메뉴 건너뛰기




Volumn , Issue SUPPL.39, 2012, Pages

Using ProHits to store, annotate, and analyze Affinity purification-mass spectrometry (AP-MS) Data

Author keywords

Affinity purification coupled with mass spectrometry; Data analysis; Protein protein interactions; Statistical models; Virtual machine

Indexed keywords

PROTEIN;

EID: 84868368743     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi0816s39     Document Type: Article
Times cited : (18)

References (23)
  • 3
    • 3142702204 scopus 로고    scopus 로고
    • TANDEM: Matching proteinswith tandemmass spectra
    • Craig, R. andBeavis, R.C. 2004. TANDEM:Matching proteinswith tandemmass spectra. Bioinformatics 20:1466-1467.
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 6
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J
    • Eng, J.K., McCormack, A.L., and Yates, J.R. 1994. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J. Am. Soc. Mass Spectrom. 5:976-989.
    • (1994) Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 7
    • 79551517793 scopus 로고    scopus 로고
    • Recent advances in charting protein-protein interaction: Mass spectrometry-based approaches
    • Gavin, A.C., Maeda, K., and Kuhner, S. 2011. Recent advances in charting protein-protein interaction: Mass spectrometry-based approaches. Curr. Opin. Biotechnol. 22:42-49.
    • (2011) Curr. Opin. Biotechnol. , vol.22 , pp. 42-49
    • Gavin, A.C.1    Maeda, K.2    Kuhner, S.3
  • 9
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A., Nesvizhskii, A.I., Kolker, E., and Aebersold, R. 2002. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74:5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 11
    • 54949129419 scopus 로고    scopus 로고
    • ProteoWizard: Open source software for rapid proteomics tools development
    • Kessner, D., Chambers, M., Burke, R., Agus, D., and Mallick, P. 2008. ProteoWizard: Open source software for rapid proteomics tools development. Bioinformatics 24:2534-2536.
    • (2008) Bioinformatics , vol.24 , pp. 2534-2536
    • Kessner, D.1    Chambers, M.2    Burke, R.3    Agus, D.4    Mallick, P.5
  • 16
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii, A.I., Keller, A., Kolker, E., and Aebersold, R. 2003. A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75:4646-4658.
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 18
    • 77956956487 scopus 로고    scopus 로고
    • The publication and database deposition of molecular interaction data
    • Orchard, S., Aranda, B., and Hermjakob, H. 2010. The publication and database deposition of molecular interaction data. Curr. Protoc. Protein Sci. 60:25.3.1-25.3.13.
    • (2010) Curr. Protoc. Protein Sci. , vol.60
    • Orchard, S.1    Aranda, B.2    Hermjakob, H.3
  • 19
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D.N., Pappin, D.J., Creasy, D.M., and Cottrell, J.S. 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 20
    • 84859436530 scopus 로고    scopus 로고
    • NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
    • Pruitt, K.D., Tatusova, T., Brown, G.R., and Maglott, D.R. 2012. NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy. Nucleic Acids Res. 40:D130-D135.
    • (2012) Nucleic Acids Res , vol.40
    • Pruitt, K.D.1    Tatusova, T.2    Brown, G.R.3    Maglott, D.R.4
  • 21
    • 79953713220 scopus 로고    scopus 로고
    • Label-free quantitative proteomics and SAINT analysis enable interactome mapping for the human Ser/Thr protein phosphatase 5
    • Skarra, D.V., Goudreault, M., Choi, H., Mullin,M., Nesvizhskii, A.I.,Gingras,A.C., andHonkanen, R.E. 2011. Label-free quantitative proteomics and SAINT analysis enable interactome mapping for the human Ser/Thr protein phosphatase 5. Proteomics 11:1508-1516.
    • (2011) Proteomics , vol.11 , pp. 1508-1516
    • Skarra, D.V.1    Goudreault, M.2    Choi, H.3    Mullin, M.4    Nesvizhskii, A.I.5    Gingras, A.C.6    Honkanen, R.E.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.