipova IR. 2007. Telomere-associated, endonuclese-deficient Penelope-like retroelements in diverse eukaryotes. Proc. Natl. Acad. Sci. USA 104:9352-57
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 9352-9357
    • Gladyshev, E.A.1    Arkhipova, I.R.2
  • 77
    • 34548799740 scopus 로고    scopus 로고
    • LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex
    • Goodier JL, Zhang L, Vetter MR, Kazazian HH Jr. 2007. LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex. Mol. Cell Biol. 27:6469-83
    • (2007) Mol. Cell Biol , vol.27 , pp. 6469-6483
    • Goodier, J.L.1    Zhang, L.2    Vetter, M.R.3    Kazazian Jr., H.H.4
  • 78
    • 0034748919 scopus 로고    scopus 로고
    • The DIRS1 group of retrotransposons
    • Goodwin TJ, Poulter RT. 2001. The DIRS1 group of retrotransposons. Mol. Biol. Evol. 18:2067-82
    • (2001) Mol. Biol. Evol , vol.18 , pp. 2067-2082
    • Goodwin, T.J.1    Poulter, R.T.2
  • 79
    • 0020402387 scopus 로고
    • Exaptation: A missing term in the science of form
    • Gould SJ, Vrba ES. 1982. Exaptation: a missing term in the science of form. Paleobiology 8:4-15
    • (1982) Paleobiology , vol.8 , pp. 4-15
    • Gould, S.J.1    Vrba, E.S.2
  • 80
    • 0035449356 scopus 로고    scopus 로고
    • Mitochondrial Mg2+ homeostasis is critical for group II intron splicing in vivo
    • Gregan J, Kolisek M, Schweyen RJ. 2001. Mitochondrial Mg2+ homeostasis is critical for group II intron splicing in vivo. Genes Dev. 15:2229-37
    • (2001) Genes Dev , vol.15 , pp. 2229-2237
    • Gregan, J.1    Kolisek, M.2    Schweyen, R.J.3
  • 81
    • 0029894237 scopus 로고    scopus 로고
    • Telomere length regulation
    • Greider CW. 1996. Telomere length regulation. Annu. Rev. Biochem. 65:337-65
    • (1996) Annu. Rev. Biochem , vol.65 , pp. 337-365
    • Greider, C.W.1
  • 82
    • 0042208453 scopus 로고    scopus 로고
    • Functional genomics reveals relationships between the retrovirus-likeTy1 element and its host Saccharomyces cerevisiae
    • Griffith JL, Coleman LE, Raymond AS, Goodson SG, Pittard WS, et al. 2003. Functional genomics reveals relationships between the retrovirus-likeTy1 element and its host Saccharomyces cerevisiae. Genetics 164:867-79
    • (2003) Genetics , vol.164 , pp. 867-879
    • Griffith, J.L.1    Coleman, L.E.2    Raymond, A.S.3    Goodson, S.G.4    Pittard, W.S.5
  • 83
    • 0029682636 scopus 로고    scopus 로고
    • Transposition: Mobile introns get into line
    • Grivell LA. 1996. Transposition: mobile introns get into line. Curr. Biol. 6:48-51
    • (1996) Curr. Biol , vol.6 , pp. 48-51
    • Grivell, L.A.1
  • 84
    • 24644516249 scopus 로고    scopus 로고
    • LINE-1 retrotransposons: Modulators of quantity and quality of mammalian gene expression?
    • Han JS, Boeke JD. 2005. LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression? BioEssays 27:775-84
    • (2005) BioEssays , vol.27 , pp. 775-784
    • Han, J.S.1    Boeke, J.D.2
  • 85
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • Han JS, Szak ST, Boeke JD. 2004. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429:268-74
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 86
    • 33751012428 scopus 로고    scopus 로고
    • Alu elements as regulators of gene expression
    • Hasler J, Strub K. 2006. Alu elements as regulators of gene expression. Nucleic Acids Res. 34:5491-97
    • (2006) Nucleic Acids Res , vol.34 , pp. 5491-5497
    • Hasler, J.1    Strub, K.2
  • 87
    • 33646840311 scopus 로고    scopus 로고
    • Alu RNP and Alu RNA regulate translation initiation in vitro
    • Hasler J, Strub K. 2006. Alu RNP and Alu RNA regulate translation initiation in vitro. Nucleic Acids Res. 34:2374-85
    • (2006) Nucleic Acids Res , vol.34 , pp. 2374-2385
    • Hasler, J.1    Strub, K.2
  • 88
    • 0025976299 scopus 로고
    • Retrotranscription of a mouse IAP sequence tagged with an indicator gene
    • Heidmann O, Heidmann T. 1991. Retrotranscription of a mouse IAP sequence tagged with an indicator gene. Cell 64:159-70
    • (1991) Cell , vol.64 , pp. 159-170
    • Heidmann, O.1    Heidmann, T.2
  • 89
    • 0028788248 scopus 로고
    • Plus-strand DNA synthesis of the yeast retrotransposon Ty1 is initiated at two sites, PPT1 next to the 3′ LTR and PPT2 within the pol gene. PPT1 is sufficient for Ty1 transposition
    • Heyman T, Agoutin B, Friant S, Wilhelm FX, Wilhelm ML. 1995. Plus-strand DNA synthesis of the yeast retrotransposon Ty1 is initiated at two sites, PPT1 next to the 3′ LTR and PPT2 within the pol gene. PPT1 is sufficient for Ty1 transposition. J. Mol. Biol. 253:291-303
    • (1995) J. Mol. Biol , vol.253 , pp. 291-303
    • Heyman, T.1    Agoutin, B.2    Friant, S.3    Wilhelm, F.X.4    Wilhelm, M.L.5
  • 90
    • 0041347893 scopus 로고    scopus 로고
    • The central PPT of the yeast retrotransposon Ty1 is not essential for transposition
    • Heyman T, Wilhelm M, Wilhelm FX. 2003. The central PPT of the yeast retrotransposon Ty1 is not essential for transposition. J. Mol. Biol. 331:315-20
    • (2003) J. Mol. Biol , vol.331 , pp. 315-320
    • Heyman, T.1    Wilhelm, M.2    Wilhelm, F.X.3
  • 91
    • 0034103860 scopus 로고    scopus 로고
    • Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation
    • Hirochika H, Okamoto H, Kakutani T. 2000. Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation. Plant Cell 12:357-69
    • (2000) Plant Cell , vol.12 , pp. 357-369
    • Hirochika, H.1    Okamoto, H.2    Kakutani, T.3
  • 92
    • 11844297811 scopus 로고    scopus 로고
    • The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function
    • Huang HR, Rowe CE, Mohr S, Jiang Y, Lambowitz AM, Perlman PS. 2005. The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function. Proc. Natl. Acad. Sci. USA 102:163-68
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 163-168
    • Huang, H.R.1    Rowe, C.E.2    Mohr, S.3    Jiang, Y.4    Lambowitz, A.M.5    Perlman, P.S.6
  • 93
    • 33846895873 scopus 로고    scopus 로고
    • Selective inhibition of Alu retrotransposition by APOBEC3G
    • Hulme AE, Bogerd HP, Cullen BR, Moran JV. 2007. Selective inhibition of Alu retrotransposition by APOBEC3G. Gene 390:199-205
    • (2007) Gene , vol.390 , pp. 199-205
    • Hulme, A.E.1    Bogerd, H.P.2    Cullen, B.R.3    Moran, J.V.4
  • 94
    • 37549014207 scopus 로고    scopus 로고
    • Argonaute proteins: Key players in RNA silencing
    • Hutvagner G, Simard MJ. 2008. Argonaute proteins: key players in RNA silencing. Nat. Rev. Mol. Cell Biol. 9:22-32
    • (2008) Nat. Rev. Mol. Cell Biol , vol.9 , pp. 22-32
    • Hutvagner, G.1    Simard, M.J.2
  • 95
    • 0346734117 scopus 로고    scopus 로고
    • A bacterial group II intron favors retrotransposition into plasmid targets
    • Ichiyanagi K, Beauregard A, Belfort M. 2003. A bacterial group II intron favors retrotransposition into plasmid targets. Proc. Natl. Acad. Sci. USA 100:15742-47
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 15742-15747
    • Ichiyanagi, K.1    Beauregard, A.2    Belfort, M.3
  • 97
    • 0035100114 scopus 로고    scopus 로고
    • Functional redundancies, distinct localizations and interactions among three fission yeast homologs of centromere protein-B
    • Irelan JT, Gutkin GI, Clarke L. 2001. Functional redundancies, distinct localizations and interactions among three fission yeast homologs of centromere protein-B. Genetics 157:1191-203
    • (2001) Genetics , vol.157 , pp. 1191-1203
    • Irelan, J.T.1    Gutkin, G.I.2    Clarke, L.3
  • 98
    • 19844379399 scopus 로고    scopus 로고
    • Retroviruses and yeast retrotransposons use overlapping sets of host genes
    • Irwin B, Aye M, Baldi P, Beliakova-Bethell N, Cheng H, et al. 2005. Retroviruses and yeast retrotransposons use overlapping sets of host genes. Genome Res. 15:641-54
    • (2005) Genome Res , vol.15 , pp. 641-654
    • Irwin, B.1    Aye, M.2    Baldi, P.3    Beliakova-Bethell, N.4    Cheng, H.5
  • 99
    • 58549098412 scopus 로고    scopus 로고
    • Deleted in proof
    • Deleted in proof
  • 100
    • 0024995219 scopus 로고
    • Self-splicing Group II and nuclear premRNA introns: How similar are they?
    • Jacquier A. 1990. Self-splicing Group II and nuclear premRNA introns: How similar are they? Trends Biochem. Sci. 15:351-54
    • (1990) Trends Biochem. Sci , vol.15 , pp. 351-354
    • Jacquier, A.1
  • 102
    • 0343776143 scopus 로고    scopus 로고
    • The yeast retrotransposons Ty1 and Ty3 require the RNA Lariat debranching enzyme, Dbr1p, for efficient accumulation of reverse transcripts
    • Karst SM, Rutz ML, Menees TM. 2000. The yeast retrotransposons Ty1 and Ty3 require the RNA Lariat debranching enzyme, Dbr1p, for efficient accumulation of reverse transcripts. Biochem. Biophys. Res. Commun. 268:112-17
    • (2000) Biochem. Biophys. Res. Commun , vol.268 , pp. 112-117
    • Karst, S.M.1    Rutz, M.L.2    Menees, T.M.3
  • 103
    • 34548705374 scopus 로고    scopus 로고
    • Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse
    • Kato Y, Kaneda M, Hata K, Kumaki K, Hisano M, et al. 2007. Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum. Mol. Genet. 16:2272-80
    • (2007) Hum. Mol. Genet , vol.16 , pp. 2272-2280
    • Kato, Y.1    Kaneda, M.2    Hata, K.3    Kumaki, K.4    Hisano, M.5
  • 104
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: Drivers of genome evolution
    • Kazazian HH Jr. 2004. Mobile elements: drivers of genome evolution. Science 303:1626-32
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian Jr., H.H.1
  • 105
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • Kazazian HH, Moran JV. 1998. The impact of L1 retrotransposons on the human genome. Nat. Genet. 19:19-24
    • (1998) Nat. Genet , vol.19 , pp. 19-24
    • Kazazian, H.H.1    Moran, J.V.2
  • 106
    • 1242297006 scopus 로고    scopus 로고
    • Emergence of vertebrate retroviruses and envelope capture
    • Kim FJ, Battini JL, Manel N, Sitbon M. 2004. Emergence of vertebrate retroviruses and envelope capture. Virology 318:183-91
    • (2004) Virology , vol.318 , pp. 183-191
    • Kim, F.J.1    Battini, J.L.2    Manel, N.3    Sitbon, M.4
  • 107
    • 0031127039 scopus 로고    scopus 로고
    • Centromeres, CENP-B and Tigger too
    • Kipling D, Warburton PE. 1997. Centromeres, CENP-B and Tigger too. Trends Genet. 13:141-45
    • (1997) Trends Genet , vol.13 , pp. 141-145
    • Kipling, D.1    Warburton, P.E.2
  • 108
    • 0345489109 scopus 로고    scopus 로고
    • Bacterial group II introns and their association with mobile genetic elements
    • Klein JR, Dunny GM. 2002. Bacterial group II introns and their association with mobile genetic elements. Front. Biosci. 7:d1843-56
    • (2002) Front. Biosci , vol.7
    • Klein, J.R.1    Dunny, G.M.2
  • 112
    • 41649116098 scopus 로고    scopus 로고
    • DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
    • Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Totoki Y, Toyoda A, et al. 2008. DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes. Genes Dev. 22:908-17
    • (2008) Genes Dev , vol.22 , pp. 908-917
    • Kuramochi-Miyagawa, S.1    Watanabe, T.2    Gotoh, K.3    Totoki, Y.4    Toyoda, A.5
  • 113
    • 35549007627 scopus 로고    scopus 로고
    • DNA-directed DNA polymerase and strand displacement activity of the reverse transcriptase encoded by the R2 retrotransposon
    • Kurzynska-Kokorniak A, Jamburuthugoda VK, Bibillo A, Eickbush TH. 2007. DNA-directed DNA polymerase and strand displacement activity of the reverse transcriptase encoded by the R2 retrotransposon. J. Mol. Biol. 374:322-33
    • (2007) J. Mol. Biol , vol.374 , pp. 322-333
    • Kurzynska-Kokorniak, A.1    Jamburuthugoda, V.K.2    Bibillo, A.3    Eickbush, T.H.4
  • 114
    • 0002671710 scopus 로고    scopus 로고
    • Group I and group II ribozymes as RNPs: Clues to the past and guides to the future
    • Cold Spring Harbor, NY: Cold Spring Harbor Lab. Press. 2nd ed
    • Lambowitz AM, Caprara MG, Zimmerly S, Perlman PS. 1999. Group I and group II ribozymes as RNPs: clues to the past and guides to the future. In The RNA World, pp. 451-85. Cold Spring Harbor, NY: Cold Spring Harbor Lab. Press. 2nd ed.
    • (1999) The RNA World , pp. 451-485
    • Lambowitz, A.M.1    Caprara, M.G.2    Zimmerly, S.3    Perlman, P.S.4
  • 115
    • 23944498152 scopus 로고    scopus 로고
    • Group II intron homing endonucleases: Ribonucleoprotein complexes with programmable target specificity
    • ed. M Belfort, V Derbyshire, BL Stoddard, DW Wood, pp, Berlin: Springer-Verlag
    • Lambowitz AM, Mohr G, Zimmerely S. 2005. Group II intron homing endonucleases: ribonucleoprotein complexes with programmable target specificity. In Homing Endonucleases and Inteins, ed. M Belfort, V Derbyshire, BL Stoddard, DW Wood, pp. 121-45. Berlin: Springer-Verlag
    • (2005) Homing Endonucleases and Inteins , pp. 121-145
    • Lambowitz, A.M.1    Mohr, G.2    Zimmerely, S.3
  • 119
    • 0034100566 scopus 로고    scopus 로고
    • Nucleotide excision repair/TFIIH helicases RAD3 and SSL2 inhibit short-sequence recombination and Ty1 retrotransposition by similar mechanisms
    • Lee BS, Bi L, Garfinkel DJ, Bailis AM. 2000. Nucleotide excision repair/TFIIH helicases RAD3 and SSL2 inhibit short-sequence recombination and Ty1 retrotransposition by similar mechanisms. Mol. Cell Biol. 20:2436-45
    • (2000) Mol. Cell Biol , vol.20 , pp. 2436-2445
    • Lee, B.S.1    Bi, L.2    Garfinkel, D.J.3    Bailis, A.M.4
  • 120
    • 0031953262 scopus 로고    scopus 로고
    • Posttranslational inhibition of Ty1 retrotransposition by nucleotide excision repair/transcription factor TFIIH subunits Ssl2p and Rad3p
    • Lee BS, Lichtenstein CP, Faiola B, Rinckel LA, Wysock W, et al. 1998. Posttranslational inhibition of Ty1 retrotransposition by nucleotide excision repair/transcription factor TFIIH subunits Ssl2p and Rad3p. Genetics 148:1743-61
    • (1998) Genetics , vol.148 , pp. 1743-1761
    • Lee, B.S.1    Lichtenstein, C.P.2    Faiola, B.3    Rinckel, L.A.4    Wysock, W.5
  • 121
    • 0043224223 scopus 로고    scopus 로고
    • RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli
    • Lee K, Zhan X, Gao J, Qiu J, Feng Y, et al. 2003. RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli. Cell 114:623-34
    • (2003) Cell , vol.114 , pp. 623-634
    • Lee, K.1    Zhan, X.2    Gao, J.3    Qiu, J.4    Feng, Y.5
  • 122
    • 41549134052 scopus 로고    scopus 로고
    • Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators
    • Leem YE, Ripmaster TL, Kelly FD, Ebina H, Heincelman ME, et al. 2008. Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators. Mol. Cell 30:98-107
    • (2008) Mol. Cell , vol.30 , pp. 98-107
    • Leem, Y.E.1    Ripmaster, T.L.2    Kelly, F.D.3    Ebina, H.4    Heincelman, M.E.5
  • 123
    • 18944382213 scopus 로고    scopus 로고
    • Happy together: The life and times of Ty retrotransposons and their hosts
    • Lesage P, Todeschini AL. 2005. Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet. Genome Res. 110:70-90
    • (2005) Cytogenet. Genome Res , vol.110 , pp. 70-90
    • Lesage, P.1    Todeschini, A.L.2
  • 125
    • 14544290992 scopus 로고    scopus 로고
    • Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex
    • Liti G, Peruffo A, James SA, Roberts IN, Louis EJ. 2005. Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex. Yeast 22:177-92
    • (2005) Yeast , vol.22 , pp. 177-192
    • Liti, G.1    Peruffo, A.2    James, S.A.3    Roberts, I.N.4    Louis, E.J.5
  • 126
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • Luan DD, Korman MH, Jakubczak JL, Eickbush TH. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 127
    • 0034917751 scopus 로고    scopus 로고
    • Phylogenetic analysis of ribonuclease H domains suggest a late, chimeric origin of LTR retrotransposable elements and retroviruses
    • Malik HS, Eickbush TH. 2001. Phylogenetic analysis of ribonuclease H domains suggest a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res. 11:1187-97
    • (2001) Genome Res , vol.11 , pp. 1187-1197
    • Malik, H.S.1    Eickbush, T.H.2
  • 128
    • 39549103642 scopus 로고    scopus 로고
    • Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
    • Mariner PD, Walters RD, Espinoza CA, Drullinger LF, Wagner SD, et al. 2008. Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol. Cell 29:499-509
    • (2008) Mol. Cell , vol.29 , pp. 499-509
    • Mariner, P.D.1    Walters, R.D.2    Espinoza, C.A.3    Drullinger, L.F.4    Wagner, S.D.5
  • 129
    • 33645217818 scopus 로고    scopus 로고
    • The ORF1 protein encoded by LINE-1: Structure and function during L1 retrotransposition
    • Martin SL. 2006. The ORF1 protein encoded by LINE-1: structure and function during L1 retrotransposition. J. Biomed. Biotechnol. 2006:1-6
    • (2006) J. Biomed. Biotechnol , vol.2006 , pp. 1-6
    • Martin, S.L.1
  • 130
    • 3042725448 scopus 로고    scopus 로고
    • The RmInt1 group II intron has two different retrohoming pathways for mobility using predominantly the nascent lagging strand at DNA replication forks for priming
    • Martinez-Abarca F, Barrientos-Duran A, Fernandez-Lopez M, Toro N. 2004. The RmInt1 group II intron has two different retrohoming pathways for mobility using predominantly the nascent lagging strand at DNA replication forks for priming. Nucleic Acids Res. 32:2880-88
    • (2004) Nucleic Acids Res , vol.32 , pp. 2880-2888
    • Martinez-Abarca, F.1    Barrientos-Duran, A.2    Fernandez-Lopez, M.3    Toro, N.4
  • 131
    • 0034024848 scopus 로고    scopus 로고
    • Homing of a bacterial group II intron with an intron-encoded protein lacking a recognizable endonuclease domain
    • Martínez-Abarca F, Garcia-Rodriguez FM, Toro N. 2000. Homing of a bacterial group II intron with an intron-encoded protein lacking a recognizable endonuclease domain. Mol. Microbiol. 35:1405-12
    • (2000) Mol. Microbiol , vol.35 , pp. 1405-1412
    • Martínez-Abarca, F.1    Garcia-Rodriguez, F.M.2    Toro, N.3
  • 132
    • 0034326314 scopus 로고    scopus 로고
    • RecA-independent ectopic transposition in vivo of a bacterial group II intron
    • Martínez-Abarca F, Toro N. 2000. RecA-independent ectopic transposition in vivo of a bacterial group II intron. Nucleic Acids Res. 28:4397-402
    • (2000) Nucleic Acids Res , vol.28 , pp. 4397-4402
    • Martínez-Abarca, F.1    Toro, N.2
  • 133
    • 0031744472 scopus 로고    scopus 로고
    • Characterization and splicing in vivo of a Sinorhizobium meliloti group II intron associated with particular insertion sequences of the IS630-Tc1/IS3 retroposon superfamily
    • Martinez-Abarca F, Zekri S, Toro N. 1998. Characterization and splicing in vivo of a Sinorhizobium meliloti group II intron associated with particular insertion sequences of the IS630-Tc1/IS3 retroposon superfamily. Mol. Microbiol. 28:1295-306
    • (1998) Mol. Microbiol , vol.28 , pp. 1295-1306
    • Martinez-Abarca, F.1    Zekri, S.2    Toro, N.3
  • 135
    • 34447535540 scopus 로고    scopus 로고
    • Host factors that control long terminal repeat retrotransposons in Saccharomyces cerevisiae: Implications for regulation of mammalian retroviruses
    • Maxwell PH, Curcio MJ. 2007. Host factors that control long terminal repeat retrotransposons in Saccharomyces cerevisiae: implications for regulation of mammalian retroviruses. Eukaryot. Cell 6:1069-80
    • (2007) Eukaryot. Cell , vol.6 , pp. 1069-1080
    • Maxwell, P.H.1    Curcio, M.J.2
  • 136
    • 20444366230 scopus 로고    scopus 로고
    • The Ku protein complex is involved in length regulation of Drosophila telomeres
    • Melnikova L, Biessmann H, Georgiev P. 2005. The Ku protein complex is involved in length regulation of Drosophila telomeres. Genetics 170:221-35
    • (2005) Genetics , vol.170 , pp. 221-235
    • Melnikova, L.1    Biessmann, H.2    Georgiev, P.3
  • 137
    • 0029066770 scopus 로고
    • Structure and activities of group II introns
    • Michel F, Ferat J-L. 1995. Structure and activities of group II introns. Annu. Rev. Biochem. 64:435-61
    • (1995) Annu. Rev. Biochem , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.-L.2
  • 138
    • 0030963986 scopus 로고    scopus 로고
    • Homing of a group II intron from Lactococcus lactis subsp. lactis ML3
    • Mills DA, Manias DA, McKay LL, Dunny GM. 1997. Homing of a group II intron from Lactococcus lactis subsp. lactis ML3. J. Bacteriol. 179:6107-11
    • (1997) J. Bacteriol , vol.179 , pp. 6107-6111
    • Mills, D.A.1    Manias, D.A.2    McKay, L.L.3    Dunny, G.M.4
  • 139
    • 0029949972 scopus 로고    scopus 로고
    • Splicing of a group II intron involved in the conjugative transfer of pRS01 in lactococci
    • Mills DA, McKay LL, Dunny GM. 1996. Splicing of a group II intron involved in the conjugative transfer of pRS01 in lactococci. J. Bacteriol. 178:3531-38
    • (1996) J. Bacteriol , vol.178 , pp. 3531-3538
    • Mills, D.A.1    McKay, L.L.2    Dunny, G.M.3
  • 140
    • 37749022256 scopus 로고    scopus 로고
    • Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro
    • Mohr G, Del Campo M, Mohr S, Yang Q, Jia H, et al. 2008. Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro. J. Mol. Biol. 375:1344-64
    • (2008) J. Mol. Biol , vol.375 , pp. 1344-1364
    • Mohr, G.1    Del Campo, M.2    Mohr, S.3    Yang, Q.4    Jia, H.5
  • 141
    • 85158032394 scopus 로고    scopus 로고
    • Mammalian LINE-1 retrotransposons and related elements
    • Moran JV, Gilbert N. 2002. Mammalian LINE-1 retrotransposons and related elements. See Ref. 52a, pp. 836-69
    • (2002) See Ref , vol.52 a , pp. 836-869
    • Moran, J.V.1    Gilbert, N.2
  • 145
    • 20544466648 scopus 로고    scopus 로고
    • Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
    • Muotri AR, Chu VT, Marchetto MC, Deng W, Moran JV, Gage FH. 2005. Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition. Nature 435:903-10
    • (2005) Nature , vol.435 , pp. 903-910
    • Muotri, A.R.1    Chu, V.T.2    Marchetto, M.C.3    Deng, W.4    Moran, J.V.5    Gage, F.H.6
  • 146
    • 38449096702 scopus 로고    scopus 로고
    • The necessary junk: New functions for transposable elements
    • Muotri AR, Marchetto MC, Coufal NG, Gage FH. 2007. The necessary junk: new functions for transposable elements. Hum. Mol. Genet. 16(Spec. No. 2):R159-67
    • (2007) Hum. Mol. Genet , vol.16 , Issue.SPEC. 2
    • Muotri, A.R.1    Marchetto, M.C.2    Coufal, N.G.3    Gage, F.H.4
  • 147
    • 0037099483 scopus 로고    scopus 로고
    • Fission yeast CENP-B homologs nucleate centromeric heterochromatin by promoting heterochromatin-specific histone tail modifications
    • Nakagawa H, Lee JK, Hurwitz J, Allshire RC, Nakayama J, et al. 2002. Fission yeast CENP-B homologs nucleate centromeric heterochromatin by promoting heterochromatin-specific histone tail modifications. Genes Dev. 16:1766-78
    • (2002) Genes Dev , vol.16 , pp. 1766-1778
    • Nakagawa, H.1    Lee, J.K.2    Hurwitz, J.3    Allshire, R.C.4    Nakayama, J.5
  • 148
    • 40849098073 scopus 로고    scopus 로고
    • Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis
    • Nyswaner KM, Checkley MA, Yi M, Stephens RM, Garfinkel DJ. 2008. Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis. Genetics 178:197-214
    • (2008) Genetics , vol.178 , pp. 197-214
    • Nyswaner, K.M.1    Checkley, M.A.2    Yi, M.3    Stephens, R.M.4    Garfinkel, D.J.5
  • 149
    • 23844437243 scopus 로고    scopus 로고
    • SINEs and LINEs: Symbionts of eukaryotic genomes with a common tail
    • Ohshima K, Okada N. 2005. SINEs and LINEs: symbionts of eukaryotic genomes with a common tail. Cytogenet. Genome Res. 110:475-90
    • (2005) Cytogenet. Genome Res , vol.110 , pp. 475-490
    • Ohshima, K.1    Okada, N.2
  • 150
    • 0346786214 scopus 로고    scopus 로고
    • Retrotransposons provide an evolutionarily robust nontelomerase mechanism to maintain telomeres
    • Pardue ML, DeBaryshe PG. 2003. Retrotransposons provide an evolutionarily robust nontelomerase mechanism to maintain telomeres. Annu. Rev. Genet. 37:485-511
    • (2003) Annu. Rev. Genet , vol.37 , pp. 485-511
    • Pardue, M.L.1    DeBaryshe, P.G.2
  • 151
    • 0344826526 scopus 로고    scopus 로고
    • RNA truncation by premature polyadenylation attenuates human mobile element activity
    • Perepelitsa-Belancio V, Deininger P. 2003. RNA truncation by premature polyadenylation attenuates human mobile element activity. Nat. Genet. 35:363-66
    • (2003) Nat. Genet , vol.35 , pp. 363-366
    • Perepelitsa-Belancio, V.1    Deininger, P.2
  • 152
    • 30644465699 scopus 로고    scopus 로고
    • DNA polymerization by the reverse transcriptase of the human L1 retrotransposon on its own template in vitro
    • Piskareva O, Schmatchenko V. 2006. DNA polymerization by the reverse transcriptase of the human L1 retrotransposon on its own template in vitro. FEBS Lett. 580:661-68
    • (2006) FEBS Lett , vol.580 , pp. 661-668
    • Piskareva, O.1    Schmatchenko, V.2
  • 153
    • 1942439667 scopus 로고    scopus 로고
    • Switching from high-fidelity replicases to low-fidelity lesion-bypass polymerases
    • Plosky BS, Woodgate R. 2004. Switching from high-fidelity replicases to low-fidelity lesion-bypass polymerases. Curr. Opin. Genet. Devel. 14:113-19
    • (2004) Curr. Opin. Genet. Devel , vol.14 , pp. 113-119
    • Plosky, B.S.1    Woodgate, R.2
  • 154
    • 0027317654 scopus 로고
    • Biochemical and electron microscope analyses of the DNA reverse transcripts present in the virus-like particles of the yeast transposon Ty1. Identification of a second origin of Ty1DNA plus strand synthesis
    • Pochart P, Agoutin B, Rousset S, Chanet R, Doroszkiewicz V, Heyman T. 1993. Biochemical and electron microscope analyses of the DNA reverse transcripts present in the virus-like particles of the yeast transposon Ty1. Identification of a second origin of Ty1DNA plus strand synthesis. Nucleic Acids Res. 21:3513-20
    • (1993) Nucleic Acids Res , vol.21 , pp. 3513-3520
    • Pochart, P.1    Agoutin, B.2    Rousset, S.3    Chanet, R.4    Doroszkiewicz, V.5    Heyman, T.6
  • 155
    • 33746377600 scopus 로고    scopus 로고
    • Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes
    • Polak P, Domany E. 2006. Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes. BMC Genomics 7:133
    • (2006) BMC Genomics , vol.7 , pp. 133
    • Polak, P.1    Domany, E.2
  • 156
    • 4143082818 scopus 로고    scopus 로고
    • Telomeres: Not all breaks are equal
    • Purdy A, Su TT. 2004. Telomeres: not all breaks are equal. Curr. Biol. 14:R613-14
    • (2004) Curr. Biol , vol.14
    • Purdy, A.1    Su, T.T.2
  • 157
    • 0031900201 scopus 로고    scopus 로고
    • Inorganic polyphosphate in Escherichia coli: The phosphate regulon and the stringent response
    • Rao NN, Liu S, Kornberg A. 1998. Inorganic polyphosphate in Escherichia coli: the phosphate regulon and the stringent response. J. Bacteriol. 180:2186-93
    • (1998) J. Bacteriol , vol.180 , pp. 2186-2193
    • Rao, N.N.1    Liu, S.2    Kornberg, A.3
  • 158
    • 0033972502 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition
    • Rattray AJ, Shafer BK, Garfinkel DJ. 2000. The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition. Genetics 154:543-56
    • (2000) Genetics , vol.154 , pp. 543-556
    • Rattray, A.J.1    Shafer, B.K.2    Garfinkel, D.J.3
  • 159
    • 41649117808 scopus 로고    scopus 로고
    • An infectious progenitor for the murine IAP retrotransposon: Emergence of an intracellular genetic parasite from an ancient retrovirus
    • Ribet D, Harper F, Dupressoir A, Dewannieux M, Pierron G, Heidmann T. 2008. An infectious progenitor for the murine IAP retrotransposon: emergence of an intracellular genetic parasite from an ancient retrovirus. Genome Res. 18:597-609
    • (2008) Genome Res , vol.18 , pp. 597-609
    • Ribet, D.1    Harper, F.2    Dupressoir, A.3    Dewannieux, M.4    Pierron, G.5    Heidmann, T.6
  • 160
  • 161
    • 27944504788 scopus 로고    scopus 로고
    • Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia
    • Roman-Gomez J, Jimenez-Velasco A, Agirre X, Cervantes F, Sanchez J, et al. 2005. Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia. Oncogene 24:7213-23
    • (2005) Oncogene , vol.24 , pp. 7213-7223
    • Roman-Gomez, J.1    Jimenez-Velasco, A.2    Agirre, X.3    Cervantes, F.4    Sanchez, J.5
  • 162
    • 0037100664 scopus 로고    scopus 로고
    • Selective stimulation of translational expression by Alu RNA
    • Rubin CM, Kimura RH, Schmid CW. 2002. Selective stimulation of translational expression by Alu RNA. Nucleic Acids Res. 30:3253-61
    • (2002) Nucleic Acids Res , vol.30 , pp. 3253-3261
    • Rubin, C.M.1    Kimura, R.H.2    Schmid, C.W.3
  • 163
    • 0035206024 scopus 로고    scopus 로고
    • Transcriptional activation of short interspersed elements by DNA-damaging agents
    • Rudin CM, Thompson CB. 2001. Transcriptional activation of short interspersed elements by DNA-damaging agents. Genes Chromosomes Cancer 30:64-71
    • (2001) Genes Chromosomes Cancer , vol.30 , pp. 64-71
    • Rudin, C.M.1    Thompson, C.B.2
  • 164
    • 34547770887 scopus 로고    scopus 로고
    • Causes and consequences of DNA repair activity modulation during stationary phase in Escherichia coli
    • Saint-Ruf C, Pesut J, Sopta M, Matic I. 2007. Causes and consequences of DNA repair activity modulation during stationary phase in Escherichia coli. Crit. Rev. Biochem. Mol. Biol. 42:259-70
    • (2007) Crit. Rev. Biochem. Mol. Biol , vol.42 , pp. 259-270
    • Saint-Ruf, C.1    Pesut, J.2    Sopta, M.3    Matic, I.4
  • 165
    • 0024603522 scopus 로고
    • Exonuclease III and the catalase hydroperoxidase II in Escherichia coli are both regulated by the katF gene product
    • Sak BD, Eisenstark A, Touati D. 1989. Exonuclease III and the catalase hydroperoxidase II in Escherichia coli are both regulated by the katF gene product. Proc. Natl. Acad. Sci. USA 86:3271-75
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 3271-3275
    • Sak, B.D.1    Eisenstark, A.2    Touati, D.3
  • 166
    • 0033551494 scopus 로고    scopus 로고
    • RNA and protein catalysis in group II intron splicing and mobility reactions using purified components
    • Saldanha R, Chen B, Wank H, Matsuura M, Edwards J, Lambowitz AM. 1999. RNA and protein catalysis in group II intron splicing and mobility reactions using purified components. Biochemistry 38:9069-83
    • (1999) Biochemistry , vol.38 , pp. 9069-9083
    • Saldanha, R.1    Chen, B.2    Wank, H.3    Matsuura, M.4    Edwards, J.5    Lambowitz, A.M.6
  • 167
    • 0242409126 scopus 로고    scopus 로고
    • Relationship between RNA lariat debranching and Ty1 element retrotransposition
    • Salem LA, Boucher CL, Menees TM. 2003. Relationship between RNA lariat debranching and Ty1 element retrotransposition. J. Virol. 77:12795-806
    • (2003) J. Virol , vol.77 , pp. 12795-12806
    • Salem, L.A.1    Boucher, C.L.2    Menees, T.M.3
  • 170
    • 32044437792 scopus 로고    scopus 로고
    • Telomere elongation is under the control of the RNAi-based mechanism in the Drosophila germline
    • Savitsky M, Kwon D, Georgiev P, Kalmykova A, Gvozdev V. 2006. Telomere elongation is under the control of the RNAi-based mechanism in the Drosophila germline. Genes Dev. 20:345-54
    • (2006) Genes Dev , vol.20 , pp. 345-354
    • Savitsky, M.1    Kwon, D.2    Georgiev, P.3    Kalmykova, A.4    Gvozdev, V.5
  • 171
    • 0035692614 scopus 로고    scopus 로고
    • Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance
    • Scholes DT, Banerjee M, Bowen B, Curcio MJ. 2001. Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance. Genetics 159:1449-65
    • (2001) Genetics , vol.159 , pp. 1449-1465
    • Scholes, D.T.1    Banerjee, M.2    Bowen, B.3    Curcio, M.J.4
  • 173
    • 34548454995 scopus 로고    scopus 로고
    • SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast
    • Sehgal A, Lee CY, Espenshade PJ. 2007. SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast. PLoS Genet. 3:e131
    • (2007) PLoS Genet , vol.3
    • Sehgal, A.1    Lee, C.Y.2    Espenshade, P.J.3
  • 175
    • 0024961642 scopus 로고
    • Mitochondrial splicing requires a protein from a novel helicase family
    • Seraphin B, Simon M, Boulet A, Faye G. 1989. Mitochondrial splicing requires a protein from a novel helicase family. Nature 337:84-87
    • (1989) Nature , vol.337 , pp. 84-87
    • Seraphin, B.1    Simon, M.2    Boulet, A.3    Faye, G.4
  • 176
    • 0025265642 scopus 로고
    • UV light and ionizing radiations cause programmed death of rat chloroleukaemia cells by inducing retropositions of a mobile DNA element (L1Rn)
    • Servomaa K, Rytomaa T. 1990. UV light and ionizing radiations cause programmed death of rat chloroleukaemia cells by inducing retropositions of a mobile DNA element (L1Rn). Int. J. Radiat. Biol. 57:331-43
    • (1990) Int. J. Radiat. Biol , vol.57 , pp. 331-343
    • Servomaa, K.1    Rytomaa, T.2
  • 177
    • 0027939848 scopus 로고
    • Efficient homologous recombination of Ty1 element cDNA when integration is blocked
    • Sharon G, Burkett TJ, Garfinkel DJ. 1994. Efficient homologous recombination of Ty1 element cDNA when integration is blocked. Mol. Cell Biol. 14:6540-51
    • (1994) Mol. Cell Biol , vol.14 , pp. 6540-6551
    • Sharon, G.1    Burkett, T.J.2    Garfinkel, D.J.3
  • 178
    • 0026261876 scopus 로고
    • Five easy pieces
    • Sharp PA. 1991. Five easy pieces. Science 254:663
    • (1991) Science , vol.254 , pp. 663
    • Sharp, P.A.1
  • 179
    • 0030016467 scopus 로고    scopus 로고
    • Splicing of a group II intron in a functional transfer gene of Lactococcus lactis
    • Shearman C, Godon J-J, Gasson M. 1996. Splicing of a group II intron in a functional transfer gene of Lactococcus lactis. Mol. Microbiol. 21:45-53
    • (1996) Mol. Microbiol , vol.21 , pp. 45-53
    • Shearman, C.1    Godon, J.-J.2    Gasson, M.3
  • 180
    • 0037365789 scopus 로고    scopus 로고
    • ATM and related protein kinases: Safeguarding genome integrity
    • Shiloh Y. 2003. ATM and related protein kinases: safeguarding genome integrity. Nat. Rev. Cancer 3:155-68
    • (2003) Nat. Rev. Cancer , vol.3 , pp. 155-168
    • Shiloh, Y.1
  • 181
    • 33748577987 scopus 로고    scopus 로고
    • Alu elements within human mRNAs are probable microRNA targets
    • Smalheiser NR, Torvik VI. 2006. Alu elements within human mRNAs are probable microRNA targets. Trends Genet. 22:532-36
    • (2006) Trends Genet , vol.22 , pp. 532-536
    • Smalheiser, N.R.1    Torvik, V.I.2
  • 182
    • 26944475584 scopus 로고    scopus 로고
    • Recruitment of host functions suggests a repair pathway for late steps in group II intron retrohoming
    • Smith D, Zhong J, Matsuura M, Lambowitz AM, Belfort M. 2005. Recruitment of host functions suggests a repair pathway for late steps in group II intron retrohoming. Genes Dev. 19:2477-87
    • (2005) Genes Dev , vol.19 , pp. 2477-2487
    • Smith, D.1    Zhong, J.2    Matsuura, M.3    Lambowitz, A.M.4    Belfort, M.5
  • 183
    • 13944266785 scopus 로고    scopus 로고
    • A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon
    • Soifer HS, Zaragoza A, Peyvan M, Behlke MA, Rossi JJ. 2005. A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon. Nucleic Acids Res. 33:846-56
    • (2005) Nucleic Acids Res , vol.33 , pp. 846-856
    • Soifer, H.S.1    Zaragoza, A.2    Peyvan, M.3    Behlke, M.A.4    Rossi, J.J.5
  • 184
    • 33847652952 scopus 로고    scopus 로고
    • A DEAD protein that activates intron self-splicing without unwinding RNA
    • Solem A, Zingler N, Pyle AM. 2006. A DEAD protein that activates intron self-splicing without unwinding RNA. Mol. Cell 24:611-17
    • (2006) Mol. Cell , vol.24 , pp. 611-617
    • Solem, A.1    Zingler, N.2    Pyle, A.M.3
  • 185
    • 0034999474 scopus 로고    scopus 로고
    • Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes
    • Speek M. 2001. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Mol. Cell Biol. 21:1973-85
    • (2001) Mol. Cell Biol , vol.21 , pp. 1973-1985
    • Speek, M.1
  • 186
    • 33745184896 scopus 로고    scopus 로고
    • APOBEC3B and APOBEC3F inhibit L1 retrotransposition by a DNA deamination-independent mechanism
    • Stenglein MD, Harris RS. 2006. APOBEC3B and APOBEC3F inhibit L1 retrotransposition by a DNA deamination-independent mechanism. J. Biol. Chem. 281:16837-41
    • (2006) J. Biol. Chem , vol.281 , pp. 16837-16841
    • Stenglein, M.D.1    Harris, R.S.2
  • 187
    • 33645079143 scopus 로고    scopus 로고
    • Activation of human long interspersed nuclear element 1 retrotransposition by benzo(a)pyrene, an ubiquitous environmental carcinogen
    • Stribinskis V, Ramos KS. 2006. Activation of human long interspersed nuclear element 1 retrotransposition by benzo(a)pyrene, an ubiquitous environmental carcinogen. Cancer Res. 66:2616-20
    • (2006) Cancer Res , vol.66 , pp. 2616-2620
    • Stribinskis, V.1    Ramos, K.S.2
  • 188
    • 0037277530 scopus 로고    scopus 로고
    • The Rad27 (Fen-1) nuclease inhibits Ty1 mobility in Saccharomyces cerevisiae
    • Sundararajan A, Lee BS, Garfinkel DJ. 2003. The Rad27 (Fen-1) nuclease inhibits Ty1 mobility in Saccharomyces cerevisiae. Genetics 163:55-67
    • (2003) Genetics , vol.163 , pp. 55-67
    • Sundararajan, A.1    Lee, B.S.2    Garfinkel, D.J.3
  • 189
    • 58549090285 scopus 로고    scopus 로고
    • Deleted in proof
    • Deleted in proof
  • 190
    • 0025223152 scopus 로고
    • Identification, characterization, and cell specificity of a human LINE-1 promoter
    • Swergold GD. 1990. Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol. Cell Biol. 10:6718-29
    • (1990) Mol. Cell Biol , vol.10 , pp. 6718-6729
    • Swergold, G.D.1
  • 191
    • 0342905062 scopus 로고    scopus 로고
    • Members of the SRY family regulate the human LINE retrotransposons
    • Tchenio T, Casella JF, Heidmann T. 2000. Members of the SRY family regulate the human LINE retrotransposons. Nucleic Acids Res. 28:411-15
    • (2000) Nucleic Acids Res , vol.28 , pp. 411-415
    • Tchenio, T.1    Casella, J.F.2    Heidmann, T.3
  • 192
    • 33750936780 scopus 로고    scopus 로고
    • Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone
    • Tijerina P, Bhaskaran H, Russell R. 2006. Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone. Proc. Natl. Acad. Sci. USA 103:16698-703
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 16698-16703
    • Tijerina, P.1    Bhaskaran, H.2    Russell, R.3
  • 193
    • 2542440567 scopus 로고    scopus 로고
    • Error-prone replication for better or worse
    • Tippin B, Pham P, Goodman MF. 2004. Error-prone replication for better or worse. Trends Microbiol. 12:288-95
    • (2004) Trends Microbiol , vol.12 , pp. 288-295
    • Tippin, B.1    Pham, P.2    Goodman, M.F.3
  • 194
    • 33645222762 scopus 로고    scopus 로고
    • Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast
    • Todd BL, Stewart EV, Burg JS, Hughes AL, Espenshade PJ. 2006. Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast. Mol. Cell Biol. 26:2817-31
    • (2006) Mol. Cell Biol , vol.26 , pp. 2817-2831
    • Todd, B.L.1    Stewart, E.V.2    Burg, J.S.3    Hughes, A.L.4    Espenshade, P.J.5
  • 195
    • 0028925748 scopus 로고
    • Tightly regulated, developmentally specific expression of the first open reading frame from LINE-1 during mouse embryogenesis
    • Trelogan SA, Martin SL. 1995. Tightly regulated, developmentally specific expression of the first open reading frame from LINE-1 during mouse embryogenesis. Proc. Natl. Acad. Sci. USA 92:1520-24
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 1520-1524
    • Trelogan, S.A.1    Martin, S.L.2
  • 196
    • 0036164493 scopus 로고    scopus 로고
    • Structural analysis of aberrant chromosomes that occur spontaneously in diploid Saccharomyces cerevisiae: Retrotransposon Ty1 plays a crucial role in chromosomal rearrangements
    • Umezu K, Hiraoka M, Mori M, Maki H. 2002. Structural analysis of aberrant chromosomes that occur spontaneously in diploid Saccharomyces cerevisiae: retrotransposon Ty1 plays a crucial role in chromosomal rearrangements. Genetics 160:97-110
    • (2002) Genetics , vol.160 , pp. 97-110
    • Umezu, K.1    Hiraoka, M.2    Mori, M.3    Maki, H.4
  • 197
    • 38549138272 scopus 로고    scopus 로고
    • Genomics: Fighting fire with fire
    • Voytas DF. 2008. Genomics: fighting fire with fire. Nature 451:412-13
    • (2008) Nature , vol.451 , pp. 412-413
    • Voytas, D.F.1
  • 198
    • 85118513711 scopus 로고    scopus 로고
    • Ty1 and Ty5 of Saccharomyces cerevisiae
    • Voytas DF, Boeke JD. 2002. Ty1 and Ty5 of Saccharomyces cerevisiae. See Ref. 52a, pp. 631-62
    • (2002) See Ref , vol.52 a , pp. 631-662
    • Voytas, D.F.1    Boeke, J.D.2
  • 199
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh CP, Chaillet JR, Bestor TH. 1998. Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat. Genet. 20:116-17
    • (1998) Nat. Genet , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 200
    • 0036591885 scopus 로고    scopus 로고
    • SINEs and LINEs: The art of biting the hand that feeds you
    • Weiner AM. 2002. SINEs and LINEs: the art of biting the hand that feeds you. Curr. Opin. Cell Biol. 14:343-50
    • (2002) Curr. Opin. Cell Biol , vol.14 , pp. 343-350
    • Weiner, A.M.1
  • 202
    • 36249023071 scopus 로고    scopus 로고
    • A unified classification system for eukaryotic transposable elements
    • Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, et al. 2007. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 8:973-82
    • (2007) Nat. Rev. Genet , vol.8 , pp. 973-982
    • Wicker, T.1    Sabot, F.2    Hua-Van, A.3    Bennetzen, J.L.4    Capy, P.5
  • 203
    • 0026700037 scopus 로고
    • The nuclear gene MRS2 is essential for the excision of Group II introns from yeast mitochondrial transcripts in vivo
    • Wiesenberger G, Waldherr M, Schweyen RJ. 1992. The nuclear gene MRS2 is essential for the excision of Group II introns from yeast mitochondrial transcripts in vivo. J. Biol. Chem. 267:6963-69
    • (1992) J. Biol. Chem , vol.267 , pp. 6963-6969
    • Wiesenberger, G.1    Waldherr, M.2    Schweyen, R.J.3
  • 204
    • 33748363713 scopus 로고    scopus 로고
    • L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells
    • Yang N, Kazazian HH Jr. 2006. L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells. Nat. Struct. Mol. Biol. 13:763-71
    • (2006) Nat. Struct. Mol. Biol , vol.13 , pp. 763-771
    • Yang, N.1    Kazazian Jr., H.H.2
  • 205
    • 0345604433 scopus 로고    scopus 로고
    • An important role for RUNX3 in human L1 transcription and retrotransposition
    • Yang N, Zhang L, Zhang Y, Kazazian HH Jr. 2003. An important role for RUNX3 in human L1 transcription and retrotransposition. Nucleic Acids. Res. 31:4929-40
    • (2003) Nucleic Acids. Res , vol.31 , pp. 4929-4940
    • Yang, N.1    Zhang, L.2    Zhang, Y.3    Kazazian Jr., H.H.4
  • 207
    • 0034703073 scopus 로고    scopus 로고
    • The Brf and TATA-binding protein subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3
    • Yieh L, Kassavetis G, Geiduschek EP, Sandmeyer SB. 2000. The Brf and TATA-binding protein subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3. J. Biol. Chem. 275:29800-7
    • (2000) J. Biol. Chem , vol.275 , pp. 29800-29807
    • Yieh, L.1    Kassavetis, G.2    Geiduschek, E.P.3    Sandmeyer, S.B.4
  • 208
    • 0035504192 scopus 로고    scopus 로고
    • Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription
    • Yu F, Zingler N, Schumann G, Stratling WH. 2001. Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription. Nucleic Acids Res. 29:4493-501
    • (2001) Nucleic Acids Res , vol.29 , pp. 4493-4501
    • Yu, F.1    Zingler, N.2    Schumann, G.3    Stratling, W.H.4
  • 209
    • 33748596625 scopus 로고    scopus 로고
    • Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons
    • Zhang XH, Chasin LA. 2006. Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons. Proc. Natl. Acad. Sci. USA 103:13427-32
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 13427-13432
    • Zhang, X.H.1    Chasin, L.A.2
  • 210
    • 28044460513 scopus 로고    scopus 로고
    • Inaugural article: A bacterial group II intron-encoded reverse transcriptase localizes to cellular poles
    • Zhao J, Lambowitz AM. 2005. Inaugural article: a bacterial group II intron-encoded reverse transcriptase localizes to cellular poles. Proc. Natl. Acad. Sci. USA 102:16133-40
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 16133-16140
    • Zhao, J.1    Lambowitz, A.M.2
  • 211
    • 45849122865 scopus 로고    scopus 로고
    • Group II intron protein localization and insertion sites are affected by polyphosphate
    • In press
    • Zhao J, Niu W, Marcotte E, Lambowitz A. 2008. Group II intron protein localization and insertion sites are affected by polyphosphate. PLoS Biol. In press
    • (2008) PLoS Biol
    • Zhao, J.1    Niu, W.2    Marcotte, E.3    Lambowitz, A.4
  • 212
    • 0037444087 scopus 로고    scopus 로고
    • Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker
    • Zhong J, Karberg M, Lambowitz AM. 2003. Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker. Nucleic Acids Res. 31:1656-64
    • (2003) Nucleic Acids Res , vol.31 , pp. 1656-1664
    • Zhong, J.1    Karberg, M.2    Lambowitz, A.M.3
  • 213
    • 0042236980 scopus 로고    scopus 로고
    • Group II intron mobility using nascent strands at DNA replication forks to prime reverse transcription
    • Zhong J, Lambowitz AM. 2003. Group II intron mobility using nascent strands at DNA replication forks to prime reverse transcription. EMBO J. 22:4555-65
    • (2003) EMBO J , vol.22 , pp. 4555-4565
    • Zhong, J.1    Lambowitz, A.M.2
  • 214
    • 0033865175 scopus 로고    scopus 로고
    • Regulation of intron function: Efficient splicing in vivo of a bacterial group II intron requires a functional promoter within the intron
    • Zhou L, Manias DA, Dunny GM. 2000. Regulation of intron function: efficient splicing in vivo of a bacterial group II intron requires a functional promoter within the intron. Mol. Microbiol. 37:639-51
    • (2000) Mol. Microbiol , vol.37 , pp. 639-651
    • Zhou, L.1    Manias, D.A.2    Dunny, G.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.