-
2
-
-
0026622006
-
Retroviral reverse transcription and integration: progress and problems
-
Whitcomb J.M., and Hughes S.H. Retroviral reverse transcription and integration: progress and problems. Annu. Rev. Cell Biol. 8 (1992) 275-306
-
(1992)
Annu. Rev. Cell Biol.
, vol.8
, pp. 275-306
-
-
Whitcomb, J.M.1
Hughes, S.H.2
-
3
-
-
85118513711
-
Ty1 and Ty5 of Sacharomyces cerevisiae
-
Craig N.L., Craigie R., Gellert M., and Lambowitz A.M. (Eds), American Society for Microbiology, Washington, DC
-
Voytas D.F., and Boeke J.D. Ty1 and Ty5 of Sacharomyces cerevisiae. In: Craig N.L., Craigie R., Gellert M., and Lambowitz A.M. (Eds). Mobile DNA II (2002), American Society for Microbiology, Washington, DC 631-662
-
(2002)
Mobile DNA II
, pp. 631-662
-
-
Voytas, D.F.1
Boeke, J.D.2
-
4
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
-
Luan D.D., Korman M.H., Jakubczak J.L., and Eickbush T.H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72 (1993) 595-605
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
5
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux M., Esnault C., and Heidmann T. LINE-mediated retrotransposition of marked Alu sequences. Nature Genet. 35 (2003) 41-48
-
(2003)
Nature Genet.
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
6
-
-
23844495159
-
LINEs, SINEs and processed pseudogenes: parasitic strategies for genome modeling
-
Dewannieux M., and Heidmann T. LINEs, SINEs and processed pseudogenes: parasitic strategies for genome modeling. Cytogenet. Genome Res. 110 (2005) 35-48
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 35-48
-
-
Dewannieux, M.1
Heidmann, T.2
-
7
-
-
0029058441
-
RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element
-
Luan D.D., and Eickbush T.H. RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element. Mol. Cell Biol. 15 (1995) 3882-3891
-
(1995)
Mol. Cell Biol.
, vol.15
, pp. 3882-3891
-
-
Luan, D.D.1
Eickbush, T.H.2
-
8
-
-
0033529244
-
Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements
-
Yang J., Malik H.S., and Eickbush T.H. Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements. Proc. Natl Acad. Sci. USA 96 (1999) 7847-7852
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 7847-7852
-
-
Yang, J.1
Malik, H.S.2
Eickbush, T.H.3
-
9
-
-
85158011569
-
R2 and related site-specific non-long terminal repeat retrotransposons
-
Craig N.L., Craigie R., Gellert M., and Lambowitz A.M. (Eds), American Society of Microbiology Press, Washington, DC
-
Eickbush T.H. R2 and related site-specific non-long terminal repeat retrotransposons. In: Craig N.L., Craigie R., Gellert M., and Lambowitz A.M. (Eds). Mobile DNA II (2002), American Society of Microbiology Press, Washington, DC 813-835
-
(2002)
Mobile DNA II
, pp. 813-835
-
-
Eickbush, T.H.1
-
10
-
-
33748803914
-
Identification of rDNA-specific non-LTR retrotransposons in Cnidaria
-
Kojima K.K., Kuma K., Toh H., and Fujiwara H. Identification of rDNA-specific non-LTR retrotransposons in Cnidaria. Mol. Biol. Evol. 23 (2006) 1984-1993
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1984-1993
-
-
Kojima, K.K.1
Kuma, K.2
Toh, H.3
Fujiwara, H.4
-
11
-
-
0036300893
-
The reverse transcriptase of the R2 non-LTR retrotransposon: continuous synthesis of cDNA on non-continuous RNA templates
-
Bibillo A., and Eickbush T.H. The reverse transcriptase of the R2 non-LTR retrotransposon: continuous synthesis of cDNA on non-continuous RNA templates. J. Mol. Biol. 316 (2002) 459-473
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 459-473
-
-
Bibillo, A.1
Eickbush, T.H.2
-
12
-
-
2442534197
-
End-to-end template jumping by the reverse transcriptase encoded by the R2 retrotransposon
-
Bibillo A., and Eickbush T.H. End-to-end template jumping by the reverse transcriptase encoded by the R2 retrotransposon. J. Biol. Chem. 279 (2004) 14945-14953
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 14945-14953
-
-
Bibillo, A.1
Eickbush, T.H.2
-
13
-
-
0037144568
-
High processivity of the reverse transcriptase from a non-long terminal repeat retrotransposon
-
Bibillo A., and Eickbush T.H. High processivity of the reverse transcriptase from a non-long terminal repeat retrotransposon. J. Biol. Chem. 277 (2002) 34836-34845
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 34836-34845
-
-
Bibillo, A.1
Eickbush, T.H.2
-
14
-
-
3543015532
-
Single unpaired nucleotides facilitate HIV-1 reverse transcriptase displacement synthesis through duplex RNA
-
Lanciault C., and Champoux J.J. Single unpaired nucleotides facilitate HIV-1 reverse transcriptase displacement synthesis through duplex RNA. J. Biol. Chem. 279 (2004) 32252-32261
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 32252-32261
-
-
Lanciault, C.1
Champoux, J.J.2
-
15
-
-
0034710973
-
Unique progressive cleavage mechanism of HIV reverse transcriptase RNase H
-
Wisniewski M., Balakrishnan M., Palaniappan C., Fay P.J., and Bambara R.A. Unique progressive cleavage mechanism of HIV reverse transcriptase RNase H. Proc. Natl Acad. Sci. USA 97 (2000) 11978-11983
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 11978-11983
-
-
Wisniewski, M.1
Balakrishnan, M.2
Palaniappan, C.3
Fay, P.J.4
Bambara, R.A.5
-
16
-
-
0032976398
-
The age and evolution of non-LTR retrotransposable elements
-
Malik H.S., Burke W.D., and Eickbush T.H. The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16 (1999) 793-805
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 793-805
-
-
Malik, H.S.1
Burke, W.D.2
Eickbush, T.H.3
-
17
-
-
0034917751
-
Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses
-
Malik H.S., and Eickbush T.H. Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res. 11 (2001) 1187-1197
-
(2001)
Genome Res.
, vol.11
, pp. 1187-1197
-
-
Malik, H.S.1
Eickbush, T.H.2
-
18
-
-
0032540293
-
Characterization of RNA strand displacement synthesis by Moloney Murine Leukemia virus reverse transcriptase
-
Kelleher C.D., and Champoux J.J. Characterization of RNA strand displacement synthesis by Moloney Murine Leukemia virus reverse transcriptase. J. Biol. Chem. 273 (1998) 9976-9986
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 9976-9986
-
-
Kelleher, C.D.1
Champoux, J.J.2
-
19
-
-
0024293991
-
Functional expression of a sequence-specific endonuclease encoded by the retrotransposon R2Bm
-
Xiong Y.E., and Eickbush T.H. Functional expression of a sequence-specific endonuclease encoded by the retrotransposon R2Bm. Cell 55 (1988) 235-246
-
(1988)
Cell
, vol.55
, pp. 235-246
-
-
Xiong, Y.E.1
Eickbush, T.H.2
-
20
-
-
22544486545
-
R2 target-primed reverse transcription: ordered cleavage and polymerization steps by protein subunits asymmetrically bound to the target DNA
-
Christensen S.M., and Eickbush T.H. R2 target-primed reverse transcription: ordered cleavage and polymerization steps by protein subunits asymmetrically bound to the target DNA. Mol. Cell Biol. 25 (2005) 6617-6628
-
(2005)
Mol. Cell Biol.
, vol.25
, pp. 6617-6628
-
-
Christensen, S.M.1
Eickbush, T.H.2
-
21
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran J.V., Holmes S.E., Nass P.T., DeBarardinis R.J., Boeke J.D., and Kazazian Jr. H.H. High frequency retrotransposition in cultured mammalian cells. Cell 87 (1996) 917-927
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Nass, P.T.3
DeBarardinis, R.J.4
Boeke, J.D.5
Kazazian Jr., H.H.6
-
22
-
-
0036847319
-
Human L1 element target-primed reverse transcription in vitro
-
Cost G.J., Feng Q., Jacquier A., and Boeke J.D. Human L1 element target-primed reverse transcription in vitro. EMBO J. 21 (2002) 5899-5910
-
(2002)
EMBO J.
, vol.21
, pp. 5899-5910
-
-
Cost, G.J.1
Feng, Q.2
Jacquier, A.3
Boeke, J.D.4
-
23
-
-
30644465699
-
DNA polymerization by the reverse transcriptase of the human L1 retrotransposon on its own template in vitro
-
Piskareva O., and Schmatchenko V. DNA polymerization by the reverse transcriptase of the human L1 retrotransposon on its own template in vitro. FEBS Letters 580 (2006) 661-668
-
(2006)
FEBS Letters
, vol.580
, pp. 661-668
-
-
Piskareva, O.1
Schmatchenko, V.2
-
24
-
-
0032496398
-
Properties of strand displacement synthesis by Moloney Murine Leukemia Virus reverse transcriptase: mechanistic implications
-
Whiting S.H., and Champoux J.J. Properties of strand displacement synthesis by Moloney Murine Leukemia Virus reverse transcriptase: mechanistic implications. J. Mol. Biol. 278 (1998) 559-577
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 559-577
-
-
Whiting, S.H.1
Champoux, J.J.2
-
25
-
-
11144238262
-
Requirements for DNA unpairing during displacement synthesis by HIV-1 reverse transcriptase
-
Winshell J., Paulson B.A., Buelow B.D., and Champoux J.J. Requirements for DNA unpairing during displacement synthesis by HIV-1 reverse transcriptase. J. Biol. Chem. 279 (2004) 52924-52933
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 52924-52933
-
-
Winshell, J.1
Paulson, B.A.2
Buelow, B.D.3
Champoux, J.J.4
-
26
-
-
0032571005
-
Insertions into the β3-β4 hairpin loop of HIV-1 reverse transcriptase reveal a role for fingers subdomain in processive polymerization
-
Kew Y., Olsen L., Japour A., and Prasad V.R. Insertions into the β3-β4 hairpin loop of HIV-1 reverse transcriptase reveal a role for fingers subdomain in processive polymerization. J. Biol. Chem. 273 (1998) 7529-7537
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 7529-7537
-
-
Kew, Y.1
Olsen, L.2
Japour, A.3
Prasad, V.R.4
-
27
-
-
0037229160
-
Substitutions at Phe61 in the beta3-beta4 hairpin of HIV-1 reverse transcriptase reveal a role for the Fingers subdomain in strand displacement DNA synthesis
-
Fisher T.S., Darden T., and Prasad V.R. Substitutions at Phe61 in the beta3-beta4 hairpin of HIV-1 reverse transcriptase reveal a role for the Fingers subdomain in strand displacement DNA synthesis. J. Mol. Biol. 325 (2003) 443-459
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 443-459
-
-
Fisher, T.S.1
Darden, T.2
Prasad, V.R.3
-
28
-
-
0032955930
-
The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods
-
Burke W.D., Malik H.S., Jones J.P., and Eickbush T.H. The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods. Mol. Biol. Evol. 16 (1999) 502-511
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 502-511
-
-
Burke, W.D.1
Malik, H.S.2
Jones, J.P.3
Eickbush, T.H.4
-
29
-
-
11144250864
-
Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase
-
Blocker F.J., Mohr G., Conlan L.H., Qi L., Belfort M., and Lambowitz A.M. Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase. RNA 11 (2005) 14-28
-
(2005)
RNA
, vol.11
, pp. 14-28
-
-
Blocker, F.J.1
Mohr, G.2
Conlan, L.H.3
Qi, L.4
Belfort, M.5
Lambowitz, A.M.6
-
30
-
-
0029162089
-
Group II intron mobility occurs by target DNA-primed reverse transcription
-
Zimmerly S., Guo H., Perlman P.S., and Lambowitz A.M. Group II intron mobility occurs by target DNA-primed reverse transcription. Cell 82 (1995) 545-554
-
(1995)
Cell
, vol.82
, pp. 545-554
-
-
Zimmerly, S.1
Guo, H.2
Perlman, P.S.3
Lambowitz, A.M.4
-
31
-
-
26944475584
-
Recruitment of host functions suggests a repair pathway for late steps in group II intron retrohoming
-
Smith D., Zhong J., Matsuura M., Lambowitz A.M., and Belfort M. Recruitment of host functions suggests a repair pathway for late steps in group II intron retrohoming. Genes Dev. 19 (2005) 2477-2487
-
(2005)
Genes Dev.
, vol.19
, pp. 2477-2487
-
-
Smith, D.1
Zhong, J.2
Matsuura, M.3
Lambowitz, A.M.4
Belfort, M.5
-
32
-
-
0037698985
-
RecBCD enzyme is a DNA helicase with fast and slow motors of opposite polarity
-
Taylor A.F., and Smith G.R. RecBCD enzyme is a DNA helicase with fast and slow motors of opposite polarity. Nature 423 (2003) 889-893
-
(2003)
Nature
, vol.423
, pp. 889-893
-
-
Taylor, A.F.1
Smith, G.R.2
-
33
-
-
0031003554
-
Multimerization of the adenovirus DNA-binding protein is the driving force for ATP-independent DNA unwinding during strand displacement synthesis
-
Dekker J., Kanellopoulos P.N., Loonstra A.K., van Oosterhout J.A., Leonard K., Tucker P.A., and van der Vliet P.C. Multimerization of the adenovirus DNA-binding protein is the driving force for ATP-independent DNA unwinding during strand displacement synthesis. EMBO J. 16 (1997) 1455-1463
-
(1997)
EMBO J.
, vol.16
, pp. 1455-1463
-
-
Dekker, J.1
Kanellopoulos, P.N.2
Loonstra, A.K.3
van Oosterhout, J.A.4
Leonard, K.5
Tucker, P.A.6
van der Vliet, P.C.7
-
34
-
-
8844274078
-
Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29
-
Kamtekar S., Berman A.J., Wang J., Lazaro J.M., de Vega M., Blanco L., et al. Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29. Mol. Cell. 16 (2004) 609-618
-
(2004)
Mol. Cell.
, vol.16
, pp. 609-618
-
-
Kamtekar, S.1
Berman, A.J.2
Wang, J.3
Lazaro, J.M.4
de Vega, M.5
Blanco, L.6
-
35
-
-
0028135563
-
Purification and characterization of PRD1 DNA polymerase
-
Zhu W., and Ito J. Purification and characterization of PRD1 DNA polymerase. Biochim. Biophys. Acta 1219 (1994) 267-276
-
(1994)
Biochim. Biophys. Acta
, vol.1219
, pp. 267-276
-
-
Zhu, W.1
Ito, J.2
-
36
-
-
0017255078
-
Characterization of DNA polymerase induced by bacteriophage T5 with DNA containing single strand breaks
-
Fujimura R.K., and Roop B.C. Characterization of DNA polymerase induced by bacteriophage T5 with DNA containing single strand breaks. J. Biol. Chem. 251 (1976) 2168-2174
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 2168-2174
-
-
Fujimura, R.K.1
Roop, B.C.2
-
37
-
-
0024335104
-
Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication
-
Blanco L., Bernad A., Lazaro J.M., Martin G., Garmendia C., and Salas M. Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication. J. Biol. Chem. 264 (1989) 8935-8940
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 8935-8940
-
-
Blanco, L.1
Bernad, A.2
Lazaro, J.M.3
Martin, G.4
Garmendia, C.5
Salas, M.6
-
38
-
-
29144536663
-
Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction
-
Christensen S.M., Bibillo A., and Eickbush T.H. Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction. Nucl. Acids Res. 33 (2005) 6461-6468
-
(2005)
Nucl. Acids Res.
, vol.33
, pp. 6461-6468
-
-
Christensen, S.M.1
Bibillo, A.2
Eickbush, T.H.3
-
39
-
-
33845200930
-
RNA from the 5′end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site
-
Christensen S.M., Ye J., and Eickbush T.H. RNA from the 5′end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site. Proc. Natl Acad. Sci. USA 103 (2006) 17602-17607
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 17602-17607
-
-
Christensen, S.M.1
Ye, J.2
Eickbush, T.H.3
|