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Volumn 45, Issue D1, 2017, Pages D592-D596

The Candida Genome Database (CGD): Incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARTICLE; CANDIDA; CHROMOSOME; DATA ANALYSIS SOFTWARE; DATA PROCESSING; DIPLOIDY; FUNGAL GENOME; GENE SEQUENCE; GENETIC DATABASE; HIGH THROUGHPUT SEQUENCING; INFORMATION DISSEMINATION; MICROBIAL COMMUNITY; NONHUMAN; ONLINE SYSTEM; PATHOGENESIS; PROCESS OPTIMIZATION; RNA SEQUENCE; BIOLOGY; CHEMISTRY; GENETICS; GENOMICS; MOLECULAR GENETICS; NUCLEIC ACID DATABASE; OPEN READING FRAME; PROCEDURES; SOFTWARE; WEB BROWSER;

EID: 85016105655     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw924     Document Type: Article
Times cited : (277)

References (43)
  • 2
    • 84905183060 scopus 로고    scopus 로고
    • Candida albicans: A model organism for studying fungal pathogens
    • Kabir, M.A., Hussain, M.A. and Ahmad, Z. (2012) Candida albicans: a model organism for studying fungal pathogens. ISRN Microbiol., 2012, 1-12.
    • (2012) ISRN Microbiol. , vol.2012 , pp. 1-12
    • Kabir, M.A.1    Hussain, M.A.2    Ahmad, Z.3
  • 3
    • 33846466508 scopus 로고    scopus 로고
    • Epidemiology of invasive candidiasis: A persistent public health problem
    • Pfaller, M.A. and Diekema, D.J. (2007) Epidemiology of invasive candidiasis: a persistent public health problem. Clin. Microbiol. Rev., 20, 133-163.
    • (2007) Clin. Microbiol. Rev. , vol.20 , pp. 133-163
    • Pfaller, M.A.1    Diekema, D.J.2
  • 5
    • 79953181947 scopus 로고    scopus 로고
    • Candida bloodstream infections in intensive care units: Analysis of the extended prevalence of infection in intensive care unit study
    • and Extended Prevalence of Infection in, I.C.U.S.G.o.I.
    • Kett, D.H., Azoulay, E., Echeverria, P.M., Vincent, J.L. and Extended Prevalence of Infection in, I.C.U.S.G.o.I. (2011) Candida bloodstream infections in intensive care units: analysis of the extended prevalence of infection in intensive care unit study. Crit. CareMed., 39, 665-670.
    • (2011) Crit. CareMed. , vol.39 , pp. 665-670
    • Kett, D.H.1    Azoulay, E.2    Echeverria, P.M.3    Vincent, J.L.4
  • 6
    • 0028883883 scopus 로고
    • Opportunistic candidiasis: An epidemic of the 1980s
    • Fisher-Hoch, S.P. and Hutwagner, L. (1995) Opportunistic candidiasis: an epidemic of the 1980s. Clin. Infect. Dis., 21, 897-904.
    • (1995) Clin. Infect. Dis. , vol.21 , pp. 897-904
    • Fisher-Hoch, S.P.1    Hutwagner, L.2
  • 7
    • 0031889193 scopus 로고    scopus 로고
    • Emerging targets for the development of novel antifungal therapeutics
    • Groll, A.H., De Lucca, A.J. andWalsh, T.J. (1998) Emerging targets for the development of novel antifungal therapeutics. Trends Microbiol., 6, 117-124.
    • (1998) Trends Microbiol. , vol.6 , pp. 117-124
    • Groll, A.H.1    De Lucca, A.J.2    Walsh, T.J.3
  • 8
    • 84874217979 scopus 로고    scopus 로고
    • Candida albicans pathogenicity mechanisms
    • Mayer, F.L., Wilson, D. and Hube, B. (2013) Candida albicans pathogenicity mechanisms. Virulence, 4, 119-128.
    • (2013) Virulence , vol.4 , pp. 119-128
    • Mayer, F.L.1    Wilson, D.2    Hube, B.3
  • 9
    • 84865605029 scopus 로고    scopus 로고
    • A review of Candida species causing blood stream infection
    • Giri, S. and Kindo, A.J. (2012) A review of Candida species causing blood stream infection. Indian J. Med. Microbiol., 30, 270-278.
    • (2012) Indian J. Med. Microbiol. , vol.30 , pp. 270-278
    • Giri, S.1    Kindo, A.J.2
  • 10
    • 41949123373 scopus 로고    scopus 로고
    • Management of candidiasis in the intensive care unit
    • Schelenz, S. (2008) Management of candidiasis in the intensive care unit. J. Antimicrob. Chemother., 61(Suppl. 1), i31-i34.
    • (2008) J. Antimicrob. Chemother. , vol.61 , pp. i31-i34
    • Schelenz, S.1
  • 12
    • 84860476526 scopus 로고    scopus 로고
    • Invasive fungal infections in patients with cancer in the Intensive Care Unit
    • Sipsas, N.V. and Kontoyiannis, D.P. (2012) Invasive fungal infections in patients with cancer in the Intensive Care Unit. Int. J. Antimicrob. Agents, 39, 464-471.
    • (2012) Int. J. Antimicrob. Agents , vol.39 , pp. 464-471
    • Sipsas, N.V.1    Kontoyiannis, D.P.2
  • 14
    • 84867051844 scopus 로고    scopus 로고
    • Candida parapsilosis and the neonate: Epidemiology, virulence and host defense in a unique patient setting
    • Chow, B.D., Linden, J.R. and Bliss, J.M. (2012) Candida parapsilosis and the neonate: epidemiology, virulence and host defense in a unique patient setting. Expert Rev. Anti Infect. Ther., 10, 935-946.
    • (2012) Expert Rev. Anti Infect. Ther. , vol.10 , pp. 935-946
    • Chow, B.D.1    Linden, J.R.2    Bliss, J.M.3
  • 15
    • 84876324053 scopus 로고    scopus 로고
    • Two unlike cousins: Candidaalbicans and C. Glabrata infection strategies
    • Brunke, S. and Hube, B. (2013) Two unlike cousins: Candidaalbicans and C. glabrata infection strategies. Cell Microbiol., 15, 701-708.
    • (2013) Cell Microbiol. , vol.15 , pp. 701-708
    • Brunke, S.1    Hube, B.2
  • 16
    • 84866502135 scopus 로고    scopus 로고
    • The potential impact of antifungal drug resistance mechanisms on the host immune response to Candida
    • Lewis, R.E., Viale, P. and Kontoyiannis, D.P. (2012) The potential impact of antifungal drug resistance mechanisms on the host immune response to Candida. Virulence, 3, 368-376.
    • (2012) Virulence , vol.3 , pp. 368-376
    • Lewis, R.E.1    Viale, P.2    Kontoyiannis, D.P.3
  • 17
    • 84055199809 scopus 로고    scopus 로고
    • Antifungal drug resistance: Mechanisms, epidemiology, and consequences for treatment
    • Pfaller, M.A. (2012) Antifungal drug resistance: mechanisms, epidemiology, and consequences for treatment. Am. J. Med., 125, S3-S13.
    • (2012) Am. J. Med. , vol.125 , pp. S3-S13
    • Pfaller, M.A.1
  • 18
    • 0021770675 scopus 로고
    • The nucleotide sequences of the 5 S rRNAs of seven molds and a yeast and their use in studying ascomycete phylogeny
    • Chen, M.W., Anne, J., Volckaert, G., Huysmans, E., Vandenberghe, A. and De Wachter, R. (1984) The nucleotide sequences of the 5 S rRNAs of seven molds and a yeast and their use in studying ascomycete phylogeny. Nucleic Acids Res., 12, 4881-4892.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 4881-4892
    • Chen, M.W.1    Anne, J.2    Volckaert, G.3    Huysmans, E.4    Vandenberghe, A.5    De Wachter, R.6
  • 19
  • 20
    • 0036895608 scopus 로고    scopus 로고
    • Candida albicans: A molecular revolution built on lessons from budding yeast
    • Berman, J. and Sudbery, P.E. (2002) Candida albicans: a molecular revolution built on lessons from budding yeast. Nat. Rev., 3, 918-930.
    • (2002) Nat. Rev. , vol.3 , pp. 918-930
    • Berman, J.1    Sudbery, P.E.2
  • 21
    • 34250204870 scopus 로고    scopus 로고
    • Transcriptional rewiring of fungal galactose-metabolism circuitry
    • Martchenko, M., Levitin, A., Hogues, H., Nantel, A. and Whiteway, M. (2007) Transcriptional rewiring of fungal galactose-metabolism circuitry. Curr. Biol., 17, 1007-1013.
    • (2007) Curr. Biol. , vol.17 , pp. 1007-1013
    • Martchenko, M.1    Levitin, A.2    Hogues, H.3    Nantel, A.4    Whiteway, M.5
  • 22
    • 79956293316 scopus 로고    scopus 로고
    • Extensive DNA-binding specificity divergence of a conserved transcription regulator
    • Baker, C.R., Tuch, B.B. and Johnson, A.D. (2011) Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc. Natl. Acad. Sci. U.S.A., 108, 7493-7498.
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 7493-7498
    • Baker, C.R.1    Tuch, B.B.2    Johnson, A.D.3
  • 23
    • 33749173831 scopus 로고    scopus 로고
    • Evolution of alternative transcriptional circuits with identical logic
    • Tsong, A.E., Tuch, B.B., Li, H. and Johnson, A.D. (2006) Evolution of alternative transcriptional circuits with identical logic. Nature, 443, 415-420.
    • (2006) Nature , vol.443 , pp. 415-420
    • Tsong, A.E.1    Tuch, B.B.2    Li, H.3    Johnson, A.D.4
  • 25
    • 0038577154 scopus 로고    scopus 로고
    • Completion of a parasexual cycle in Candida albicans by induced chromosome loss in tetraploid strains
    • Bennett, R.J. and Johnson, A.D. (2003) Completion of a parasexual cycle in Candida albicans by induced chromosome loss in tetraploid strains. EMBO J., 22, 2505-2515.
    • (2003) EMBO J. , vol.22 , pp. 2505-2515
    • Bennett, R.J.1    Johnson, A.D.2
  • 33
    • 84883626672 scopus 로고    scopus 로고
    • Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure
    • Muzzey, D., Schwartz, K., Weissman, J.S. and Sherlock, G. (2013) Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Genome Biol., 14, R97.
    • (2013) Genome Biol. , vol.14 , pp. R97
    • Muzzey, D.1    Schwartz, K.2    Weissman, J.S.3    Sherlock, G.4
  • 34
    • 13244255321 scopus 로고    scopus 로고
    • GeneXplorer: An interactive web application for microarray data visualization and analysis
    • Rees, C.A., Demeter, J., Matese, J.C., Botstein, D. and Sherlock, G. (2004) GeneXplorer: an interactive web application for microarray data visualization and analysis. BMC Bioinformatics, 5, 141.
    • (2004) BMC Bioinformatics , vol.5 , pp. 141
    • Rees, C.A.1    Demeter, J.2    Matese, J.C.3    Botstein, D.4    Sherlock, G.5
  • 37
    • 78649240033 scopus 로고    scopus 로고
    • Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
    • Bruno, V.M., Wang, Z., Marjani, S.L., Euskirchen, G.M., Martin, J., Sherlock, G. and Snyder, M. (2010) Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq. Genome Res., 20, 1451-1458.
    • (2010) Genome Res. , vol.20 , pp. 1451-1458
    • Bruno, V.M.1    Wang, Z.2    Marjani, S.L.3    Euskirchen, G.M.4    Martin, J.5    Sherlock, G.6    Snyder, M.7
  • 39
    • 84875445030 scopus 로고    scopus 로고
    • White-opaque switching in natural MTLa/alpha isolates of Candida albicans: Evolutionary implications for roles in host adaptation, pathogenesis, and sex
    • Xie, J., Tao, L., Nobile, C.J., Tong, Y., Guan, G., Sun, Y., Cao, C., Hernday, A.D., Johnson, A.D., Zhang, L. et al. (2013) White-opaque switching in natural MTLa/alpha isolates of Candida albicans: evolutionary implications for roles in host adaptation, pathogenesis, and sex. PLoS Biol., 11, e1001525.
    • (2013) PLoS Biol. , vol.11 , pp. e1001525
    • Xie, J.1    Tao, L.2    Nobile, C.J.3    Tong, Y.4    Guan, G.5    Sun, Y.6    Cao, C.7    Hernday, A.D.8    Johnson, A.D.9    Zhang, L.10
  • 40
    • 84901854972 scopus 로고    scopus 로고
    • Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans
    • Muzzey, D., Sherlock, G. and Weissman, J.S. (2014) Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans. Genome Res., 24, 963-973.
    • (2014) Genome Res. , vol.24 , pp. 963-973
    • Muzzey, D.1    Sherlock, G.2    Weissman, J.S.3
  • 41
    • 84959537411 scopus 로고    scopus 로고
    • Identification and Characterization of Wor4, a New Transcriptional Regulator of White-Opaque Switching
    • Lohse, M.B. and Johnson, A.D. (2016) Identification and Characterization of Wor4, a New Transcriptional Regulator of White-Opaque Switching. G3 (Bethesda), 6, 721-729.
    • (2016) G3 (Bethesda) , vol.6 , pp. 721-729
    • Lohse, M.B.1    Johnson, A.D.2


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