-
1
-
-
0028111862
-
-
For reviews covering methods for increasing the thermostability of enzymes, see: a) T. Oshima, Curr. Opin. Struct. Biol. 1994, 4, 623-628;
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 623-628
-
-
Oshima, T.1
-
4
-
-
4544244867
-
-
d) V. G. H. Eijsink, A. Bjørk, S. Gåseidnes, R. Sirevåg, B. Synstad, B. van den Burg, G. Vriend, J. Biotechnol. 2004, 113, 105-120;
-
(2004)
J. Biotechnol.
, vol.113
, pp. 105-120
-
-
Eijsink, V.G.H.1
Bjørk, A.2
Gåseidnes, S.3
Sirevåg, R.4
Synstad, B.5
Van Den Burg, B.6
Vriend, G.7
-
5
-
-
18044369861
-
-
e) V. G. H. Eijsink, S. Gåseidnes, T. V. Borchert, B. van den Burg, Biomol. Eng. 2005, 22, 21-30;
-
(2005)
Biomol. Eng.
, vol.22
, pp. 21-30
-
-
Eijsink, V.G.H.1
Gåseidnes, S.2
Borchert, T.V.3
Van Den Burg, B.4
-
6
-
-
0346492908
-
-
f) N. S. Wingreen, H. Li, C. Tang, Polymer 2004, 45, 699-705;
-
(2004)
Polymer
, vol.45
, pp. 699-705
-
-
Wingreen, N.S.1
Li, H.2
Tang, C.3
-
7
-
-
30144442468
-
-
g) V. Renugopalakrishnan, R. Garduño-Juárez, G. Narasimhan, C. S. Verma, X. Wei, P. Li, J. Nanosci. Nanotechnol. 2005, 5, 1759-1767;
-
(2005)
J. Nanosci. Nanotechnol.
, vol.5
, pp. 1759-1767
-
-
Renugopalakrishnan, V.1
Garduño-Juárez, R.2
Narasimhan, G.3
Verma, C.S.4
Wei, X.5
Li, P.6
-
10
-
-
0032936541
-
-
b) T. Matsuura, K. Miyai, S. Trakulnaleamsai, T. Yomo, Y. Shima, S. Miki, K. Yamamoto, I. Urabe, Nat. Biotechnol. 1999, 17, 58-61;
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 58-61
-
-
Matsuura, T.1
Miyai, K.2
Trakulnaleamsai, S.3
Yomo, T.4
Shima, Y.5
Miki, S.6
Yamamoto, K.7
Urabe, I.8
-
11
-
-
0035821038
-
-
c) J.-H. Liu, C.-F. Tsai, J.-W. Liu, K.-J. Cheng, C.-L. Cheng, Enzyme Microb. Technol. 2001, 28, 582-589;
-
(2001)
Enzyme Microb. Technol.
, vol.28
, pp. 582-589
-
-
Liu, J.-H.1
Tsai, C.-F.2
Liu, J.-W.3
Cheng, K.-J.4
Cheng, C.-L.5
-
14
-
-
0035207365
-
-
a) R. Brugger, A. Kronenberger, A. Bischoff, D. Hug, M. Lehmann, A. P. G. M. van Loon, M. Wyss, Biocatal. Biotransform. 2001, 19, 505-516;
-
(2001)
Biocatal. Biotransform.
, vol.19
, pp. 505-516
-
-
Brugger, R.1
Kronenberger, A.2
Bischoff, A.3
Hug, D.4
Lehmann, M.5
Van Loon, A.P.G.M.6
Wyss, M.7
-
15
-
-
0032079472
-
-
b) C. Bieniarz, M. J. Cornwell, D. F. Young, Bioconjugate Chem. 1998, 9, 390-398;
-
(1998)
Bioconjugate Chem.
, vol.9
, pp. 390-398
-
-
Bieniarz, C.1
Cornwell, M.J.2
Young, D.F.3
-
16
-
-
0343362700
-
-
c) L. Gómez, H. L. Ramirez, R. Villalonga, Biotechnol. Lett. 2000, 22, 347-350;
-
(2000)
Biotechnol. Lett.
, vol.22
, pp. 347-350
-
-
Gómez, L.1
Ramirez, H.L.2
Villalonga, R.3
-
17
-
-
0035810275
-
-
d) K. Khajeh, H. Naderi-Manesh, B. Ranjbar, A. Moosavi-Movahedi, M. Nemat-Gorgani, Enzyme Microb. Technol. 2001, 28, 543-549;
-
(2001)
Enzyme Microb. Technol.
, vol.28
, pp. 543-549
-
-
Khajeh, K.1
Naderi-Manesh, H.2
Ranjbar, B.3
Moosavi-Movahedi, A.4
Nemat-Gorgani, M.5
-
19
-
-
79955048698
-
Immobilization of Enzymes and Cells
-
3rd ed. (Ed.: J. M. Guisan), Humana, Totowa
-
"Immobilization of Enzymes and Cells": Methods in Biotechnology, Vol. 22, 3rd ed. (Ed.: J. M. Guisan), Humana, Totowa, 2006.
-
(2006)
Methods in Biotechnology
, vol.22
-
-
-
20
-
-
0023793010
-
-
For typical examples, see
-
For typical examples, see: a) R. S. Stearman, A. D. Frankel, E. Freire, B. Liu, C. O. Pabo, Biochemistry 1988, 27, 7571-7574;
-
(1988)
Biochemistry
, vol.27
, pp. 7571-7574
-
-
Stearman, R.S.1
Frankel, A.D.2
Freire, E.3
Liu, B.4
Pabo, C.O.5
-
21
-
-
0032478082
-
-
b) B. van den Burg, G. Vriend, O. R. Veltman, G. Venema, V. G. H. Eijsink, Proc. Natl. Acad. Sci. USA 1998, 95, 2056-2060;
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 2056-2060
-
-
Van Den Burg, B.1
Vriend, G.2
Veltman, O.R.3
Venema, G.4
Eijsink, V.G.H.5
-
22
-
-
0027441807
-
-
c) L. Serrano, A. G. Day, A. R. Fersht, J. Mol. Biol. 1993, 233, 305-312;
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 305-312
-
-
Serrano, L.1
Day, A.G.2
Fersht, A.R.3
-
23
-
-
28344442808
-
-
d) H. Kaneko, H. Minagawa, J. Shimada, Biotechnol. Lett. 2005, 27, 1777-1784;
-
(2005)
Biotechnol. Lett.
, vol.27
, pp. 1777-1784
-
-
Kaneko, H.1
Minagawa, H.2
Shimada, J.3
-
24
-
-
2442648751
-
-
e) S. Nishikori, K. Shiraki, K. Yokota, N. Izumikawa, S. Fujiwara, H. Hashimoto, T. Imanaka, M. Takagi, J. Biochem. 2004, 135, 525-532;
-
(2004)
J. Biochem.
, vol.135
, pp. 525-532
-
-
Nishikori, S.1
Shiraki, K.2
Yokota, K.3
Izumikawa, N.4
Fujiwara, S.5
Hashimoto, H.6
Imanaka, T.7
Takagi, M.8
-
25
-
-
33746274673
-
-
f) W.-C. Chiu, J.-Y. You, J.-S. Liu, S.-K. Hsu, W. H. Hsu, C.-H. Shih, J.-K. Hwang, W.-C. Wang, J. Mol. Biol. 2006, 359, 741-753;
-
(2006)
J. Mol. Biol.
, vol.359
, pp. 741-753
-
-
Chiu, W.-C.1
You, J.-Y.2
Liu, J.-S.3
Hsu, S.-K.4
Hsu, W.H.5
Shih, C.-H.6
Hwang, J.-K.7
Wang, W.-C.8
-
26
-
-
1842366730
-
-
g) M. H. Hecht, J. M. Sturtevant, R. T. Sauer, Proc. Natl. Acad. Sci. USA 1984, 81, 5685-5689;
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 5685-5689
-
-
Hecht, M.H.1
Sturtevant, J.M.2
Sauer, R.T.3
-
27
-
-
0022538679
-
-
h) M. Matsumura, S. Yasumura, S. Aiba, Nature 1986, 323, 356-358.
-
(1986)
Nature
, vol.323
, pp. 356-358
-
-
Matsumura, M.1
Yasumura, S.2
Aiba, S.3
-
33
-
-
0031467464
-
-
f) T. Lazaridis, I. Lee, M. Karplus, Protein Sci. 1997, 6, 2589-2605;
-
(1997)
Protein Sci.
, vol.6
, pp. 2589-2605
-
-
Lazaridis, T.1
Lee, I.2
Karplus, M.3
-
36
-
-
0035313249
-
-
i) D. C. Demirjian, F. Morís-Varas, C. S. Cassidy, Curr. Opin. Chem. Biol. 2001, 5, 144-151;
-
(2001)
Curr. Opin. Chem. Biol.
, vol.5
, pp. 144-151
-
-
Demirjian, D.C.1
Morís-Varas, F.2
Cassidy, C.S.3
-
39
-
-
0031580199
-
-
l) G. Vogt, S. Woell, P. Argos, J. Mol. Biol. 1997, 269, 631-643;
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 631-643
-
-
Vogt, G.1
Woell, S.2
Argos, P.3
-
40
-
-
84889863672
-
-
(Eds.: J. Buchner, T. Kiefhaber), Wiley-VCH, Weinheim
-
m) Protein Folding Handbook, (Eds.: J. Buchner, T. Kiefhaber), Wiley-VCH, Weinheim, 2005.
-
(2005)
Protein Folding Handbook
-
-
-
41
-
-
18244373419
-
-
a) A. Korkegian, M. E. Black, D. Baker, B. L. Stoddard, Science 2005, 308, 857-860;
-
(2005)
Science
, vol.308
, pp. 857-860
-
-
Korkegian, A.1
Black, M.E.2
Baker, D.3
Stoddard, B.L.4
-
43
-
-
28844434252
-
-
c) D. T. Kamei, B. J. Lao, M. Speed Ricci, R. Deshpande, H. Xu, B. Tidor, D. A. Lauffenburger, Biotechnol. Bioeng. 2005, 92, 748-760;
-
(2005)
Biotechnol. Bioeng.
, vol.92
, pp. 748-760
-
-
Kamei, D.T.1
Lao, B.J.2
Speed Ricci, M.3
Deshpande, R.4
Xu, H.5
Tidor, B.6
Lauffenburger, D.A.7
-
44
-
-
33646398358
-
-
d) T. Wang, H. Zhu, X. Ma, Y. Ma, D. Wei, Protein Pept. Lett. 2006, 13, 177-183.
-
(2006)
Protein Pept. Lett.
, vol.13
, pp. 177-183
-
-
Wang, T.1
Zhu, H.2
Ma, X.3
Ma, Y.4
Wei, D.5
-
45
-
-
4544334985
-
-
(Eds.: F. H. Arnold, G. Georgiou), Humana, Totowa, NJ
-
a) Methods and Molecular Biology, Vol. 230 (Directed Enzyme Evolution: Screening and Selection Methods), (Eds.: F. H. Arnold, G. Georgiou), Humana, Totowa, NJ, 2003;
-
(2003)
Methods and Molecular Biology, Vol. 230 (Directed Enzyme Evolution: Screening and Selection Methods)
-
-
-
46
-
-
0001739247
-
-
b) S. V. Taylor, P. Kast, D. Hilvert, Angew. Chem. 2001, 113, 3408-3436;
-
(2001)
Angew. Chem.
, vol.113
, pp. 3408-3436
-
-
Taylor, S.V.1
Kast, P.2
Hilvert, D.3
-
47
-
-
0035903602
-
-
Angew. Chem. Int. Ed. 2001, 40, 3310-3335;
-
(2001)
Angew. Chem. Int. Ed.
, vol.40
, pp. 3310-3335
-
-
-
48
-
-
0001179397
-
-
c) K. A. Powell, S. W. Ramer, S. B. del Cardayré, W. P. C. Stemmer, M. B. Tobin, P. F. Longchamp, G. W. Huisman, Angew. Chem. 2001, 113, 4068-4080;
-
(2001)
Angew. Chem.
, vol.113
, pp. 4068-4080
-
-
Powell, K.A.1
Ramer, S.W.2
Del Cardayré, S.B.3
Stemmer, W.P.C.4
Tobin, M.B.5
Longchamp, P.F.6
Huisman, G.W.7
-
49
-
-
0035813878
-
-
Angew. Chem. Int. Ed. 2001, 40, 3948-3959;
-
(2001)
Angew. Chem. Int. Ed.
, vol.40
, pp. 3948-3959
-
-
-
52
-
-
0342367772
-
-
Typical examples: a) H. Liao, T. McKenzie, R. Hageman, Proc. Natl. Acad. Sci. USA 1986, 83, 576-580;
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 576-580
-
-
Liao, H.1
McKenzie, T.2
Hageman, R.3
-
54
-
-
0001121864
-
-
c) K. A. Gray, T. H. Richardson, K. Kretz, J. M. Short, F. Bartnek, R. Knowles, L. Kan, P. E. Swanson, D. E. Robertson, Adv. Synth. Catal. 2001, 343, 607-617;
-
(2001)
Adv. Synth. Catal.
, vol.343
, pp. 607-617
-
-
Gray, K.A.1
Richardson, T.H.2
Kretz, K.3
Short, J.M.4
Bartnek, F.5
Knowles, R.6
Kan, L.7
Swanson, P.E.8
Robertson, D.E.9
-
55
-
-
0141888974
-
-
(Eds.: F. H. Arnold, D. Georgiou), Humana, Totowa, NJ
-
d) A. Martin, F. X. Schmid, V. Sieber in Methods in Molecular Biology, Vol. 230 (Directed Enzyme Evolution: Screening and Selection Methods) (Eds.: F. H. Arnold, D. Georgiou), Humana, Totowa, NJ, 2003, pp. 57-70;
-
(2003)
Methods in Molecular Biology, Vol. 230 (Directed Enzyme Evolution: Screening and Selection Methods)
, pp. 57-70
-
-
Martin, A.1
Schmid, F.X.2
Sieber, V.3
-
56
-
-
4143110558
-
-
e) P. Acharya, E. Rajakumara, R. Sankaranarayanan, N. M. Rao, J. Mol. Biol. 2004, 341, 1271-1281;
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 1271-1281
-
-
Acharya, P.1
Rajakumara, E.2
Sankaranarayanan, R.3
Rao, N.M.4
-
57
-
-
33344465082
-
-
f) S. Xu, J. Ju, H. Misono, K. Ohnishi, Gene 2006, 368, 126-137;
-
(2006)
Gene
, vol.368
, pp. 126-137
-
-
Xu, S.1
Ju, J.2
Misono, H.3
Ohnishi, K.4
-
58
-
-
0027033801
-
-
g) P. Joyet, N. Declerck, C. Gaillardin, Bio/Technology 1992, 10, 1579-1583;
-
(1992)
Bio/Technology
, vol.10
, pp. 1579-1583
-
-
Joyet, P.1
Declerck, N.2
Gaillardin, C.3
-
59
-
-
0024539019
-
-
h) Y. Makino, S. Negoro, I. Urabe, H. Okada, J. Biol. Chem. 1989, 264, 6381-6385;
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 6381-6385
-
-
Makino, Y.1
Negoro, S.2
Urabe, I.3
Okada, H.4
-
60
-
-
0022989294
-
-
i) P. N. Bryan, M. L. Rollence, M. W. Pantoliano, J. Wood, B. C. Finzel, G. L. Gilliland, A. J. Howard, T. L. Poulos, Proteins Struct. Funct. Genet. 1986, 1, 326-334;
-
(1986)
Proteins Struct. Funct. Genet.
, vol.1
, pp. 326-334
-
-
Bryan, P.N.1
Rollence, M.L.2
Pantoliano, M.W.3
Wood, J.4
Finzel, B.C.5
Gilliland, G.L.6
Howard, A.J.7
Poulos, T.L.8
-
62
-
-
33344455273
-
-
k) C. Yun, H. Matsuda, M. Kawamukai, Biosci. Biotechnol. Biochem. 2006, 70, 559-563;
-
(2006)
Biosci. Biotechnol. Biochem.
, vol.70
, pp. 559-563
-
-
Yun, C.1
Matsuda, H.2
Kawamukai, M.3
-
63
-
-
14644390952
-
-
l) N. Amin, A. D. Liu, S. Ramer, W. Aehle, D. Meijer, M. Metin, S. Wong, P. Gualfetti, V. Schellenberger, Protein Eng. Des. Sci. 2004, 17, 787-793;
-
(2004)
Protein Eng. Des. Sci.
, vol.17
, pp. 787-793
-
-
Amin, N.1
Liu, A.D.2
Ramer, S.3
Aehle, W.4
Meijer, D.5
Metin, M.6
Wong, S.7
Gualfetti, P.8
Schellenberger, V.9
-
64
-
-
0032730861
-
-
m) J. Hoseki, T. Yano, Y. Koyama, S. Kuramitsu, H. Kagamiyama, J. Biochem. 1999, 126, 951-956;
-
(1999)
J. Biochem.
, vol.126
, pp. 951-956
-
-
Hoseki, J.1
Yano, T.2
Koyama, Y.3
Kuramitsu, S.4
Kagamiyama, H.5
-
65
-
-
0032939624
-
-
n) I. Masuda-Nishimura, T. Minamihara, Y. Koyama, Biotechnol. Lett. 1999, 21, 203-207;
-
(1999)
Biotechnol. Lett.
, vol.21
, pp. 203-207
-
-
Masuda-Nishimura, I.1
Minamihara, T.2
Koyama, Y.3
-
66
-
-
0036398105
-
-
o) J. S. Pedersen, D. E. Otzen, P. Kristensen, J. Mol. Biol. 2002, 323, 115-123 ;
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 115-123
-
-
Pedersen, J.S.1
Otzen, D.E.2
Kristensen, P.3
-
67
-
-
0141817121
-
-
p) N. Zhang, W.-C. Suen, W. Windsor, L. Xiao, V. Madison, A. Zaks, Protein Eng. 2003, 16, 599-605;
-
(2003)
Protein Eng.
, vol.16
, pp. 599-605
-
-
Zhang, N.1
Suen, W.-C.2
Windsor, W.3
Xiao, L.4
Madison, V.5
Zaks, A.6
-
68
-
-
0025718955
-
-
q) S. Dao-pin, U. Sauer, H. Nicholson, B. W. Matthews, Biochemistry 1991, 30, 7142-7153;
-
(1991)
Biochemistry
, vol.30
, pp. 7142-7153
-
-
Dao-pin, S.1
Sauer, U.2
Nicholson, H.3
Matthews, B.W.4
-
69
-
-
27644459857
-
-
r) A. Nakamura, Y. Takakura, H. Kobayashi, T. Hoshino, J. Biosci. Bioeng. 2005, 100, 158-163;
-
(2005)
J. Biosci. Bioeng.
, vol.100
, pp. 158-163
-
-
Nakamura, A.1
Takakura, Y.2
Kobayashi, H.3
Hoshino, T.4
-
71
-
-
10744233518
-
-
t) J. Hoseki, A. Okamoto, N. Takada, A. Suenaga, N. Futatsugi, A. Konagaya, M. Taiji, T. Yano, S. Kuramitsu, H. Kagamiyama, Biochemistry 2003, 42, 14 469-14 475;
-
(2003)
Biochemistry
, vol.42
, pp. 14469-14475
-
-
Hoseki, J.1
Okamoto, A.2
Takada, N.3
Suenaga, A.4
Futatsugi, N.5
Konagaya, A.6
Taiji, M.7
Yano, T.8
Kuramitsu, S.9
Kagamiyama, H.10
-
72
-
-
23444450226
-
-
u) R. A. Chica, N. Doucet, J. N. Pelletier, Curr. Opin. Biotechnol. 2005, 16, 378-384.
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 378-384
-
-
Chica, R.A.1
Doucet, N.2
Pelletier, J.N.3
-
76
-
-
0037316987
-
-
d) Z. Yuan, J. Zhao, Z.-X. Wang, Protein Eng. 2003, 16, 109-114;
-
(2003)
Protein Eng.
, vol.16
, pp. 109-114
-
-
Yuan, Z.1
Zhao, J.2
Wang, Z.-X.3
-
77
-
-
0347364621
-
-
e) P. Radivojac, Z. Obradovic, D. K. Smith, G. Zhu, S. Vucetic, C. J. Brown, J. D. Lawson, A. K. Dunker, Protein Sci. 2004, 13, 71-80;
-
(2004)
Protein Sci.
, vol.13
, pp. 71-80
-
-
Radivojac, P.1
Obradovic, Z.2
Smith, D.K.3
Zhu, G.4
Vucetic, S.5
Brown, C.J.6
Lawson, J.D.7
Dunker, A.K.8
-
78
-
-
0001678764
-
-
f) K. N. Trueblood, H.-B. Bürgi, H. Burzlaff, J. D. Dunitz, C. M. Gramaccioli, H. H. Schulz, U. Shmueli, S. C. Abrahams, Acta Crystallogr. Sect. A 1996, 52, 770-781.
-
(1996)
Acta Crystallogr. Sect. A
, vol.52
, pp. 770-781
-
-
Trueblood, K.N.1
Bürgi, H.-B.2
Burzlaff, H.3
Dunitz, J.D.4
Gramaccioli, C.M.5
Schulz, H.H.6
Shmueli, U.7
Abrahams, S.C.8
-
79
-
-
33744501168
-
-
M. T. Reetz, L.-W. Wang, M. Bocola, Angew. Chem. 2006, 118, 1258-1263;
-
(2006)
Angew. Chem.
, vol.118
, pp. 1258-1263
-
-
Reetz, M.T.1
Wang, L.-W.2
Bocola, M.3
-
80
-
-
33744475011
-
-
Erratum: M. T. Reetz, L.-W. Wang, M. Bocola, Angew. Chem. 2006, 118, 2556
-
Angew. Chem. Int. Ed. 2006, 45, 1236-1241; Erratum: M. T. Reetz, L.-W. Wang, M. Bocola, Angew. Chem. 2006, 118, 2556;
-
(2006)
Angew. Chem. Int. Ed.
, vol.45
, pp. 1236-1241
-
-
-
82
-
-
0026638399
-
-
a) V. Dartois, A. Baulard, K. Schanck, C. Colson, Biochim. Biophys. Acta 1992, 1131, 253-260;
-
(1992)
Biochim. Biophys. Acta
, vol.1131
, pp. 253-260
-
-
Dartois, V.1
Baulard, A.2
Schanck, K.3
Colson, C.4
-
83
-
-
0032717591
-
-
b) K.-E. Jaeger, B. W. Dijkstra, M. T. Reetz, Annu. Rev. Microbiol. 1999, 53, 315-351.
-
(1999)
Annu. Rev. Microbiol.
, vol.53
, pp. 315-351
-
-
Jaeger, K.-E.1
Dijkstra, B.W.2
Reetz, M.T.3
-
84
-
-
0035946913
-
-
a) G. van Pouderoyen, T. Eggert, K.-E. Jaeger, B. W. Dijkstra, J. Mol. Biol. 2001, 309, 215-226;
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 215-226
-
-
Van Pouderoyen, G.1
Eggert, T.2
Jaeger, K.-E.3
Dijkstra, B.W.4
-
85
-
-
0041813141
-
-
b) S. A. Funke, A. Eipper, M. T. Reetz, N. Otte, W. Thiel, G. van Pouderoyen, Biocatal. Biotransform. 2003, 21, 67-73;
-
(2003)
Biocatal. Biotransform.
, vol.21
, pp. 67-73
-
-
Funke, S.A.1
Eipper, A.2
Reetz, M.T.3
Otte, N.4
Thiel, W.5
Van Pouderoyen, G.6
-
86
-
-
4143146196
-
-
c) E. Rajakumara, P. Acharya, S. Ahmad, V. M. Shanmugam, N. M. Rao, R. Sankaranarayanan, Acta Crystallogr. Sect. D 2004, 60, 160-162;
-
(2004)
Acta Crystallogr. Sect. D
, vol.60
, pp. 160-162
-
-
Rajakumara, E.1
Acharya, P.2
Ahmad, S.3
Shanmugam, V.M.4
Rao, N.M.5
Sankaranarayanan, R.6
-
87
-
-
30444439246
-
-
d) M. J. Droge, Y. L. Boersma, G. van Pouderoyen, T. E. Vrenken, C. J. Rüggeberg, M. T. Reetz, B. W. Dijkstra, W. J. Quax, ChemBioChem 2006, 7, 149-157;
-
(2006)
ChemBioChem
, vol.7
, pp. 149-157
-
-
Droge, M.J.1
Boersma, Y.L.2
Van Pouderoyen, G.3
Vrenken, T.E.4
Rüggeberg, C.J.5
Reetz, M.T.6
Dijkstra, B.W.7
Quax, W.J.8
-
88
-
-
0035997128
-
-
e) K. Kawasaki, H. Kondo, M. Suzuki, S. Ohgiya, S. Tsuda, Acta Crystallogr. Sect. D 2002, 58, 1168-1174.
-
(2002)
Acta Crystallogr. Sect. D
, vol.58
, pp. 1168-1174
-
-
Kawasaki, K.1
Kondo, H.2
Suzuki, M.3
Ohgiya, S.4
Tsuda, S.5
-
89
-
-
33845325301
-
-
note
-
The choice of the sites for saturation mutagenesis are the same if the B factors of the other X-ray structures of Lip A are chosen or averaged.
-
-
-
-
90
-
-
33845289746
-
-
note
-
We used the average B factors of all atoms (except the H atoms) of a given amino acid in the protein. It is clear that this treatment may bias some amino acids such as lysine. However, this does not detract from the power of our approach. Refinement by correction factors according to the amino acid structure may improve the method in other cases.
-
-
-
-
91
-
-
2142801614
-
-
(Eds.: N. Casali, A. Preston), Humana, Totowa, NJ
-
The widely used QuikChange protocol (QuikChange site-directed mutagenesis kit. Instruction Manual, 2003, Stratagene, La Jolla, CA) is based on a number of previous publications. These and other developments have been reviewed in: a) C. N. Dominy, D. W. Andrews in Methods in Molecular Biology, Vol. 235 (E. coli Plasmid Vectors) (Eds.: N. Casali, A. Preston), Humana, Totowa, NJ, 2003, 209-223;
-
(2003)
Methods in Molecular Biology, Vol. 235 (E. Coli Plasmid Vectors)
, pp. 209-223
-
-
Dominy, C.N.1
Andrews, D.W.2
-
92
-
-
0023929638
-
-
b) M. A. Vandeyar, M. P. Weiner, C. J. Hutton, C. A. Batt, Gene 1988, 65, 129-133;
-
(1988)
Gene
, vol.65
, pp. 129-133
-
-
Vandeyar, M.A.1
Weiner, M.P.2
Hutton, C.J.3
Batt, C.A.4
-
94
-
-
0035183586
-
-
50 values or simply of data pertaining to residual activity after heat treatment at a given temperature, see: a) L. Sun, I. P. Petrounia, M. Yagasaki, G. Bandara, F. H. Arnold, Protein Eng. 2001, 14, 699-704;
-
(2001)
Protein Eng.
, vol.14
, pp. 699-704
-
-
Sun, L.1
Petrounia, I.P.2
Yagasaki, M.3
Bandara, G.4
Arnold, F.H.5
-
95
-
-
0034842869
-
-
b) B. Morawski, S. Quan, F. H. Arnold, Biotechnol. Bioeng. 2001, 76, 99-107;
-
(2001)
Biotechnol. Bioeng.
, vol.76
, pp. 99-107
-
-
Morawski, B.1
Quan, S.2
Arnold, F.H.3
-
97
-
-
0037900194
-
-
d) N. Declerck, M. Machius, P. Joyet, G. Wiegand, R. Huber, C. Gaillardin, Protein Eng. 2003, 16, 287-293;
-
(2003)
Protein Eng.
, vol.16
, pp. 287-293
-
-
Declerck, N.1
Machius, M.2
Joyet, P.3
Wiegand, G.4
Huber, R.5
Gaillardin, C.6
-
98
-
-
0031935580
-
-
e) S. Akanuma, A. Yamagishi, N. Tanaka, T. Oshima, Protein Sci. 1998, 7, 698-705;
-
(1998)
Protein Sci.
, vol.7
, pp. 698-705
-
-
Akanuma, S.1
Yamagishi, A.2
Tanaka, N.3
Oshima, T.4
-
100
-
-
0032837742
-
-
g) B. Van den Burg, A. de Kreij, P. van der Veek, J. Mansfeld, G. Venema, Biotechnol. Appl. Biochem. 1999, 30, 35-40;
-
(1999)
Biotechnol. Appl. Biochem.
, vol.30
, pp. 35-40
-
-
Van Den Burg, B.1
De Kreij, A.2
Van Der Veek, P.3
Mansfeld, J.4
Venema, G.5
-
101
-
-
0036699655
-
-
h) K.-H. Oh, S.-H. Nam, H.-S. Kim, Protein Eng. 2002, 15, 689-695;
-
(2002)
Protein Eng.
, vol.15
, pp. 689-695
-
-
Oh, K.-H.1
Nam, S.-H.2
Kim, H.-S.3
-
102
-
-
0036227252
-
-
i) M. G. Pikkemaat, A. B. M. Linssen, H. J. C. Berendsen, D. B. Janssen, Protein Eng. 2002, 15, 185-192;
-
(2002)
Protein Eng.
, vol.15
, pp. 185-192
-
-
Pikkemaat, M.G.1
Linssen, A.B.M.2
Berendsen, H.J.C.3
Janssen, D.B.4
-
103
-
-
0034675342
-
-
j) L.-J. Wang, X.-D. Kong, H.-Y. Zhang, X.-P. Wang, J. Zhang, Biochem. Biophys. Res. Commun. 2000, 276, 346-349;
-
(2000)
Biochem. Biophys. Res. Commun.
, vol.276
, pp. 346-349
-
-
Wang, L.-J.1
Kong, X.-D.2
Zhang, H.-Y.3
Wang, X.-P.4
Zhang, J.5
-
104
-
-
0030937716
-
-
k) J. Mansfeld, G. Vriend, B. W. Dijkstra, O. R. Veltman, B. Van den Burg, G. Venema, R. Ulbrich-Hofmann, V. G. H. Eijsink, J. Biol. Chem. 1997, 272, 11 152-11 156;
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 11152-11156
-
-
Mansfeld, J.1
Vriend, G.2
Dijkstra, B.W.3
Veltman, O.R.4
Van Den Burg, B.5
Venema, G.6
Ulbrich-Hofmann, R.7
Eijsink, V.G.H.8
-
105
-
-
0036184149
-
-
l) E. H. Muslin, S. E. Clark, C. A. Henson, Protein Eng. 2002, 15, 29-33;
-
(2002)
Protein Eng.
, vol.15
, pp. 29-33
-
-
Muslin, E.H.1
Clark, S.E.2
Henson, C.A.3
-
106
-
-
0036217687
-
-
m) O. Turunen, M. Vuorio, F. Fenel, M. Leisola, Protein Eng. 2002, 15, 141-145;
-
(2002)
Protein Eng.
, vol.15
, pp. 141-145
-
-
Turunen, O.1
Vuorio, M.2
Fenel, F.3
Leisola, M.4
-
107
-
-
26844523510
-
-
n) T. W. Johannes, R. D. Woodyer, H. Zhao, Appl. Environ. Microbiol. 2005, 71, 5728-5734;
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 5728-5734
-
-
Johannes, T.W.1
Woodyer, R.D.2
Zhao, H.3
-
108
-
-
1242338176
-
-
o) J.-H. Kim, G.-S. Choi, S.-B. Kim, W.-H. Kim, J.-Y. Lee, Y.-W. Ryu, G.-J. Kim, J. Mol. Catal. B 2004, 27, 169-175;
-
(2004)
J. Mol. Catal. B
, vol.27
, pp. 169-175
-
-
Kim, J.-H.1
Choi, G.-S.2
Kim, S.-B.3
Kim, W.-H.4
Lee, J.-Y.5
Ryu, Y.-W.6
Kim, G.-J.7
-
109
-
-
37849185207
-
-
DOI: 10.1016/j.jbiotec.2006.06.015.
-
p) D. E. Stephens, K. Rumbold, K. Permaul, B. A. Prior, S. Singh, J. Biotechnol. 2006, DOI: 10.1016/j.jbiotec.2006.06.015.
-
(2006)
J. Biotechnol.
-
-
Stephens, D.E.1
Rumbold, K.2
Permaul, K.3
Prior, B.A.4
Singh, S.5
-
110
-
-
18044397860
-
-
For the application of mathematical expressions useful in the construction, description, and evaluation of protein libraries, see: a) A. D. Bosley, M. Ostermeier, Biomol. Eng. 2005, 22, 57-61;
-
(2005)
Biomol. Eng.
, vol.22
, pp. 57-61
-
-
Bosley, A.D.1
Ostermeier, M.2
-
113
-
-
0041765676
-
-
d) W. M. Patrick, A. E. Firth, J. M. Blackburn, Protein Eng. 2003, 16, 451-457;
-
(2003)
Protein Eng.
, vol.16
, pp. 451-457
-
-
Patrick, W.M.1
Firth, A.E.2
Blackburn, J.M.3
-
114
-
-
33845345909
-
-
note
-
e) see also reference [22b] regarding the CASTer program available free of charge.
-
-
-
-
115
-
-
33845322962
-
-
note
-
[11] needs to be studied in future investigations.
-
-
-
-
116
-
-
33845302932
-
-
note
-
[1,9]
-
-
-
-
117
-
-
33845326378
-
-
note
-
If, in a given study, amino acid sites in the core of the enzyme turn out to have high B values, these can, but need not be, considered.
-
-
-
-
118
-
-
29544447722
-
-
a) M. T. Reetz, M. Bocola, J. D. Carballeira, D. Zha, A. Vogel, Angew. Chem. 2005, 117, 4264-4268;
-
(2005)
Angew. Chem.
, vol.117
, pp. 4264-4268
-
-
Reetz, M.T.1
Bocola, M.2
Carballeira, J.D.3
Zha, D.4
Vogel, A.5
-
119
-
-
22144485602
-
-
Angew. Chem. Int. Ed. 2005, 44, 4192-4196;
-
(2005)
Angew. Chem. Int. Ed.
, vol.44
, pp. 4192-4196
-
-
-
120
-
-
33747234745
-
-
b) M. T. Reetz, J. D. Carballeira, J. Peyralans, H. Höbenreich, A. Maichele, A. Vogel, Chem. Eur. J. 2006, 12, 6031-6038.
-
(2006)
Chem. Eur. J.
, vol.12
, pp. 6031-6038
-
-
Reetz, M.T.1
Carballeira, J.D.2
Peyralans, J.3
Höbenreich, H.4
Maichele, A.5
Vogel, A.6
-
121
-
-
33645811495
-
-
J. D. Bloom, S. T. Labthavikul, C. R. Otey, F. H. Arnold, Proc. Natl. Acad. Sci. USA 2006, 103, 5869-5874.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5869-5874
-
-
Bloom, J.D.1
Labthavikul, S.T.2
Otey, C.R.3
Arnold, F.H.4
-
122
-
-
33645288849
-
-
a) A. Schlessinger, G. Yachdav, B. Rost, Bioinformatics 2006, 22, 891-893;
-
(2006)
Bioinformatics
, vol.22
, pp. 891-893
-
-
Schlessinger, A.1
Yachdav, G.2
Rost, B.3
-
123
-
-
30344451365
-
-
b) Y. Jin, R. L. Dunbrack, Jr., Proteins Struct. Funct. Bioinf. 2005, 61 (Supp. 7), 167-175.
-
(2005)
Proteins Struct. Funct. Bioinf.
, vol.61
, Issue.SUPPL. 7
, pp. 167-175
-
-
Jin, Y.1
Dunbrack Jr., R.L.2
-
125
-
-
4344592803
-
-
b) C. Wang, N. Karpowich, J. F. Hunt, M. Rance, A. G. Palmer, J. Mol. Biol. 2004, 342, 525-537.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 525-537
-
-
Wang, C.1
Karpowich, N.2
Hunt, J.F.3
Rance, M.4
Palmer, A.G.5
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