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Volumn 35, Issue 1, 2003, Pages 41-48

LINE-mediated retrotransposition of marked Alu sequences

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; GENOMIC DNA; MESSENGER RNA;

EID: 0041353551     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/ng1223     Document Type: Article
Times cited : (803)

References (49)
  • 1
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E.S. et al. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001).
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 2
    • 0022555861 scopus 로고
    • Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information
    • Weiner, A.M., Deininger, P.L. & Efstratiadis, A. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu. Rev. Biochem. 55, 631-661 (1986).
    • (1986) Annu. Rev. Biochem. , vol.55 , pp. 631-661
    • Weiner, A.M.1    Deininger, P.L.2    Efstratiadis, A.3
  • 3
    • 0001383133 scopus 로고
    • SINEs: Short interspersed repeated DNA elements in higher eucaryotes
    • (eds. Berg, D.E. & Howe, M.M.) (American Society for Microbiology Press, Washington, D.C.)
    • Deininger, P.L. SINEs: short interspersed repeated DNA elements in higher eucaryotes. in Mobile DNA (eds. Berg, D.E. & Howe, M.M.) 619-636 (American Society for Microbiology Press, Washington, D.C., 1989).
    • (1989) Mobile DNA , pp. 619-636
    • Deininger, P.L.1
  • 4
    • 0002075936 scopus 로고    scopus 로고
    • Retrotransposons, endogenous retroviruses, and the evolution of retroelements
    • (eds. Coffin, J.M., Hughes, S.H. & Varmus, H.E.) (Cold Spring Harbor Laboratory Press, Cold Spring Harbor. New York)
    • Boeke, J.D. & Stoye, J.P. Retrotransposons, endogenous retroviruses, and the evolution of retroelements. in Retroviruses (eds. Coffin, J.M., Hughes, S.H. & Varmus, H.E.) 343-435 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor. New York, 1997).
    • (1997) Retroviruses , pp. 343-435
    • Boeke, J.D.1    Stoye, J.P.2
  • 5
    • 0036796354 scopus 로고    scopus 로고
    • Mammalian retroelements
    • Deininger, P.L. & Batzer, M.A. Mammalian retroelements. Genome Res. 12, 1455-1465 (2002).
    • (2002) Genome Res. , vol.12 , pp. 1455-1465
    • Deininger, P.L.1    Batzer, M.A.2
  • 6
    • 0036591885 scopus 로고    scopus 로고
    • SINEs and LINEs: The art of biting the hand that feeds you
    • Weiner, A.M. SINEs and LINEs: the art of biting the hand that feeds you. Curr. Opin. Cell Biol. 14, 343-350 (2002).
    • (2002) Curr. Opin. Cell Biol. , vol.14 , pp. 343-350
    • Weiner, A.M.1
  • 7
    • 0032531815 scopus 로고    scopus 로고
    • Does SINE evolution preclude Alu function?
    • Schmid, C.W. Does SINE evolution preclude Alu function? Nucleic Acids Res. 26, 4541-4550 (1998).
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4541-4550
    • Schmid, C.W.1
  • 8
    • 0034535678 scopus 로고    scopus 로고
    • Alu elements and the human genome
    • Rowold, D.J. & Herrera, R.J. Alu elements and the human genome. Genetica 108, 57-72 (2000).
    • (2000) Genetica , vol.108 , pp. 57-72
    • Rowold, D.J.1    Herrera, R.J.2
  • 9
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity
    • Batzer, M.A. & Deininger, P.L. Alu repeats and human genomic diversity. Nat. Rev. Genet. 3, 370-379 (2002).
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 370-379
    • Batzer, M.A.1    Deininger, P.L.2
  • 10
    • 0019186902 scopus 로고
    • An abundant cytoplasmic 7S RNA is complementary to the dominant interspersed middle repetitive DNA sequence family in the human genome
    • Weiner, A.M. An abundant cytoplasmic 7S RNA is complementary to the dominant interspersed middle repetitive DNA sequence family in the human genome. Cell 22, 209-218 (1980).
    • (1980) Cell , vol.22 , pp. 209-218
    • Weiner, A.M.1
  • 11
    • 0021127698 scopus 로고
    • Alu sequences are processed 7SL RNA genes
    • Ullu, E. & Tschudi, C. Alu sequences are processed 7SL RNA genes. Nature 312, 171-172 (1984).
    • (1984) Nature , vol.312 , pp. 171-172
    • Ullu, E.1    Tschudi, C.2
  • 12
    • 0026541721 scopus 로고
    • Fusion of a free left Alu monomer and a free right Alu monomer at the origin of the Alu family in the primate genomes
    • Quentin, Y. Fusion of a free left Alu monomer and a free right Alu monomer at the origin of the Alu family in the primate genomes. Nucleic Acids Res. 20, 487-493 (1992).
    • (1992) Nucleic Acids Res. , vol.20 , pp. 487-493
    • Quentin, Y.1
  • 13
    • 0025886657 scopus 로고
    • Alu RNA secondary structure consists of two independent 7 SL RNA-like folding units
    • Sinnett, D., Richer, C., Deragon, J.M. & Labuda, D. Alu RNA secondary structure consists of two independent 7 SL RNA-like folding units. J. Biol. Chem. 266, 8675-8678 (1991).
    • (1991) J. Biol. Chem. , vol.266 , pp. 8675-8678
    • Sinnett, D.1    Richer, C.2    Deragon, J.M.3    Labuda, D.4
  • 14
    • 0029858993 scopus 로고    scopus 로고
    • The signal recognition particle and related small cytoplasmic ribonucleoprotein particles
    • Bovia, F. & Strub, K. The signal recognition particle and related small cytoplasmic ribonucleoprotein particles. J. Cell. Sci. 109, 2601-2608 (1996).
    • (1996) J. Cell. Sci. , vol.109 , pp. 2601-2608
    • Bovia, F.1    Strub, K.2
  • 16
    • 0032989268 scopus 로고    scopus 로고
    • An estimated frequency of endogenous insertional mutations in human
    • Kazazian, H.H.J. An estimated frequency of endogenous insertional mutations in human. Nat. Genet. 22, 130 (1999).
    • (1999) Nat. Genet. , vol.22 , pp. 130
    • Kazazian, H.H.J.1
  • 17
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng, Q., Moran, J.V., Kazazian, H.H. & Boeke, J.D. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87, 905-916 (1996).
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian, H.H.3    Boeke, J.D.4
  • 18
    • 0032559061 scopus 로고    scopus 로고
    • Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
    • Cost, G.J. & Boeke, J.D. Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry 37, 18081-18093 (1998).
    • (1998) Biochemistry , vol.37 , pp. 18081-18093
    • Cost, G.J.1    Boeke, J.D.2
  • 19
    • 0036847319 scopus 로고    scopus 로고
    • Human L1 element target-primed reverse transcription in vitro
    • Cost, G.J., Feng, Q., Jacquier, A. & Boeke, J.D. Human L1 element target-primed reverse transcription in vitro. EMBO J. 21, 5899-5910 (2002).
    • (2002) EMBO J. , vol.21 , pp. 5899-5910
    • Cost, G.J.1    Feng, Q.2    Jacquier, A.3    Boeke, J.D.4
  • 20
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • Luan, D.D., Korman, M.H., Jakubczak, J.L. & Eickbush, T.H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72, 595-605 (1993).
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 21
    • 0031055331 scopus 로고    scopus 로고
    • Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
    • Jurka, J. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Proc. Natl. Aca. Sci. USA 94, 1872-1877 (1997).
    • (1997) Proc. Natl. Aca. Sci. USA , vol.94 , pp. 1872-1877
    • Jurka, J.1
  • 22
    • 0034079713 scopus 로고    scopus 로고
    • Human LINE retrotransposons generate processed pseudogenes
    • Esnault, C., Maestre, J. & Heidmann, T. Human LINE retrotransposons generate processed pseudogenes. Nat. Genet. 24, 363-367 (2000).
    • (2000) Nat. Genet. , vol.24 , pp. 363-367
    • Esnault, C.1    Maestre, J.2    Heidmann, T.3
  • 23
    • 0036849412 scopus 로고    scopus 로고
    • LINEs mobilize SINEs in the eel through a shared 3′ sequence
    • Kajikawa, M. & Okada, N. LINEs mobilize SINEs in the eel through a shared 3′ sequence. Cell 111, 433-444 (2002).
    • (2002) Cell , vol.111 , pp. 433-444
    • Kajikawa, M.1    Okada, N.2
  • 24
    • 0036615680 scopus 로고    scopus 로고
    • A Tetrahymena thermophila ribozyme-based indicator gene to detect transposition of marked retroelements in mammalian cells
    • Esnault, C., Casella, J.F. & Heidmann, T. A Tetrahymena thermophila ribozyme-based indicator gene to detect transposition of marked retroelements in mammalian cells. Nucleic Acids Res. 30, e49 (2002).
    • (2002) Nucleic Acids Res. , vol.30
    • Esnault, C.1    Casella, J.F.2    Heidmann, T.3
  • 25
    • 0023424069 scopus 로고
    • Specificity of RNA maturation pathways: RNAs transcribed by RNA polymerase III are not substrates for splicing or polyadenylation
    • Sisodia, S., Sollner-Webb, B. & Cleveland, D. Specificity of RNA maturation pathways: RNAs transcribed by RNA polymerase III are not substrates for splicing or polyadenylation. Mol. Cell. Biol. 7, 3602-3612 (1987).
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 3602-3612
    • Sisodia, S.1    Sollner-Webb, B.2    Cleveland, D.3
  • 26
    • 0025951042 scopus 로고
    • A de novo Alu insertion results in neurofibromatosis type 1
    • Wallace, M.R. et al. A de novo Alu insertion results in neurofibromatosis type 1. Nature 353, 864-866 (1991).
    • (1991) Nature , vol.353 , pp. 864-866
    • Wallace, M.R.1
  • 27
    • 0022414359 scopus 로고
    • Upstream sequences modulate the internal promoter of the human 7SL RNA gene
    • Ullu, E. & Weiner, A.M. Upstream sequences modulate the internal promoter of the human 7SL RNA gene. Nature 318, 371-374 (1985).
    • (1985) Nature , vol.318 , pp. 371-374
    • Ullu, E.1    Weiner, A.M.2
  • 28
    • 0034623016 scopus 로고    scopus 로고
    • Upstream flanking sequences and transcription of SINEs
    • Roy, A.M. et al. Upstream flanking sequences and transcription of SINEs. J. Mol. Biol. 302, 17-25 (2000).
    • (2000) J. Mol. Biol. , vol.302 , pp. 17-25
    • Roy, A.M.1
  • 29
    • 0035144498 scopus 로고    scopus 로고
    • Human L1 retrotransposition: Cis preference versus trans complementation
    • Wei, W. et al. Human L1 retrotransposition: cis preference versus trans complementation. Mol. Cell. Biol. 21, 1429-1439 (2001).
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 1429-1439
    • Wei, W.1
  • 30
    • 0030606320 scopus 로고    scopus 로고
    • High frequency retroposition: In cultured mammalian cells
    • Moran, J.V. et al. High frequency retroposition: in cultured mammalian cells. Cell 87, 917-927 (1996).
    • (1996) Cell , vol.87 , pp. 917-927
    • Moran, J.V.1
  • 31
    • 0025908033 scopus 로고
    • An indicator gene for detection of germline retrotransposition in transgenic Drosophila demonstrates RNA-mediated transposition of the LINE I element
    • Jensen, S. & Heidmann, T. An indicator gene for detection of germline retrotransposition in transgenic Drosophila demonstrates RNA-mediated transposition of the LINE I element. EMBO J. 10, 1927-1937 (1991).
    • (1991) EMBO J. , vol.10 , pp. 1927-1937
    • Jensen, S.1    Heidmann, T.2
  • 33
    • 0036613245 scopus 로고    scopus 로고
    • DNA repair mediated by endonuclease-independent LINE-1 retrotransposition
    • Morrish, T.A. et al. DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nat. Genet. 31, 159-165 (2002).
    • (2002) Nat. Genet. , vol.31 , pp. 159-165
    • Morrish, T.A.1
  • 34
    • 0034235829 scopus 로고    scopus 로고
    • Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3′ end
    • Chaboissier, M.C., Finnegan, D. & Bucheton, A. Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3′ end. Nucleic Acids Res. 28, 2467-2472 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2467-2472
    • Chaboissier, M.C.1    Finnegan, D.2    Bucheton, A.3
  • 35
    • 0036737222 scopus 로고    scopus 로고
    • Active Alu element "A-tails": Size does matter
    • Roy-Engel, A.M. et al. Active Alu element "A-tails": size does matter. Genome Res. 12, 1333-1344 (2002).
    • (2002) Genome Res. , vol.12 , pp. 1333-1344
    • Roy-Engel, A.M.1
  • 36
    • 0035163939 scopus 로고    scopus 로고
    • Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
    • Martin, S.L. & Bushman, F.D. Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol. Cell. Biol. 21, 467-475 (2001).
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 467-475
    • Martin, S.L.1    Bushman, F.D.2
  • 37
    • 0037424493 scopus 로고    scopus 로고
    • High-affinity, non-sequence-specific RNA binding by the open reading frame 1 (ORF1) protein from long interspersed nuclear element 1 (LINE-1)
    • Kolosha, V.O. & Martin, S.L. High-affinity, non-sequence-specific RNA binding by the open reading frame 1 (ORF1) protein from long interspersed nuclear element 1 (LINE-1). J. Biol. Chem. 278, 8112-8117 (2003).
    • (2003) J. Biol. Chem. , vol.278 , pp. 8112-8117
    • Kolosha, V.O.1    Martin, S.L.2
  • 38
    • 0025740894 scopus 로고
    • Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells
    • Martin, S.L. Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells. Mol. Cell. Biol. 11, 4804-4807 (1991).
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 4804-4807
    • Martin, S.L.1
  • 39
    • 0030042251 scopus 로고    scopus 로고
    • Cytolasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA
    • Hohjoh, H. & Singer, M. Cytolasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA. EMBO J. 15, 630-639 (1996).
    • (1996) EMBO J. , vol.15 , pp. 630-639
    • Hohjoh, H.1    Singer, M.2
  • 40
    • 0031027204 scopus 로고    scopus 로고
    • The decline in human Alu retroposition was accompanied by an asymmetric decrease in SRP9/14 binding to dimeric Alu RNA and increased expression of small cytoplasmic Alu RNA
    • Sarrowa, J., Chang, D.Y. & Maraia, R.J. The decline in human Alu retroposition was accompanied by an asymmetric decrease in SRP9/14 binding to dimeric Alu RNA and increased expression of small cytoplasmic Alu RNA. Mol. Cell. Biol. 17, 1144-1151 (1997).
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 1144-1151
    • Sarrowa, J.1    Chang, D.Y.2    Maraia, R.J.3
  • 41
    • 18644380021 scopus 로고    scopus 로고
    • Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles
    • Muddashetty, R. et al. Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles. J. Mol. Biol. 321, 433-445 (2002).
    • (2002) J. Mol. Biol. , vol.321 , pp. 433-445
    • Muddashetty, R.1
  • 43
    • 0031135862 scopus 로고    scopus 로고
    • LINEs and Alu - The poly(A) connection
    • Boeke, J.D. LINEs and Alu - the poly(A) connection. Nat. Genet. 16, 6-7 (1997).
    • (1997) Nat. Genet. , vol.16 , pp. 6-7
    • Boeke, J.D.1
  • 44
    • 0029011245 scopus 로고
    • The SRP9/14 subunit of the signal recognition particle (SRP) is present in more than 20-fold excess over SRP in primate cells and exists primarily free but also in complex with small cytoplasmic Alu RNAs
    • Bovia, F., Fornallaz, M., Leffers, H. & Strub, K. The SRP9/14 subunit of the signal recognition particle (SRP) is present in more than 20-fold excess over SRP in primate cells and exists primarily free but also in complex with small cytoplasmic Alu RNAs. Mol. Biol. Cell. 6, 471-484 (1995).
    • (1995) Mol. Biol. Cell. , vol.6 , pp. 471-484
    • Bovia, F.1    Fornallaz, M.2    Leffers, H.3    Strub, K.4
  • 45
    • 0028901106 scopus 로고
    • A trinucleotide repeat-associated increase in the level of Alu RNA-binding protein occurred during the same period as the major Alu amplification that accompanied anthropoid evolution
    • Chang, D.Y., Sasaki-Tozawa, N., Green, L.K. & Maraia, R.J. A trinucleotide repeat-associated increase in the level of Alu RNA-binding protein occurred during the same period as the major Alu amplification that accompanied anthropoid evolution. Mol. Cell. Biol. 15, 2109-2116 (1995).
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2109-2116
    • Chang, D.Y.1    Sasaki-Tozawa, N.2    Green, L.K.3    Maraia, R.J.4
  • 46
    • 0033958481 scopus 로고    scopus 로고
    • An Alu element from the K18 gene confers position-independent expression in transgenic mice
    • Willoughby, D.A., Vilalta, A. & Oshima, R.G. An Alu element from the K18 gene confers position-independent expression in transgenic mice. J. Biol. Chem. 275, 759-768 (2000).
    • (2000) J. Biol. Chem. , vol.275 , pp. 759-768
    • Willoughby, D.A.1    Vilalta, A.2    Oshima, R.G.3
  • 47
    • 0032816281 scopus 로고    scopus 로고
    • Full-length human L1 insertions retain the capacity for high frequency retrotransposition in cultured cells
    • Kimberland, M.L. et al. Full-length human L1 insertions retain the capacity for high frequency retrotransposition in cultured cells. Hum. Mol. Genet. 8, 1557-1560 (1999).
    • (1999) Hum. Mol. Genet. , vol.8 , pp. 1557-1560
    • Kimberland, M.L.1
  • 48
    • 0025976299 scopus 로고
    • Retrotransposition of a mouse IAP sequence tagged with an indicator gene
    • Heidmann, O. & Heidmann, T. Retrotransposition of a mouse IAP sequence tagged with an indicator gene. Cell 64, 159-170 (1991).
    • (1991) Cell , vol.64 , pp. 159-170
    • Heidmann, O.1    Heidmann, T.2
  • 49
    • 0028854682 scopus 로고
    • The dimerization/packaging sequence is dispensable for both the formation of high-molecular-weight RNA complexes within retroviral particles and the synthesis of proviruses of normal structure
    • Tchénio, T. & Heidmann, T. The dimerization/packaging sequence is dispensable for both the formation of high-molecular-weight RNA complexes within retroviral particles and the synthesis of proviruses of normal structure. J. Virol. 69, 1079-1084 (1995).
    • (1995) J. Virol. , vol.69 , pp. 1079-1084
    • Tchénio, T.1    Heidmann, T.2


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