-
1
-
-
84940982679
-
Human protein interaction networks across tissues and diseases
-
Yeger-Lotem, E. and Sharan, R. (2015) Human protein interaction networks across tissues and diseases. Front. Genet., 6, 257.
-
(2015)
Front. Genet.
, vol.6
, pp. 257
-
-
Yeger-Lotem, E.1
Sharan, R.2
-
2
-
-
85044948558
-
Using deep learning to model the hierarchical structure and function of a cell
-
Ma, J., Yu, M.K., Fong, S., Ono, K., Sage, E., Demchak, B., Sharan, R. and Ideker, T. (2018) Using deep learning to model the hierarchical structure and function of a cell. Nat. Methods, 15, 290-298.
-
(2018)
Nat. Methods
, vol.15
, pp. 290-298
-
-
Ma, J.1
Yu, M.K.2
Fong, S.3
Ono, K.4
Sage, E.5
Demchak, B.6
Sharan, R.7
Ideker, T.8
-
3
-
-
84887084951
-
Network-based stratification of tumor mutations
-
Hofree, M., Shen, J.P., Carter, H., Gross, A. and Ideker, T. (2013) Network-based stratification of tumor mutations. Nat. Methods, 10, 1108-1115.
-
(2013)
Nat. Methods
, vol.10
, pp. 1108-1115
-
-
Hofree, M.1
Shen, J.P.2
Carter, H.3
Gross, A.4
Ideker, T.5
-
4
-
-
84928389942
-
Widespread macromolecular interaction perturbations in human genetic disorders
-
Sahni, N., Yi, S., Taipale, M., Fuxman Bass, J.I., Coulombe-Huntington, J., Yang, F., Peng, J., Weile, J., Karras, G.I., Wang, Y. et al. (2015) Widespread macromolecular interaction perturbations in human genetic disorders. Cell, 161, 647-660.
-
(2015)
Cell
, vol.161
, pp. 647-660
-
-
Sahni, N.1
Yi, S.2
Taipale, M.3
Fuxman Bass, J.I.4
Coulombe-Huntington, J.5
Yang, F.6
Peng, J.7
Weile, J.8
Karras, G.I.9
Wang, Y.10
-
5
-
-
84992751266
-
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
-
Srivas, R., Shen, J.P., Yang, C.C., Sun, S.M., Li, J., Gross, A.M., Jensen, J., Licon, K., Bojorquez-Gomez, A., Klepper, K. et al. (2016) A network of conserved synthetic lethal interactions for exploration of precision cancer therapy. Mol. Cell, 63, 514-525.
-
(2016)
Mol. Cell
, vol.63
, pp. 514-525
-
-
Srivas, R.1
Shen, J.P.2
Yang, C.C.3
Sun, S.M.4
Li, J.5
Gross, A.M.6
Jensen, J.7
Licon, K.8
Bojorquez-Gomez, A.9
Klepper, K.10
-
6
-
-
85050790865
-
Classifying tumors by supervised network propagation
-
Zhang, W., Ma, J. and Ideker, T. (2018) Classifying tumors by supervised network propagation. Bioinformatics, 34, i484-i493.
-
(2018)
Bioinformatics
, vol.34
, pp. i484-i493
-
-
Zhang, W.1
Ma, J.2
Ideker, T.3
-
7
-
-
84955483290
-
Fundamentals of protein interaction network mapping
-
Snider, J., Kotlyar, M., Saraon, P., Yao, Z., Jurisica, I. and Stagljar, I. (2015) Fundamentals of protein interaction network mapping. Mol. Syst. Biol., 11, 848.
-
(2015)
Mol. Syst. Biol.
, vol.11
, pp. 848
-
-
Snider, J.1
Kotlyar, M.2
Saraon, P.3
Yao, Z.4
Jurisica, I.5
Stagljar, I.6
-
8
-
-
84928205754
-
High-throughput functional genomics using CRISPR-Cas9
-
Shalem, O., Sanjana, N.E. and Zhang, F. (2015) High-throughput functional genomics using CRISPR-Cas9. Nat. Rev. Genet., 16, 299-311.
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 299-311
-
-
Shalem, O.1
Sanjana, N.E.2
Zhang, F.3
-
9
-
-
85044580368
-
Cancer CRISPR screens in vivo
-
Chow, R.D. and Chen, S. (2018) Cancer CRISPR screens in vivo. Trends Cancer, 4, 349-358.
-
(2018)
Trends Cancer
, vol.4
, pp. 349-358
-
-
Chow, R.D.1
Chen, S.2
-
10
-
-
85015668248
-
Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions
-
Shen, J.P., Zhao, D., Sasik, R., Luebeck, J., Birmingham, A., Bojorquez-Gomez, A., Licon, K., Klepper, K., Pekin, D., Beckett, A.N. et al. (2017) Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions. Nat. Methods, 14, 573-576.
-
(2017)
Nat. Methods
, vol.14
, pp. 573-576
-
-
Shen, J.P.1
Zhao, D.2
Sasik, R.3
Luebeck, J.4
Birmingham, A.5
Bojorquez-Gomez, A.6
Licon, K.7
Klepper, K.8
Pekin, D.9
Beckett, A.N.10
-
11
-
-
85052755903
-
Mapping the genetic landscape of human cells
-
Horlbeck, M.A., Xu, A., Wang, M., Bennett, N.K., Park, C.Y., Bogdanoff, D., Adamson, B., Chow, E.D., Kampmann, M., Peterson, T.R. et al. (2018) Mapping the genetic landscape of human cells. Cell, 174, 953-967.
-
(2018)
Cell
, vol.174
, pp. 953-967
-
-
Horlbeck, M.A.1
Xu, A.2
Wang, M.3
Bennett, N.K.4
Park, C.Y.5
Bogdanoff, D.6
Adamson, B.7
Chow, E.D.8
Kampmann, M.9
Peterson, T.R.10
-
12
-
-
85036553710
-
The library of integrated network-based cellular signatures NIH program: System-Level cataloging of human cells response to perturbations
-
Keenan, A.B., Jenkins, S.L., Jagodnik, K.M., Koplev, S., He, E., Torre, D., Wang, Z., Dohlman, A.B., Silverstein, M.C., Lachmann, A. et al. (2018) The library of integrated network-based cellular signatures NIH program: system-Level cataloging of human cells response to perturbations. Cell Syst., 6, 13-24.
-
(2018)
Cell Syst.
, vol.6
, pp. 13-24
-
-
Keenan, A.B.1
Jenkins, S.L.2
Jagodnik, K.M.3
Koplev, S.4
He, E.5
Torre, D.6
Wang, Z.7
Dohlman, A.B.8
Silverstein, M.C.9
Lachmann, A.10
-
13
-
-
85034585650
-
CRISPR/Cas9 library screening for drug target discovery
-
Kurata, M., Yamamoto, K., Moriarity, B.S., Kitagawa, M. and Largaespada, D.A. (2018) CRISPR/Cas9 library screening for drug target discovery. J. Hum. Genet., 63, 179-186.
-
(2018)
J. Hum. Genet.
, vol.63
, pp. 179-186
-
-
Kurata, M.1
Yamamoto, K.2
Moriarity, B.S.3
Kitagawa, M.4
Largaespada, D.A.5
-
14
-
-
84895922856
-
Systems biology in drug discovery and development
-
Berg, E.L. (2014) Systems biology in drug discovery and development. Drug Discov. Today, 19, 113-125.
-
(2014)
Drug Discov. Today
, vol.19
, pp. 113-125
-
-
Berg, E.L.1
-
15
-
-
79952431304
-
Predictive, personalized, preventive, participatory (P4) cancer medicine
-
Hood, L. and Friend, S.H. (2011) Predictive, personalized, preventive, participatory (P4) cancer medicine. Nat. Rev. Clin. Oncol., 8, 184-187.
-
(2011)
Nat. Rev. Clin. Oncol.
, vol.8
, pp. 184-187
-
-
Hood, L.1
Friend, S.H.2
-
16
-
-
84884397652
-
Integrative approaches for finding modular structure in biological networks
-
Mitra, K., Carvunis, A.R., Ramesh, S.K. and Ideker, T. (2013) Integrative approaches for finding modular structure in biological networks. Nat. Rev. Genet., 14, 719-732.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 719-732
-
-
Mitra, K.1
Carvunis, A.R.2
Ramesh, S.K.3
Ideker, T.4
-
17
-
-
84864402194
-
Leveraging models of cell regulation and GWAS data in integrative network-based association studies
-
Califano, A., Butte, A.J., Friend, S., Ideker, T. and Schadt, E. (2012) Leveraging models of cell regulation and GWAS data in integrative network-based association studies. Nat. Genet., 44, 841-847.
-
(2012)
Nat. Genet.
, vol.44
, pp. 841-847
-
-
Califano, A.1
Butte, A.J.2
Friend, S.3
Ideker, T.4
Schadt, E.5
-
18
-
-
0037264524
-
The GRID: The general repository for interaction datasets
-
Breitkreutz, B.J., Stark, C. and Tyers, M. (2003) The GRID: The general repository for interaction datasets. Genome Biol., 4, R23.
-
(2003)
Genome Biol.
, vol.4
, pp. R23
-
-
Breitkreutz, B.J.1
Stark, C.2
Tyers, M.3
-
19
-
-
85040934728
-
Saccharomyces genome database informs human biology
-
Skrzypek, M.S., Nash, R.S., Wong, E.D., MacPherson, K.A., Hellerstedt, S.T., Engel, S.R., Karra, K., Weng, S., Sheppard, T.K., Binkley, G. et al. (2018) Saccharomyces genome database informs human biology. Nucleic Acids Res., 46, D736-D742.
-
(2018)
Nucleic Acids Res.
, vol.46
, pp. D736-D742
-
-
Skrzypek, M.S.1
Nash, R.S.2
Wong, E.D.3
MacPherson, K.A.4
Hellerstedt, S.T.5
Engel, S.R.6
Karra, K.7
Weng, S.8
Sheppard, T.K.9
Binkley, G.10
-
20
-
-
85040915398
-
WormBase 2017: Molting into a new stage
-
Lee, R.Y.N., Howe, K.L., Harris, T.W., Arnaboldi, V., Cain, S., Chan, J., Chen, W.J., Davis, P., Gao, S., Grove, C. et al. (2018) WormBase 2017: molting into a new stage. Nucleic Acids Res., 46, D869-D874.
-
(2018)
Nucleic Acids Res.
, vol.46
, pp. D869-D874
-
-
Lee, R.Y.N.1
Howe, K.L.2
Harris, T.W.3
Arnaboldi, V.4
Cain, S.5
Chan, J.6
Chen, W.J.7
Davis, P.8
Gao, S.9
Grove, C.10
-
21
-
-
84976897928
-
Database resources of the National Center for Biotechnology Information
-
NCBI Resource Coordinators (2016) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 44, D7-D19.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D7-D19
-
-
-
22
-
-
85016153986
-
UniProt: The universal protein knowledgebase
-
The UniProt Consortium (2017) UniProt: The universal protein knowledgebase. Nucleic Acids Res., 45, D158-D169.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D158-D169
-
-
-
23
-
-
85016136235
-
The BioGRID interaction database: 2017 update
-
Chatr-Aryamontri, A., Oughtred, R., Boucher, L., Rust, J., Chang, C., Kolas, N.K., O'Donnell, L., Oster, S., Theesfeld, C., Sellam, A. et al. (2017) The BioGRID interaction database: 2017 update. Nucleic Acids Res., 45, D369-D379.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D369-D379
-
-
Chatr-Aryamontri, A.1
Oughtred, R.2
Boucher, L.3
Rust, J.4
Chang, C.5
Kolas, N.K.6
O'Donnell, L.7
Oster, S.8
Theesfeld, C.9
Sellam, A.10
-
24
-
-
35348976204
-
Broadening the horizon-level 2.5 of the HUPO-PSI format for molecular interactions
-
Kerrien, S., Orchard, S., Montecchi-Palazzi, L., Aranda, B., Quinn, A.F., Vinod, N., Bader, G.D., Xenarios, I., Wojcik, J., Sherman, D. et al. (2007) Broadening the horizon-level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol., 5, 44.
-
(2007)
BMC Biol.
, vol.5
, pp. 44
-
-
Kerrien, S.1
Orchard, S.2
Montecchi-Palazzi, L.3
Aranda, B.4
Quinn, A.F.5
Vinod, N.6
Bader, G.D.7
Xenarios, I.8
Wojcik, J.9
Sherman, D.10
-
25
-
-
84941035651
-
PomBase 2015: Updates to the fission yeast database
-
McDowall, M.D., Harris, M.A., Lock, A., Rutherford, K., Staines, D.M., Bahler, J., Kersey, P.J., Oliver, S.G. and Wood, V. (2015) PomBase 2015: updates to the fission yeast database. Nucleic Acids Res., 43, D656-D661.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D656-D661
-
-
McDowall, M.D.1
Harris, M.A.2
Lock, A.3
Rutherford, K.4
Staines, D.M.5
Bahler, J.6
Kersey, P.J.7
Oliver, S.G.8
Wood, V.9
-
26
-
-
85016105655
-
The Candida Genome Database (CGD): Incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data
-
Skrzypek, M.S., Binkley, J., Binkley, G., Miyasato, S.R., Simison, M. and Sherlock, G. (2017) The Candida Genome Database (CGD): Incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Res., 45, D592-D596.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D592-D596
-
-
Skrzypek, M.S.1
Binkley, J.2
Binkley, G.3
Miyasato, S.R.4
Simison, M.5
Sherlock, G.6
-
27
-
-
85016026174
-
FlyBase at 25: Looking to the future
-
Gramates, L.S., Marygold, S.J., Santos, G.D., Urbano, J.M., Antonazzo, G., Matthews, B.B., Rey, A.J., Tabone, C.J., Crosby, M.A., Emmert, D.B. et al. (2017) FlyBase at 25: looking to the future. Nucleic Acids Res., 45, D663-D671.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D663-D671
-
-
Gramates, L.S.1
Marygold, S.J.2
Santos, G.D.3
Urbano, J.M.4
Antonazzo, G.5
Matthews, B.B.6
Rey, A.J.7
Tabone, C.J.8
Crosby, M.A.9
Emmert, D.B.10
-
28
-
-
84862234802
-
The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools
-
Lamesch, P., Berardini, T.Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., Muller, R., Dreher, K., Alexander, D.L., Garcia-Hernandez, M. et al. (2012) The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res., 40, D1202-D1210.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D1202-D1210
-
-
Lamesch, P.1
Berardini, T.Z.2
Li, D.3
Swarbreck, D.4
Wilks, C.5
Sasidharan, R.6
Muller, R.7
Dreher, K.8
Alexander, D.L.9
Garcia-Hernandez, M.10
-
29
-
-
85016152530
-
The Zebrafish Model Organism Database: New support for human disease models, mutation details, gene expression phenotypes and searching
-
Howe, D.G., Bradford, Y.M., Eagle, A., Fashena, D., Frazer, K., Kalita, P., Mani, P., Martin, R., Moxon, S.T., Paddock, H. et al. (2017) The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. Nucleic Acids Res., 45, D758-D768.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D758-D768
-
-
Howe, D.G.1
Bradford, Y.M.2
Eagle, A.3
Fashena, D.4
Frazer, K.5
Kalita, P.6
Mani, P.7
Martin, R.8
Moxon, S.T.9
Paddock, H.10
-
30
-
-
85040950396
-
Mouse Genome Database (MGD)-2018: Knowledgebase for the laboratory mouse
-
Smith, C.L., Blake, J.A., Kadin, J.A., Richardson, J.E., Bult, C.J. and Mouse Genome Database, Group. (2018) Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse. Nucleic Acids Res., 46, D836-D842.
-
(2018)
Nucleic Acids Res.
, vol.46
, pp. D836-D842
-
-
Smith, C.L.1
Blake, J.A.2
Kadin, J.A.3
Richardson, J.E.4
Bult, C.J.5
-
31
-
-
78651332286
-
Pathway commons, a web resource for biological pathway data
-
Cerami, E.G., Gross, B.E., Demir, E., Rodchenkov, I., Babur, O., Anwar, N., Schultz, N., Bader, G.D. and Sander, C. (2011) Pathway commons, a web resource for biological pathway data. Nucleic Acids Res., 39, D685-D690.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D685-D690
-
-
Cerami, E.G.1
Gross, B.E.2
Demir, E.3
Rodchenkov, I.4
Babur, O.5
Anwar, N.6
Schultz, N.7
Bader, G.D.8
Sander, C.9
-
32
-
-
85021857514
-
The STRING database in 2017: Quality-controlled protein-protein association networks, made broadly accessible
-
Szklarczyk, D., Morris, J.H., Cook, H., Kuhn, M., Wyder, S., Simonovic, M., Santos, A., Doncheva, N.T., Roth, A., Bork, P. et al. (2017) The STRING database in 2017: Quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res., 45, D362-D368.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D362-D368
-
-
Szklarczyk, D.1
Morris, J.H.2
Cook, H.3
Kuhn, M.4
Wyder, S.5
Simonovic, M.6
Santos, A.7
Doncheva, N.T.8
Roth, A.9
Bork, P.10
-
33
-
-
85040457387
-
Global landscape of cell envelope protein complexes in Escherichia coli
-
Babu, M., Bundalovic-Torma, C., Calmettes, C., Phanse, S., Zhang, Q., Jiang, Y., Minic, Z., Kim, S., Mehla, J., Gagarinova, A. et al. (2018) Global landscape of cell envelope protein complexes in Escherichia coli. Nat. Biotechnol., 36, 103-112.
-
(2018)
Nat. Biotechnol.
, vol.36
, pp. 103-112
-
-
Babu, M.1
Bundalovic-Torma, C.2
Calmettes, C.3
Phanse, S.4
Zhang, Q.5
Jiang, Y.6
Minic, Z.7
Kim, S.8
Mehla, J.9
Gagarinova, A.10
-
34
-
-
84989216655
-
A global genetic interaction network maps a wiring diagram of cellular function
-
Costanzo, M., VanderSluis, B., Koch, E.N., Baryshnikova, A., Pons, C., Tan, G., Wang, W., Usaj, M., Hanchard, J., Lee, S.D. et al. (2016) A global genetic interaction network maps a wiring diagram of cellular function. Science, 353, aaf1420.
-
(2016)
Science
, vol.353
, pp. aaf1420
-
-
Costanzo, M.1
VanderSluis, B.2
Koch, E.N.3
Baryshnikova, A.4
Pons, C.5
Tan, G.6
Wang, W.7
Usaj, M.8
Hanchard, J.9
Lee, S.D.10
-
35
-
-
85045545118
-
Systematic analysis of complex genetic interactions
-
Kuzmin, E., VanderSluis, B., Wang, W., Tan, G., Deshpande, R., Chen, Y., Usaj, M., Balint, A., Mattiazzi Usaj, M., van Leeuwen, J. et al. (2018) Systematic analysis of complex genetic interactions. Science, 360, eaao1729.
-
(2018)
Science
, vol.360
, pp. eaao1729
-
-
Kuzmin, E.1
VanderSluis, B.2
Wang, W.3
Tan, G.4
Deshpande, R.5
Chen, Y.6
Usaj, M.7
Balint, A.8
Mattiazzi Usaj, M.9
Van Leeuwen, J.10
-
36
-
-
85019703671
-
Architecture of the human interactome defines protein communities and disease networks
-
Huttlin, E.L., Bruckner, R.J., Paulo, J.A., Cannon, J.R., Ting, L., Baltier, K., Colby, G., Gebreab, F., Gygi, M.P., Parzen, H. et al. (2017) Architecture of the human interactome defines protein communities and disease networks. Nature, 545, 505-509.
-
(2017)
Nature
, vol.545
, pp. 505-509
-
-
Huttlin, E.L.1
Bruckner, R.J.2
Paulo, J.A.3
Cannon, J.R.4
Ting, L.5
Baltier, K.6
Colby, G.7
Gebreab, F.8
Gygi, M.P.9
Parzen, H.10
-
37
-
-
85032887880
-
Distributed smoothed tree kernel for protein-protein interaction extraction from the biomedical literature
-
Murugesan, G., Abdulkadhar, S. and Natarajan, J. (2017) Distributed smoothed tree kernel for protein-protein interaction extraction from the biomedical literature. PLoS One, 12, e0187379.
-
(2017)
PLoS One
, vol.12
-
-
Murugesan, G.1
Abdulkadhar, S.2
Natarajan, J.3
-
38
-
-
73349085604
-
Recurated protein interaction datasets
-
Salwinski, L., Licata, L., Winter, A., Thorneycroft, D., Khadake, J., Ceol, A., Aryamontri, A.C., Oughtred, R., Livstone, M., Boucher, L. et al. (2009) Recurated protein interaction datasets. Nat. Methods, 6, 860-861.
-
(2009)
Nat. Methods
, vol.6
, pp. 860-861
-
-
Salwinski, L.1
Licata, L.2
Winter, A.3
Thorneycroft, D.4
Khadake, J.5
Ceol, A.6
Aryamontri, A.C.7
Oughtred, R.8
Livstone, M.9
Boucher, L.10
-
39
-
-
85037713952
-
NeXtA5: Accelerating annotation of articles via automated approaches in neXtProt
-
Mottin, L., Gobeill, J., Pasche, E., Michel, P.A., Cusin, I., Gaudet, P. and Ruch, P. (2016) neXtA5: accelerating annotation of articles via automated approaches in neXtProt. Database (Oxford), 2016, baw098.
-
(2016)
Database (Oxford)
, vol.2016
, pp. baw098
-
-
Mottin, L.1
Gobeill, J.2
Pasche, E.3
Michel, P.A.4
Cusin, I.5
Gaudet, P.6
Ruch, P.7
-
40
-
-
33947304181
-
Overview of BioCreAtIvE: Critical assessment of information extraction for biology
-
Hirschman, L., Yeh, A., Blaschke, C. and Valencia, A. (2005) Overview of BioCreAtIvE: critical assessment of information extraction for biology. BMC Bioinformatics, 6, S1.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S1
-
-
Hirschman, L.1
Yeh, A.2
Blaschke, C.3
Valencia, A.4
-
41
-
-
85016158721
-
The BioC-BioGRID corpus: Full text articles annotated for curation of protein-protein and genetic interactions
-
Islamaj Dogan, R., Kim, S., Chatr-Aryamontri, A., Chang, C.S., Oughtred, R., Rust, J., Wilbur, W.J., Comeau, D.C., Dolinski, K. and Tyers, M. (2017) The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions. Database (Oxford), 2017, baw147.
-
(2017)
Database (Oxford)
, vol.2017
, pp. baw147
-
-
Islamaj Dogan, R.1
Kim, S.2
Chatr-Aryamontri, A.3
Chang, C.S.4
Oughtred, R.5
Rust, J.6
Wilbur, W.J.7
Comeau, D.C.8
Dolinski, K.9
Tyers, M.10
-
42
-
-
80053411166
-
Classifying protein-protein interaction articles using word and syntactic features
-
Kim, S. and Wilbur, W.J. (2011) Classifying protein-protein interaction articles using word and syntactic features. BMC Bioinformatics, 12, S9.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S9
-
-
Kim, S.1
Wilbur, W.J.2
-
43
-
-
85036639165
-
Mass spectrometry techniques for studying the ubiquitin system
-
Heap, R.E., Gant, M.S., Lamoliatte, F., Peltier, J. and Trost, M. (2017) Mass spectrometry techniques for studying the ubiquitin system. Biochem. Soc. Trans., 45, 1137-1148.
-
(2017)
Biochem. Soc. Trans.
, vol.45
, pp. 1137-1148
-
-
Heap, R.E.1
Gant, M.S.2
Lamoliatte, F.3
Peltier, J.4
Trost, M.5
-
44
-
-
77956611048
-
Brain tumor stem cells: The cancer stem cell hypothesis writ large
-
Dirks, P.B. (2010) Brain tumor stem cells: the cancer stem cell hypothesis writ large. Mol. Oncol., 4, 420-430.
-
(2010)
Mol. Oncol.
, vol.4
, pp. 420-430
-
-
Dirks, P.B.1
-
45
-
-
84885074034
-
The somatic genomic landscape of glioblastoma
-
Brennan, C.W., Verhaak, R.G., McKenna, A., Campos, B., Noushmehr, H., Salama, S.R., Zheng, S., Chakravarty, D., Sanborn, J.Z., Berman, S.H. et al. (2013) The somatic genomic landscape of glioblastoma. Cell, 155, 462-477.
-
(2013)
Cell
, vol.155
, pp. 462-477
-
-
Brennan, C.W.1
Verhaak, R.G.2
McKenna, A.3
Campos, B.4
Noushmehr, H.5
Salama, S.R.6
Zheng, S.7
Chakravarty, D.8
Sanborn, J.Z.9
Berman, S.H.10
-
46
-
-
85030706440
-
Integrated molecular Meta-Analysis of 1,000 pediatric High-Grade and diffuse intrinsic pontine glioma
-
Mackay, A., Burford, A., Carvalho, D., Izquierdo, E., Fazal-Salom, J., Taylor, K.R., Bjerke, L., Clarke, M., Vinci, M., Nandhabalan, M. et al. (2017) Integrated molecular Meta-Analysis of 1,000 pediatric High-Grade and diffuse intrinsic pontine glioma. Cancer Cell, 32, 520-537.
-
(2017)
Cancer Cell
, vol.32
, pp. 520-537
-
-
Mackay, A.1
Burford, A.2
Carvalho, D.3
Izquierdo, E.4
Fazal-Salom, J.5
Taylor, K.R.6
Bjerke, L.7
Clarke, M.8
Vinci, M.9
Nandhabalan, M.10
-
47
-
-
85042377713
-
Fanconi Anaemia and cancer: An intricate relationship
-
Nalepa, G. and Clapp, D.W. (2018) Fanconi Anaemia and cancer: An intricate relationship. Nat. Rev. Cancer, 18, 168-185.
-
(2018)
Nat. Rev. Cancer
, vol.18
, pp. 168-185
-
-
Nalepa, G.1
Clapp, D.W.2
-
48
-
-
85047247050
-
Genetic testing of maturity-onset diabetes of the young current status and future perspectives
-
Firdous, P., Nissar, K., Ali, S., Ganai, B.A., Shabir, U., Hassan, T. and Masoodi, S.R. (2018) Genetic testing of maturity-onset diabetes of the young current status and future perspectives. Front Endocrinol. (Lausanne), 9, 253.
-
(2018)
Front Endocrinol. (Lausanne)
, vol.9
, pp. 253
-
-
Firdous, P.1
Nissar, K.2
Ali, S.3
Ganai, B.A.4
Shabir, U.5
Hassan, T.6
Masoodi, S.R.7
-
49
-
-
78649322855
-
Maturity-onset diabetes of the young (MODY): How many cases are we missing?
-
Shields, B.M., Hicks, S., Shepherd, M.H., Colclough, K., Hattersley, A.T. and Ellard, S. (2010) Maturity-onset diabetes of the young (MODY): How many cases are we missing? Diabetologia, 53, 2504-2508.
-
(2010)
Diabetologia
, vol.53
, pp. 2504-2508
-
-
Shields, B.M.1
Hicks, S.2
Shepherd, M.H.3
Colclough, K.4
Hattersley, A.T.5
Ellard, S.6
-
50
-
-
85007232656
-
The Bio-Analytic resource for plant biology
-
Waese, J. and Provart, N.J. (2017) The Bio-Analytic resource for plant biology. Methods Mol. Biol., 1533, 119-148.
-
(2017)
Methods Mol. Biol.
, vol.1533
, pp. 119-148
-
-
Waese, J.1
Provart, N.J.2
-
51
-
-
85016166168
-
Expansion of the Gene Ontology knowledgebase and resources
-
The Gene Ontology Consortium. (2017) Expansion of the Gene Ontology knowledgebase and resources. Nucleic Acids Res., 45, D331-D338.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D331-D338
-
-
-
52
-
-
75549087626
-
Saccharomyces Genome Database provides mutant phenotype data
-
Engel, S.R., Balakrishnan, R., Binkley, G., Christie, K.R., Costanzo, M.C., Dwight, S.S., Fisk, D.G., Hirschman, J.E., Hitz, B.C., Hong, E.L. et al. (2010) Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res., 38, D433-D436.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D433-D436
-
-
Engel, S.R.1
Balakrishnan, R.2
Binkley, G.3
Christie, K.R.4
Costanzo, M.C.5
Dwight, S.S.6
Fisk, D.G.7
Hirschman, J.E.8
Hitz, B.C.9
Hong, E.L.10
-
53
-
-
84856316836
-
Uberon, an integrative multi-species anatomy ontology
-
Mungall, C.J., Torniai, C., Gkoutos, G.V., Lewis, S.E. and Haendel, M.A. (2012) Uberon, an integrative multi-species anatomy ontology. Genome Biol., 13, R5.
-
(2012)
Genome Biol.
, vol.13
, pp. R5
-
-
Mungall, C.J.1
Torniai, C.2
Gkoutos, G.V.3
Lewis, S.E.4
Haendel, M.A.5
-
54
-
-
84937523757
-
The human phenotype ontology: Semantic unification of common and rare disease
-
Groza, T., Kohler, S., Moldenhauer, D., Vasilevsky, N., Baynam, G., Zemojtel, T., Schriml, L.M., Kibbe, W.A., Schofield, P.N., Beck, T. et al. (2015) The human phenotype ontology: Semantic unification of common and rare disease. Am. J. Hum. Genet., 97, 111-124.
-
(2015)
Am. J. Hum. Genet.
, vol.97
, pp. 111-124
-
-
Groza, T.1
Kohler, S.2
Moldenhauer, D.3
Vasilevsky, N.4
Baynam, G.5
Zemojtel, T.6
Schriml, L.M.7
Kibbe, W.A.8
Schofield, P.N.9
Beck, T.10
-
55
-
-
84981508206
-
Navigating the phenotype frontier: The Monarch Initiative
-
McMurry, J.A., Kohler, S., Washington, N.L., Balhoff, J.P., Borromeo, C., Brush, M., Carbon, S., Conlin, T., Dunn, N., Engelstad, M. et al. (2016) Navigating the phenotype frontier: the Monarch Initiative. Genetics, 203, 1491-1495.
-
(2016)
Genetics
, vol.203
, pp. 1491-1495
-
-
McMurry, J.A.1
Kohler, S.2
Washington, N.L.3
Balhoff, J.P.4
Borromeo, C.5
Brush, M.6
Carbon, S.7
Conlin, T.8
Dunn, N.9
Engelstad, M.10
-
56
-
-
84976897983
-
STITCH 5: Augmenting protein-chemical interaction networks with tissue and affinity data
-
Szklarczyk, D., Santos, A., von Mering, C., Jensen, L.J., Bork, P. and Kuhn, M. (2016) STITCH 5: Augmenting protein-chemical interaction networks with tissue and affinity data. Nucleic Acids Res., 44, D380-D384.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D380-D384
-
-
Szklarczyk, D.1
Santos, A.2
Von Mering, C.3
Jensen, L.J.4
Bork, P.5
Kuhn, M.6
-
57
-
-
84988589217
-
Analyzing and interpreting genome data at the network level with ConsensusPathDB
-
Herwig, R., Hardt, C., Lienhard, M. and Kamburov, A. (2016) Analyzing and interpreting genome data at the network level with ConsensusPathDB. Nat. Protoc., 11, 1889-1907.
-
(2016)
Nat. Protoc.
, vol.11
, pp. 1889-1907
-
-
Herwig, R.1
Hardt, C.2
Lienhard, M.3
Kamburov, A.4
-
58
-
-
84857840354
-
SuperTarget goes quantitative: Update on drug-target interactions
-
Hecker, N., Ahmed, J., von Eichborn, J., Dunkel, M., Macha, K., Eckert, A., Gilson, M.K., Bourne, P.E. and Preissner, R. (2012) SuperTarget goes quantitative: Update on drug-target interactions. Nucleic Acids Res., 40, D1113-D1117.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D1113-D1117
-
-
Hecker, N.1
Ahmed, J.2
Von Eichborn, J.3
Dunkel, M.4
Macha, K.5
Eckert, A.6
Gilson, M.K.7
Bourne, P.E.8
Preissner, R.9
-
59
-
-
84891799734
-
The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases
-
Orchard, S., Ammari, M., Aranda, B., Breuza, L., Briganti, L., Broackes-Carter, F., Campbell, N.H., Chavali, G., Chen, C., del-Toro, N. et al. (2014) The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res., 42, D358-D363.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D358-D363
-
-
Orchard, S.1
Ammari, M.2
Aranda, B.3
Breuza, L.4
Briganti, L.5
Broackes-Carter, F.6
Campbell, N.H.7
Chavali, G.8
Chen, C.9
Del-Toro, N.10
-
60
-
-
85040924244
-
DrugBank 5.0: A major update to the DrugBank database for 2018
-
Wishart, D.S., Feunang, Y.D., Guo, A.C., Lo, E.J., Marcu, A., Grant, J.R., Sajed, T., Johnson, D., Li, C., Sayeeda, Z. et al. (2018) DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res., 46, D1074-D1082.
-
(2018)
Nucleic Acids Res.
, vol.46
, pp. D1074-D1082
-
-
Wishart, D.S.1
Feunang, Y.D.2
Guo, A.C.3
Lo, E.J.4
Marcu, A.5
Grant, J.R.6
Sajed, T.7
Johnson, D.8
Li, C.9
Sayeeda, Z.10
-
61
-
-
84976902303
-
BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology
-
Gilson, M.K., Liu, T., Baitaluk, M., Nicola, G., Hwang, L. and Chong, J. (2016) BindingDB in 2015: a public database for medicinal chemistry, computational chemistry and systems pharmacology. Nucleic Acids Res., 44, D1045-D1053.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D1045-D1053
-
-
Gilson, M.K.1
Liu, T.2
Baitaluk, M.3
Nicola, G.4
Hwang, L.5
Chong, J.6
-
62
-
-
85016151872
-
The comparative toxicogenomics database: Update 2017
-
Davis, A.P., Grondin, C.J., Johnson, R.J., Sciaky, D., King, B.L., McMorran, R., Wiegers, J., Wiegers, T.C. and Mattingly, C.J. (2017) The comparative toxicogenomics database: update 2017. Nucleic Acids Res., 45, D972-D978.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D972-D978
-
-
Davis, A.P.1
Grondin, C.J.2
Johnson, R.J.3
Sciaky, D.4
King, B.L.5
McMorran, R.6
Wiegers, J.7
Wiegers, T.C.8
Mattingly, C.J.9
-
63
-
-
85042373869
-
PharmGKB: A worldwide resource for pharmacogenomic information
-
Barbarino, J.M., Whirl-Carrillo, M., Altman, R.B. and Klein, T.E. (2018) PharmGKB: a worldwide resource for pharmacogenomic information. Wiley Interdiscip. Rev. Syst. Biol. Med., 10, e1417.
-
(2018)
Wiley Interdiscip. Rev. Syst. Biol. Med.
, vol.10
, pp. e1417
-
-
Barbarino, J.M.1
Whirl-Carrillo, M.2
Altman, R.B.3
Klein, T.E.4
-
64
-
-
85023177336
-
Using ChEMBL web services for building applications and data processing workflows relevant to drug discovery
-
Nowotka, M.M., Gaulton, A., Mendez, D., Bento, A.P., Hersey, A. and Leach, A. (2017) Using ChEMBL web services for building applications and data processing workflows relevant to drug discovery. Expert Opin. Drug Discov., 12, 757-767.
-
(2017)
Expert Opin. Drug Discov.
, vol.12
, pp. 757-767
-
-
Nowotka, M.M.1
Gaulton, A.2
Mendez, D.3
Bento, A.P.4
Hersey, A.5
Leach, A.6
-
65
-
-
85054704355
-
Principles of ubiquitin-dependent signaling
-
Oh, E., Akopian, D. and Rape, M. (2018) Principles of ubiquitin-dependent signaling. Annu. Rev. Cell Dev. Biol., 34, 137-162.
-
(2018)
Annu. Rev. Cell Dev. Biol.
, vol.34
, pp. 137-162
-
-
Oh, E.1
Akopian, D.2
Rape, M.3
-
66
-
-
84963540125
-
Drugging the undruggables: Exploring the ubiquitin system for drug development
-
Huang, X. and Dixit, V.M. (2016) Drugging the undruggables: Exploring the ubiquitin system for drug development. Cell Res., 26, 484-498.
-
(2016)
Cell Res.
, vol.26
, pp. 484-498
-
-
Huang, X.1
Dixit, V.M.2
-
67
-
-
85021144702
-
Targeted protein degradation: From chemical biology to drug discovery
-
Cromm, P.M. and Crews, C.M. (2017) Targeted protein degradation: From chemical biology to drug discovery. Cell Chem. Biol., 24, 1181-1190.
-
(2017)
Cell Chem. Biol.
, vol.24
, pp. 1181-1190
-
-
Cromm, P.M.1
Crews, C.M.2
-
68
-
-
85033410648
-
The advantages of targeted protein degradation over inhibition: An RTK case study
-
Burslem, G.M., Smith, B.E., Lai, A.C., Jaime-Figueroa, S., McQuaid, D.C., Bondeson, D.P., Toure, M., Dong, H., Qian, Y., Wang, J. et al. (2018) The advantages of targeted protein degradation over inhibition: an RTK case study. Cell Chem. Biol., 25, 67-77.
-
(2018)
Cell Chem. Biol.
, vol.25
, pp. 67-77
-
-
Burslem, G.M.1
Smith, B.E.2
Lai, A.C.3
Jaime-Figueroa, S.4
McQuaid, D.C.5
Bondeson, D.P.6
Toure, M.7
Dong, H.8
Qian, Y.9
Wang, J.10
-
69
-
-
0033529707
-
Functional characterization of the S. Cerevisiae genome by gene deletion and parallel analysis
-
Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H. et al. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science, 285, 901-906.
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
-
70
-
-
84959475088
-
Large-scale single guide RNA library construction and use for CRISPR-Cas9-Based genetic screens
-
Wang, T., Lander, E.S. and Sabatini, D.M. (2016) Large-scale single guide RNA library construction and use for CRISPR-Cas9-Based genetic screens. Cold Spring Harb. Protoc., 2016, doi:10.1101/pdb.top086892.
-
(2016)
Cold Spring Harb. Protoc.
, vol.2016
-
-
Wang, T.1
Lander, E.S.2
Sabatini, D.M.3
-
71
-
-
85006341892
-
Genome-scale CRISPR pooled screens
-
Sanjana, N.E. (2017) Genome-scale CRISPR pooled screens. Anal. Biochem., 532, 95-99.
-
(2017)
Anal. Biochem.
, vol.532
, pp. 95-99
-
-
Sanjana, N.E.1
-
72
-
-
77951973818
-
Modeling sample variables with an experimental factor ontology
-
Malone, J., Holloway, E., Adamusiak, T., Kapushesky, M., Zheng, J., Kolesnikov, N., Zhukova, A., Brazma, A. and Parkinson, H. (2010) Modeling sample variables with an experimental factor ontology. Bioinformatics, 26, 1112-1118.
-
(2010)
Bioinformatics
, vol.26
, pp. 1112-1118
-
-
Malone, J.1
Holloway, E.2
Adamusiak, T.3
Kapushesky, M.4
Zheng, J.5
Kolesnikov, N.6
Zhukova, A.7
Brazma, A.8
Parkinson, H.9
-
73
-
-
78651302604
-
The BRENDA Tissue Ontology (BTO): The first all-integrating ontology of all organisms for enzyme sources
-
Gremse, M., Chang, A., Schomburg, I., Grote, A., Scheer, M., Ebeling, C. and Schomburg, D. (2011) The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources. Nucleic Acids Res., 39, D507-D513.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D507-D513
-
-
Gremse, M.1
Chang, A.2
Schomburg, I.3
Grote, A.4
Scheer, M.5
Ebeling, C.6
Schomburg, D.7
-
74
-
-
84902319909
-
CLO: The cell line ontology
-
Sarntivijai, S., Lin, Y., Xiang, Z., Meehan, T.F., Diehl, A.D., Vempati, U.D., Schurer, S.C., Pang, C., Malone, J., Parkinson, H. et al. (2014) CLO: the cell line ontology. J. Biomed. Semantics, 5, 37.
-
(2014)
J. Biomed. Semantics
, vol.5
, pp. 37
-
-
Sarntivijai, S.1
Lin, Y.2
Xiang, Z.3
Meehan, T.F.4
Diehl, A.D.5
Vempati, U.D.6
Schurer, S.C.7
Pang, C.8
Malone, J.9
Parkinson, H.10
-
75
-
-
84892749369
-
Genetic screens in human cells using the CRISPR-Cas9 system
-
Wang, T., Wei, J.J., Sabatini, D.M. and Lander, E.S. (2014) Genetic screens in human cells using the CRISPR-Cas9 system. Science, 343, 80-84.
-
(2014)
Science
, vol.343
, pp. 80-84
-
-
Wang, T.1
Wei, J.J.2
Sabatini, D.M.3
Lander, E.S.4
-
76
-
-
84892765883
-
Genome-scale CRISPR-Cas9 knockout screening in human cells
-
Shalem, O., Sanjana, N.E., Hartenian, E., Shi, X., Scott, D.A., Mikkelson, T., Heckl, D., Ebert, B.L., Root, D.E., Doench, J.G. et al. (2014) Genome-scale CRISPR-Cas9 knockout screening in human cells. Science, 343, 84-87.
-
(2014)
Science
, vol.343
, pp. 84-87
-
-
Shalem, O.1
Sanjana, N.E.2
Hartenian, E.3
Shi, X.4
Scott, D.A.5
Mikkelson, T.6
Heckl, D.7
Ebert, B.L.8
Root, D.E.9
Doench, J.G.10
-
77
-
-
84900861730
-
High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells
-
Zhou, Y., Zhu, S., Cai, C., Yuan, P., Li, C., Huang, Y. and Wei, W. (2014) High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells. Nature, 509, 487-491.
-
(2014)
Nature
, vol.509
, pp. 487-491
-
-
Zhou, Y.1
Zhu, S.2
Cai, C.3
Yuan, P.4
Li, C.5
Huang, Y.6
Wei, W.7
-
78
-
-
84963595182
-
BAGEL: A computational framework for identifying essential genes from pooled library screens
-
Hart, T. and Moffat, J. (2016) BAGEL: A computational framework for identifying essential genes from pooled library screens. BMC Bioinformatics, 17, 164.
-
(2016)
BMC Bioinformatics
, vol.17
, pp. 164
-
-
Hart, T.1
Moffat, J.2
-
79
-
-
84974588043
-
Systematic comparison of CRISPR/Cas9 and RNAi screens for essential genes
-
Morgens, D.W., Deans, R.M., Li, A. and Bassik, M.C. (2016) Systematic comparison of CRISPR/Cas9 and RNAi screens for essential genes. Nat. Biotechnol., 34, 634-636.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 634-636
-
-
Morgens, D.W.1
Deans, R.M.2
Li, A.3
Bassik, M.C.4
-
80
-
-
85035771254
-
Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells
-
Meyers, R.M., Bryan, J.G., McFarland, J.M., Weir, B.A., Sizemore, A.E., Xu, H., Dharia, N.V., Montgomery, P.G., Cowley, G.S., Pantel, S. et al. (2017) Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells. Nat. Genet., 49, 1779-1784.
-
(2017)
Nat. Genet.
, vol.49
, pp. 1779-1784
-
-
Meyers, R.M.1
Bryan, J.G.2
McFarland, J.M.3
Weir, B.A.4
Sizemore, A.E.5
Xu, H.6
Dharia, N.V.7
Montgomery, P.G.8
Cowley, G.S.9
Pantel, S.10
-
81
-
-
84996567029
-
MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens
-
Li, W., Xu, H., Xiao, T., Cong, L., Love, M.I., Zhang, F., Irizarry, R.A., Liu, J.S., Brown, M. and Liu, X.S. (2014) MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. Genome Biol., 15, 554.
-
(2014)
Genome Biol.
, vol.15
, pp. 554
-
-
Li, W.1
Xu, H.2
Xiao, T.3
Cong, L.4
Love, M.I.5
Zhang, F.6
Irizarry, R.A.7
Liu, J.S.8
Brown, M.9
Liu, X.S.10
-
82
-
-
85038421356
-
A High-Resolution Genome-Wide CRISPR/Cas9 viability screen reveals structural features and contextual diversity of the human cell-essential proteome
-
Bertomeu, T., Coulombe-Huntington, J., Chatr-Aryamontri, A., Bourdages, K.G., Coyaud, E., Raught, B., Xia, Y. and Tyers, M. (2018) A High-Resolution Genome-Wide CRISPR/Cas9 viability screen reveals structural features and contextual diversity of the human cell-essential proteome. Mol. Cell Biol., 38, e00302-17.
-
(2018)
Mol. Cell Biol.
, vol.38
, pp. e00302-e00317
-
-
Bertomeu, T.1
Coulombe-Huntington, J.2
Chatr-Aryamontri, A.3
Bourdages, K.G.4
Coyaud, E.5
Raught, B.6
Xia, Y.7
Tyers, M.8
-
83
-
-
85016113248
-
GenomeCRISPR - A database for high-throughput CRISPR/Cas9 screens
-
Rauscher, B., Heigwer, F., Breinig, M., Winter, J. and Boutros, M. (2017) GenomeCRISPR - a database for high-throughput CRISPR/Cas9 screens. Nucleic Acids Res., 45, D679-D686.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D679-D686
-
-
Rauscher, B.1
Heigwer, F.2
Breinig, M.3
Winter, J.4
Boutros, M.5
-
84
-
-
85040918329
-
PICKLES: The database of pooled in-vitro CRISPR knockout library essentiality screens
-
Lenoir, W.F., Lim, T.L. and Hart, T. (2018) PICKLES: the database of pooled in-vitro CRISPR knockout library essentiality screens. Nucleic Acids Res, 46, D776-D780.
-
(2018)
Nucleic Acids Res
, vol.46
, pp. D776-D780
-
-
Lenoir, W.F.1
Lim, T.L.2
Hart, T.3
-
85
-
-
77953077420
-
A global protein kinase and phosphatase interaction network in yeast
-
Breitkreutz, A., Choi, H., Sharom, J.R., Boucher, L., Neduva, V., Larsen, B., Lin, Z.Y., Breitkreutz, B.J., Stark, C., Liu, G. et al. (2010) A global protein kinase and phosphatase interaction network in yeast. Science, 328, 1043-1046.
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
Boucher, L.4
Neduva, V.5
Larsen, B.6
Lin, Z.Y.7
Breitkreutz, B.J.8
Stark, C.9
Liu, G.10
-
86
-
-
84885896190
-
The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: Version 2.0 update
-
Sadowski, I., Breitkreutz, B.J., Stark, C., Su, T.C., Dahabieh, M., Raithatha, S., Bernhard, W., Oughtred, R., Dolinski, K., Barreto, K. et al. (2013) The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update. Database (Oxford), 2013, bat026.
-
(2013)
Database (Oxford)
, vol.2013
, pp. bat026
-
-
Sadowski, I.1
Breitkreutz, B.J.2
Stark, C.3
Su, T.C.4
Dahabieh, M.5
Raithatha, S.6
Bernhard, W.7
Oughtred, R.8
Dolinski, K.9
Barreto, K.10
-
87
-
-
84868368743
-
Using ProHits to store, annotate, and analyze affinity purification-mass spectrometry (AP-MS) data
-
Liu, G., Zhang, J., Choi, H., Lambert, J.P., Srikumar, T., Larsen, B., Nesvizhskii, A.I., Raught, B., Tyers, M. and Gingras, A.C. (2012) Using ProHits to store, annotate, and analyze affinity purification-mass spectrometry (AP-MS) data. Curr. Protoc. Bioinformatics, 8, doi:10.1002/0471250953.bi0816s39.
-
(2012)
Curr. Protoc. Bioinformatics
, vol.8
-
-
Liu, G.1
Zhang, J.2
Choi, H.3
Lambert, J.P.4
Srikumar, T.5
Larsen, B.6
Nesvizhskii, A.I.7
Raught, B.8
Tyers, M.9
Gingras, A.C.10
-
88
-
-
84883564053
-
A new reference implementation of the PSICQUIC web service
-
del-Toro, N., Dumousseau, M., Orchard, S., Jimenez, R.C., Galeota, E., Launay, G., Goll, J., Breuer, K., Ono, K., Salwinski, L. et al. (2013) A new reference implementation of the PSICQUIC web service. Nucleic Acids Res., 41, W601-W606.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. W601-W606
-
-
Del-Toro, N.1
Dumousseau, M.2
Orchard, S.3
Jimenez, R.C.4
Galeota, E.5
Launay, G.6
Goll, J.7
Breuer, K.8
Ono, K.9
Salwinski, L.10
-
89
-
-
77954269901
-
The GeneMANIA prediction server: Biological network integration for gene prioritization and predicting gene function
-
Warde-Farley, D., Donaldson, S.L., Comes, O., Zuberi, K., Badrawi, R., Chao, P., Franz, M., Grouios, C., Kazi, F., Lopes, C.T. et al. (2010) The GeneMANIA prediction server: Biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res., 38, W214-W220.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W214-W220
-
-
Warde-Farley, D.1
Donaldson, S.L.2
Comes, O.3
Zuberi, K.4
Badrawi, R.5
Chao, P.6
Franz, M.7
Grouios, C.8
Kazi, F.9
Lopes, C.T.10
-
90
-
-
84876581893
-
InnateDB: Systems biology of innate immunity and beyond-recent updates and continuing curation
-
Breuer, K., Foroushani, A.K., Laird, M.R., Chen, C., Sribnaia, A., Lo, R., Winsor, G.L., Hancock, R.E., Brinkman, F.S. and Lynn, D.J. (2013) InnateDB: systems biology of innate immunity and beyond-recent updates and continuing curation. Nucleic Acids Res., 41, D1228-D1233.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D1228-D1233
-
-
Breuer, K.1
Foroushani, A.K.2
Laird, M.R.3
Chen, C.4
Sribnaia, A.5
Lo, R.6
Winsor, G.L.7
Hancock, R.E.8
Brinkman, F.S.9
Lynn, D.J.10
-
91
-
-
85040910350
-
FlyAtlas 2: A new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
-
Leader, D.P., Krause, S.A., Pandit, A., Davies, S.A. and Dow, J.A.T. (2018) FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data. Nucleic Acids Res., 46, D809-D815.
-
(2018)
Nucleic Acids Res.
, vol.46
, pp. D809-D815
-
-
Leader, D.P.1
Krause, S.A.2
Pandit, A.3
Davies, S.A.4
Dow, J.A.T.5
-
92
-
-
84951102783
-
NDEx, the network data exchange
-
Pratt, D., Chen, J., Welker, D., Rivas, R., Pillich, R., Rynkov, V., Ono, K., Miello, C., Hicks, L., Szalma, S. et al. (2015) NDEx, the network data exchange. Cell Syst., 1, 302-305.
-
(2015)
Cell Syst.
, vol.1
, pp. 302-305
-
-
Pratt, D.1
Chen, J.2
Welker, D.3
Rivas, R.4
Pillich, R.5
Rynkov, V.6
Ono, K.7
Miello, C.8
Hicks, L.9
Szalma, S.10
-
93
-
-
84953318247
-
Use of the BioGRID database for analysis of yeast protein and genetic interactions
-
Oughtred, R., Chatr-aryamontri, A., Breitkreutz, B.J., Chang, C.S., Rust, J.M., Theesfeld, C.L., Heinicke, S., Breitkreutz, A., Chen, D., Hirschman, J. et al. (2016) Use of the BioGRID database for analysis of yeast protein and genetic interactions. Cold Spring Harb. Protoc., 2016, doi:10.1101/pdb.prot088880.
-
(2016)
Cold Spring Harb. Protoc.
, vol.2016
-
-
Oughtred, R.1
Chatr-Aryamontri, A.2
Breitkreutz, B.J.3
Chang, C.S.4
Rust, J.M.5
Theesfeld, C.L.6
Heinicke, S.7
Breitkreutz, A.8
Chen, D.9
Hirschman, J.10
-
94
-
-
84953291757
-
BioGRID: A resource for studying biological interactions in yeast
-
Oughtred, R., Chatr-aryamontri, A., Breitkreutz, B.J., Chang, C.S., Rust, J.M., Theesfeld, C.L., Heinicke, S., Breitkreutz, A., Chen, D., Hirschman, J. et al. (2016) BioGRID: a resource for studying biological interactions in yeast. Cold Spring Harb. Protoc., 2016, doi:10.1101/pdb.top080754.
-
(2016)
Cold Spring Harb. Protoc.
, vol.2016
-
-
Oughtred, R.1
Chatr-Aryamontri, A.2
Breitkreutz, B.J.3
Chang, C.S.4
Rust, J.M.5
Theesfeld, C.L.6
Heinicke, S.7
Breitkreutz, A.8
Chen, D.9
Hirschman, J.10
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