메뉴 건너뛰기




Volumn 8, Issue 12, 2007, Pages 973-982

A unified classification system for eukaryotic transposable elements

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTE; FUNGUS; GENE SEQUENCE; GENE STRUCTURE; GENOME; NONHUMAN; PRIORITY JOURNAL; RETROPOSON; REVIEW; TRANSPOSON;

EID: 36249023071     PISSN: 14710056     EISSN: 14710064     Source Type: Journal    
DOI: 10.1038/nrg2165     Document Type: Review
Times cited : (2136)

References (93)
  • 1
    • 0017716749 scopus 로고
    • Repeated sequence DNA relationships in four cereal genomes
    • Flavell, R. B., Rimpau, J. & Smith, D. B. Repeated sequence DNA relationships in four cereal genomes. Chromosoma 63, 205-222 (1977).
    • (1977) Chromosoma , vol.63 , pp. 205-222
    • Flavell, R.B.1    Rimpau, J.2    Smith, D.B.3
  • 2
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project. The map-based sequence of the rice genome. Nature 436, 793-800 (2005).
    • (2005) Nature , vol.436 , pp. 793-800
  • 3
    • 0034708480 scopus 로고    scopus 로고
    • The genome sequence of Drosophila melanogaster
    • Adams, M. et al. The genome sequence of Drosophila melanogaster. Science 287, 2185-2195 (2000).
    • (2000) Science , vol.287 , pp. 2185-2195
    • Adams, M.1
  • 4
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001).
    • (2001) Nature , vol.409 , pp. 860-921
  • 5
    • 33645938294 scopus 로고    scopus 로고
    • Plant genome organisation and diversity: The year of the junk!
    • Morgante, M. Plant genome organisation and diversity: the year of the junk! Curr. Opin. Biotechnol. 17, 168-173 (2005).
    • (2005) Curr. Opin. Biotechnol , vol.17 , pp. 168-173
    • Morgante, M.1
  • 6
    • 27444444339 scopus 로고    scopus 로고
    • Transposable elements, gene creation and genome rearrangement in flowering plants
    • Bennetzen, J. Transposable elements, gene creation and genome rearrangement in flowering plants. Curr. Opin. Genet. Dev. 15, 621-627 (2005).
    • (2005) Curr. Opin. Genet. Dev , vol.15 , pp. 621-627
    • Bennetzen, J.1
  • 7
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte, C., Jiang, N. & Wessler, S. Plant transposable elements: where genetics meets genomics. Nature Rev. Genet. 3, 329-341 (2002).
    • (2002) Nature Rev. Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.3
  • 8
    • 0032413101 scopus 로고    scopus 로고
    • Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
    • SanMiguel, P. & Bennetzen, J. L. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. 82, 37-44 (1998).
    • (1998) Ann. Bot , vol.82 , pp. 37-44
    • SanMiguel, P.1    Bennetzen, J.L.2
  • 9
    • 0141468761 scopus 로고    scopus 로고
    • Transposable elements in filamentous fungi
    • Daboussi, M. & Capy, P. Transposable elements in filamentous fungi. Annu. Rev. Microbiol. 57, 275-299 (2003).
    • (2003) Annu. Rev. Microbiol , vol.57 , pp. 275-299
    • Daboussi, M.1    Capy, P.2
  • 10
    • 15544384048 scopus 로고    scopus 로고
    • Abundance, distribution and dynamics of retrotransposable elements and transposons: Similarities and differences
    • Hua-Van, A., Le Rouzic, A., Maisonhaute, C. & Capy, P. Abundance, distribution and dynamics of retrotransposable elements and transposons: similarities and differences. Cytogenet. Genome Res. 110, 426-440 (2005).
    • (2005) Cytogenet. Genome Res , vol.110 , pp. 426-440
    • Hua-Van, A.1    Le Rouzic, A.2    Maisonhaute, C.3    Capy, P.4
  • 11
    • 0024505998 scopus 로고
    • Eukaryotic transposable elements and genome evolution
    • Finnegan, D. J. Eukaryotic transposable elements and genome evolution. Trends Genet. 5, 103-107 (1989).
    • (1989) Trends Genet , vol.5 , pp. 103-107
    • Finnegan, D.J.1
  • 12
    • 6344284218 scopus 로고    scopus 로고
    • Requirement of IS911 replication before integration defines a new bacterial transposition pathway
    • Duval-Valentin, G., Marty-Cointin, B. & Chandler, M. Requirement of IS911 replication before integration defines a new bacterial transposition pathway. EMBO J. 23, 3897-3906 (2004).
    • (2004) EMBO J , vol.23 , pp. 3897-3906
    • Duval-Valentin, G.1    Marty-Cointin, B.2    Chandler, M.3
  • 13
    • 25144488228 scopus 로고    scopus 로고
    • Gene duplication and exon shuffling by Helitron-like transposons generate intraspecies diversity in maize
    • Morgante, M. et al. Gene duplication and exon shuffling by Helitron-like transposons generate intraspecies diversity in maize. Nature Genet. 37, 997-1002 (2005).
    • (2005) Nature Genet , vol.37 , pp. 997-1002
    • Morgante, M.1
  • 14
    • 21144454436 scopus 로고    scopus 로고
    • Gene movement by Helitron transposons contributes to the haplotype variability of maize
    • Lai, J., Li, Y., Messing, J. & Dooner, H. K. Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc. Natl Acad. Sci. USA 102, 9068-9073 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 9068-9073
    • Lai, J.1    Li, Y.2    Messing, J.3    Dooner, H.K.4
  • 15
    • 0242636324 scopus 로고    scopus 로고
    • The outs and ins of transposition: From mu to kangaroo
    • Curcio, M. & Derbyshire, K. The outs and ins of transposition: from mu to kangaroo. Nature Rev. Mol. Cell Biol. 4, 865-877 (2003).
    • (2003) Nature Rev. Mol. Cell Biol , vol.4 , pp. 865-877
    • Curcio, M.1    Derbyshire, K.2
  • 16
  • 17
    • 24644516249 scopus 로고    scopus 로고
    • LINE-1 retrotransposons: Modulators of quantity and quality of mammalian gene expression?
    • Han, J. S. & Boeke, J. D. LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression? BioEssays 27, 775-784 (2005).
    • (2005) BioEssays , vol.27 , pp. 775-784
    • Han, J.S.1    Boeke, J.D.2
  • 18
    • 33845190150 scopus 로고    scopus 로고
    • Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome
    • Sabot, F. & Schulman, A. H. Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome. Heredity 97, 381-388 (2006).
    • (2006) Heredity , vol.97 , pp. 381-388
    • Sabot, F.1    Schulman, A.H.2
  • 19
    • 0013630297 scopus 로고    scopus 로고
    • Nested retrotransposons in the intergenic regions of the maize genome
    • SanMiguel, P. et al. Nested retrotransposons in the intergenic regions of the maize genome. Science 274, 765-768 (1996).
    • (1996) Science , vol.274 , pp. 765-768
    • SanMiguel, P.1
  • 20
    • 0346669745 scopus 로고    scopus 로고
    • Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced
    • Neumann, P., Pozarkova, D. & Macas, J. Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced. Plant Mol. Biol. 53, 399-410 (2003).
    • (2003) Plant Mol. Biol , vol.53 , pp. 399-410
    • Neumann, P.1    Pozarkova, D.2    Macas, J.3
  • 21
    • 0034944487 scopus 로고    scopus 로고
    • Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum) reveals multiple mechanisms of genome evolution
    • Wicker, T. et al. Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum) reveals multiple mechanisms of genome evolution. Plant J. 26, 307-316 (2001).
    • (2001) Plant J , vol.26 , pp. 307-316
    • Wicker, T.1
  • 22
    • 0033290999 scopus 로고    scopus 로고
    • Structure, functionality, and evolution of the BARE-1 retrotransposon of barley
    • Vicient, C. M., Kalendar, R., Anamthawat-Jonsson, K. & Schulman, A. H. Structure, functionality, and evolution of the BARE-1 retrotransposon of barley. Genetica 107, 53-63 (1999).
    • (1999) Genetica , vol.107 , pp. 53-63
    • Vicient, C.M.1    Kalendar, R.2    Anamthawat-Jonsson, K.3    Schulman, A.H.4
  • 24
    • 0036110295 scopus 로고    scopus 로고
    • Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery
    • Peterson, D. et al. Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery. Genome Res. 12, 795-807 (2002).
    • (2002) Genome Res , vol.12 , pp. 795-807
    • Peterson, D.1
  • 25
    • 0036889395 scopus 로고    scopus 로고
    • Fruit flies and humans respond differently to retrotransposons
    • Eickbush, T. & Furano, A. Fruit flies and humans respond differently to retrotransposons. Curr. Opin. Genet. Dev. 12, 669-674 (2002).
    • (2002) Curr. Opin. Genet. Dev , vol.12 , pp. 669-674
    • Eickbush, T.1    Furano, A.2
  • 26
    • 0031711593 scopus 로고    scopus 로고
    • HIV-1: Fifteen proteins and an RNA
    • Frankel, A. D. & Young, J. A. HIV-1: fifteen proteins and an RNA. Ann. Rev. Biochem. 67, 1-25 (1998).
    • (1998) Ann. Rev. Biochem , vol.67 , pp. 1-25
    • Frankel, A.D.1    Young, J.A.2
  • 27
    • 20444401322 scopus 로고    scopus 로고
    • Role of viral regulatory and accessory proteins in HIV-1 replication
    • Seelamgari, A. et al. Role of viral regulatory and accessory proteins in HIV-1 replication. Front. Biosci. 9, 2388-2413 (2004).
    • (2004) Front. Biosci , vol.9 , pp. 2388-2413
    • Seelamgari, A.1
  • 28
    • 0029097654 scopus 로고
    • The relationship between the flamenco gene and gypsy in Drosophila: How to tame a retrovirus
    • Bucheton, A. The relationship between the flamenco gene and gypsy in Drosophila: how to tame a retrovirus. Trends Genet. 11, 349-353 (1995).
    • (1995) Trends Genet , vol.11 , pp. 349-353
    • Bucheton, A.1
  • 29
    • 0004750711 scopus 로고    scopus 로고
    • International Committee on Taxonomy of Viruses, online
    • International Committee on Taxonomy of Viruses. The Universal Virus Database. [online],〈http://www..ncbi.nlm.nih.gov/ICTVdb/index.htm〉 (2007).
    • (2007) The Universal Virus Database
  • 30
    • 23844549558 scopus 로고    scopus 로고
    • Classification and nomenclature of retrotransposable elements
    • Capy, P. Classification and nomenclature of retrotransposable elements. Cytogenet. Genome Res. 110, 457-461 (2005).
    • (2005) Cytogenet. Genome Res , vol.110 , pp. 457-461
    • Capy, P.1
  • 31
    • 33750341578 scopus 로고    scopus 로고
    • The evolutionary dynamics of human endogenous retroviral families
    • Bannert, N. & Kurth, R. The evolutionary dynamics of human endogenous retroviral families. Annu. Rev. Genomics Hum. Genet. 7, 149-173 (2006).
    • (2006) Annu. Rev. Genomics Hum. Genet , vol.7 , pp. 149-173
    • Bannert, N.1    Kurth, R.2
  • 32
    • 0027281011 scopus 로고
    • Pao, a highly divergent retrotransposable element from Bombyx mori containing long terminal repeats with tandem copies of the putative R region
    • Xiong, Y., Burke, W. & Eickbush, T. Pao, a highly divergent retrotransposable element from Bombyx mori containing long terminal repeats with tandem copies of the putative R region. Nucleic Acids Res. 21, 2117-2123 (1993).
    • (1993) Nucleic Acids Res , vol.21 , pp. 2117-2123
    • Xiong, Y.1    Burke, W.2    Eickbush, T.3
  • 33
    • 0034143269 scopus 로고    scopus 로고
    • Systematic screening of Anopheles mosquito genomes yields evidence for a major clade of Pao-like retrotransposons
    • Cook, J., Martin, J., Lewin, A., Sinden, R. & Tristem, M. Systematic screening of Anopheles mosquito genomes yields evidence for a major clade of Pao-like retrotransposons. Insect Mol. Biol. 9, 109-117 (2000).
    • (2000) Insect Mol. Biol , vol.9 , pp. 109-117
    • Cook, J.1    Martin, J.2    Lewin, A.3    Sinden, R.4    Tristem, M.5
  • 34
    • 0022157359 scopus 로고
    • Sequence of Dictyostelium DIRS-1: An apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence
    • Cappello, J., Handelsman, K. & Lodish, H. Sequence of Dictyostelium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence. Cell 43, 105-115 (1985).
    • (1985) Cell , vol.43 , pp. 105-115
    • Cappello, J.1    Handelsman, K.2    Lodish, H.3
  • 35
    • 1842609646 scopus 로고    scopus 로고
    • A new group of tyrosine recombinase-encoding retrotransposons
    • Goodwin, T. & Poulter, R. A new group of tyrosine recombinase-encoding retrotransposons. Mol. Biol. Evol. 21, 746-759 (2004).
    • (2004) Mol. Biol. Evol , vol.21 , pp. 746-759
    • Goodwin, T.1    Poulter, R.2
  • 36
    • 0031021619 scopus 로고    scopus 로고
    • Penelope, a new family of transposable elements and its possible role in hybrid dysgenesis in Drosophila virilis
    • Evgen'ev, M. et al. Penelope, a new family of transposable elements and its possible role in hybrid dysgenesis in Drosophila virilis. Proc. Natl Acad. Sci. USA 94, 196-201 (1997).
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 196-201
    • Evgen'ev, M.1
  • 37
    • 23844456247 scopus 로고    scopus 로고
    • Penelope-like elements - a new class of retroelements: Distribution, function and possible evolutionary significance
    • Evgen'ev, M. & Arkhipova, I. Penelope-like elements - a new class of retroelements: distribution, function and possible evolutionary significance. Cytogenet. Genome Res. 110, 510-521 (2005).
    • (2005) Cytogenet. Genome Res , vol.110 , pp. 510-521
    • Evgen'ev, M.1    Arkhipova, I.2
  • 38
    • 0002617455 scopus 로고    scopus 로고
    • eds Craig, N. L, Craigie, R, Gellert, M. & Lambowitz, A. M, ASM, Herndon
    • Eickbush, T. H. & Malik, H. S. in Mobile DNA II (eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A. M.) 1111-1146 (ASM, Herndon, 2002).
    • (2002) Mobile DNA II , pp. 1111-1146
    • Eickbush, T.H.1    Malik, H.S.2
  • 39
    • 0242666320 scopus 로고    scopus 로고
    • Non-LTR retrotransposons in the african malaria mosquito, Anopheles gambiae: Unprecedented diversity and evidence of recent activity
    • Biedler, J. & Tu, Z. Non-LTR retrotransposons in the african malaria mosquito, Anopheles gambiae: unprecedented diversity and evidence of recent activity. Mol. Biol. Evol. 20, 1811-1825 (2003).
    • (2003) Mol. Biol. Evol , vol.20 , pp. 1811-1825
    • Biedler, J.1    Tu, Z.2
  • 40
    • 20544441973 scopus 로고    scopus 로고
    • Genetics: LINEs in mind
    • Ostertag, E. M. & Kazazian, H. H. Genetics: LINEs in mind. Nature 435, 890-891 (2005).
    • (2005) Nature , vol.435 , pp. 890-891
    • Ostertag, E.M.1    Kazazian, H.H.2
  • 41
    • 0031891484 scopus 로고    scopus 로고
    • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups
    • Petrov, D. A. & Hartl, D. L. High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol. Biol. Evol. 15, 293-302 (1998).
    • (1998) Mol. Biol. Evol , vol.15 , pp. 293-302
    • Petrov, D.A.1    Hartl, D.L.2
  • 42
    • 0027500625 scopus 로고
    • An abundant LINE-like element amplified in the genome of Lilium speciosum
    • Leeton, P. R. & Smyth, D. R. An abundant LINE-like element amplified in the genome of Lilium speciosum. Mol. Gen. Genet. 237, 97-104 (1993).
    • (1993) Mol. Gen. Genet , vol.237 , pp. 97-104
    • Leeton, P.R.1    Smyth, D.R.2
  • 43
    • 0034809990 scopus 로고    scopus 로고
    • Evolutionary dynamics and evolutionary history in the RTE clade of non-LTR retrotransposons
    • Zupunski, V., Gubensek, F. & Kordis, D. Evolutionary dynamics and evolutionary history in the RTE clade of non-LTR retrotransposons. Mol. Biol. Evol. 18, 1849-1863 (2001).
    • (2001) Mol. Biol. Evol , vol.18 , pp. 1849-1863
    • Zupunski, V.1    Gubensek, F.2    Kordis, D.3
  • 44
    • 28844473478 scopus 로고    scopus 로고
    • Short retroposons in eukaryotic genomes
    • Kramerov, D. & Vassetzky, N. Short retroposons in eukaryotic genomes. Int. Rev. Cytol. 247, 165-221 (2005).
    • (2005) Int. Rev. Cytol , vol.247 , pp. 165-221
    • Kramerov, D.1    Vassetzky, N.2
  • 45
    • 0041353551 scopus 로고    scopus 로고
    • LINE-mediated retrotransposition of marked Alu sequences
    • Dewannieux, M., Esnault, C. & Heidmann, T. LINE-mediated retrotransposition of marked Alu sequences. Nature Genet. 35, 41-48 (2003).
    • (2003) Nature Genet , vol.35 , pp. 41-48
    • Dewannieux, M.1    Esnault, C.2    Heidmann, T.3
  • 46
    • 0036849412 scopus 로고    scopus 로고
    • LINEs mobilize SINEs in the eel through a shared 3′ sequence
    • Kajikawa, M. & Okada, N. LINEs mobilize SINEs in the eel through a shared 3′ sequence. Cell 111, 433-444 (2002).
    • (2002) Cell , vol.111 , pp. 433-444
    • Kajikawa, M.1    Okada, N.2
  • 47
    • 0034535678 scopus 로고    scopus 로고
    • Alu elements and the human genome
    • Rowold, D. J. & Herrara, R. J. Alu elements and the human genome. Genetica 108, 57-72 (2000).
    • (2000) Genetica , vol.108 , pp. 57-72
    • Rowold, D.J.1    Herrara, R.J.2
  • 48
    • 0038363536 scopus 로고    scopus 로고
    • CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements
    • Wicker, T., Guyot, R., Yahiaoui, N. & Keller, B. CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements. Plant Physiol. 132, 52-63 (2003).
    • (2003) Plant Physiol , vol.132 , pp. 52-63
    • Wicker, T.1    Guyot, R.2    Yahiaoui, N.3    Keller, B.4
  • 49
    • 0003873979 scopus 로고    scopus 로고
    • eds Craig, N, Craigie, R, Gellert, M. & Lambowitz, A, ASM, Washington D.C
    • Chandler, M. & Mahillon, J. in Mobile DNA II (eds Craig, N., Craigie, R., Gellert, M. & Lambowitz, A.) (ASM, Washington D.C., 2002).
    • (2002) Mobile DNA II
    • Chandler, M.1    Mahillon, J.2
  • 50
    • 0000585595 scopus 로고
    • Twin mutations in medium variegated pericarp maize
    • Greenblatt, I. M. & Brink, R. A. Twin mutations in medium variegated pericarp maize. Genetics 47, 489-501 (1962).
    • (1962) Genetics , vol.47 , pp. 489-501
    • Greenblatt, I.M.1    Brink, R.A.2
  • 51
    • 36248969084 scopus 로고    scopus 로고
    • Capy, P, Bazin, C, Higuet, D. & Langin, T, eds, Library of Congress, Austin
    • Capy, P., Bazin, C., Higuet, D. & Langin, T. (eds) Dynamics and evolution of transposable elements (Library of Congress, Austin, 1998).
    • (1998) Dynamics and evolution of transposable elements
  • 52
    • 0028197257 scopus 로고
    • Efficient copying of nonhomologous sequences from ectopic sites via P-element- induced gap repair
    • Nassif, N., Penney, J., Pal, S., Engels, W. & Gloor, G. Efficient copying of nonhomologous sequences from ectopic sites via P-element- induced gap repair. Mol. Cell. Biol. 14, 1613-1625 (1994).
    • (1994) Mol. Cell. Biol , vol.14 , pp. 1613-1625
    • Nassif, N.1    Penney, J.2    Pal, S.3    Engels, W.4    Gloor, G.5
  • 53
    • 26944453651 scopus 로고    scopus 로고
    • Molecular architecture of a eukaryotic DNA transposase
    • Hickman, A. et al. Molecular architecture of a eukaryotic DNA transposase. Nature Struct. Biol. 12, 715-721 (2005).
    • (2005) Nature Struct. Biol , vol.12 , pp. 715-721
    • Hickman, A.1
  • 54
    • 0035679808 scopus 로고    scopus 로고
    • Expanding the diversity of the IS630-Tc1- mariner superfamily: Discovery of a unique DD37E transposon and reclassification of the DD37D and DD39D transposons
    • Shao, H. & Tu, Z. Expanding the diversity of the IS630-Tc1- mariner superfamily: discovery of a unique DD37E transposon and reclassification of the DD37D and DD39D transposons. Genetics 159, 1103-1115 (2001).
    • (2001) Genetics , vol.159 , pp. 1103-1115
    • Shao, H.1    Tu, Z.2
  • 55
    • 0035035214 scopus 로고    scopus 로고
    • The hAT family: A versatile transposon group common to plants, fungi, animals, and man
    • Kempken, F. & Windhofer, F. The hAT family: a versatile transposon group common to plants, fungi, animals, and man. Chromosoma 110, 1-9 (2001).
    • (2001) Chromosoma , vol.110 , pp. 1-9
    • Kempken, F.1    Windhofer, F.2
  • 56
    • 0025935671 scopus 로고
    • Evidence for a common evolutionary origin of inverted repeat transposons in Drosophila and plants: Hobo, Activator, and Tam3
    • Calvi, B. R., Hong, T. J., Findley, S. D. & Gelbart, W. M. Evidence for a common evolutionary origin of inverted repeat transposons in Drosophila and plants: hobo, Activator, and Tam3. Cell 66, 465-471 (1991).
    • (1991) Cell , vol.66 , pp. 465-471
    • Calvi, B.R.1    Hong, T.J.2    Findley, S.D.3    Gelbart, W.M.4
  • 57
    • 0021646228 scopus 로고
    • Transposable elements Ac and Ds at the shrunken, waxy, and alcohol dehydrogenase 1 loci in Zea mays L
    • Courage, U. et al. Transposable elements Ac and Ds at the shrunken, waxy, and alcohol dehydrogenase 1 loci in Zea mays L. Cold Spring Harb. Symp. Quant. Biol. 49, 329-338 (1984).
    • (1984) Cold Spring Harb. Symp. Quant. Biol , vol.49 , pp. 329-338
    • Courage, U.1
  • 58
    • 0026110732 scopus 로고
    • Structural analysis of Tam3, a transposable element from Antirrhinum majus, reveals homologies to the Ac element from maize
    • Hehl, R., Nacken, W. K., Krause, A., Saedler, H. & Sommer, H. Structural analysis of Tam3, a transposable element from Antirrhinum majus, reveals homologies to the Ac element from maize. Plant Mol. Biol. 6, 369-371 (1991).
    • (1991) Plant Mol. Biol , vol.6 , pp. 369-371
    • Hehl, R.1    Nacken, W.K.2    Krause, A.3    Saedler, H.4    Sommer, H.5
  • 59
    • 23944436677 scopus 로고    scopus 로고
    • Unexpected diversity and differential success of DNA transposons in four species of entamoeba protozoans
    • Pritham, E. J., Feschotte, C. & Wessler, S. R. Unexpected diversity and differential success of DNA transposons in four species of entamoeba protozoans. Mol. Biol. Evol. 22, 1751-1763 (2005).
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1751-1763
    • Pritham, E.J.1    Feschotte, C.2    Wessler, S.R.3
  • 60
    • 4143085887 scopus 로고    scopus 로고
    • Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences
    • Feschotte, C. Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences. Mol. Biol. Evol. 21, 1769-1780 (2004).
    • (2004) Mol. Biol. Evol , vol.21 , pp. 1769-1780
    • Feschotte, C.1
  • 61
    • 22744445703 scopus 로고    scopus 로고
    • RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons
    • Kapitonov, V. V. & Jurka, J. RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biol. 3, e181 (2005).
    • (2005) PLoS Biol , vol.3
    • Kapitonov, V.V.1    Jurka, J.2
  • 62
    • 0037975554 scopus 로고    scopus 로고
    • Kapitonov, V. V. & J., J. Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc. Natl Acad. Sci. USA 100, 6569-6574 (2003).
    • Kapitonov, V. V. & J., J. Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc. Natl Acad. Sci. USA 100, 6569-6574 (2003).
  • 63
    • 16344394793 scopus 로고    scopus 로고
    • Homologs of Drosophila P transposons were mobile in zebrafish but have been domesticated in a common ancestor of chicken and human
    • Hammer, S. E., Strehl, S. & Hagemann, S. Homologs of Drosophila P transposons were mobile in zebrafish but have been domesticated in a common ancestor of chicken and human. Mol. Biol. Evol. 22, 833-844 (2005).
    • (2005) Mol. Biol. Evol , vol.22 , pp. 833-844
    • Hammer, S.E.1    Strehl, S.2    Hagemann, S.3
  • 64
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • Jurka, J. et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462-467 (2005).
    • (2005) Cytogenet. Genome Res , vol.110 , pp. 462-467
    • Jurka, J.1
  • 65
    • 0344442909 scopus 로고    scopus 로고
    • Molecular evolutionary analysis of the widespread piggyBac transposon family and related 'domesticated' sequences
    • Sarkar, A. et al. Molecular evolutionary analysis of the widespread piggyBac transposon family and related 'domesticated' sequences. Mol. Genet. Genomics 270, 173-180 (2003).
    • (2003) Mol. Genet. Genomics , vol.270 , pp. 173-180
    • Sarkar, A.1
  • 66
    • 17444416059 scopus 로고    scopus 로고
    • Elicitin genes in Phytophthora infestans are clustered and interspersed with various transposon-like elements
    • Jiang, R. et al. Elicitin genes in Phytophthora infestans are clustered and interspersed with various transposon-like elements. Mol. Genet. Genomics 273, 20-32 (2005).
    • (2005) Mol. Genet. Genomics , vol.273 , pp. 20-32
    • Jiang, R.1
  • 67
    • 0035940397 scopus 로고    scopus 로고
    • PIFs meet Tourists and Harbingers: A superfamily reunion
    • Jurka, J. & Kapitonov, V. V. PIFs meet Tourists and Harbingers: a superfamily reunion. Proc. Natl Acad. Sci. USA 98, 12315-12316 (2001).
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 12315-12316
    • Jurka, J.1    Kapitonov, V.V.2
  • 68
    • 33751086206 scopus 로고    scopus 로고
    • SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily
    • DeMarco, R., Venancio, T. & Verjovski-Almeida, S. SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily BMC Evol. Biol. 6, 89 (2006).
    • (2006) BMC Evol. Biol , vol.6 , pp. 89
    • DeMarco, R.1    Venancio, T.2    Verjovski-Almeida, S.3
  • 69
    • 0344012045 scopus 로고    scopus 로고
    • Cryptons: A group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi
    • Goodwin, T., Butler, M. I., Poulter, R. T. Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi. Microbiology 149, 3099-3109 (2003).
    • (2003) Microbiology , vol.149 , pp. 3099-3109
    • Goodwin, T.1    Butler, M.I.2    Poulter, R.T.3
  • 70
    • 0035902449 scopus 로고    scopus 로고
    • Rolling-circle transposons in eukaryotes
    • Kapitonov, V. & Jurka, J. Rolling-circle transposons in eukaryotes. Proc. Natl Acad. Sci. USA 98, 8714-8719 (2001).
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 8714-8719
    • Kapitonov, V.1    Jurka, J.2
  • 71
    • 23844559179 scopus 로고    scopus 로고
    • DIRS-1 and the other tyrosine recombinase retrotransposons
    • Poulter, R. & Goodwin, T. DIRS-1 and the other tyrosine recombinase retrotransposons. Cytogenet. Genome Res. 110, 575-588 (2005).
    • (2005) Cytogenet. Genome Res , vol.110 , pp. 575-588
    • Poulter, R.1    Goodwin, T.2
  • 72
    • 21044454492 scopus 로고    scopus 로고
    • Repetitive DNA in the automictic fungus Microbotryum violaceum
    • Hood, M. Repetitive DNA in the automictic fungus Microbotryum violaceum. Genetica 124, 1-10 (2005).
    • (2005) Genetica , vol.124 , pp. 1-10
    • Hood, M.1
  • 73
    • 33846931279 scopus 로고    scopus 로고
    • Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
    • Pritham, E. & Feschotte, C. Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus. Proc. Natl Acad. Sci. USA 104, 1895-1900 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 1895-1900
    • Pritham, E.1    Feschotte, C.2
  • 74
    • 24644509691 scopus 로고    scopus 로고
    • Non-mammalian c-integrases are encoded by giant transposable elements
    • Feschotte, C. & Pritham, E. J. Non-mammalian c-integrases are encoded by giant transposable elements. Trends Genet. 21, 551-552 (2005).
    • (2005) Trends Genet , vol.21 , pp. 551-552
    • Feschotte, C.1    Pritham, E.J.2
  • 75
    • 33645227457 scopus 로고    scopus 로고
    • Self-synthesizing DNA transposons in eukaryotes
    • Kapitonov, V. & Jurka, J. Self-synthesizing DNA transposons in eukaryotes. Proc. Natl Acad. Sci. USA 103, 4540-4545 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 4540-4545
    • Kapitonov, V.1    Jurka, J.2
  • 76
    • 33846939973 scopus 로고    scopus 로고
    • Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses
    • Pritham, E., Putliwala, T. & Feschotte, C. Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses. Gene 390, 3-17 (2007).
    • (2007) Gene , vol.390 , pp. 3-17
    • Pritham, E.1    Putliwala, T.2    Feschotte, C.3
  • 77
    • 33846967089 scopus 로고    scopus 로고
    • Life without GAG: The BARE-2 retrotransposon as a parasite's parasite
    • Tanskanen, J. A., Sabot, F., Vicient, C. & Schulman, A. H. Life without GAG: The BARE-2 retrotransposon as a parasite's parasite. Gene 390, 166-174 (2006).
    • (2006) Gene , vol.390 , pp. 166-174
    • Tanskanen, J.A.1    Sabot, F.2    Vicient, C.3    Schulman, A.H.4
  • 78
    • 1542321148 scopus 로고    scopus 로고
    • Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
    • Jiang, N., Feschotte, C., Zhang, X. & Wessler, S. R. Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Curr. Opin. Plant Biol. 7, 115-119 (2004).
    • (2004) Curr. Opin. Plant Biol , vol.7 , pp. 115-119
    • Jiang, N.1    Feschotte, C.2    Zhang, X.3    Wessler, S.R.4
  • 79
    • 1942421723 scopus 로고    scopus 로고
    • Kalendar, R. et al. LARD retroelements: novel, nonautonomous components of barley and related genomes. Genetics 166, 1437-1450 (2004).
    • Kalendar, R. et al. LARD retroelements: novel, nonautonomous components of barley and related genomes. Genetics 166, 1437-1450 (2004).
  • 80
    • 0035923510 scopus 로고    scopus 로고
    • Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes
    • Witte, C. P., Le, Q. H., Bureau, T. & Kumar, A. Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc. Natl Acad. Sci. USA 98, 13778-13783 (2001).
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 13778-13783
    • Witte, C.P.1    Le, Q.H.2    Bureau, T.3    Kumar, A.4
  • 81
    • 0346668134 scopus 로고    scopus 로고
    • Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome
    • Jiang, N., Jordan, I. K. & Wessler, S. R. Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome. Plant Physiol. 130, 1697-1705 (2002).
    • (2002) Plant Physiol , vol.130 , pp. 1697-1705
    • Jiang, N.1    Jordan, I.K.2    Wessler, S.R.3
  • 82
    • 0028450046 scopus 로고
    • Stowaway: A new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants
    • Bureau, T. E. & Wessler, S. R. Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6, 907-916 (1994).
    • (1994) Plant Cell , vol.6 , pp. 907-916
    • Bureau, T.E.1    Wessler, S.R.2
  • 83
    • 0037295458 scopus 로고    scopus 로고
    • Genome-wide analysis of Mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)
    • Feschotte, C., Swamy, L. & Wessler, S. R. Genome-wide analysis of Mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs). Genetics 163, 747-758 (2003).
    • (2003) Genetics , vol.163 , pp. 747-758
    • Feschotte, C.1    Swamy, L.2    Wessler, S.R.3
  • 84
    • 19944432437 scopus 로고    scopus 로고
    • The repetitive landscape of the chicken genome
    • Wicker, T. et al. The repetitive landscape of the chicken genome. Genome Res. 15, 126-136 (2005).
    • (2005) Genome Res , vol.15 , pp. 126-136
    • Wicker, T.1
  • 85
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • Ashburner, M. et al. Gene ontology: tool for the unification of biology. Nature Genet. 25, 25-29 (2000).
    • (2000) Nature Genet , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 87
    • 34347381116 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
    • Wicker, T. & Keller, B. Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families. Genome Res. 17, 1072-1081 (2007).
    • (2007) Genome Res , vol.17 , pp. 1072-1081
    • Wicker, T.1    Keller, B.2
  • 88
    • 0043166967 scopus 로고    scopus 로고
    • Dynamic, thermodynamic, and kinetic basis for recognition and transformation of DNA by human immunodeficiency virus type 1 integrase
    • Bugreev, D. et al. Dynamic, thermodynamic, and kinetic basis for recognition and transformation of DNA by human immunodeficiency virus type 1 integrase. Biochemistry 42, 9235-9247 (2003).
    • (2003) Biochemistry , vol.42 , pp. 9235-9247
    • Bugreev, D.1
  • 89
    • 0031045027 scopus 로고    scopus 로고
    • RNA packaging of yeast retrotransposon Ty1 in the heterologous host
    • Luschnig, C. & Bachmair, A. RNA packaging of yeast retrotransposon Ty1 in the heterologous host, Escherichia coli. Biol. Chem. 378, 39-46 (1997).
    • (1997) Escherichia coli. Biol. Chem , vol.378 , pp. 39-46
    • Luschnig, C.1    Bachmair, A.2
  • 90
    • 0033761179 scopus 로고    scopus 로고
    • The genomic RNA in Ty1 virus-like particles is dimeric
    • Feng, Y. X., Moore, S. P., Garfinkel, D. J. & Rein, A. The genomic RNA in Ty1 virus-like particles is dimeric. J. Virol. 74, 10819-10821 (2000).
    • (2000) J. Virol , vol.74 , pp. 10819-10821
    • Feng, Y.X.1    Moore, S.P.2    Garfinkel, D.J.3    Rein, A.4
  • 91
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 92
    • 0033852426 scopus 로고    scopus 로고
    • A contiguous 66 kb barley DNA sequence provides evidence for reversible genome expansion
    • Shirasu, K., Schulman, A. H., Lahaye, T. & Schulze-Lefert, P. A contiguous 66 kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res. 10, 908-915 (2000).
    • (2000) Genome Res , vol.10 , pp. 908-915
    • Shirasu, K.1    Schulman, A.H.2    Lahaye, T.3    Schulze-Lefert, P.4
  • 93
    • 34548131194 scopus 로고    scopus 로고
    • Template switching can create complex LTR retrotransposon insertions in Triticeae genomes
    • Sabot, F. & Schulman, A. Template switching can create complex LTR retrotransposon insertions in Triticeae genomes. BMC Genomics 8, 247 (2007).
    • (2007) BMC Genomics , vol.8 , pp. 247
    • Sabot, F.1    Schulman, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.