RNA and protein catalysis in group II intron splicing and mobility reactions using purified components

Biochemistry

Volumn 38, Issue 28, 1999, Pages 9069-9083

  Saldanha, Roland ^a   Chen, Bing ^a,b   Wank, Herbert ^a,c   Matsuura, Manabu ^a   Edwards, Judy ^a   Lambowitz, Alan M ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b BOSTON CHILDREN S HOSPITAL   (United States)

^c Vienna Biocenter   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

ENDONUCLEASE; RNA; RNA DIRECTED DNA POLYMERASE;

ARTICLE; CONFORMATIONAL TRANSITION; ENZYME ACTIVITY; ESCHERICHIA COLI; INTRON; LACTOCOCCUS LACTIS; PRIORITY JOURNAL; PROTEIN DEGRADATION; REVERSE TRANSCRIPTION; RNA SPLICING;

BACTERIAL PROTEINS; CATALYSIS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA TRANSPOSABLE ELEMENTS; ENZYME STABILITY; ESCHERICHIA COLI; HYDROGEN-ION CONCENTRATION; INTRONS; LACTOCOCCUS LACTIS; NUCLEIC ACID CONFORMATION; RECOMBINANT PROTEINS; RIBONUCLEOPROTEINS; RNA SPLICING; RNA, BACTERIAL; RNA-BINDING PROTEINS; RNA-DIRECTED DNA POLYMERASE; SODIUM CHLORIDE; SUBSTRATE SPECIFICITY;

EID: 0033551494     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982799l     Document Type: Article

References (43)

1. Lazowska, J., Meunier, B., and Macadre, C. (1994) EMBO J. 13, 4963-4972.
2. Moran, J. V., Zimmerly, S., Eskes, R., Kennell, J. C., Lambowitz, A. M., Butow, R. A., and Perlman, P. S. (1995) Mol. Cell. Biol. 5, 2828-2838.
3. Mills, D. A., Manias, D. A., McKay, L. L., and Dunny, G. M. (1997) J. Bacteriol. 179, 6107-6111.
4. Lambowitz, A. M., and Belfort, M. (1993) Annu. Rev. Biochem. 62, 587-622.
5. Zimmerly, S., Guo, H., Perlman, P. S., and Lambowitz, A. M. (1995) Cell 82, 545-554.
6. Zimmerly, S., Guo, H., Eskes, R., Yang, J., Perlman, P. S., and Lambowitz, A. M. (1995) Cell 83, 529-538.
7. Yang, J., Zimmerly, S., Perlman, P. S., and Lambowitz, A. M. (1996) Nature 381, 332-335.
8. Eskes, R., Yang, J., Lambowitz, A. M., and Perlman, P. S. (1997) Cell 88, 865-874.
9. Cousineau, B., Smith, D., Lawrence-Cavanagh, S., Mueller, J. E., Yang, J., Mills, D., Manias, D. A., Dunny, G. M., Lambowitz, A. M., and Belfort, M. (1998) Cell 94, 451-462.
10. Carignani, G., Groudinsky, O., Frezza, D., Schiavon, E., Bergantino, E., and Slonimski, P. P. (1983) Cell 35, 733-742.
11. Moran, J. V., Mecklenburg, K. L., Sass, P., Belcher, S. M., Mahnke, D., Lewin, A., and Perlman, P. S. (1994) Nucleic Acids Res. 22, 2057-2064.
12. Mills, D. A., McKay, L. L., and Dunny, G. M. (1996) J. Bacteriol. 178, 3531-3538.
13. Matsuura, M., Saldanha, R., Ma, H., Wank, H., Yang, J., Mohr, G., Cavanagh, S., Dunny, G. M., Belfort, M., and Lambowitz, A. M. (1997) Genes Dev. 11, 2910-2924.
14. Martinez-Abarca, F., Zekri, S., and Toro, N. (1998) Mol. Microbiol. 28, 1295-1306.
15. Lambowitz, A. M., and Perlman, P. S. (1990) Trends Biochem. Sci. 15, 440-444.
16. Ho, Y., Kim, S. J., and Waring, R. D. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 8994-8999.
17. Séraphin, B., Simon, M., Boulet, A., and Faye, G. (1989) Nature 337, 84-87.
18. Wiesenberger, G., Waldherr, M., and Schweyen, R. J. (1992) J. Biol. Chem. 267, 6963-6969.
19. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
20. Jarrell, K. A., Dietrich, R. C., and Perlman, P. S. (1988) Mol. Cell. Biol. 8, 2361-2366.
21. Kennell, J. C., Moran, J. V., Perlman, P. S., Butow, R. A., and Lambowitz, A. M. (1993) Cell 73, 133-146.
22. Guo, Q., Akins, R. A., Garriga, G., and Lambowitz, A. M. (1991) J. Biol. Chem. 266, 1809-1819.
23. Scopes, R. K. (1994) in Protein Purification Principles and Practice (Cantor, C. R., Ed.) 3rd ed., pp 46-68, Springer-Verlag, New York.
24. Wessel, D., and Flügge, U. I. (1984) Anal. Biochem. 138, 141-143.
25. Warburg, O., and Christian, W. (1941 ) Biochem. Z. 310, 384-421.
26. Saldanha, R. J., Patel, S. S., Surendran, R., Lee, J. C., and Lambowitz, A. M. (1995) Biochemistry 34, 1275-1287.
27. Yang, J., and Eickbush, T. H. (1998) Mol. Cell. Biol. 8, 3455-3465.
28. Herschlag, D., and Khosla, M. (1994) Biochemistry 33, 5291-5297.
29. Weeks, K. M., and Cech, T. R. (1995) Biochemistry 34, 7728-7738.
30. Knitt, D. S., and Herschlag, D. (1996) Biochemistry 35, 1560-1570.
31. Chin, K., and Pyle, M. (1995) RNA 1, 391-406.
32. Dème, E., Nolte, A., and Jacquier, A. (1999) Biochemistry 38, 3157-3167.
33. Peebles, C. L., Benatan, E. J., Jarrell, K. A., and Perlman, P. S. (1987) Cold Spring Harbor Symp. Quant. Biol. 52, 223-232.
34. Daniels, D. L., Michels, W. J., Jr., and Pyle, A. M. (1996) J. Mol. Biol. 256, 31-49.
35. Caprara, M. G., Lehnert, V., Lambowitz, A. M., and Westhof, E. (1996) Cell 87, 1135-1145.
36. Weeks, K. M., and Cech, T. R. (1996) Science 271, 345-348.
37. Wang, G. H., Zoulim, F., Leber, E. H., Kitson, J., and Seeger, C. (1994) J. Virol. 68, 8437-8442.
38. Tavis, J. E., and Ganem, D. (1996) J. Virol. 70, 5741-5750.
39. Luan, D. D., Korman, M. H., Jakubczak, J. L., and Eickbush, T. H. (1993) Cell 72, 595-605.
40. Levra-Juillet, E., Boulet, A., Séraphin, B., Simon, M., and Faye, G. (1989) Mol. Gen. Genet. 217, 168-171.
41. Labouesse, M., Dujardin, G., and Slonimski, P. P. (1985) Cell 41, 133-143.
42. Herbert, C. J., Labouesse, M., Dujardin, G., and Slonimski, P. P. (1988) EMBO J. 7, 473-483.
43. Morishima, N., Nakagawa, K., Yamamoto, E., and Shibata, T. (1990) J. Biol. Chem. 265, 15189-15197.