-
1
-
-
85158033913
-
Mobile introns: Pathways and proteins
-
ed. N.L. Craig et al., ASM Press, Washington, DC
-
Belfort, M., Derbyshire, V., Parker, M.M., Cousineau, B., and Lambowitz, A.M. 2002. Mobile introns: Pathways and proteins. In Mobile DNA II (ed. N.L. Craig et al.), pp. 761-783. ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 761-783
-
-
Belfort, M.1
Derbyshire, V.2
Parker, M.M.3
Cousineau, B.4
Lambowitz, A.M.5
-
2
-
-
0036233402
-
Escherichia coli DNA polymerase III can replicate efficiently past a T-T cis-syn cyclobutane dimer if DNA polymerase V and the 3′ to 5′ exonuclease proofreading function encoded by dnaQ are inactivated
-
Borden, A., O'Grady, P.I., Vandewiele, D., Fernández de Henestrosa, A.R., Lawrence, C.W., and Woodgate, R. 2002. Escherichia coli DNA polymerase III can replicate efficiently past a T-T cis-syn cyclobutane dimer if DNA polymerase V and the 3′ to 5′ exonuclease proofreading function encoded by dnaQ are inactivated. J. Bacteriol. 184: 2674-2681.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2674-2681
-
-
Borden, A.1
O'Grady, P.I.2
Vandewiele, D.3
Fernández De Henestrosa, A.R.4
Lawrence, C.W.5
Woodgate, R.6
-
3
-
-
2442483884
-
The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivo
-
Brescia, C.C., Kaw, M.K., and Sledjeski, D.D. 2004. The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivo. J. Mol. Biol. 339: 505-514.
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 505-514
-
-
Brescia, C.C.1
Kaw, M.K.2
Sledjeski, D.D.3
-
4
-
-
0032493294
-
The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA
-
Connelly, J.C., Kirkham, L.A., and Leach, D.R. 1998. The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA. Proc. Natl. Acad. Sci. 95: 7969-7974.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 7969-7974
-
-
Connelly, J.C.1
Kirkham, L.A.2
Leach, D.R.3
-
5
-
-
17144406037
-
Retrotransposition strategies of the Lactococcus lactis Ll.LtrB group II intron are dictated by host identity and cellular environment
-
Coros, C.J., Landthaler, M., Piazza, C.L., Beauregard, A., Esposito, D., Perutka, J., Lambowitz, A.M., and Belfort, M. 2005. Retrotransposition strategies of the Lactococcus lactis Ll.LtrB group II intron are dictated by host identity and cellular environment. Mol. Microbiol. 56: 509-524.
-
(2005)
Mol. Microbiol.
, vol.56
, pp. 509-524
-
-
Coros, C.J.1
Landthaler, M.2
Piazza, C.L.3
Beauregard, A.4
Esposito, D.5
Perutka, J.6
Lambowitz, A.M.7
Belfort, M.8
-
6
-
-
0037436108
-
DNA damage-induced replication fork regression and processing in Escherichia coli
-
Courcelle, J., Donaldson, J.R., Chow, K.H., and Courcelle, C.T. 2003. DNA damage-induced replication fork regression and processing in Escherichia coli. Science 299: 1064-1067.
-
(2003)
Science
, vol.299
, pp. 1064-1067
-
-
Courcelle, J.1
Donaldson, J.R.2
Chow, K.H.3
Courcelle, C.T.4
-
7
-
-
0032555726
-
Retrohoming of a bacterial group II intron: Mobility via complete reverse splicing, independent of homologous DNA recombination
-
Cousineau, B., Smith, D., Lawrence-Cavanagh, S., Mueller, J.E., Yang, J., Mills, D., Manias, D., Dunny, G., Lambowitz, A.M., and Belfort, M. 1998. Retrohoming of a bacterial group II intron: Mobility via complete reverse splicing, independent of homologous DNA recombination. Cell 94: 451-462.
-
(1998)
Cell
, vol.94
, pp. 451-462
-
-
Cousineau, B.1
Smith, D.2
Lawrence-Cavanagh, S.3
Mueller, J.E.4
Yang, J.5
Mills, D.6
Manias, D.7
Dunny, G.8
Lambowitz, A.M.9
Belfort, M.10
-
8
-
-
0346191761
-
Answering the call: Coping with DNA damage at the most inopportune time
-
Crowley, D.J. and Courcelle, J. 2002. Answering the call: Coping with DNA damage at the most inopportune time. J. Biomed. Biotech. 2: 66-74.
-
(2002)
J. Biomed. Biotech.
, vol.2
, pp. 66-74
-
-
Crowley, D.J.1
Courcelle, J.2
-
9
-
-
0031859492
-
Domain structure and RNA annealing activity of Escherichia coli regulatory protein StpA
-
Cusick, M.E. and Belfort, M. 1998. Domain structure and RNA annealing activity of Escherichia coli regulatory protein StpA. Mol. Microbiol. 28: 847-857.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 847-857
-
-
Cusick, M.E.1
Belfort, M.2
-
10
-
-
0036493198
-
Compilation and analysis of group II intron insertions in bacterial genomes: Evidence for retroelement behavior
-
Dai, L. and Zimmerly, S. 2002. Compilation and analysis of group II intron insertions in bacterial genomes: Evidence for retroelement behavior. Nucleic Acids Res. 30: 1091-1102.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1091-1102
-
-
Dai, L.1
Zimmerly, S.2
-
11
-
-
85158011569
-
R2 and related site-specific non-long terminal repeat retrotransposons
-
ed. N.L. Craig, R. Craigie, M. Gellert, and A.M. Lambowitz, ASM Press, Washington, DC
-
Eickbush, T.H. 2002. R2 and related site-specific non-long terminal repeat retrotransposons. In Mobile DNA II (ed. N.L. Craig, R. Craigie, M. Gellert, and A.M. Lambowitz), pp. 813-835. ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 813-835
-
-
Eickbush, T.H.1
-
12
-
-
0030894573
-
Mobility of yeast mitochondrial group II introns: Engineering a new site specificity and retrohoming via full reverse splicing
-
Eskes, R., Yang, J., Lambowitz, A.M., and Perlman, P.S. 1997. Mobility of yeast mitochondrial group II introns: Engineering a new site specificity and retrohoming via full reverse splicing. Cell 88: 865-874.
-
(1997)
Cell
, vol.88
, pp. 865-874
-
-
Eskes, R.1
Yang, J.2
Lambowitz, A.M.3
Perlman, P.S.4
-
13
-
-
0021111835
-
Contribution of 3′-5′ exonuclease activity of DNA polymerase III holoenzyme from Escherichia coli to specificity
-
Fersht, A.R. and Knill-Jones, J.W. 1983. Contribution of 3′-5′ exonuclease activity of DNA polymerase III holoenzyme from Escherichia coli to specificity. J. Mol. Biol. 165: 669-682.
-
(1983)
J. Mol. Biol.
, vol.165
, pp. 669-682
-
-
Fersht, A.R.1
Knill-Jones, J.W.2
-
14
-
-
0034177771
-
Coping with replication 'train wrecks' in Escherichi coli using Pol V, Pol II and RecA proteins
-
Goodman, M.F. 2000. Coping with replication 'train wrecks' in Escherichi coli using Pol V, Pol II and RecA proteins. Trends Biochem. Sci. 25: 189-195.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 189-195
-
-
Goodman, M.F.1
-
15
-
-
0035997344
-
Error-prone repair DNA polymerases in prokaryotes and eukaryotes
-
-. 2002. Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu. Rev. Biochem. 71: 17-50.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 17-50
-
-
-
16
-
-
0034698288
-
Group II introns designed to insert into therapeutically-relevant DNA target sites in human cells
-
Guo, H., Karberg, M., Long, M., Jones III, J.P., Sullenger, B., and Lambowitz, A.M. 2000. Group II introns designed to insert into therapeutically-relevant DNA target sites in human cells. Science 289: 452-457.
-
(2000)
Science
, vol.289
, pp. 452-457
-
-
Guo, H.1
Karberg, M.2
Long, M.3
Jones III, J.P.4
Sullenger, B.5
Lambowitz, A.M.6
-
17
-
-
0024340114
-
New method for generating deletions and gene replacements in Escherichia coli
-
Hamilton, C.M., Aldea, M., Washburn, B.K., Babitzke, P., and Kushner, S.R. 1989. New method for generating deletions and gene replacements in Escherichia coli. J. Bacteriol. 171: 4617-4622.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 4617-4622
-
-
Hamilton, C.M.1
Aldea, M.2
Washburn, B.K.3
Babitzke, P.4
Kushner, S.R.5
-
18
-
-
0021368076
-
Method for determining whether a gene of Escherichia coli is essential: Application to the polA gene
-
Joyce, C.M. and Grindley, N.D. 1984. Method for determining whether a gene of Escherichia coli is essential: Application to the polA gene. J. Bacteriol. 158: 636-643.
-
(1984)
J. Bacteriol.
, vol.158
, pp. 636-643
-
-
Joyce, C.M.1
Grindley, N.D.2
-
20
-
-
2342419732
-
DNA replication fidelity
-
Kunkel, T.A. 2004. DNA replication fidelity. J. Biol. Chem. 275: 16895-16898.
-
(2004)
J. Biol. Chem.
, vol.275
, pp. 16895-16898
-
-
Kunkel, T.A.1
-
22
-
-
23944498152
-
Group II intron homing endonucleases: Ribonucleoprotein complexes with programmable target specificity
-
eds. M. Belfort et al., Springer-Verlag, Heidelberg, Germany
-
Lambowitz, A.M., Mohr, G., and Zimmerly, S. 2005. Group II intron homing endonucleases: Ribonucleoprotein complexes with programmable target specificity. In Homing endonucleases and inteins (eds. M. Belfort et al.), pp. 121-145. Springer-Verlag, Heidelberg, Germany.
-
(2005)
Homing Endonucleases and Inteins
, pp. 121-145
-
-
Lambowitz, A.M.1
Mohr, G.2
Zimmerly, S.3
-
23
-
-
0035902496
-
Interaction of the β sliding clamp with MutS, ligase, and DNA polymerase I
-
Lopez de Saro, F.J.L. and O'Donnell, M. 2001. Interaction of the β sliding clamp with MutS, ligase, and DNA polymerase I. Proc. Natl. Acad. Sci. 98: 8376-8380.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 8376-8380
-
-
Lopez De Saro, F.J.L.1
O'Donnell, M.2
-
24
-
-
0348134870
-
Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair
-
Lopez de Saro, F.J., Georgescu, R.E., Goodman, M.F., and O'Donnell, M. 2003. Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair. EMBO J. 22: 6408-6418.
-
(2003)
EMBO J.
, vol.22
, pp. 6408-6418
-
-
Lopez De Saro, F.J.1
Georgescu, R.E.2
Goodman, M.F.3
O'Donnell, M.4
-
25
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
Luan, D.D., Korman, M.H., Jakubczak, J.L., and Eickbush, T.H. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition. Cell 72: 595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
26
-
-
0034917751
-
Phylogenetic analysis of ribonuclease H domains suggest a late, chimeric origin of LTR retrotransposable elements and retroviruses
-
Malik, H.S. and Eickbush, T.H. 2001. Phylogenetic analysis of ribonuclease H domains suggest a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res. 11: 1187-1197.
-
(2001)
Genome Res.
, vol.11
, pp. 1187-1197
-
-
Malik, H.S.1
Eickbush, T.H.2
-
27
-
-
0034326314
-
RecA-independent ectopic transposition in vivo of a bacterial group II intron
-
Martínez-Abarca, F. and Toro, N. 2000. RecA-independent ectopic transposition in vivo of a bacterial group II intron. Nucleic Acids Res. 28: 4397-4402.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4397-4402
-
-
Martínez-Abarca, F.1
Toro, N.2
-
28
-
-
0034024848
-
Homing of a bacterial group II intron with an intronencoded protein lacking a recognizable endonuclease domain
-
Martínez-Abarca, F., Garcia-Rodriguez, F.M., and Toro, N. 2000. Homing of a bacterial group II intron with an intronencoded protein lacking a recognizable endonuclease domain. Mol. Microbiol. 35: 1405-1412.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 1405-1412
-
-
Martínez-Abarca, F.1
Garcia-Rodriguez, F.M.2
Toro, N.3
-
29
-
-
3042725448
-
The RmInt1 group II intron has two different retrohoming pathways for mobility using predominantly the nascent lagging strand at DNA replication forks for priming
-
Martíinez-Abarca, F., Barrientos-Duran, A., Fernandez-Lopez, M., and Toro, N. 2004. The RmInt1 group II intron has two different retrohoming pathways for mobility using predominantly the nascent lagging strand at DNA replication forks for priming. Nucleic Acids Res. 32: 2880-2888.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2880-2888
-
-
Martíinez-Abarca, F.1
Barrientos-Duran, A.2
Fernandez-Lopez, M.3
Toro, N.4
-
30
-
-
9844256088
-
A bacterial group II intron encoding reverse transcriptase, maturase, and DNA endonuclease activities: Biochemical demonstration of maturase activity and insertion of new genetic information within the intron
-
Matsuura, M., Saldanha, R., Ma, H., Wank, H., Yang, J., Mohr, G., Cavanagh, S., Dunny, G.M., Belfort, M., and Lambowitz, A.M. 1997. A bacterial group II intron encoding reverse transcriptase, maturase, and DNA endonuclease activities: Biochemical demonstration of maturase activity and insertion of new genetic information within the intron. Genes & Dev. 11: 2910-2924.
-
(1997)
Genes & Dev.
, vol.11
, pp. 2910-2924
-
-
Matsuura, M.1
Saldanha, R.2
Ma, H.3
Wank, H.4
Yang, J.5
Mohr, G.6
Cavanagh, S.7
Dunny, G.M.8
Belfort, M.9
Lambowitz, A.M.10
-
31
-
-
0029949972
-
Splicing of a group II intron involved in the conjugative transfer of pRS01 in lactococci
-
Mills, D.A., McKay, L.L., and Dunny, G.M. 1996. Splicing of a group II intron involved in the conjugative transfer of pRS01 in lactococci. J. Bacteriol. 178: 3531-3538.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3531-3538
-
-
Mills, D.A.1
McKay, L.L.2
Dunny, G.M.3
-
32
-
-
0030963986
-
Homing of a group II intron from Lactococcus lactis subsp. lactis ML3
-
Mills, D.A., Manias, D.A., McKay, L.L., and Dunny, G.M. 1997. Homing of a group II intron from Lactococcus lactis subsp. lactis ML3. J. Bacteriol. 179: 6107-6111.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6107-6111
-
-
Mills, D.A.1
Manias, D.A.2
McKay, L.L.3
Dunny, G.M.4
-
33
-
-
85158032394
-
Mammalian LINE-1 retrotransposons and related elements
-
eds. N.L. Craig et al., ASM Press, Washington, DC
-
Moran, J.V. and Gilbert, N. 2002. Mammalian LINE-1 retrotransposons and related elements. In Mobile DNA II (eds. N.L. Craig et al.), pp. 836-869. ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 836-869
-
-
Moran, J.V.1
Gilbert, N.2
-
34
-
-
0032932638
-
Function, mechanism and regulation of bacterial ribonucleases
-
Nicholson, A.W. 1999. Function, mechanism and regulation of bacterial ribonucleases. FEMS Microbiol. Rev. 23: 371-390.
-
(1999)
FEMS Microbiol. Rev.
, vol.23
, pp. 371-390
-
-
Nicholson, A.W.1
-
35
-
-
1942439667
-
Switching from high-fidelity replicases to low-fidelity lesion-bypass polymerases
-
Plosky, B.S. and Woodgate, R. 2004. Switching from high-fidelity replicases to low-fidelity lesion-bypass polymerases. Curr. Opin. Genet. Dev. 14: 113-119.
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 113-119
-
-
Plosky, B.S.1
Woodgate, R.2
-
36
-
-
0033551494
-
RNA and protein catalysis in group II intron splicing and mobility reactions using purified components
-
Saldanha, R., Chen, B., Wank, H., Matsuura, M., Edwards, J., and Lambowitz, A.M. 1999. RNA and protein catalysis in group II intron splicing and mobility reactions using purified components. Biochemistry 38: 9069-9083.
-
(1999)
Biochemistry
, vol.38
, pp. 9069-9083
-
-
Saldanha, R.1
Chen, B.2
Wank, H.3
Matsuura, M.4
Edwards, J.5
Lambowitz, A.M.6
-
37
-
-
0030016467
-
Splicing of a group II intron in a functional transfer gene of Lactococcus lactis
-
Shearman, C., Godon, J.-J., and Gasson, M. 1996. Splicing of a group II intron in a functional transfer gene of Lactococcus lactis. Mol. Microbiol. 21: 45-53.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 45-53
-
-
Shearman, C.1
Godon, J.-J.2
Gasson, M.3
-
38
-
-
0015880061
-
Infidelity of DNA synthesis by reverse transcriptase
-
Springgate, C.F., Battula, N., and Loeb, L.A. 1973. Infidelity of DNA synthesis by reverse transcriptase. Biochem. Biophys. Res. Commun. 52: 401-406.
-
(1973)
Biochem. Biophys. Res. Commun.
, vol.52
, pp. 401-406
-
-
Springgate, C.F.1
Battula, N.2
Loeb, L.A.3
-
39
-
-
0025122284
-
Processive replication is contingent on the exonuclease subunit of DNA polymerase III holoenzyme
-
Studwell, P.S. and O'Donnell, M. 1990. Processive replication is contingent on the exonuclease subunit of DNA polymerase III holoenzyme. J. Biol. Chem. 265: 1171-1178.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 1171-1178
-
-
Studwell, P.S.1
O'Donnell, M.2
-
40
-
-
0035902615
-
Managing DNA polymerases: Coordinating DNA replication, DNA repair, and DNA recombination
-
Sutton, M.D. and Walker, G.C. 2001. Managing DNA polymerases: Coordinating DNA replication, DNA repair, and DNA recombination. Proc. Natl. Acad. Sci. 98: 8342-8349.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 8342-8349
-
-
Sutton, M.D.1
Walker, G.C.2
-
41
-
-
0034720286
-
Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis
-
Tang, M., Pham, P., Shen, X., Taylor, J.-S., O'Donnell, M., Woodgate, R., and Goodman, M.F. 2000. Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis. Nature 404: 1014-1018.
-
(2000)
Nature
, vol.404
, pp. 1014-1018
-
-
Tang, M.1
Pham, P.2
Shen, X.3
Taylor, J.-S.4
O'Donnell, M.5
Woodgate, R.6
Goodman, M.F.7
-
42
-
-
2542440567
-
Error-prone replication for better or worse
-
Tippin, B., Pham, P., and Goodman, M.F. 2004. Error-prone replication for better or worse. Trends Microbiol. 12: 288-295.
-
(2004)
Trends Microbiol.
, vol.12
, pp. 288-295
-
-
Tippin, B.1
Pham, P.2
Goodman, M.F.3
-
43
-
-
0036371843
-
Antisense RNAs in bacteria and their genetic elements
-
Wagner, E.G.H., Altuvia, S., and Romby, P. 2002. Antisense RNAs in bacteria and their genetic elements. Adv. Genet. 46: 361-398.
-
(2002)
Adv. Genet.
, vol.46
, pp. 361-398
-
-
Wagner, E.G.H.1
Altuvia, S.2
Romby, P.3
-
44
-
-
0033180584
-
A reverse-transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA
-
Wank, H., SanFilippo, J., Singh, R.N., Matsuura, M., and Lambowitz, A.M. 1999. A reverse-transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA. Mol. Cell 4: 239-250.
-
(1999)
Mol. Cell
, vol.4
, pp. 239-250
-
-
Wank, H.1
SanFilippo, J.2
Singh, R.N.3
Matsuura, M.4
Lambowitz, A.M.5
-
45
-
-
0042236980
-
Group II intron mobility using nascent strands at DNA replication forks to prime reverse transcription
-
Zhong, J. and Lambowitz, A.M. 2003. Group II intron mobility using nascent strands at DNA replication forks to prime reverse transcription. EMBO J. 22: 4555-4565.
-
(2003)
EMBO J.
, vol.22
, pp. 4555-4565
-
-
Zhong, J.1
Lambowitz, A.M.2
-
46
-
-
0037444087
-
Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker
-
Zhong, J., Karberg, M., and Lambowitz, A.M. 2003. Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker. Nucleic Acids Res. 31: 1656-1664.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1656-1664
-
-
Zhong, J.1
Karberg, M.2
Lambowitz, A.M.3
|