-
1
-
-
17144398064
-
ATR and GADD45α mediate HIV-1 Vpr-induced apoptosis
-
Andersen, J. L., E. S. Zimmerman, J. L. DeHart, S. Murala, O. Ardon, J. Blacken, J. Chen, and V. Planelles. 2005. ATR and GADD45α mediate HIV-1 Vpr-induced apoptosis. Cell Death Differ. 12:326-334.
-
(2005)
Cell Death Differ
, vol.12
, pp. 326-334
-
-
Andersen, J.L.1
Zimmerman, E.S.2
DeHart, J.L.3
Murala, S.4
Ardon, O.5
Blacken, J.6
Chen, J.7
Planelles, V.8
-
2
-
-
22544470259
-
Disruption of mechanisms that prevent rereplication triggers a DNA damage response
-
Archambault, V., A. E. Ikui, B. J. Drapkin, and F. R. Cross. 2005. Disruption of mechanisms that prevent rereplication triggers a DNA damage response. Mol. Cell. Biol. 25:6707-6721.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 6707-6721
-
-
Archambault, V.1
Ikui, A.E.2
Drapkin, B.J.3
Cross, F.R.4
-
3
-
-
13944264254
-
DNA damage sensors ATM, ATR, DNA-PKcs, and PARP-1 are dispensable for human immunodeficiency virus type 1 integration
-
Ariumi, Y., P. Turelli, M. Masutani, and D. Trono. 2005. DNA damage sensors ATM, ATR, DNA-PKcs, and PARP-1 are dispensable for human immunodeficiency virus type 1 integration. J. Virol. 79:2973-2978.
-
(2005)
J. Virol
, vol.79
, pp. 2973-2978
-
-
Ariumi, Y.1
Turelli, P.2
Masutani, M.3
Trono, D.4
-
4
-
-
10844293486
-
Host factors that affect Ty3 retrotransposition in Saccharomyces cerevisiae
-
Aye, M., B. Irwin, N. Beliakova-Bethell, E. Chen, J. Garrus, and S. Sandmeyer. 2004. Host factors that affect Ty3 retrotransposition in Saccharomyces cerevisiae. Genetics 168:1159-1176.
-
(2004)
Genetics
, vol.168
, pp. 1159-1176
-
-
Aye, M.1
Irwin, B.2
Beliakova-Bethell, N.3
Chen, E.4
Garrus, J.5
Sandmeyer, S.6
-
5
-
-
0034469172
-
DNA-Dependent protein kinase is not required for efficient lentivirus integration
-
Baekelandt, V., A. Claeys, P. Cherepanov, E. De Clercq, B. De Strooper, B. Nuttin, and Z. Debyser. 2000. DNA-Dependent protein kinase is not required for efficient lentivirus integration. J. Virol. 74:11278-11285.
-
(2000)
J. Virol
, vol.74
, pp. 11278-11285
-
-
Baekelandt, V.1
Claeys, A.2
Cherepanov, P.3
De Clercq, E.4
De Strooper, B.5
Nuttin, B.6
Debyser, Z.7
-
6
-
-
0345276624
-
Regulation of alternative replication bypass pathways at stalled replication forks and its effects on genome stability: A yeast model
-
Barbour, L., and W. Xiao. 2003. Regulation of alternative replication bypass pathways at stalled replication forks and its effects on genome stability: a yeast model. Mutat. Res. 532:137-155.
-
(2003)
Mutat. Res
, vol.532
, pp. 137-155
-
-
Barbour, L.1
Xiao, W.2
-
7
-
-
33646166525
-
Intracellular restriction factors in mammalian cells - an ancient defense system finds a modern foe
-
Baumann, J. G. 2006. Intracellular restriction factors in mammalian cells - an ancient defense system finds a modern foe. Curr. HIV Res. 4:141-168.
-
(2006)
Curr. HIV Res
, vol.4
, pp. 141-168
-
-
Baumann, J.G.1
-
8
-
-
29844452924
-
Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components
-
Beliakova-Bethell, N., C. Beckham, T. H. Giddings, Jr., M. Winey, R. Parker, and S. Sandmeyer. 2006. Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components. RNA 12:94-101.
-
(2006)
RNA
, vol.12
, pp. 94-101
-
-
Beliakova-Bethell, N.1
Beckham, C.2
Giddings Jr., T.H.3
Winey, M.4
Parker, R.5
Sandmeyer, S.6
-
9
-
-
0041966011
-
-
Bellaoui, M., M. Chang, J. Ou, H. Xu, C. Boone, and G. W. Brown. 2003. Elg1 forms an alternative RFC complex important for DNA replication and genome integrity. EMBO J. 22:4304-4323.
-
Bellaoui, M., M. Chang, J. Ou, H. Xu, C. Boone, and G. W. Brown. 2003. Elg1 forms an alternative RFC complex important for DNA replication and genome integrity. EMBO J. 22:4304-4323.
-
-
-
-
10
-
-
0042191693
-
ELG1, a yeast gene required for genome stability, forms a complex related to replication factor C
-
Ben-Aroya, S., A. Koren, B. Liefshitz, R. Steinlauf, and M. Kupiec. 2003. ELG1, a yeast gene required for genome stability, forms a complex related to replication factor C. Proc. Natl. Acad. Sci. USA 100:9906-9911.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9906-9911
-
-
Ben-Aroya, S.1
Koren, A.2
Liefshitz, B.3
Steinlauf, R.4
Kupiec, M.5
-
11
-
-
0027229202
-
Positive and negative regulatory elements control expression of the yeast retrotransposon Ty3
-
Bilanchone, V. W., J. A. Claypool, P. T. Kinsey, and S. B. Sandmeyer. 1993. Positive and negative regulatory elements control expression of the yeast retrotransposon Ty3. Genetics 134:685-700.
-
(1993)
Genetics
, vol.134
, pp. 685-700
-
-
Bilanchone, V.W.1
Claypool, J.A.2
Kinsey, P.T.3
Sandmeyer, S.B.4
-
12
-
-
0032568799
-
Yeast retrotransposons: Finding a nice quiet neighborhood
-
Boeke, J. D., and S. E. Devine. 1998. Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93:1087-1089.
-
(1998)
Cell
, vol.93
, pp. 1087-1089
-
-
Boeke, J.D.1
Devine, S.E.2
-
13
-
-
0021799352
-
Ty elements transpose through an RNA intermediate
-
Boeke, J. D., D. J. Garfinkel, C. A. Styles, and G. R. Fink. 1985. Ty elements transpose through an RNA intermediate. Cell 40:491-500.
-
(1985)
Cell
, vol.40
, pp. 491-500
-
-
Boeke, J.D.1
Garfinkel, D.J.2
Styles, C.A.3
Fink, G.R.4
-
14
-
-
0036240008
-
Inhibition of reverse transcription in vivo by elevated manganese ion concentration
-
Bolton, E. C., A. S. Mildvan, and J. D. Boeke. 2002. Inhibition of reverse transcription in vivo by elevated manganese ion concentration. Mol. Cell. 9:879-889.
-
(2002)
Mol. Cell
, vol.9
, pp. 879-889
-
-
Bolton, E.C.1
Mildvan, A.S.2
Boeke, J.D.3
-
15
-
-
27144515901
-
Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies
-
Brengues, M., D. Teixeira, and R. Parker. 2005. Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 310:486-489.
-
(2005)
Science
, vol.310
, pp. 486-489
-
-
Brengues, M.1
Teixeira, D.2
Parker, R.3
-
16
-
-
0034928760
-
The Sgs1 helicase of Saccharomyces cerevisiae inhibits retrotransposition of Ty1 multimeric arrays
-
Bryk, M., M. Banerjee, D. Conte, Jr., and M. J. Curcio. 2001. The Sgs1 helicase of Saccharomyces cerevisiae inhibits retrotransposition of Ty1 multimeric arrays. Mol. Cell. Biol. 21:5374-5388.
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 5374-5388
-
-
Bryk, M.1
Banerjee, M.2
Conte Jr., D.3
Curcio, M.J.4
-
17
-
-
0027312490
-
Sites of RNA polymerase III transcription initiation and Ty3 integration at the U6 gene are positioned by the TATA box
-
Chalker, D. L., and S. B. Sandmeyer. 1993. Sites of RNA polymerase III transcription initiation and Ty3 integration at the U6 gene are positioned by the TATA box. Proc. Natl. Acad. Sci. USA 90:4927-4931.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 4927-4931
-
-
Chalker, D.L.1
Sandmeyer, S.B.2
-
18
-
-
0026518979
-
Ty3 integrates within the region of RNA polymerase III transcription initiation
-
Chalker, D. L., and S. B. Sandmeyer. 1992. Ty3 integrates within the region of RNA polymerase III transcription initiation. Genes Dev. 6:117-128.
-
(1992)
Genes Dev
, vol.6
, pp. 117-128
-
-
Chalker, D.L.1
Sandmeyer, S.B.2
-
19
-
-
0025755924
-
Isolation and characterization of the gene encoding yeast debranching enzyme
-
Chapman, K. B., and J. D. Boeke. 1991. Isolation and characterization of the gene encoding yeast debranching enzyme. Cell 65:483-492.
-
(1991)
Cell
, vol.65
, pp. 483-492
-
-
Chapman, K.B.1
Boeke, J.D.2
-
20
-
-
0348230966
-
RNA branching and debranching in the yeast retrovirus-like element Ty1
-
Cheng, Z., and T. M. Menees. 2004. RNA branching and debranching in the yeast retrovirus-like element Ty1. Science 303:240-243.
-
(2004)
Science
, vol.303
, pp. 240-243
-
-
Cheng, Z.1
Menees, T.M.2
-
21
-
-
33750379905
-
High-molecular-mass APOBEC3G complexes restrict Alu retrotransposition
-
Chiu, Y. L., H. E. Witkowska, S. C. Hall, M. Santiago, V. B. Soros, C. Esnault, T. Heidmann, and W. C. Greene. 2006. High-molecular-mass APOBEC3G complexes restrict Alu retrotransposition. Proc. Natl. Acad. Sci. USA 103:15588-15593.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 15588-15593
-
-
Chiu, Y.L.1
Witkowska, H.E.2
Hall, S.C.3
Santiago, M.4
Soros, V.B.5
Esnault, C.6
Heidmann, T.7
Greene, W.C.8
-
22
-
-
0023873366
-
A yeast sigma composite element, TY3, has properties of a retrotransposon
-
Clark, D. J., V. W. Bilanchone, L. J. Haywood, S. L. Dildine, and S. B. Sandmeyer. 1988. A yeast sigma composite element, TY3, has properties of a retrotransposon. J. Biol. Chem. 263:1413-1423.
-
(1988)
J. Biol. Chem
, vol.263
, pp. 1413-1423
-
-
Clark, D.J.1
Bilanchone, V.W.2
Haywood, L.J.3
Dildine, S.L.4
Sandmeyer, S.B.5
-
23
-
-
0037010185
-
RecQ helicases: At the heart of genetic stability
-
Cobb, J. A., L. Bjergbaek, and S. M. Gasser. 2002. RecQ helicases: at the heart of genetic stability. FEBS Lett. 529:43-48.
-
(2002)
FEBS Lett
, vol.529
, pp. 43-48
-
-
Cobb, J.A.1
Bjergbaek, L.2
Gasser, S.M.3
-
24
-
-
3943051423
-
Eukaryotic mRNA decapping
-
Coller, J., and R. Parker. 2004. Eukaryotic mRNA decapping. Annu. Rev. Biochem. 73:861-890.
-
(2004)
Annu. Rev. Biochem
, vol.73
, pp. 861-890
-
-
Coller, J.1
Parker, R.2
-
25
-
-
25144482816
-
General translational repression by activators of mRNA decapping
-
Coller, J., and R. Parker. 2005. General translational repression by activators of mRNA decapping. Cell 122:875-886.
-
(2005)
Cell
, vol.122
, pp. 875-886
-
-
Coller, J.1
Parker, R.2
-
26
-
-
2642650338
-
Posttranslational regulation of Ty1 retrotransposition by mitogen-activated protein kinase Fus3
-
Conte, D., E. Barber, M. Banerjee, D. J. Garfinkel, and M. J. Curcio. 1998. Posttranslational regulation of Ty1 retrotransposition by mitogen-activated protein kinase Fus3. Mol. Cell. Biol. 18:2502-2513.
-
(1998)
Mol. Cell. Biol
, vol.18
, pp. 2502-2513
-
-
Conte, D.1
Barber, E.2
Banerjee, M.3
Garfinkel, D.J.4
Curcio, M.J.5
-
27
-
-
13944284088
-
An evaluation of detection methods for large lariat RNAs
-
Coombes, C. E., and J. D. Boeke. 2005. An evaluation of detection methods for large lariat RNAs. RNA 11:323-331.
-
(2005)
RNA
, vol.11
, pp. 323-331
-
-
Coombes, C.E.1
Boeke, J.D.2
-
28
-
-
0028222894
-
Heterogeneous functional Ty1 elements are abundant in the Saccharomyces cerevisiae genome
-
Curcio, M. J., and D. J. Garfinkel. 1994. Heterogeneous functional Ty1 elements are abundant in the Saccharomyces cerevisiae genome. Genetics 136:1245-1259.
-
(1994)
Genetics
, vol.136
, pp. 1245-1259
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
29
-
-
0026636672
-
Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing
-
Curcio, M. J., and D. J. Garfinkel. 1992. Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing. Mol. Cell. Biol. 12:2813-2825.
-
(1992)
Mol. Cell. Biol
, vol.12
, pp. 2813-2825
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
30
-
-
0026082573
-
Single-step selection for Ty1 element retrotransposition
-
Curcio, M. J., and D. J. Garfinkel. 1991. Single-step selection for Ty1 element retrotransposition. Proc. Natl. Acad. Sci. USA 88:936-940.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 936-940
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
31
-
-
0025128555
-
Ty RNA levels determine the spectrum of retrotransposition events that activate gene expression in Saccharomyces cerevisiae
-
Curcio, M. J., A. M. Hedge, J. D. Boeke, and D. J. Garfinkel. 1990. Ty RNA levels determine the spectrum of retrotransposition events that activate gene expression in Saccharomyces cerevisiae. Mol. Gen. Genet. 220:213-221.
-
(1990)
Mol. Gen. Genet
, vol.220
, pp. 213-221
-
-
Curcio, M.J.1
Hedge, A.M.2
Boeke, J.D.3
Garfinkel, D.J.4
-
32
-
-
0037446871
-
Evidence that the retroviral DNA integration process triggers an ATR-dependent DNA damage response
-
Daniel, R., G. Kao, K. Taganov, J. G. Greger, O. Favorova, G. Merkel, T. J. Yen, R. A. Katz, and A. M. Skalka. 2003. Evidence that the retroviral DNA integration process triggers an ATR-dependent DNA damage response. Proc. Natl. Acad. Sci. USA 100:4778-4783.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 4778-4783
-
-
Daniel, R.1
Kao, G.2
Taganov, K.3
Greger, J.G.4
Favorova, O.5
Merkel, G.6
Yen, T.J.7
Katz, R.A.8
Skalka, A.M.9
-
33
-
-
0035141303
-
Wortmannin potentiates integrase-mediated killing of lymphocytes and reduces the efficiency of stable transduction by retroviruses
-
Daniel, R., R. A. Katz, G. Merkel, J. C. Hittle, T. J. Yen, and A. M. Skalka. 2001. Wortmannin potentiates integrase-mediated killing of lymphocytes and reduces the efficiency of stable transduction by retroviruses. Mol. Cell. Biol. 21:1164-1172.
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 1164-1172
-
-
Daniel, R.1
Katz, R.A.2
Merkel, G.3
Hittle, J.C.4
Yen, T.J.5
Skalka, A.M.6
-
34
-
-
0033597450
-
A role for DNA-PK in retroviral DNA integration
-
Daniel, R., R. A. Katz, and A. M. Skalka. 1999. A role for DNA-PK in retroviral DNA integration. Science 284:644-647.
-
(1999)
Science
, vol.284
, pp. 644-647
-
-
Daniel, R.1
Katz, R.A.2
Skalka, A.M.3
-
35
-
-
13744249589
-
The ataxia telangiectasia-mutated and Rad3-related protein is dispensable for retroviral integration
-
Dehart, J. L., J. L. Andersen, E. S. Zimmerman, O. Ardon, D. S. An, J. Blackett, B. Kim, and V. Planelles. 2005. The ataxia telangiectasia-mutated and Rad3-related protein is dispensable for retroviral integration. J. Virol. 79:1389-1396.
-
(2005)
J. Virol
, vol.79
, pp. 1389-1396
-
-
Dehart, J.L.1
Andersen, J.L.2
Zimmerman, E.S.3
Ardon, O.4
An, D.S.5
Blackett, J.6
Kim, B.7
Planelles, V.8
-
36
-
-
0036796354
-
Mammalian retroelements
-
Deininger, P. L., and M. A. Batzer. 2002. Mammalian retroelements. Genome Res. 12:1455-1465.
-
(2002)
Genome Res
, vol.12
, pp. 1455-1465
-
-
Deininger, P.L.1
Batzer, M.A.2
-
37
-
-
0029879536
-
Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III
-
Devine, S. E., and J. D. Boeke. 1996. Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III. Genes Dev. 10:620-633.
-
(1996)
Genes Dev
, vol.10
, pp. 620-633
-
-
Devine, S.E.1
Boeke, J.D.2
-
38
-
-
0032792105
-
Involvement of DNA end-binding protein Ku in Ty element retrotransposition
-
Downs, J. A., and S. P. Jackson. 1999. Involvement of DNA end-binding protein Ku in Ty element retrotransposition. Mol. Cell. Biol. 19:6260-6268.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 6260-6268
-
-
Downs, J.A.1
Jackson, S.P.2
-
39
-
-
33846818840
-
Yeast Rtt109 promotes genome stability by acetylating histone H3 on lysine 56
-
Driscoll, R., A. Hudson, and S. P. Jackson. 2007. Yeast Rtt109 promotes genome stability by acetylating histone H3 on lysine 56. Science 315:649-652.
-
(2007)
Science
, vol.315
, pp. 649-652
-
-
Driscoll, R.1
Hudson, A.2
Jackson, S.P.3
-
40
-
-
17144384021
-
Inhibition of a yeast LTR retrotransposon by human APOBEC3 cytidine deaminases
-
Dutko, J. A., A. Schafer, A. E. Kenny, B. R. Cullen, and M. J. Curcio. 2005. Inhibition of a yeast LTR retrotransposon by human APOBEC3 cytidine deaminases. Curr. Biol. 15:661-666.
-
(2005)
Curr. Biol
, vol.15
, pp. 661-666
-
-
Dutko, J.A.1
Schafer, A.2
Kenny, A.E.3
Cullen, B.R.4
Curcio, M.J.5
-
41
-
-
0036677405
-
Mec3, Mec1 and Ddc2 are essential components of a telomere checkpoint pathway required for cell cycle arrest during senescence in Saccharomyces cerevisiae
-
Enomoto, S., L. Glowczewski, and J. Berman. 2002. Mec3, Mec1 and Ddc2 are essential components of a telomere checkpoint pathway required for cell cycle arrest during senescence in Saccharomyces cerevisiae. Mol. Biol. Cell 13:2626-2638.
-
(2002)
Mol. Biol. Cell
, vol.13
, pp. 2626-2638
-
-
Enomoto, S.1
Glowczewski, L.2
Berman, J.3
-
43
-
-
33847193509
-
Antiviral protein APOBEC3G localizes to ribonucleoprotein complexes found in P bodies and stress granules
-
Gallois-Montbrun, S., B. Kramer, C. M. Swanson, H. Byers, S. Lynham, M. Ward, and M. H. Malim. 2007. Antiviral protein APOBEC3G localizes to ribonucleoprotein complexes found in P bodies and stress granules. J. Virol. 81:2165-2178.
-
(2007)
J. Virol
, vol.81
, pp. 2165-2178
-
-
Gallois-Montbrun, S.1
Kramer, B.2
Swanson, C.M.3
Byers, H.4
Lynham, S.5
Ward, M.6
Malim, M.H.7
-
44
-
-
0141455106
-
Post-transcriptional cosuppression of Ty1 retrotransposition
-
Garfinkel, D. J., K. Nyswaner, J. Wang, and J. Y. Cho. 2003. Post-transcriptional cosuppression of Ty1 retrotransposition. Genetics 165:83-99.
-
(2003)
Genetics
, vol.165
, pp. 83-99
-
-
Garfinkel, D.J.1
Nyswaner, K.2
Wang, J.3
Cho, J.Y.4
-
45
-
-
33845433818
-
Retrotransposon suicide: Formation of Ty1 circles and autointegration via a central DNA flap
-
Garfinkel, D. J., K. M. Stefanisko, K. M. Nyswaner, S. P. Moore, J. Oh, and S. H. Hughes. 2006. Retrotransposon suicide: formation of Ty1 circles and autointegration via a central DNA flap. J. Virol. 80:11920-11934.
-
(2006)
J. Virol
, vol.80
, pp. 11920-11934
-
-
Garfinkel, D.J.1
Stefanisko, K.M.2
Nyswaner, K.M.3
Moore, S.P.4
Oh, J.5
Hughes, S.H.6
-
46
-
-
0037173615
-
-
Giaever, G, A. M. Chu, L. Ni, C. Connelly, L. Riles, S. Veronneau, S. Dow, A. Lucau-Danila, K. Anderson, B. Andre, A. P. Arkin, A. Astromoff, M. El-Bakkoury, R. Bangham, R. Benito, S. Brachat, S. Campanaro, M. Curtiss, K. Davis, A. Deutschbauer, K. D. Entian, P. Flaherty, F. Foury, D. J. Garfinkel, M. Gerstein, D. Gotte, U. Guldener, J. H. Hegemann, S. Hempel, Z. Herman, D. F. Jaramillo, D. E. Kelly, S. L. Kelly, P. Kotter, D. LaBonte, D. C. Lamb, N. Lan, H. Liang, H. Liao, L. Liu, C. Luo, M. Lussier, R. Mao, P. Menard, S. L. Ooi, J. L. Revuelta, C. J. Roberts, M. Rose, P. Ross-Macdonald, B. Scherens, G. Schimmack, B. Shafer, D. D. Shoemaker, S. Sookhai-Mahadeo, R. K. Storms, J. N. Strathern, G. Valle, M. Voet, G. Volckaert, C. Y. Wang, T. R. Ward, J. Wilhelmy, E. A. Winzeler, Y. Yang, G. Yen, E. Youngman, K. Yu, H. Bussey, J. D. Boeke, M. Snyder, P. Philippsen, R. W. Davis, and M. Johnston. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418
-
Giaever, G., A. M. Chu, L. Ni, C. Connelly, L. Riles, S. Veronneau, S. Dow, A. Lucau-Danila, K. Anderson, B. Andre, A. P. Arkin, A. Astromoff, M. El-Bakkoury, R. Bangham, R. Benito, S. Brachat, S. Campanaro, M. Curtiss, K. Davis, A. Deutschbauer, K. D. Entian, P. Flaherty, F. Foury, D. J. Garfinkel, M. Gerstein, D. Gotte, U. Guldener, J. H. Hegemann, S. Hempel, Z. Herman, D. F. Jaramillo, D. E. Kelly, S. L. Kelly, P. Kotter, D. LaBonte, D. C. Lamb, N. Lan, H. Liang, H. Liao, L. Liu, C. Luo, M. Lussier, R. Mao, P. Menard, S. L. Ooi, J. L. Revuelta, C. J. Roberts, M. Rose, P. Ross-Macdonald, B. Scherens, G. Schimmack, B. Shafer, D. D. Shoemaker, S. Sookhai-Mahadeo, R. K. Storms, J. N. Strathern, G. Valle, M. Voet, G. Volckaert, C. Y. Wang, T. R. Ward, J. Wilhelmy, E. A. Winzeler, Y. Yang, G. Yen, E. Youngman, K. Yu, H. Bussey, J. D. Boeke, M. Snyder, P. Philippsen, R. W. Davis, and M. Johnston. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418:387-391.
-
-
-
-
47
-
-
10944272588
-
Genetic control of retrovirus susceptibility in mammalian cells
-
Goff, S. P. 2004. Genetic control of retrovirus susceptibility in mammalian cells. Annu. Rev. Genet. 38:61-85.
-
(2004)
Annu. Rev. Genet
, vol.38
, pp. 61-85
-
-
Goff, S.P.1
-
48
-
-
33947379083
-
Host factors exploited by retroviruses
-
Goff, S. P. 2007. Host factors exploited by retroviruses. Nat. Rev. Microbiol. 5:253-263.
-
(2007)
Nat. Rev. Microbiol
, vol.5
, pp. 253-263
-
-
Goff, S.P.1
-
49
-
-
10944260126
-
Retrovirus restriction factors
-
Goff, S. P. 2004. Retrovirus restriction factors. Mol. Cell 16:849-859.
-
(2004)
Mol. Cell
, vol.16
, pp. 849-859
-
-
Goff, S.P.1
-
50
-
-
0042208453
-
Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae
-
Griffith, J. L., L. E. Coleman, A. S. Raymond, S. G. Goodson, W. S. Pittard, C. Tsui, and S. E. Devine. 2003. Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae. Genetics 164:867-879.
-
(2003)
Genetics
, vol.164
, pp. 867-879
-
-
Griffith, J.L.1
Coleman, L.E.2
Raymond, A.S.3
Goodson, S.G.4
Pittard, W.S.5
Tsui, C.6
Devine, S.E.7
-
51
-
-
33846796258
-
Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication
-
Han, J., H. Zhou, B. Horazdovsky, K. Zhang, R. M. Xu, and Z. Zhang. 2007. Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication. Science 315:653-655.
-
(2007)
Science
, vol.315
, pp. 653-655
-
-
Han, J.1
Zhou, H.2
Horazdovsky, B.3
Zhang, K.4
Xu, R.M.5
Zhang, Z.6
-
53
-
-
0028788248
-
Plus-strand DNA synthesis of the yeast retrotransposon Ty1 is initiated at two sites, PPT1 next to the 3′ LTR and PPT2 within the pol gene. PPT1 is sufficient for Ty1 transposition
-
Heyman, T., B. Agoutin, S. Friant, F. X. Wilhelm, and M. L. Wilhelm. 1995. Plus-strand DNA synthesis of the yeast retrotransposon Ty1 is initiated at two sites, PPT1 next to the 3′ LTR and PPT2 within the pol gene. PPT1 is sufficient for Ty1 transposition. J. Mol. Biol. 253:291-303.
-
(1995)
J. Mol. Biol
, vol.253
, pp. 291-303
-
-
Heyman, T.1
Agoutin, B.2
Friant, S.3
Wilhelm, F.X.4
Wilhelm, M.L.5
-
54
-
-
0041347893
-
The central PPT of the yeast retrotransposon Ty1 is not essential for transposition
-
Heyman, T., M. Wilhelm, and F. X. Wilhelm. 2003. The central PPT of the yeast retrotransposon Ty1 is not essential for transposition. J. Mol. Biol. 331:315-320.
-
(2003)
J. Mol. Biol
, vol.331
, pp. 315-320
-
-
Heyman, T.1
Wilhelm, M.2
Wilhelm, F.X.3
-
55
-
-
0037341611
-
Short telomeres induce a DNA damage response in Saccharomyces cerevisiae
-
Ijpma, A. S., and C. W. Greider. 2003. Short telomeres induce a DNA damage response in Saccharomyces cerevisiae. Mol. Biol. Cell 14:987-1001.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 987-1001
-
-
Ijpma, A.S.1
Greider, C.W.2
-
56
-
-
19844379399
-
Retroviruses and yeast retrotransposons use overlapping sets of host genes
-
Irwin, B., M. Aye, P. Baldi, N. Beliakova-Bethell, H. Cheng, Y. Dou, W. Liou, and S. Sandmeyer. 2005. Retroviruses and yeast retrotransposons use overlapping sets of host genes. Genome Res. 15:641-654.
-
(2005)
Genome Res
, vol.15
, pp. 641-654
-
-
Irwin, B.1
Aye, M.2
Baldi, P.3
Beliakova-Bethell, N.4
Cheng, H.5
Dou, Y.6
Liou, W.7
Sandmeyer, S.8
-
57
-
-
0348047594
-
The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes
-
Ivessa, A. S., B. A. Lenzmeier, J. B. Bessler, L. K. Goudsouzian, S. L. Schnakenberg, and V. A. Zakian. 2003. The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes. Mol. Cell 12:1525-1536.
-
(2003)
Mol. Cell
, vol.12
, pp. 1525-1536
-
-
Ivessa, A.S.1
Lenzmeier, B.A.2
Bessler, J.B.3
Goudsouzian, L.K.4
Schnakenberg, S.L.5
Zakian, V.A.6
-
58
-
-
0036385935
-
Effect of Ku80 depletion on the preintegrative steps of HIV-1 replication in human cells
-
Jeanson, L., F. Subra, S. Vaganay, M. Hervy, E. Marangoni, J. Bourhis, and J. F. Mouscadet. 2002. Effect of Ku80 depletion on the preintegrative steps of HIV-1 replication in human cells. Virology 300:100-108.
-
(2002)
Virology
, vol.300
, pp. 100-108
-
-
Jeanson, L.1
Subra, F.2
Vaganay, S.3
Hervy, M.4
Marangoni, E.5
Bourhis, J.6
Mouscadet, J.F.7
-
59
-
-
0027192351
-
Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences
-
Ji, H., D. P. Moore, M. A. Blomberg, L. T. Braiterman, D. F. Voytas, G. Natsoulis, and J. D. Boeke. 1993. Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences. Cell 73:1007-1018.
-
(1993)
Cell
, vol.73
, pp. 1007-1018
-
-
Ji, H.1
Moore, D.P.2
Blomberg, M.A.3
Braiterman, L.T.4
Voytas, D.F.5
Natsoulis, G.6
Boeke, J.D.7
-
60
-
-
0141504148
-
-
Kanellis, P., R. Agyei, and D. Durocher. 2003. Elg1 Forms an alternative PCNA-interacting RFC complex required to maintain genome stability. Curr. Biol. 13:1583-1595.
-
Kanellis, P., R. Agyei, and D. Durocher. 2003. Elg1 Forms an alternative PCNA-interacting RFC complex required to maintain genome stability. Curr. Biol. 13:1583-1595.
-
-
-
-
61
-
-
0343776143
-
The yeast retrotransposons Ty1 and Ty3 require the RNA lariat debranching enzyme, Dbr1p, for efficient accumulation of reverse transcripts
-
Karst, S. M., M. L. Rutz, and T. M. Menees. 2000. The yeast retrotransposons Ty1 and Ty3 require the RNA lariat debranching enzyme, Dbr1p, for efficient accumulation of reverse transcripts. Biochem. Biophys. Res. Commun. 268:112-117.
-
(2000)
Biochem. Biophys. Res. Commun
, vol.268
, pp. 112-117
-
-
Karst, S.M.1
Rutz, M.L.2
Menees, T.M.3
-
62
-
-
18844375357
-
Abrogation of the Chk1-Pds1 checkpoint leads to tolerance of persistent single-strand breaks in Saccharomyces cerevisiae
-
Karumbati, A. S., and T. E. Wilson. 2005. Abrogation of the Chk1-Pds1 checkpoint leads to tolerance of persistent single-strand breaks in Saccharomyces cerevisiae. Genetics 169:1833-1844.
-
(2005)
Genetics
, vol.169
, pp. 1833-1844
-
-
Karumbati, A.S.1
Wilson, T.E.2
-
63
-
-
1242297006
-
Emergence of vertebrate retroviruses and envelope capture
-
Kim, F. J., J. L. Battini, N. Manel, and M. Sitbon. 2004. Emergence of vertebrate retroviruses and envelope capture. Virology 318:183-191.
-
(2004)
Virology
, vol.318
, pp. 183-191
-
-
Kim, F.J.1
Battini, J.L.2
Manel, N.3
Sitbon, M.4
-
64
-
-
0028817477
-
Ty3 transposes in mating populations of yeast: A novel transposition assay for Ty3
-
Kinsey, P. T., and S. B. Sandmeyer. 1995. Ty3 transposes in mating populations of yeast: a novel transposition assay for Ty3. Genetics 139:81-94.
-
(1995)
Genetics
, vol.139
, pp. 81-94
-
-
Kinsey, P.T.1
Sandmeyer, S.B.2
-
65
-
-
0036273705
-
Insertional mutagenesis: Transposon-insertion libraries as mutagens in yeast
-
Kumar, A., S. Vidan, and M. Snyder. 2002. Insertional mutagenesis: transposon-insertion libraries as mutagens in yeast. Methods Enzymol. 350:219-229.
-
(2002)
Methods Enzymol
, vol.350
, pp. 219-229
-
-
Kumar, A.1
Vidan, S.2
Snyder, M.3
-
66
-
-
29744464493
-
Activation of the ATR pathway by human immunodeficiency virus type 1 Vpr involves its direct binding to chromatin in vivo
-
Lai, M., E. S. Zimmerman, V. Planelles, and J. Chen. 2005. Activation of the ATR pathway by human immunodeficiency virus type 1 Vpr involves its direct binding to chromatin in vivo. J. Virol. 79:15443- 15451.
-
(2005)
J. Virol
, vol.79
, pp. 15443-15451
-
-
Lai, M.1
Zimmerman, E.S.2
Planelles, V.3
Chen, J.4
-
67
-
-
4444363150
-
Suppression of retroviral infection by the RAD52 DNA repair protein
-
Lau, A., R. Kanaar, S. P. Jackson, and M. J. O'Connor. 2004. Suppression of retroviral infection by the RAD52 DNA repair protein. EMBO J. 23:3421-3429.
-
(2004)
EMBO J
, vol.23
, pp. 3421-3429
-
-
Lau, A.1
Kanaar, R.2
Jackson, S.P.3
O'Connor, M.J.4
-
68
-
-
18344388668
-
Suppression of HIV-1 infection by a small molecule inhibitor of the ATM kinase
-
Lau, A., K. M. Swinbank, P. S. Ahmed, D. L. Taylor, S. P. Jackson, G. C. Smith, and M. J. O'Connor. 2005. Suppression of HIV-1 infection by a small molecule inhibitor of the ATM kinase. Nat. Cell Biol. 7:493-500.
-
(2005)
Nat. Cell Biol
, vol.7
, pp. 493-500
-
-
Lau, A.1
Swinbank, K.M.2
Ahmed, P.S.3
Taylor, D.L.4
Jackson, S.P.5
Smith, G.C.6
O'Connor, M.J.7
-
69
-
-
0034100566
-
Nucleotide excision repair/TFIIH helicases RAD3 and SSL2 inhibit short-sequence recombination and Ty1 retrotransposition by similar mechanisms
-
Lee, B. S., L. Bi, D. J. Garfinkel, and A. M. Bailis. 2000. Nucleotide excision repair/TFIIH helicases RAD3 and SSL2 inhibit short-sequence recombination and Ty1 retrotransposition by similar mechanisms. Mol. Cell. Biol. 20:2436-2445.
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 2436-2445
-
-
Lee, B.S.1
Bi, L.2
Garfinkel, D.J.3
Bailis, A.M.4
-
70
-
-
0031953262
-
Posttranslational inhibition of Ty1 retrotransposition by nucleotide excision repair transcription factor TFIIH subunits Ss12p and Rad3p
-
Lee, B. S., C. P. Lichtenstein, B. Faiola, L. A. Rinckel, W. Wysock, M. J. Curcio, and D. J. Garfinkel. 1998. Posttranslational inhibition of Ty1 retrotransposition by nucleotide excision repair transcription factor TFIIH subunits Ss12p and Rad3p. Genetics 148:1743-1761.
-
(1998)
Genetics
, vol.148
, pp. 1743-1761
-
-
Lee, B.S.1
Lichtenstein, C.P.2
Faiola, B.3
Rinckel, L.A.4
Wysock, W.5
Curcio, M.J.6
Garfinkel, D.J.7
-
71
-
-
18944382213
-
Happy together: The life and times of Ty retrotransposons and their hosts
-
Lesage, P., and A. L. Todeschini. 2005. Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet. Genome Res. 110:70-90.
-
(2005)
Cytogenet. Genome Res
, vol.110
, pp. 70-90
-
-
Lesage, P.1
Todeschini, A.L.2
-
72
-
-
33646943507
-
Effect of DNA repair protein Rad18 on viral infection
-
Lloyd, A. G., S. Tateishi, P. D. Bieniasz, M. A. Muesing, M. Yamaizumi, and L. C. Mulder. 2006. Effect of DNA repair protein Rad18 on viral infection. PLoS Pathog. 2:e40.
-
(2006)
PLoS Pathog
, vol.2
-
-
Lloyd, A.G.1
Tateishi, S.2
Bieniasz, P.D.3
Muesing, M.A.4
Yamaizumi, M.5
Mulder, L.C.6
-
73
-
-
13944259332
-
Genetic network interactions among replication, repair and nuclear pore deficiencies in yeast
-
Loeillet, S., B. Palancade, M. Cartron, A. Thierry, G. F. Richard, B. Dujon, V. Doye, and A. Nicolas. 2005. Genetic network interactions among replication, repair and nuclear pore deficiencies in yeast. DNA Repair 4:459-468.
-
(2005)
DNA Repair
, vol.4
, pp. 459-468
-
-
Loeillet, S.1
Palancade, B.2
Cartron, M.3
Thierry, A.4
Richard, G.F.5
Dujon, B.6
Doye, V.7
Nicolas, A.8
-
74
-
-
33646073448
-
The cullin Rtt101p promotes replication fork progression through damaged DNA and natural pause sites
-
Luke, B., G. Versini, M. Jaquenoud, I. W. Zaidi, T. Kurz, L. Pintard, P. Pasero, and M. Peter. 2006. The cullin Rtt101p promotes replication fork progression through damaged DNA and natural pause sites. Curr. Biol. 16:786-792.
-
(2006)
Curr. Biol
, vol.16
, pp. 786-792
-
-
Luke, B.1
Versini, G.2
Jaquenoud, M.3
Zaidi, I.W.4
Kurz, T.5
Pintard, L.6
Pasero, P.7
Peter, M.8
-
75
-
-
7644226721
-
Ty1 mobilizes subtelomeric Y′ elements in telomerase-negative Saccharomyces cerevisiae survivors
-
Maxwell, P. H., C. Coombes, A. E. Kenny, J. F. Lawler, J. D. Boeke, and M. J. Curcio. 2004. Ty1 mobilizes subtelomeric Y′ elements in telomerase-negative Saccharomyces cerevisiae survivors. Mol. Cell. Biol. 24:9887-9898.
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 9887-9898
-
-
Maxwell, P.H.1
Coombes, C.2
Kenny, A.E.3
Lawler, J.F.4
Boeke, J.D.5
Curcio, M.J.6
-
76
-
-
7444272009
-
Messenger RNA turnover in eukaryotes: Pathways and enzymes
-
Meyer, S., C. Temme, and E. Wahle. 2004. Messenger RNA turnover in eukaryotes: pathways and enzymes. Crit. Rev. Biochem. Mol. Biol. 39:197-216.
-
(2004)
Crit. Rev. Biochem. Mol. Biol
, vol.39
, pp. 197-216
-
-
Meyer, S.1
Temme, C.2
Wahle, E.3
-
77
-
-
0029970701
-
Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks
-
Moore, J. K., and J. E. Haber. 1996. Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks. Nature 383:644-646.
-
(1996)
Nature
, vol.383
, pp. 644-646
-
-
Moore, J.K.1
Haber, J.E.2
-
78
-
-
0037178886
-
Interaction of HIV-1 integrase with DNA repair protein hRad18
-
Mulder, L. C., L. A. Chakrabarti, and M. A. Muesing. 2002. Interaction of HIV-1 integrase with DNA repair protein hRad18. J. Biol. Chem. 277:27489-27493.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 27489-27493
-
-
Mulder, L.C.1
Chakrabarti, L.A.2
Muesing, M.A.3
-
79
-
-
0024746178
-
Ty1 transposition in Saccharomyces cerevisiae is nonrandom
-
Natsoulis, G., W. Thomas, M. C. Roghmann, F. Winston, and J. D. Boeke. 1989. Ty1 transposition in Saccharomyces cerevisiae is nonrandom. Genetics 123:269-279.
-
(1989)
Genetics
, vol.123
, pp. 269-279
-
-
Natsoulis, G.1
Thomas, W.2
Roghmann, M.C.3
Winston, F.4
Boeke, J.D.5
-
80
-
-
17444420810
-
Inhibition of HIV-1 replication by caffeine and caffeine-related methylxanthines
-
Nunnari, G., E. Argyris, J. Fang, K. E. Mehlman, R. J. Pomerantz, and R. Daniel. 2005. Inhibition of HIV-1 replication by caffeine and caffeine-related methylxanthines. Virology 335:177-184.
-
(2005)
Virology
, vol.335
, pp. 177-184
-
-
Nunnari, G.1
Argyris, E.2
Fang, J.3
Mehlman, K.E.4
Pomerantz, R.J.5
Daniel, R.6
-
81
-
-
33644778778
-
A DNA integrity network in the yeast Saccharomyces cerevisiae
-
Pan, X., P. Ye, D. S. Yuan, X. Wang, J. S. Bader, and J. D. Boeke. 2006. A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 124:1069-1081.
-
(2006)
Cell
, vol.124
, pp. 1069-1081
-
-
Pan, X.1
Ye, P.2
Yuan, D.S.3
Wang, X.4
Bader, J.S.5
Boeke, J.D.6
-
82
-
-
0027317654
-
Biochemical and electron microscope analyses of the DNA reverse transcripts present in the virus-like particles of the yeast transposon Ty1. Identification of a second origin of Ty1 DNA plus strand synthesis
-
Pochart, P., B. Agoutin, S. Rousset, R. Chanel, V. Doroszkiewicz, and T. Heyman. 1993. Biochemical and electron microscope analyses of the DNA reverse transcripts present in the virus-like particles of the yeast transposon Ty1. Identification of a second origin of Ty1 DNA plus strand synthesis. Nucleic Acids Res. 21:3513-3520.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3513-3520
-
-
Pochart, P.1
Agoutin, B.2
Rousset, S.3
Chanel, R.4
Doroszkiewicz, V.5
Heyman, T.6
-
83
-
-
0035022013
-
Fidelity of mitotic double-strand-break repair in Saccharomyces cerevisiae. A role for SAE2/COM1
-
Rattray, A. J., C. B. McGill, B. K. Shafer, and J. N. Strathern. 2001. Fidelity of mitotic double-strand-break repair in Saccharomyces cerevisiae. A role for SAE2/COM1. Genetics 158:109-122.
-
(2001)
Genetics
, vol.158
, pp. 109-122
-
-
Rattray, A.J.1
McGill, C.B.2
Shafer, B.K.3
Strathern, J.N.4
-
84
-
-
0033972502
-
The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition
-
Rattray, A. J., B. K. Shafer, and D. J. Garfinkel. 2000. The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition. Genetics 154:543-556.
-
(2000)
Genetics
, vol.154
, pp. 543-556
-
-
Rattray, A.J.1
Shafer, B.K.2
Garfinkel, D.J.3
-
85
-
-
0037830710
-
Activation of the ATR-mediated DNA damage response by the HIV-1 viral protein R
-
Roshal, M., B. Kim, Y. Zhu, P. Nghiem, and V. Planelles. 2003. Activation of the ATR-mediated DNA damage response by the HIV-1 viral protein R. J. Biol. Chem. 278:25879-25886.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 25879-25886
-
-
Roshal, M.1
Kim, B.2
Zhu, Y.3
Nghiem, P.4
Planelles, V.5
-
86
-
-
0242409126
-
Relationship between RNA lariat debranching and Ty1 element retrotransposition
-
Salem, L. A., C. L. Boucher, and T. M. Menees. 2003. Relationship between RNA lariat debranching and Ty1 element retrotransposition. J. Virol. 77:12795-12806.
-
(2003)
J. Virol
, vol.77
, pp. 12795-12806
-
-
Salem, L.A.1
Boucher, C.L.2
Menees, T.M.3
-
87
-
-
85118520241
-
Ty3, a position specific, gypsy-like element in Saccharomyces cerevisiae
-
N. Craig, R. Craigie, M. Gellert, and A. Lambowitz ed, ASM Press, Washington, DC
-
Sandmeyer, S. B., M. Aye, and T. Menees. 2002. Ty3, a position specific, gypsy-like element in Saccharomyces cerevisiae, p. 663-683. In N. Craig, R. Craigie, M. Gellert, and A. Lambowitz (ed.), Mobile DNA II. ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 663-683
-
-
Sandmeyer, S.B.1
Aye, M.2
Menees, T.3
-
88
-
-
33845227935
-
Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis
-
Sawyer, S. L., and H. S. Malik. 2006. Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis. Proc. Natl. Acad. Sci. USA 103:17614-17619.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 17614-17619
-
-
Sawyer, S.L.1
Malik, H.S.2
-
89
-
-
33846023720
-
Rtt109 is required for proper H3K56 acetylation: A chromatin mark associated with the elongating RNA polymerase II
-
Schneider, J., P. Bajwa, F. C. Johnson, S. R. Bhaumik, and A. Shilatifard. 2006. Rtt109 is required for proper H3K56 acetylation: a chromatin mark associated with the elongating RNA polymerase II. J. Biol. Chem. 281:37270-37274.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 37270-37274
-
-
Schneider, J.1
Bajwa, P.2
Johnson, F.C.3
Bhaumik, S.R.4
Shilatifard, A.5
-
90
-
-
0035692614
-
Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance
-
Scholes, D. T., M. Banerjee, B. Bowen, and M. J. Curcio. 2001. Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance. Genetics 159:1449-1465.
-
(2001)
Genetics
, vol.159
, pp. 1449-1465
-
-
Scholes, D.T.1
Banerjee, M.2
Bowen, B.3
Curcio, M.J.4
-
91
-
-
0347364634
-
Activation of a LTR-retrotransposon by telomere erosion
-
Scholes, D. T., A. E. Kenny, E. R. Gamache, Z. Mou, and M. J. Curcio. 2003. Activation of a LTR-retrotransposon by telomere erosion. Proc. Natl. Acad. Sci. USA 100.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
-
-
Scholes, D.T.1
Kenny, A.E.2
Gamache, E.R.3
Mou, Z.4
Curcio, M.J.5
-
92
-
-
22244448696
-
APOBEC3G hypermutates genomic DNA and inhibits Ty1 retrotransposition in yeast
-
Schumacher, A. J., D. V. Nissley, and R. S. Harris. 2005. APOBEC3G hypermutates genomic DNA and inhibits Ty1 retrotransposition in yeast. Proc. Natl. Acad. Sci. USA 102:9854-9859.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 9854-9859
-
-
Schumacher, A.J.1
Nissley, D.V.2
Harris, R.S.3
-
93
-
-
0033773044
-
mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E
-
Schwartz, D. C., and R. Parker. 2000. mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E. Mol. Cell. Biol. 20:7933-7942.
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 7933-7942
-
-
Schwartz, D.C.1
Parker, R.2
-
94
-
-
0032778953
-
Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae
-
Schwartz, D. C., and R. Parker. 1999. Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 19:5247-5256.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 5247-5256
-
-
Schwartz, D.C.1
Parker, R.2
-
95
-
-
33745432615
-
Sbp1p affects translational repression and decapping in Saccharomyces cerevisiae
-
Segal, S. P., T. Dunckley, and R. Parker. 2006. Sbp1p affects translational repression and decapping in Saccharomyces cerevisiae. Mol. Cell. Biol. 26:5120-5130.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 5120-5130
-
-
Segal, S.P.1
Dunckley, T.2
Parker, R.3
-
96
-
-
0037968357
-
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
-
Sheth, U., and R. Parker. 2003. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300:805-808.
-
(2003)
Science
, vol.300
, pp. 805-808
-
-
Sheth, U.1
Parker, R.2
-
97
-
-
0027992609
-
An env-like protein encoded by a Drosophila retroelement: Evidence that gypsy is an infectious retrovirus
-
Song, S. U., T. Gerasimova, M. Kurkulos, J. D. Boeke, and V. G. Corces. 1994. An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. Genes Dev. 8:2046-2057.
-
(1994)
Genes Dev
, vol.8
, pp. 2046-2057
-
-
Song, S.U.1
Gerasimova, T.2
Kurkulos, M.3
Boeke, J.D.4
Corces, V.G.5
-
98
-
-
0141844660
-
AIP1/ALIX is a binding partner for HIV-1 p6 and EIAV p9 functioning in virus budding
-
Strack, B., A. Calistri, S. Craig, E. Popova, and H. G. Gottlinger. 2003. AIP1/ALIX is a binding partner for HIV-1 p6 and EIAV p9 functioning in virus budding. Cell 114:689-699.
-
(2003)
Cell
, vol.114
, pp. 689-699
-
-
Strack, B.1
Calistri, A.2
Craig, S.3
Popova, E.4
Gottlinger, H.G.5
-
99
-
-
0037277530
-
The Rad27 (Fen-1) nuclease inhibits Ty1 mobility in Saccharomyces cerevisiae
-
Sundararajan, A., B. S. Lee, and D. J. Garfinkel. 2003. The Rad27 (Fen-1) nuclease inhibits Ty1 mobility in Saccharomyces cerevisiae. Genetics 163:55-67.
-
(2003)
Genetics
, vol.163
, pp. 55-67
-
-
Sundararajan, A.1
Lee, B.S.2
Garfinkel, D.J.3
-
100
-
-
31544471786
-
HIV-1 Vpr induces DNA double-strand breaks
-
Tachiwana, H., M. Shimura, C. Nakai-Murakami, K. Tokunaga, Y. Takizawa, T. Sata, H. Kurumizaka, and Y. Ishizaka. 2006. HIV-1 Vpr induces DNA double-strand breaks. Cancer Res. 66:627-631.
-
(2006)
Cancer Res
, vol.66
, pp. 627-631
-
-
Tachiwana, H.1
Shimura, M.2
Nakai-Murakami, C.3
Tokunaga, K.4
Takizawa, Y.5
Sata, T.6
Kurumizaka, H.7
Ishizaka, Y.8
-
101
-
-
15444379718
-
Processing bodies require RNA for assembly and contain nontranslating mRNAs
-
Teixeira, D., U. Sheth, M. A. Valencia-Sanchez, M. Brengues, and R. Parker. 2005. Processing bodies require RNA for assembly and contain nontranslating mRNAs. RNA 11:371-382.
-
(2005)
RNA
, vol.11
, pp. 371-382
-
-
Teixeira, D.1
Sheth, U.2
Valencia-Sanchez, M.A.3
Brengues, M.4
Parker, R.5
-
102
-
-
0029975794
-
Retrotransposon reverse-transcriptase-mediated repair of chromosomal breaks
-
Teng, S. C., B. Kim, and A. Gabriel. 1996. Retrotransposon reverse-transcriptase-mediated repair of chromosomal breaks. Nature 383:641-644.
-
(1996)
Nature
, vol.383
, pp. 641-644
-
-
Teng, S.C.1
Kim, B.2
Gabriel, A.3
-
103
-
-
10744230485
-
-
Tong, A. H., G. Lesage, G. D. Bader, H. Ding, H. Xu, X. Xin, J. Young, G. F. Berriz, R. L. Brost, M. Chang, Y. Chen, X. Cheng, G. Chua, H. Friesen, D. S. Goldberg, J. Haynes, C. Humphries, G. He, S. Hussein, L. Ke, N. Krogan, Z. Li, J. N. Levinson, H. Lu, P. Menard, C. Munyana, A. B. Parsons, O. Ryan, R. Tonikian, T. Roberts, A. M. Sdicu, J. Shapiro, B. Sheikh, B. Suter, S. L. Wong, L. V. Zhang, H. Zhu, C. G. Burd, S. Munro, C. Sander, J. Rine, J. Greenblatt, M. Peter, A. Bretscher, G. Bell, F. P. Roth, G. W. Brown, B. Andrews, H. Bussey, and C. Boone. 2004. Global mapping of the yeast genetic interaction network. Science 303:808-813.
-
Tong, A. H., G. Lesage, G. D. Bader, H. Ding, H. Xu, X. Xin, J. Young, G. F. Berriz, R. L. Brost, M. Chang, Y. Chen, X. Cheng, G. Chua, H. Friesen, D. S. Goldberg, J. Haynes, C. Humphries, G. He, S. Hussein, L. Ke, N. Krogan, Z. Li, J. N. Levinson, H. Lu, P. Menard, C. Munyana, A. B. Parsons, O. Ryan, R. Tonikian, T. Roberts, A. M. Sdicu, J. Shapiro, B. Sheikh, B. Suter, S. L. Wong, L. V. Zhang, H. Zhu, C. G. Burd, S. Munro, C. Sander, J. Rine, J. Greenblatt, M. Peter, A. Bretscher, G. Bell, F. P. Roth, G. W. Brown, B. Andrews, H. Bussey, and C. Boone. 2004. Global mapping of the yeast genetic interaction network. Science 303:808-813.
-
-
-
-
104
-
-
33847412826
-
Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes
-
Tsubota, T., C. E. Berndsen, J. A. Erkmann, C. L. Smith, L. Yang, M. A. Freitas, J. M. Denu, and P. D. Kaufman. 2007. Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes. Mol. Cell 25:703-712.
-
(2007)
Mol. Cell
, vol.25
, pp. 703-712
-
-
Tsubota, T.1
Berndsen, C.E.2
Erkmann, J.A.3
Smith, C.L.4
Yang, L.5
Freitas, M.A.6
Denu, J.M.7
Kaufman, P.D.8
-
105
-
-
0023153940
-
The yeast repeated element sigma contains a hormone-inducible promoter
-
Van Arsdell, S. W., G. L. Stetler, and J. Thorner. 1987. The yeast repeated element sigma contains a hormone-inducible promoter. Mol. Cell. Biol. 7:749-759.
-
(1987)
Mol. Cell. Biol
, vol.7
, pp. 749-759
-
-
Van Arsdell, S.W.1
Stetler, G.L.2
Thorner, J.3
-
106
-
-
85118513711
-
Ty1 and Ty5 of Saccharomyces cerevisiae
-
N. Craig, R. Craigie, M. Gellert, and A. Lambowitz ed, ASM Press, Washington, DC
-
Voytas, D. F., and J. D. Boeke. 2002. Ty1 and Ty5 of Saccharomyces cerevisiae, p. 631-662. In N. Craig, R. Craigie, M. Gellert, and A. Lambowitz (ed.), Mobile DNA II. ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 631-662
-
-
Voytas, D.F.1
Boeke, J.D.2
-
107
-
-
33646924568
-
Human retroviral host restriction factors APOBEC3G and APOBEC3F localize to mRNA processing bodies
-
Wichroski, M. J., G. B. Robb, and T. M. Rana. 2006. Human retroviral host restriction factors APOBEC3G and APOBEC3F localize to mRNA processing bodies. PLoS Pathog. 2:e41.
-
(2006)
PLoS Pathog
, vol.2
-
-
Wichroski, M.J.1
Robb, G.B.2
Rana, T.M.3
-
108
-
-
0024368680
-
Analysis of yeast retrotransposon Ty insertions at the CAN1 locus
-
Wilke, C. M., S. H. Heidler, N. Brown, and S. W. Liebman. 1989. Analysis of yeast retrotransposon Ty insertions at the CAN1 locus. Genetics 123:655-665.
-
(1989)
Genetics
, vol.123
, pp. 655-665
-
-
Wilke, C.M.1
Heidler, S.H.2
Brown, N.3
Liebman, S.W.4
-
109
-
-
0033529707
-
-
Winzeler, E. A, D. D. Shoemaker, A. Astromoff, H. Liang, K. Anderson, B. Andre, R. Bangham, R. Benito, J. D. Boeke, H. Bussey, A. M. Chu, C. Connelly, K. Davis, F. Dietrich, S. W. Dow, M. El Bakkoury, F. Foury, S. H. Friend, E. Gentalen, G. Giaever, J. H. Hegemann, T. Jones, M. Laub, H. Liao, N. Liebundguth, D. J. Lockhart, A. Lucau-Danila, M. Lussier, N. M'Rahet, P. Menard, M. Mittman, C. Pai, C. Rebischung, J. L. Revuelta, L. Riles, C. J. Roberts, P. Ross-MacDonald, B. Scherens, M. Snyder, S. Sookhai-Mahadeo, R. K. Storms, S. Veronneau, M. Voet, G. Volckaert, T. R. Ward, R. Wysocki, G. S. Yen, K. Yu, K. Zimmermann, P. Philipssen, M. Johnston, and R. W. Davis. 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285:901-906
-
Winzeler, E. A., D. D. Shoemaker, A. Astromoff, H. Liang, K. Anderson, B. Andre, R. Bangham, R. Benito, J. D. Boeke, H. Bussey, A. M. Chu, C. Connelly, K. Davis, F. Dietrich, S. W. Dow, M. El Bakkoury, F. Foury, S. H. Friend, E. Gentalen, G. Giaever, J. H. Hegemann, T. Jones, M. Laub, H. Liao, N. Liebundguth, D. J. Lockhart, A. Lucau-Danila, M. Lussier, N. M'Rahet, P. Menard, M. Mittman, C. Pai, C. Rebischung, J. L. Revuelta, L. Riles, C. J. Roberts, P. Ross-MacDonald, B. Scherens, M. Snyder, S. Sookhai-Mahadeo, R. K. Storms, S. Veronneau, M. Voet, G. Volckaert, T. R. Ward, R. Wysocki, G. S. Yen, K. Yu, K. Zimmermann, P. Philipssen, M. Johnston, and R. W. Davis. 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285:901-906.
-
-
-
-
110
-
-
27744505077
-
DBR1 siRNA inhibition of HIV-1 replication
-
Ye, Y., J. De Leon, N. Yokoyama, Y. Naidu, and D. Camerini. 2005. DBR1 siRNA inhibition of HIV-1 replication. Retrovirology 2:63.
-
(2005)
Retrovirology
, vol.2
, pp. 63
-
-
Ye, Y.1
De Leon, J.2
Yokoyama, N.3
Naidu, Y.4
Camerini, D.5
-
111
-
-
33645217803
-
The DNA repair genes XPB and XPD defend cells from retroviral infection
-
Yoder, K., A. Sarasin, K. Kraemer, M. McIlhatton, F. Bushman, and R. Fishel. 2006. The DNA repair genes XPB and XPD defend cells from retroviral infection. Proc. Natl. Acad. Sci. USA 103:4622-4627.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 4622-4627
-
-
Yoder, K.1
Sarasin, A.2
Kraemer, K.3
McIlhatton, M.4
Bushman, F.5
Fishel, R.6
-
112
-
-
23844480660
-
Human immunodeficiency virus type 1 Vpr-dependent cell cycle arrest through a mitogen-activated protein kinase signal transduction pathway
-
Yoshizuka, N., Y. Yoshizuka-Chadani, V. Krishnan, and S. L. Zeichner. 2005. Human immunodeficiency virus type 1 Vpr-dependent cell cycle arrest through a mitogen-activated protein kinase signal transduction pathway. J. Virol. 79:11366-11381.
-
(2005)
J. Virol
, vol.79
, pp. 11366-11381
-
-
Yoshizuka, N.1
Yoshizuka-Chadani, Y.2
Krishnan, V.3
Zeichner, S.L.4
-
114
-
-
6344227897
-
2 arrest requires Rad17 and Hus1 and induces nuclear BRCA1 and gamma-H2AX focus formation
-
2 arrest requires Rad17 and Hus1 and induces nuclear BRCA1 and gamma-H2AX focus formation. Mol. Cell. Biol. 24:9286-9294.
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 9286-9294
-
-
Zimmerman, E.S.1
Chen, J.2
Andersen, J.L.3
Ardon, O.4
Dehart, J.L.5
Blackett, J.6
Choudhary, S.K.7
Camerini, D.8
Nghiem, P.9
Planelles, V.10
|