-
1
-
-
84986522918
-
ICM: A new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation
-
Abagyan R., Totrov M., Kuznetsov M. ICM: a new method for protein modeling and design: applications to docking and structure prediction from the distorted native conformation. J. Comput. Chem. 15:1994;488-506.
-
(1994)
J. Comput. Chem.
, vol.15
, pp. 488-506
-
-
Abagyan, R.1
Totrov, M.2
Kuznetsov, M.3
-
2
-
-
0018788367
-
Thermal stability and protein structure
-
Argos P., Rossmann M., Grau U., Zuber H., Frank G., Tratschin J. Thermal stability and protein structure. Biochemistry. 25:1979;5698-5703.
-
(1979)
Biochemistry
, vol.25
, pp. 5698-5703
-
-
Argos, P.1
Rossmann, M.2
Grau, U.3
Zuber, H.4
Frank, G.5
Tratschin, J.6
-
6
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein F., Koetzle T., Williams G., Meyer E. J., Brice M., Rodgers J., Kennard O., Shimanouchi T., Tasumi M. The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112:1977;535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.1
Koetzle, T.2
Williams, G.3
Meyer, E.J.4
Brice, M.5
Rodgers, J.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
8
-
-
0016606973
-
Structural invariants in proteins folding
-
Chothia C. Structural invariants in proteins folding. Nature. 254:1975;304-308.
-
(1975)
Nature
, vol.254
, pp. 304-308
-
-
Chothia, C.1
-
10
-
-
0025370815
-
Dominant forces in protein folding
-
Dill K. Dominant forces in protein folding. Biochemistry. 29:1990;7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.1
-
11
-
-
0000152788
-
Interpretation of protein folding and binding with atomic solvation parameters
-
Eisenberg D., Wesson M., Yamashita M. Interpretation of protein folding and binding with atomic solvation parameters. Chem. Scripta, ser. A. 29:1989;217-221.
-
(1989)
Chem. Scripta, Ser. A
, vol.29
, pp. 217-221
-
-
Eisenberg, D.1
Wesson, M.2
Yamashita, M.3
-
12
-
-
84913591509
-
Improved strategy in analytic surface calculation for molecular systems: Handling of singularities and computational efficiency
-
Eisenhaber F., Argos P. Improved strategy in analytic surface calculation for molecular systems: handling of singularities and computational efficiency. J. Comput. Chem. 14:1993;1272-1280.
-
(1993)
J. Comput. Chem.
, vol.14
, pp. 1272-1280
-
-
Eisenhaber, F.1
Argos, P.2
-
13
-
-
0027462173
-
Principals of protein stability derived from protein engineering experiments
-
Fersht A. R., Serrano L. Principals of protein stability derived from protein engineering experiments. Curr. Opin. Struct. Biol. 3:1993;75-83.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 75-83
-
-
Fersht, A.R.1
Serrano, L.2
-
15
-
-
0026656815
-
Exhaustive matching of the entire protein sequence database
-
Gonnet G., Cohen M., Benner S. Exhaustive matching of the entire protein sequence database. Science. 256:1992;1433-1445.
-
(1992)
Science
, vol.256
, pp. 1433-1445
-
-
Gonnet, G.1
Cohen, M.2
Benner, S.3
-
17
-
-
0028994307
-
2.0 Å structure of indole-3-glycerol phosphate synthase from the hyperthermophileSulfolobus solfataricus
-
Hennig M., Darimont B., Sterner R., Kirschner K., Jansonius J. N. 2.0 Å structure of indole-3-glycerol phosphate synthase from the hyperthermophileSulfolobus solfataricus. Structure. 3:1995;1295-1306.
-
(1995)
Structure
, vol.3
, pp. 1295-1306
-
-
Hennig, M.1
Darimont, B.2
Sterner, R.3
Kirschner, K.4
Jansonius, J.N.5
-
19
-
-
0028929583
-
Free energy balance in protein folding
-
Honig B., Yang A. S. Free energy balance in protein folding. Advan. Protein Chem. 46:1995;27-58.
-
(1995)
Advan. Protein Chem.
, vol.46
, pp. 27-58
-
-
Honig, B.1
Yang, A.S.2
-
20
-
-
0027251599
-
The effect of cations on the thermophilic character of alkaline phosphatase fromThermoactinomyces vulgaris
-
Iny D., Pinsky A., Malovani H. The effect of cations on the thermophilic character of alkaline phosphatase fromThermoactinomyces vulgaris. Biochem. Mol. Biol. Int. 29:1993;729-737.
-
(1993)
Biochem. Mol. Biol. Int.
, vol.29
, pp. 729-737
-
-
Iny, D.1
Pinsky, A.2
Malovani, H.3
-
21
-
-
0028818570
-
Comparison of atomic solvation parametric sets: Applicability and limitations in protein folding and binding
-
Juffer A., Eisenhaber F., Hubbard S., Walther D., Argos P. Comparison of atomic solvation parametric sets: applicability and limitations in protein folding and binding. Protein Sci. 4:1995;2499-2509.
-
(1995)
Protein Sci.
, vol.4
, pp. 2499-2509
-
-
Juffer, A.1
Eisenhaber, F.2
Hubbard, S.3
Walther, D.4
Argos, P.5
-
22
-
-
0008863560
-
Some factors in the interpretation of protein denaturation
-
Kauzmann W. Some factors in the interpretation of protein denaturation. Advan. Protein Chem. 14:1959;1-63.
-
(1959)
Advan. Protein Chem.
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
23
-
-
0028903461
-
The crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic bacteriumThermotoga maritima
-
Korndörfer I., Steipe B., Huber R., Tomschy A., Jaenicke R. The crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic bacteriumThermotoga maritima. J. Mol. Biol. 246:1995;511-521.
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 511-521
-
-
Korndörfer, I.1
Steipe, B.2
Huber, R.3
Tomschy, A.4
Jaenicke, R.5
-
25
-
-
0023430560
-
Enhanced protein thermostability from site directed mutations that decrease the entropy of unfolding
-
Matthews B., Nicholson H., Becktel W. Enhanced protein thermostability from site directed mutations that decrease the entropy of unfolding. Proc. Natl Acad. Sci. USA. 84:1987;6663-6667.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 6663-6667
-
-
Matthews, B.1
Nicholson, H.2
Becktel, W.3
-
26
-
-
0028304962
-
Satisfying hydrogen bonding potential in proteins
-
McDonald I., Thornton J. Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238:1994;777-793.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 777-793
-
-
McDonald, I.1
Thornton, J.2
-
27
-
-
0024974452
-
Engineering protein thermal stability: Sequence statistics point to residue substitutions in alpha-helices
-
Menéndez-Arias L., Argos P. Engineering protein thermal stability: sequence statistics point to residue substitutions in alpha-helices. J. Mol. Biol. 206:1989;397-406.
-
(1989)
J. Mol. Biol.
, vol.206
, pp. 397-406
-
-
Menéndez-Arias, L.1
Argos, P.2
-
28
-
-
85030295329
-
-
Molsoft Limited Liability Corporation, P.O. Box 113, Metuchen, New Jersey, 08840, USA
-
Molsoft Limited Liability Corporation, P.O. Box 113, Metuchen, New Jersey, 08840, USA, (http://molsoft.com).
-
-
-
-
29
-
-
0026597114
-
Arginine residues as stabilizing elements in proteins
-
Mrabet N T., Van den Broeck A., Van den brande I., Stanssens P., Laroche Y., Lambeir A. M., Matthijssens G., Jenkins J., Chiadmi M., van Tilbeurgh H. Arginine residues as stabilizing elements in proteins. Biochemistry. 31:1992;2239-2253.
-
(1992)
Biochemistry
, vol.31
, pp. 2239-2253
-
-
Mrabet, N.T.1
Van Den Broeck, A.2
Van Den Brande, I.3
Stanssens, P.4
Laroche, Y.5
Lambeir, A.M.6
Matthijssens, G.7
Jenkins, J.8
Chiadmi, M.9
Van Tilbeurgh, H.10
-
30
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman S., Wunsch C. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48:1970;443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.1
Wunsch, C.2
-
31
-
-
0025271463
-
PH dependence of the urea and guanidine hydrochloride denaturation of ribonuclease A and ribonuclease T1
-
Pace N. C., Laurents D. V., Thomson J. A. pH dependence of the urea and guanidine hydrochloride denaturation of ribonuclease A and ribonuclease T1. Biochemistry. 29:1990;2564-2572.
-
(1990)
Biochemistry
, vol.29
, pp. 2564-2572
-
-
Pace, N.C.1
Laurents, D.V.2
Thomson, J.A.3
-
32
-
-
0026602704
-
Urea denaturation of barnase: PH dependence and characterization of the unfolded state
-
Pace N. C., Laurents D. V., Erikson R. E. Urea denaturation of barnase: pH dependence and characterization of the unfolded state. Biochemistry. 31:1992;2728-2734.
-
(1992)
Biochemistry
, vol.31
, pp. 2728-2734
-
-
Pace, N.C.1
Laurents, D.V.2
Erikson, R.E.3
-
33
-
-
0030059689
-
Forces contributing to the conformational stability of proteins
-
Pace N. C., Shirley B. A., McNutt M., Gajiwala K. Forces contributing to the conformational stability of proteins. FASEB. 10:1996;75-83.
-
(1996)
FASEB.
, vol.10
, pp. 75-83
-
-
Pace, N.C.1
Shirley, B.A.2
McNutt, M.3
Gajiwala, K.4
-
34
-
-
0016771835
-
Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2
-
Perutz M., Raidt H. Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2. Nature. 255:1975;256-259.
-
(1975)
Nature
, vol.255
, pp. 256-259
-
-
Perutz, M.1
Raidt, H.2
-
35
-
-
0029932580
-
Analysis of protein conformational characteristics related to thermostability
-
Querol E., Perez-Pons J. A., Mozo-Villarias A. Analysis of protein conformational characteristics related to thermostability. Protein Eng. 9:1996;265-271.
-
(1996)
Protein Eng.
, vol.9
, pp. 265-271
-
-
Querol, E.1
Perez-Pons, J.A.2
Mozo-Villarias, A.3
-
36
-
-
0029099960
-
Engineering thermostability: Lessons from thermophilic proteins
-
Russell R. J. M., Taylor G. L. Engineering thermostability: lessons from thermophilic proteins. Curr. Opin. Biotechnol. 6:1995;370-374.
-
(1995)
Curr. Opin. Biotechnol.
, vol.6
, pp. 370-374
-
-
Russell, R.J.M.1
Taylor, G.L.2
-
37
-
-
0029896617
-
An unusual route to thermal stability disclosed by the comparison ofThermus thermophilusEscherichia coli
-
Salminen T., Teplyakov A., Karikare J., Cooperman B. D., Lahti R., Goldman A. An unusual route to thermal stability disclosed by the comparison ofThermus thermophilusEscherichia coli. Protein Sci. 5:1996;1014-1025.
-
(1996)
Protein Sci.
, vol.5
, pp. 1014-1025
-
-
Salminen, T.1
Teplyakov, A.2
Karikare, J.3
Cooperman, B.D.4
Lahti, R.5
Goldman, A.6
-
39
-
-
0030342727
-
Helmholtz free energies of atom pair interactions in proteins
-
Sippl M. J., Ortner M., Jaritz M., Lackner P., Flöckner, H. Helmholtz free energies of atom pair interactions in proteins. Folding Des. 14:1996;289-298.
-
(1996)
Folding Des.
, vol.14
, pp. 289-298
-
-
Sippl, M.J.1
Ortner, M.2
Jaritz, M.3
Lackner, P.4
Flöckner, H.5
-
40
-
-
0029893110
-
Thermoenzymes: Identifying molecular determinants of protein structural and functional stability
-
Vieille C., Zeikus J. Thermoenzymes: identifying molecular determinants of protein structural and functional stability. Trends Biotechnol. 14:1996;183-191.
-
(1996)
Trends Biotechnol.
, vol.14
, pp. 183-191
-
-
Vieille, C.1
Zeikus, J.2
-
41
-
-
0011186093
-
Protein thermal stability: Hydrogen bonds or internal packing?
-
Vogt G., Argos P. Protein thermal stability: hydrogen bonds or internal packing? Folding Des. 1997;In the press.
-
(1997)
Folding Des.
-
-
Vogt, G.1
Argos, P.2
-
42
-
-
0029046744
-
An assessment of amino acid exchange matrices in aligning protein sequences: The twilight zone revisited
-
Vogt G., Etzold T., Argos P. An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited. J. Mol. Biol. 249:1995;816-831.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 816-831
-
-
Vogt, G.1
Etzold, T.2
Argos, P.3
-
43
-
-
0027231258
-
On the pH dependence of protein stability
-
Yang A. S., Honig B. On the pH dependence of protein stability. J. Mol. Biol. 231:1993;459-474.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 459-474
-
-
Yang, A.S.1
Honig, B.2
-
44
-
-
13244249836
-
The structure ofPyrococcus furiosus
-
Yip K. S., Stillman T. J., Britton K. L., Artymiuk P. J., Baker P. J., Sedelnikova S. E., Engel P. C., Pasquo A., Chiaraluce R., Consalvi V. The structure ofPyrococcus furiosus. Structure. 3:1995;1147-1158.
-
(1995)
Structure
, vol.3
, pp. 1147-1158
-
-
Yip, K.S.1
Stillman, T.J.2
Britton, K.L.3
Artymiuk, P.J.4
Baker, P.J.5
Sedelnikova, S.E.6
Engel, P.C.7
Pasquo, A.8
Chiaraluce, R.9
Consalvi, V.10
|