메뉴 건너뛰기




Volumn 21, Issue 21, 2002, Pages 5899-5910

Human L1 element target-primed reverse transcription in vitro

Author keywords

Genome evolution; Human genome; Retroelement; Retrotransposon

Indexed keywords

COMPLEMENTARY DNA; DNA; ENDONUCLEASE; GUANOSINE DERIVATIVE; POLYGUANOSINE; PROTEIN ORF2; RNA; UNCLASSIFIED DRUG;

EID: 0036847319     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/cdf592     Document Type: Article
Times cited : (418)

References (52)
  • 1
    • 0036300893 scopus 로고    scopus 로고
    • The reverse transcriptase of the R2 non-LTR retrotransposon: Continuous synthesis of cDNA on noncontinuous RNA templates
    • Bibillo, A. and Eickbush, T.H. (2002) The reverse transcriptase of the R2 non-LTR retrotransposon: Continuous synthesis of cDNA on noncontinuous RNA templates. J. Mol. Biol., 316, 459-473.
    • (2002) J. Mol. Biol. , vol.316 , pp. 459-473
    • Bibillo, A.1    Eickbush, T.H.2
  • 2
    • 0031135862 scopus 로고    scopus 로고
    • LINEs and Alus: The polyA connection
    • Boeke, J.D. (1997) LINEs and Alus: The polyA connection. Nat. Genet., 16, 6-7.
    • (1997) Nat. Genet. , vol.16 , pp. 6-7
    • Boeke, J.D.1
  • 3
    • 0002075936 scopus 로고    scopus 로고
    • Retrotransposons, endogenous retroviruses and the evolution of retroelements
    • Coffin, J.M., Hughes, S.H. and Varmus, H.E. (eds). Cold Spring Harbor Laboratory Press, Plainview, NY
    • Boeke, J.D. and Stoye, J.P. (1997) Retrotransposons, endogenous retroviruses and the evolution of retroelements. In Coffin, J.M., Hughes, S.H. and Varmus, H.E. (eds), Retroviruses. Cold Spring Harbor Laboratory Press, Plainview, NY, pp. 343-435.
    • (1997) Retroviruses , pp. 343-435
    • Boeke, J.D.1    Stoye, J.P.2
  • 4
    • 0034983677 scopus 로고    scopus 로고
    • Selection against deleterious line-1-containing loci in the human lineage
    • Boissinot, S., Entezam, A. and Furano, A.V. (2001) Selection against deleterious line-1-containing loci in the human lineage. Mol. Biol. Evol., 18, 926-935.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 926-935
    • Boissinot, S.1    Entezam, A.2    Furano, A.V.3
  • 5
    • 0034235829 scopus 로고    scopus 로고
    • Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3′ end
    • Chaboissier, M.C., Finnegan, D. and Bucheton, A. (2000) Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3′ end. Nucleic Acids Res., 28, 2467-2472.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2467-2472
    • Chaboissier, M.C.1    Finnegan, D.2    Bucheton, A.3
  • 6
    • 0037086701 scopus 로고    scopus 로고
    • CCR4, a 3′-5′ poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase
    • Chen, J., Chiang, Y.C. and Denis, C. (2002) CCR4, a 3′-5′ poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase. EMBO J., 21, 1414-1426.
    • (2002) EMBO J. , vol.21 , pp. 1414-1426
    • Chen, J.1    Chiang, Y.C.2    Denis, C.3
  • 7
    • 0027967005 scopus 로고
    • A mitochondrial retroplasmid integrates into mitochondrial DNA by a novel mechanism involving the synthesis of a hybrid cDNA and homologous recombination
    • Chiang, C.C., Kennell, J.C., Wanner, L.A. and Lambowitz, A.M. (1994) A mitochondrial retroplasmid integrates into mitochondrial DNA by a novel mechanism involving the synthesis of a hybrid cDNA and homologous recombination. Mol. Cell. Biol., 14, 6419-6432.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 6419-6432
    • Chiang, C.C.1    Kennell, J.C.2    Wanner, L.A.3    Lambowitz, A.M.4
  • 8
    • 0027275438 scopus 로고
    • Tetrahymena telomerase catalyzes nucleolytic cleavage and nonprocessive elongation
    • Collins, K. and Greider, C.W. (1993) Tetrahymena telomerase catalyzes nucleolytic cleavage and nonprocessive elongation. Genes Dev., 7, 1364-1376.
    • (1993) Genes Dev. , vol.7 , pp. 1364-1376
    • Collins, K.1    Greider, C.W.2
  • 9
    • 0032559061 scopus 로고    scopus 로고
    • Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
    • Cost, G.J. and Boeke, J.D. (1998) Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry, 37, 18081-18093.
    • (1998) Biochemistry , vol.37 , pp. 18081-18093
    • Cost, G.J.1    Boeke, J.D.2
  • 10
    • 0035863793 scopus 로고    scopus 로고
    • Target DNA chromatinization modulates nicking by L1 endonuclease
    • Cost, G.J., Golding, A., Schlissel, M.S. and Boeke, J.D. (2001) Target DNA chromatinization modulates nicking by L1 endonuclease. Nucleic Acids Res., 29, 573-577.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 573-577
    • Cost, G.J.1    Golding, A.2    Schlissel, M.S.3    Boeke, J.D.4
  • 12
    • 0030848018 scopus 로고    scopus 로고
    • Telomerase and retrotransposons: Which came first?
    • Eickbush, T.H. (1997) Telomerase and retrotransposons: Which came first? Science, 277, 911-912.
    • (1997) Science , vol.277 , pp. 911-912
    • Eickbush, T.H.1
  • 13
    • 0033525907 scopus 로고    scopus 로고
    • Exon shuffling in retrospect
    • Eickbush, T. (1999) Exon shuffling in retrospect. Science, 283, 1465-1467.
    • (1999) Science , vol.283 , pp. 1465-1467
    • Eickbush, T.1
  • 14
    • 0034079713 scopus 로고    scopus 로고
    • Human LINE retrotransposons generate processed pseudogenes
    • Esnault, C., Maestre, J. and Heidmann, T. (2000) Human LINE retrotransposons generate processed pseudogenes. Nat. Genet., 24, 363-367.
    • (2000) Nat. Genet. , vol.24 , pp. 363-367
    • Esnault, C.1    Maestre, J.2    Heidmann, T.3
  • 15
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng, Q., Moran, J., Kazazian, H. and Boeke, J.D. (1996) Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell, 87, 905-916.
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.2    Kazazian, H.3    Boeke, J.D.4
  • 16
    • 0033631415 scopus 로고    scopus 로고
    • The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons
    • Furano, A.V. (2000) The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons. Prog. Nucleic Acid Res. Mol. Biol., 64, 255-294.
    • (2000) Prog. Nucleic Acid Res. Mol. Biol. , vol.64 , pp. 255-294
    • Furano, A.V.1
  • 17
    • 0037047355 scopus 로고    scopus 로고
    • Genomic deletions created upon LINE-1 retrotransposition
    • Gilbert, N., Prigge, S.L. and Moran, J.V. (2002) Genomic deletions created upon LINE-1 retrotransposition. Cell, 110, 315-325.
    • (2002) Cell , vol.110 , pp. 315-325
    • Gilbert, N.1    Prigge, S.L.2    Moran, J.V.3
  • 18
    • 0030042251 scopus 로고    scopus 로고
    • Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA
    • Hohjoh, H. and Singer, M.F. (1996) Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA. EMBO J., 15, 630-639.
    • (1996) EMBO J. , vol.15 , pp. 630-639
    • Hohjoh, H.1    Singer, M.F.2
  • 19
    • 0030870342 scopus 로고    scopus 로고
    • Sequence-specific single strand RNA binding protein encoded by the human LINE-1 retrotransposon
    • Hohjoh, H. and Singer, M.F. (1997) Sequence-specific single strand RNA binding protein encoded by the human LINE-1 retrotransposon. EMBO J., 16, 6034-6043.
    • (1997) EMBO J. , vol.16 , pp. 6034-6043
    • Hohjoh, H.1    Singer, M.F.2
  • 20
    • 0033118355 scopus 로고    scopus 로고
    • Functional requirement of p23 and Hsp90 in telomerase complexes
    • Holt, S.E. et al. (1999) Functional requirement of p23 and Hsp90 in telomerase complexes. Genes Dev., 13, 817-826.
    • (1999) Genes Dev. , vol.13 , pp. 817-826
    • Holt, S.E.1
  • 21
    • 0020488547 scopus 로고
    • Poly(inosinic acid) helices: Essential chelation of alkali metal ions in the axial channel
    • Howard, F.B. and Miles, H.T. (1982) Poly(inosinic acid) helices: Essential chelation of alkali metal ions in the axial channel. Biochemistry, 21, 6736-6745.
    • (1982) Biochemistry , vol.21 , pp. 6736-6745
    • Howard, F.B.1    Miles, H.T.2
  • 23
    • 0031038702 scopus 로고    scopus 로고
    • The ability to form intrastrand tetraplexes is an evolutionarily conserved feature of the 3′ end of L1 retrotransposons
    • Howell, R. and Usdin, K. (1997) The ability to form intrastrand tetraplexes is an evolutionarily conserved feature of the 3′ end of L1 retrotransposons. Mol. Biol. Evol., 14, 144-155.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 144-155
    • Howell, R.1    Usdin, K.2
  • 24
    • 0002110973 scopus 로고
    • LINEs and related retroposons: Long interspersed repeated sequences in the eucaryotic genome
    • Berg, D.E. and Howe, M.M. (eds). American Society of Microbiology, Washington, DC
    • Hutchison, C.A., III, Hardies, S.C., Loeb, D.D., Shehee, W.R. and Edgell, M.H. (1989) LINEs and related retroposons: Long interspersed repeated sequences in the eucaryotic genome. In Berg, D.E. and Howe, M.M. (eds), Mobile DNA. American Society of Microbiology, Washington, DC, pp. 593-617.
    • (1989) Mobile DNA , pp. 593-617
    • Hutchison, C.A.1    Hardies, S.C.2    Loeb, D.D.3    Shehee, W.R.4    Edgell, M.H.5
  • 25
    • 0031055331 scopus 로고    scopus 로고
    • Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
    • Jurka, J. (1997) Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Proc. Natl. Acad. Sci. USA, 94, 1872-1877.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1872-1877
    • Jurka, J.1
  • 26
    • 0027412217 scopus 로고
    • RNA polymerase marching backward
    • Kassavetis, G.A. and Geiduschek, E.P. (1993) RNA polymerase marching backward. Science, 259, 944-945.
    • (1993) Science , vol.259 , pp. 944-945
    • Kassavetis, G.A.1    Geiduschek, E.P.2
  • 27
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • Kazazian, H.H., Jr and Moran, J.V. (1998) The impact of L1 retrotransposons on the human genome. Nat. Genet., 19, 19-24.
    • (1998) Nat. Genet. , vol.19 , pp. 19-24
    • Kazazian, H.H.1    Moran, J.V.2
  • 28
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E.S. et al. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 29
    • 0031573447 scopus 로고    scopus 로고
    • Site-specific retrotransposition of L1 elements within human alphoid satellite sequences
    • Laurent, A.M., Puechberty, J., Prades, C., Gimenez, S. and Roizes, G. (1997) Site-specific retrotransposition of L1 elements within human alphoid satellite sequences. Genomics, 46, 127-132.
    • (1997) Genomics , vol.46 , pp. 127-132
    • Laurent, A.M.1    Puechberty, J.2    Prades, C.3    Gimenez, S.4    Roizes, G.5
  • 30
    • 0029058441 scopus 로고
    • RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element
    • Luan, D.D. and Eickbush, T.H. (1995) RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element. Mol. Cell. Biol., 15, 3882-3891.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 3882-3891
    • Luan, D.D.1    Eickbush, T.H.2
  • 31
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • Luan, D.D., Korman, M.H., Jakubczak, J.L. and Eickbush, T.H. (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition. Cell, 72, 595-605.
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 32
    • 0026516772 scopus 로고
    • Allelic dimorphism in the human tissue-type plasminogen activator (TPA) gene as a result of an Alu insertion/deletion event
    • Ludwig, M., Wohn, K.D., Schleuning, W.D. and Olek, K. (1992) Allelic dimorphism in the human tissue-type plasminogen activator (TPA) gene as a result of an Alu insertion/deletion event. Hum. Genet., 88, 388-392.
    • (1992) Hum. Genet. , vol.88 , pp. 388-392
    • Ludwig, M.1    Wohn, K.D.2    Schleuning, W.D.3    Olek, K.4
  • 33
    • 0032976398 scopus 로고    scopus 로고
    • The age and evolution of non-LTR retrotransposable elements
    • Malik, H.S., Burke, W.D. and Eickbush, T.H. (1999) The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol., 16, 793-805.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 793-805
    • Malik, H.S.1    Burke, W.D.2    Eickbush, T.H.3
  • 34
    • 0035163939 scopus 로고    scopus 로고
    • Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
    • Martin, S.L. and Bushman, F.D. (2001) Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol. Cell. Biol., 21, 467-475.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 467-475
    • Martin, S.L.1    Bushman, F.D.2
  • 35
    • 0034680599 scopus 로고    scopus 로고
    • Deletion analysis defines distinct functional domains for protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1
    • Martin, S.L., Li, J. and Weisz, J.A. (2000) Deletion analysis defines distinct functional domains for protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1. J. Mol. Biol., 304, 11-20.
    • (2000) J. Mol. Biol. , vol.304 , pp. 11-20
    • Martin, S.L.1    Li, J.2    Weisz, J.A.3
  • 36
    • 0031014702 scopus 로고    scopus 로고
    • Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element
    • Mathews, D.H., Banerjee, A.R., Luan, D.D., Eickbush, T.H. and Turner, D.H. (1997) Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. RNA, 3, 1-16.
    • (1997) RNA , vol.3 , pp. 1-16
    • Mathews, D.H.1    Banerjee, A.R.2    Luan, D.D.3    Eickbush, T.H.4    Turner, D.H.5
  • 37
    • 0026428975 scopus 로고
    • Reverse transcriptase encoded by a human retrotransposon
    • Mathias, S.L., Scott, A.F., Kazazian, H.H., Jr, Boeke, J.D. and Gabriel, A. (1991) Reverse transcriptase encoded by a human retrotransposon. Science, 254, 1808-1810.
    • (1991) Science , vol.254 , pp. 1808-1810
    • Mathias, S.L.1    Scott, A.F.2    Kazazian, H.H.3    Boeke, J.D.4    Gabriel, A.5
  • 38
    • 0001885636 scopus 로고
    • Illegitimate recombination in mammalian cells
    • Berg, D.E. and Howe, M.M. (eds). American Society of Microbiology, Washington, DC
    • Meuth, M. (1989) Illegitimate recombination in mammalian cells. In Berg, D.E. and Howe, M.M. (eds), Mobile DNA. American Society of Microbiology, Washington, DC, pp. 833-860.
    • (1989) Mobile DNA , pp. 833-860
    • Meuth, M.1
  • 39
    • 0024819449 scopus 로고
    • Synthesis of small RNAs using T7 RNA polymerase
    • Milligan, J.F. and Uhlenbeck, O.C. (1989) Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol., 180, 51-62.
    • (1989) Methods Enzymol. , vol.180 , pp. 51-62
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 41
    • 0033525586 scopus 로고    scopus 로고
    • Exon shuffling by L1 retrotransposition
    • Moran, J.V., DeBerardinis, R.J. and Kazazian, H.H., Jr (1999) Exon shuffling by L1 retrotransposition. Science, 283, 1530-1534.
    • (1999) Science , vol.283 , pp. 1530-1534
    • Moran, J.V.1    DeBerardinis, R.J.2    Kazazian, H.H.3
  • 43
    • 0035674903 scopus 로고    scopus 로고
    • Biology of mammalian retrotransposons
    • Ostertag, E.M. and Kazazian, H.H., Jr (2001a) Biology of mammalian retrotransposons. Ann. Rev. Genet., 35, 501-538.
    • (2001) Ann. Rev. Genet. , vol.35 , pp. 501-538
    • Ostertag, E.M.1    Kazazian, H.H.2
  • 44
    • 0035208118 scopus 로고    scopus 로고
    • Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition
    • Ostertag, E.M. and Kazazian, H.H., Jr (2001b) Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition. Genome Res., 11, 2059-2065.
    • (2001) Genome Res. , vol.11 , pp. 2059-2065
    • Ostertag, E.M.1    Kazazian, H.H.2
  • 46
    • 0030479536 scopus 로고    scopus 로고
    • The origin of interspersed repeats in the human genome
    • Smit, A.F.A. (1996) The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev., 6, 743-748.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 743-748
    • Smit, A.F.A.1
  • 49
    • 0029975794 scopus 로고    scopus 로고
    • Retrotransposon reverse transcriptase-mediated repair of chromosomal breaks
    • Teng, S.C., Kim, B. and Gabriel, A. (1996) Retrotransposon reverse transcriptase-mediated repair of chromosomal breaks. Nature, 383, 641-644.
    • (1996) Nature , vol.383 , pp. 641-644
    • Teng, S.C.1    Kim, B.2    Gabriel, A.3
  • 51
    • 0025006614 scopus 로고
    • Origin and evolution of retroelements based upon their reverse transcriptase sequences
    • Xiong, Y. and Eickbush, T.H. (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J., 9, 3353-3362.
    • (1990) EMBO J. , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.H.2
  • 52
    • 0033529244 scopus 로고    scopus 로고
    • Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements
    • Yang, J., Malik, H.S. and Eickbush, T.H. (1999) Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements. Proc. Natl. Acad. Sci. USA, 96, 7847-7852.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 7847-7852
    • Yang, J.1    Malik, H.S.2    Eickbush, T.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.