메뉴 건너뛰기




Volumn 107, Issue 6, 2016, Pages 481-495

Genomic methods take the plunge: Recent advances in high-throughput sequencing of marine mammals

Author keywords

Non model organisms; RADseq; RNAseq; SNP array; Target sequence capture; Whole genome sequencing

Indexed keywords

TRANSCRIPTOME;

EID: 84992016870     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esw044     Document Type: Review
Times cited : (46)

References (205)
  • 1
    • 77958134755 scopus 로고    scopus 로고
    • Ascertainment biases in SNP chips affect measures of population divergence
    • Albrechtsen A, Nielsen FC, Nielsen R. 2010. Ascertainment biases in SNP chips affect measures of population divergence. Mol Biol Evol. 27:2534-2547.
    • (2010) Mol Biol Evol , vol.27 , pp. 2534-2547
    • Albrechtsen, A.1    Nielsen, F.C.2    Nielsen, R.3
  • 4
    • 84922985299 scopus 로고    scopus 로고
    • Ten years of transcriptomics in wild populations: What have we learned about their ecology and evolution?
    • Alvarez M, Schrey AW, Richards CL. 2015. Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution? Mol Ecol. 24:710-725.
    • (2015) Mol Ecol , vol.24 , pp. 710-725
    • Alvarez, M.1    Schrey, A.W.2    Richards, C.L.3
  • 5
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol. 11:R106.
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 8
    • 84896902748 scopus 로고    scopus 로고
    • Recent novel approaches for population genomics data analysis
    • Andrews KR, Luikart G. 2014. Recent novel approaches for population genomics data analysis. Mol Ecol. 23:1661-1667.
    • (2014) Mol Ecol , vol.23 , pp. 1661-1667
    • Andrews, K.R.1    Luikart, G.2
  • 10
    • 79954580250 scopus 로고    scopus 로고
    • What's so special about model organisms?
    • Ankeny RA, Leonelli S. 2011. What's so special about model organisms? Stud Hist Philos Sci. 42:313-323.
    • (2011) Stud Hist Philos Sci , vol.42 , pp. 313-323
    • Ankeny, R.A.1    Leonelli, S.2
  • 13
    • 0026332751 scopus 로고
    • The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus
    • Arnason U, Gullberg A, Widegren B. 1991. The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus. J Mol Evol. 33:556-568.
    • (1991) J Mol Evol , vol.33 , pp. 556-568
    • Arnason, U.1    Gullberg, A.2    Widegren, B.3
  • 16
    • 84871889014 scopus 로고    scopus 로고
    • Journal of Heredity adopts joint data archiving policy
    • Baker CS. 2013. Journal of Heredity adopts joint data archiving policy. J Hered. 104:1.
    • (2013) J Hered , vol.104 , pp. 1
    • Baker, C.S.1
  • 17
    • 53749102606 scopus 로고    scopus 로고
    • Natural selection on a major armor gene in threespine stickleback
    • Barrett RD, Rogers SM, Schluter D. 2008. Natural selection on a major armor gene in threespine stickleback. Science. 322:255-257.
    • (2008) Science , vol.322 , pp. 255-257
    • Barrett, R.D.1    Rogers, S.M.2    Schluter, D.3
  • 19
    • 84930082134 scopus 로고    scopus 로고
    • Demystifying computer science for molecular ecologists
    • Belcaid M, Toonen RJ. 2015. Demystifying computer science for molecular ecologists. Mol Ecol. 24:2619-2640.
    • (2015) Mol Ecol , vol.24 , pp. 2619-2640
    • Belcaid, M.1    Toonen, R.J.2
  • 21
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114-2120.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 24
    • 84941755042 scopus 로고    scopus 로고
    • Genomewide investigation of adaptation to harmful algal blooms in common bottlenose dolphins (Tursiops truncatus)
    • Cammen KM, Schultz TF, Rosel PE, Wells RS, Read AJ. 2015. Genomewide investigation of adaptation to harmful algal blooms in common bottlenose dolphins (Tursiops truncatus). Mol Ecol. 24:4697-4710.
    • (2015) Mol Ecol , vol.24 , pp. 4697-4710
    • Cammen, K.M.1    Schultz, T.F.2    Rosel, P.E.3    Wells, R.S.4    Read, A.J.5
  • 25
    • 84931957575 scopus 로고    scopus 로고
    • Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing
    • Campbell NR, Harmon SA, Narum SR. 2015. Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing. Mol Ecol Resour. 15:855-867.
    • (2015) Mol Ecol Resour , vol.15 , pp. 855-867
    • Campbell, N.R.1    Harmon, S.A.2    Narum, S.R.3
  • 30
    • 77649260327 scopus 로고    scopus 로고
    • Population differentiation as a test for selective sweeps
    • Chen H, Patterson N, Reich D. 2010. Population differentiation as a test for selective sweeps. Genome Res. 20:393-402.
    • (2010) Genome Res , vol.20 , pp. 393-402
    • Chen, H.1    Patterson, N.2    Reich, D.3
  • 32
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 21:3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 33
    • 84878459638 scopus 로고    scopus 로고
    • High degree of cryptic population differentiation in the Baltic Sea herring Clupea harengus
    • Corander J, Majander KK, Cheng L, Merilä J. 2013. High degree of cryptic population differentiation in the Baltic Sea herring Clupea harengus. Mol Ecol. 22:2931-2940.
    • (2013) Mol Ecol , vol.22 , pp. 2931-2940
    • Corander, J.1    Majander, K.K.2    Cheng, L.3    Merilä, J.4
  • 36
    • 84874409839 scopus 로고    scopus 로고
    • Detecting selection along environmental gradients: Analysis of eight methods and their effectiveness for outbreeding and selfing populations
    • De Mita S, Thuillet AC, Gay L, Ahmadi N, Manel S, Ronfort J, Vigouroux Y. 2013. Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Mol Ecol. 22:1383-1399.
    • (2013) Mol Ecol , vol.22 , pp. 1383-1399
    • De Mita, S.1    Thuillet, A.C.2    Gay, L.3    Ahmadi, N.4    Manel, S.5    Ronfort, J.6    Vigouroux, Y.7
  • 37
    • 84928365478 scopus 로고    scopus 로고
    • SNP genotyping and population genomics from expressed sequences-current advances and future possibilities
    • De Wit P, Pespeni MH, Palumbi SR. 2015. SNP genotyping and population genomics from expressed sequences-current advances and future possibilities. Mol Ecol. 24:2310-2323.
    • (2015) Mol Ecol , vol.24 , pp. 2310-2323
    • De Wit, P.1    Pespeni, M.H.2    Palumbi, S.R.3
  • 38
    • 65449140394 scopus 로고    scopus 로고
    • Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces
    • Deagle BE, Kirkwood R, Jarman SN. 2009. Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces. Mol Ecol. 18:2022-2038.
    • (2009) Mol Ecol , vol.18 , pp. 2022-2038
    • Deagle, B.E.1    Kirkwood, R.2    Jarman, S.N.3
  • 39
    • 47749147384 scopus 로고    scopus 로고
    • Morphological and molecular evidence for a stepwise evolutionary transition from teeth to baleen in mysticete whales
    • Deméré TA, McGowen MR, Berta A, Gatesy J. 2008. Morphological and molecular evidence for a stepwise evolutionary transition from teeth to baleen in mysticete whales. Syst Biol. 57:15-37.
    • (2008) Syst Biol , vol.57 , pp. 15-37
    • Deméré, T.A.1    McGowen, M.R.2    Berta, A.3    Gatesy, J.4
  • 42
    • 84903726447 scopus 로고    scopus 로고
    • PyRAD: Assembly of de novo RADseq loci for phylogenetic analysis
    • Eaton DAR. 2014. PyRAD: assembly of de novo RADseq loci for phylogenetic analysis. Bioinformatics. 30:1844-1849.
    • (2014) Bioinformatics , vol.30 , pp. 1844-1849
    • Eaton, D.A.R.1
  • 43
    • 79959300621 scopus 로고    scopus 로고
    • Applications of next generation sequencing in molecular ecology of non-model organisms
    • Ekblom R, Galindo J. 2011. Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity. 107:1-15.
    • (2011) Heredity , vol.107 , pp. 1-15
    • Ekblom, R.1    Galindo, J.2
  • 44
    • 84911882712 scopus 로고    scopus 로고
    • A field guide to whole-genome sequencing, assembly and annotation
    • Ekblom R, Wolf JBW. 2014. A field guide to whole-genome sequencing, assembly and annotation. Evol Appl. 7:1026-1042.
    • (2014) Evol Appl , vol.7 , pp. 1026-1042
    • Ekblom, R.1    Wolf, J.B.W.2
  • 45
    • 84888274008 scopus 로고    scopus 로고
    • Genome sequencing and population genomics in non-model organisms
    • Ellegren H. 2014. Genome sequencing and population genomics in non-model organisms. Trends Ecol Evol. 29:51-63.
    • (2014) Trends Ecol Evol , vol.29 , pp. 51-63
    • Ellegren, H.1
  • 49
    • 84925583343 scopus 로고    scopus 로고
    • Considerations for the use of transcriptomics in identifying the 'genes that matter' for environmental adaptation
    • Evans TG. 2015. Considerations for the use of transcriptomics in identifying the 'genes that matter' for environmental adaptation. J Exp Biol. 218:1925-1935.
    • (2015) J Exp Biol , vol.218 , pp. 1925-1935
    • Evans, T.G.1
  • 51
    • 84960093575 scopus 로고    scopus 로고
    • PHYLUCE is a software package for the analysis of conserved genomic loci
    • Faircloth BC. 2016. PHYLUCE is a software package for the analysis of conserved genomic loci. Bioinformatics. 32:786-788.
    • (2016) Bioinformatics , vol.32 , pp. 786-788
    • Faircloth, B.C.1
  • 53
    • 84899542092 scopus 로고    scopus 로고
    • On detecting incomplete soft or hard selective sweeps using haplotype structure
    • Ferrer-Admetlla A, Liang M, Korneliussen T, Nielsen R. 2014. On detecting incomplete soft or hard selective sweeps using haplotype structure. Mol Biol Evol. 31:1275-1291.
    • (2014) Mol Biol Evol , vol.31 , pp. 1275-1291
    • Ferrer-Admetlla, A.1    Liang, M.2    Korneliussen, T.3    Nielsen, R.4
  • 54
    • 70449701942 scopus 로고    scopus 로고
    • Sense from sequence reads: Methods for alignment and assembly
    • Flicek P, Birney E. 2009. Sense from sequence reads: methods for alignment and assembly. Nat Methods. 6:S6-S12.
    • (2009) Nat Methods , vol.6 , pp. S6-S12
    • Flicek, P.1    Birney, E.2
  • 59
    • 85027950312 scopus 로고    scopus 로고
    • Finding the right coverage: The impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates
    • Fountain ED, Pauli JN, Reid BN, Palsbøll PJ, Peery MZ. 2016. Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates. Mol Ecol Resour. 16:966-978.
    • (2016) Mol Ecol Resour , vol.16 , pp. 966-978
    • Fountain, E.D.1    Pauli, J.N.2    Reid, B.N.3    Palsbøll, P.J.4    Peery, M.Z.5
  • 61
    • 84900332666 scopus 로고    scopus 로고
    • NgsTools: Methods for population genetics analyses from next-generation sequencing data
    • Fumagalli M, Vieira FG, Linderoth T, Nielsen R. 2014. ngsTools: methods for population genetics analyses from next-generation sequencing data. Bioinformatics. 30:1486-1487.
    • (2014) Bioinformatics , vol.30 , pp. 1486-1487
    • Fumagalli, M.1    Vieira, F.G.2    Linderoth, T.3    Nielsen, R.4
  • 62
    • 84873648520 scopus 로고    scopus 로고
    • De novo assembly and characterization of spotted seal Phoca largha transcriptome using Illumina paired-end sequencing
    • Gao X, Han J, Lu Z, Li Y, He C. 2013. De novo assembly and characterization of spotted seal Phoca largha transcriptome using Illumina paired-end sequencing. Comp Biochem Physiol D Genom Proteom. 8:103-110.
    • (2013) Comp Biochem Physiol D Genom Proteom , vol.8 , pp. 103-110
    • Gao, X.1    Han, J.2    Lu, Z.3    Li, Y.4    He, C.5
  • 66
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Galaxy Team
    • Goecks J, Nekrutenko A, Taylor J; Galaxy Team. 2010. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11:R86.
    • (2010) Genome Biol , vol.11 , pp. R86
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 67
    • 79952788617 scopus 로고    scopus 로고
    • Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
    • Gu H, Smith ZD, Bock C, Boyle P, Gnirke A, Meissner A. 2011. Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling. Nat Protoc. 6:468-481.
    • (2011) Nat Protoc , vol.6 , pp. 468-481
    • Gu, H.1    Smith, Z.D.2    Bock, C.3    Boyle, P.4    Gnirke, A.5    Meissner, A.6
  • 68
    • 84883195757 scopus 로고    scopus 로고
    • De novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome to identify putative genes involved in the aquatic adaptation and immune response
    • Gui D, Jia K, Xia J, Yang L, Chen J, Wu Y, Yi M. 2013. De novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome to identify putative genes involved in the aquatic adaptation and immune response. PLoS One. 8:e72417.
    • (2013) PLoS One , vol.8 , pp. e72417
    • Gui, D.1    Jia, K.2    Xia, J.3    Yang, L.4    Chen, J.5    Wu, Y.6    Yi, M.7
  • 69
    • 73449149044 scopus 로고    scopus 로고
    • Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
    • Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. 2009. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet. 5:e1000695.
    • (2009) PLoS Genet , vol.5 , pp. e1000695
    • Gutenkunst, R.N.1    Hernandez, R.D.2    Williamson, S.H.3    Bustamante, C.D.4
  • 71
    • 84928981524 scopus 로고    scopus 로고
    • Fast and accurate site frequency spectrum estimation from low coverage sequence data
    • Han E, Sinsheimer JS, Novembre J. 2015. Fast and accurate site frequency spectrum estimation from low coverage sequence data. Bioinformatics. 31:720-727.
    • (2015) Bioinformatics , vol.31 , pp. 720-727
    • Han, E.1    Sinsheimer, J.S.2    Novembre, J.3
  • 72
    • 84873999086 scopus 로고    scopus 로고
    • Targeted multiplex next-generation sequencing: Advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
    • Hancock-Hanser BL, Frey A, Leslie MS, Dutton PH, Archer FI, Morin PA. 2013. Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics. Mol Ecol Resour. 13:254-268.
    • (2013) Mol Ecol Resour , vol.13 , pp. 254-268
    • Hancock-Hanser, B.L.1    Frey, A.2    Leslie, M.S.3    Dutton, P.H.4    Archer, F.I.5    Morin, P.A.6
  • 73
    • 84879671007 scopus 로고    scopus 로고
    • Inferring demographic history from a spectrum of shared haplotype lengths
    • Harris K, Nielsen R. 2013. Inferring demographic history from a spectrum of shared haplotype lengths. PLoS Genet. 9:e1003521.
    • (2013) PLoS Genet , vol.9 , pp. e1003521
    • Harris, K.1    Nielsen, R.2
  • 75
    • 0004242267 scopus 로고    scopus 로고
    • Sudbury (MA): Jones and Bartlett Publishers
    • Hedrick PW. 2000. Genetics of populations. Sudbury (MA): Jones and Bartlett Publishers.
    • (2000) Genetics of Populations
    • Hedrick, P.W.1
  • 77
    • 38649115646 scopus 로고    scopus 로고
    • Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset
    • Higdon JW, Bininda-Emonds OR, Beck RM, Ferguson SH. 2007. Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset. BMC Evol Biol. 7:216.
    • (2007) BMC Evol Biol , vol.7 , pp. 216
    • Higdon, J.W.1    Bininda-Emonds, O.R.2    Beck, R.M.3    Ferguson, S.H.4
  • 79
    • 79959215488 scopus 로고    scopus 로고
    • Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptome
    • Hoffman JI. 2011. Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptome. Mol Ecol Resour. 11:703-710.
    • (2011) Mol Ecol Resour , vol.11 , pp. 703-710
    • Hoffman, J.I.1
  • 80
    • 80051506034 scopus 로고    scopus 로고
    • A novel approach for mining polymorphic microsatellite markers in silico
    • Hoffman JI, Nichols HJ. 2011. A novel approach for mining polymorphic microsatellite markers in silico. PLoS One. 6:e23283.
    • (2011) PLoS One , vol.6 , pp. e23283
    • Hoffman, J.I.1    Nichols, H.J.2
  • 82
    • 84872685602 scopus 로고    scopus 로고
    • Transcriptome of the dead: Characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammal
    • Hoffman JI, Thorne MA, Trathan PN, Forcada J. 2013. Transcriptome of the dead: characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammal. BMC Genomics. 14:52.
    • (2013) BMC Genomics , vol.14 , pp. 52
    • Hoffman, J.I.1    Thorne, M.A.2    Trathan, P.N.3    Forcada, J.4
  • 83
    • 84865285342 scopus 로고    scopus 로고
    • Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: A case study in the Antarctic fur seal
    • Hoffman JI, Tucker R, Bridgett SJ, Clark MS, Forcada J, Slate J. 2012. Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal. Mol Ecol Resour. 12:861-872.
    • (2012) Mol Ecol Resour , vol.12 , pp. 861-872
    • Hoffman, J.I.1    Tucker, R.2    Bridgett, S.J.3    Clark, M.S.4    Forcada, J.5    Slate, J.6
  • 84
    • 77649219524 scopus 로고    scopus 로고
    • Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    • Hohenlohe PA, Bassham S, Etter PD, Stiffler N, Johnson EA, Cresko WA. 2010. Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet. 6:e1000862.
    • (2010) PLoS Genet , vol.6 , pp. e1000862
    • Hohenlohe, P.A.1    Bassham, S.2    Etter, P.D.3    Stiffler, N.4    Johnson, E.A.5    Cresko, W.A.6
  • 85
    • 84055178433 scopus 로고    scopus 로고
    • MAKER2: An annotation pipeline and genomedatabase management tool for second-generation genome projects
    • Holt C, Yandell M. 2011. MAKER2: an annotation pipeline and genomedatabase management tool for second-generation genome projects. BMC Bioinformatics. 12:491.
    • (2011) BMC Bioinformatics , vol.12 , pp. 491
    • Holt, C.1    Yandell, M.2
  • 92
    • 84924330794 scopus 로고    scopus 로고
    • Transcriptome analysis of northern elephant seal (Mirounga angustirostris) muscle tissue provides a novel molecular resource and physiological insights
    • Khudyakov JI, Preeyanon L, Champagne CD, Ortiz RM, Crocker DE. 2015b. Transcriptome analysis of northern elephant seal (Mirounga angustirostris) muscle tissue provides a novel molecular resource and physiological insights. BMC Genomics. 16:64.
    • (2015) BMC Genomics , vol.16 , pp. 64
    • Khudyakov, J.I.1    Preeyanon, L.2    Champagne, C.D.3    Ortiz, R.M.4    Crocker, D.E.5
  • 94
    • 84923163752 scopus 로고    scopus 로고
    • Genome 10K community of scientists 10K Project. The Genome a way forward
    • Koepfli KP, Paten B, O'Brien SJ; Genome 10K Community of Scientists. 2015. The Genome 10K Project: a way forward. Annu Rev Anim Biosci. 3:57-111.
    • (2015) Annu Rev Anim Biosci , vol.3 , pp. 57-111
    • Koepfli, K.P.1    Paten, B.2    O'Brien, S.J.3
  • 98
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25.
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 99
    • 84865266483 scopus 로고    scopus 로고
    • Anchored hybrid enrichment for massively high-throughput phylogenomics
    • Lemmon AR, Emme SA, Lemmon EM. 2012. Anchored hybrid enrichment for massively high-throughput phylogenomics. Syst Biol. 61:727-744.
    • (2012) Syst Biol , vol.61 , pp. 727-744
    • Lemmon, A.R.1    Emme, S.A.2    Lemmon, E.M.3
  • 100
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNASeq data with or without a reference genome
    • Li B, Dewey CN. 2011. RSEM: accurate transcript quantification from RNASeq data with or without a reference genome. BMC Bioinformatics. 12:323.
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 101
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 102
    • 79960914105 scopus 로고    scopus 로고
    • Inference of human population history from individual whole-genome sequences
    • Li H, Durbin R. 2011. Inference of human population history from individual whole-genome sequences. Nature. 475:493-496.
    • (2011) Nature , vol.475 , pp. 493-496
    • Li, H.1    Durbin, R.2
  • 104
    • 84862794744 scopus 로고    scopus 로고
    • Estimating demographic parameters from largescale population genomic data using Approximate Bayesian Computation
    • Li S, Jakobsson M. 2012. Estimating demographic parameters from largescale population genomic data using Approximate Bayesian Computation. BMC Genet. 13:22.
    • (2012) BMC Genet , vol.13 , pp. 22
    • Li, S.1    Jakobsson, M.2
  • 105
    • 85027932848 scopus 로고    scopus 로고
    • State of the art de novo assembly of human genomes from massively parallel sequencing data
    • Li Y, Hu Y, Bolund L, Wang J. 2010. State of the art de novo assembly of human genomes from massively parallel sequencing data. Hum Genomics. 4:271-277.
    • (2010) Hum Genomics , vol.4 , pp. 271-277
    • Li, Y.1    Hu, Y.2    Bolund, L.3    Wang, J.4
  • 109
    • 84929130112 scopus 로고    scopus 로고
    • Exploring population size changes using SNP frequency spectra
    • Liu X, Fu YX. 2015. Exploring population size changes using SNP frequency spectra. Nat Genet. 47:555-559.
    • (2015) Nat Genet , vol.47 , pp. 555-559
    • Liu, X.1    Fu, Y.X.2
  • 110
    • 84893242996 scopus 로고    scopus 로고
    • RNA-seq differential expression studies: More sequence or more replication?
    • Liu Y, Zhou J, White KP. 2014b. RNA-seq differential expression studies: more sequence or more replication? Bioinformatics. 30:301-304.
    • (2014) Bioinformatics , vol.30 , pp. 301-304
    • Liu, Y.1    Zhou, J.2    White, K.P.3
  • 111
    • 84899624756 scopus 로고    scopus 로고
    • Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests
    • Lotterhos KE, Whitlock MC. 2014. Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests. Mol Ecol. 23:2178-2192.
    • (2014) Mol Ecol , vol.23 , pp. 2178-2192
    • Lotterhos, K.E.1    Whitlock, M.C.2
  • 113
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love MI, Huber W, Anders S. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15:550.
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 114
    • 84893683722 scopus 로고    scopus 로고
    • On the optimal trimming of high-throughput mRNA sequence data
    • MacManes MD. 2014. On the optimal trimming of high-throughput mRNA sequence data. Front Genet. 5:13.
    • (2014) Front Genet , vol.5 , pp. 13
    • MacManes, M.D.1
  • 117
    • 84926527746 scopus 로고    scopus 로고
    • Design of a 9K illumina Bead-Chip for polar bears (Ursus maritimus) from RAD and transcriptome sequencing
    • Malenfant RM, Coltman DW, Davis CS. 2015. Design of a 9K illumina Bead-Chip for polar bears (Ursus maritimus) from RAD and transcriptome sequencing. Mol Ecol Resour. 15:587-600.
    • (2015) Mol Ecol Resour , vol.15 , pp. 587-600
    • Malenfant, R.M.1    Coltman, D.W.2    Davis, C.S.3
  • 121
    • 84856475038 scopus 로고    scopus 로고
    • Health status, infection and disease in California sea lions (Zalophus californianus) studied using a canine microarray platform and machine-learning approaches
    • Mancia A, Ryan JC, Chapman RW, Wu Q, Warr GW, Gulland FM, Van Dolah FM. 2012. Health status, infection and disease in California sea lions (Zalophus californianus) studied using a canine microarray platform and machine-learning approaches. Dev Comp Immunol. 36:629-637.
    • (2012) Dev Comp Immunol , vol.36 , pp. 629-637
    • Mancia, A.1    Ryan, J.C.2    Chapman, R.W.3    Wu, Q.4    Warr, G.W.5    Gulland, F.M.6    Van Dolah, F.M.7
  • 122
    • 44249112104 scopus 로고    scopus 로고
    • A transcriptomic analysis of the stress induced by capture-release health assessment studies in wild dolphins (Tursiops truncatus)
    • Mancia A, Warr GW, Chapman RW. 2008. A transcriptomic analysis of the stress induced by capture-release health assessment studies in wild dolphins (Tursiops truncatus). Mol Ecol. 17:2581-2589.
    • (2008) Mol Ecol , vol.17 , pp. 2581-2589
    • Mancia, A.1    Warr, G.W.2    Chapman, R.W.3
  • 123
    • 84932109367 scopus 로고    scopus 로고
    • Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
    • Mastretta-Yanes A, Arrigo N, Alvarez N, Jorgensen TH, Piñero D, Emerson BC. 2015. Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference. Mol Ecol Resour. 15:28-41.
    • (2015) Mol Ecol Resour , vol.15 , pp. 28-41
    • Mastretta-Yanes, A.1    Arrigo, N.2    Alvarez, N.3    Jorgensen, T.H.4    Piñero, D.5    Emerson, B.C.6
  • 124
    • 84859530730 scopus 로고    scopus 로고
    • Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
    • McCormack JE, Faircloth BC, Crawford NG, Gowaty PA, Brumfield RT, Glenn TC. 2012. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis. Genome Res. 22:746-754.
    • (2012) Genome Res , vol.22 , pp. 746-754
    • McCormack, J.E.1    Faircloth, B.C.2    Crawford, N.G.3    Gowaty, P.A.4    Brumfield, R.T.5    Glenn, T.C.6
  • 125
    • 79959647710 scopus 로고    scopus 로고
    • Toward the resolution of an explosive radiation-A multilocus phylogeny of oceanic dolphins (Delphinidae)
    • McGowen MR. 2011. Toward the resolution of an explosive radiation-a multilocus phylogeny of oceanic dolphins (Delphinidae). Mol Phylogenet Evol. 60:345-357.
    • (2011) Mol Phylogenet Evol , vol.60 , pp. 345-357
    • McGowen, M.R.1
  • 126
    • 56549101000 scopus 로고    scopus 로고
    • The vestigial olfactory receptor subgenome of odontocete whales: Phylogenetic congruence between gene-tree reconciliation and supermatrix methods
    • McGowen MR, Clark C, Gatesy J. 2008. The vestigial olfactory receptor subgenome of odontocete whales: phylogenetic congruence between gene-tree reconciliation and supermatrix methods. Syst Biol. 57:574-590.
    • (2008) Syst Biol , vol.57 , pp. 574-590
    • McGowen, M.R.1    Clark, C.2    Gatesy, J.3
  • 127
    • 84901006925 scopus 로고    scopus 로고
    • Molecular evolution tracks macroevolutionary transitions in Cetacea
    • McGowen MR, Gatesy J, Wildman DE. 2014. Molecular evolution tracks macroevolutionary transitions in Cetacea. Trends Ecol Evol. 29:336-346.
    • (2014) Trends Ecol Evol , vol.29 , pp. 336-346
    • McGowen, M.R.1    Gatesy, J.2    Wildman, D.E.3
  • 128
    • 84864959956 scopus 로고    scopus 로고
    • Dolphin genome provides evidence for adaptive evolution of nervous system genes and a molecular rate slowdown
    • McGowen MR, Grossman LI, Wildman DE. 2012. Dolphin genome provides evidence for adaptive evolution of nervous system genes and a molecular rate slowdown. Proc R Soc Lond B Biol Sci. 279:3643-3651.
    • (2012) Proc R Soc Lond B Biol Sci , vol.279 , pp. 3643-3651
    • McGowen, M.R.1    Grossman, L.I.2    Wildman, D.E.3
  • 129
    • 70349665848 scopus 로고    scopus 로고
    • Divergence date estimation and a comprehensive molecular tree of extant cetaceans
    • McGowen MR, Spaulding M, Gatesy J. 2009. Divergence date estimation and a comprehensive molecular tree of extant cetaceans. Mol Phylogenet Evol. 53:891-906.
    • (2009) Mol Phylogenet Evol , vol.53 , pp. 891-906
    • McGowen, M.R.1    Spaulding, M.2    Gatesy, J.3
  • 131
    • 84929179009 scopus 로고    scopus 로고
    • How do SNP ascertainment schemes and population demographics affect inferences about population history?
    • McTavish EJ, Hillis DM. 2015. How do SNP ascertainment schemes and population demographics affect inferences about population history? BMC Genomics. 16:266.
    • (2015) BMC Genomics , vol.16 , pp. 266
    • McTavish, E.J.1    Hillis, D.M.2
  • 134
    • 33846874137 scopus 로고    scopus 로고
    • Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
    • Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA. 2007. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Res. 17:240-248.
    • (2007) Genome Res , vol.17 , pp. 240-248
    • Miller, M.R.1    Dunham, J.P.2    Amores, A.3    Cresko, W.A.4    Johnson, E.A.5
  • 138
    • 1642271573 scopus 로고    scopus 로고
    • SNPs in ecology, evolution and conservation
    • SNP Workshop Group
    • Morin PA, Luikart G, Wayne RK, SNP Workshop Group. 2004. SNPs in ecology, evolution and conservation. Trends Ecol Evol. 19:208-216.
    • (2004) Trends Ecol Evol , vol.19 , pp. 208-216
    • Morin, P.A.1    Luikart, G.2    Wayne, R.K.3
  • 139
    • 72749113546 scopus 로고    scopus 로고
    • Applied conservation genetics and the need for quality control and reporting of genetic data used in fisheries and wildlife management
    • Morin PA, Martien KK, Archer FI, Cipriano F, Steel D, Jackson J, Taylor BL. 2010b. Applied conservation genetics and the need for quality control and reporting of genetic data used in fisheries and wildlife management. J Hered. 101:1-10.
    • (2010) J Hered , vol.101 , pp. 1-10
    • Morin, P.A.1    Martien, K.K.2    Archer, F.I.3    Cipriano, F.4    Steel, D.5    Jackson, J.6    Taylor, B.L.7
  • 146
    • 79951750950 scopus 로고    scopus 로고
    • Comparison of FST outlier tests for SNP loci under selection
    • Narum SR, Hess JE. 2011. Comparison of FST outlier tests for SNP loci under selection. Mol Ecol Resour. 11:184-194.
    • (2011) Mol Ecol Resour , vol.11 , pp. 184-194
    • Narum, S.R.1    Hess, J.E.2
  • 149
    • 79956314887 scopus 로고    scopus 로고
    • Genotype and SNP calling from next-generation sequencing data
    • Nielsen R, Paul JS, Anders A, Song YS. 2011. Genotype and SNP calling from next-generation sequencing data. Nat Rev Genet. 12:433-451.
    • (2011) Nat Rev Genet , vol.12 , pp. 433-451
    • Nielsen, R.1    Paul, J.S.2    Anders, A.3    Song, Y.S.4
  • 152
    • 84921869954 scopus 로고    scopus 로고
    • Accounting for uncertainty in DNA sequencing data
    • O'Rawe JA, Ferson S, Lyon GJ. 2015. Accounting for uncertainty in DNA sequencing data. Trends Genet. 31:61-66.
    • (2015) Trends Genet , vol.31 , pp. 61-66
    • O'Rawe, J.A.1    Ferson, S.2    Lyon, G.J.3
  • 153
    • 79751495509 scopus 로고    scopus 로고
    • A simple route to single-nucleotide polymorphisms in a nonmodel species: Identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida)
    • Olsen MT, Volny VH, Bérubé M, Dietz R, Lydersen C, Kovacs KM, Dodd RS, Palsbøll PJ. 2011. A simple route to single-nucleotide polymorphisms in a nonmodel species: identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida). Mol Ecol Resour. 11(Suppl 1):9-19.
    • (2011) Mol Ecol Resour , vol.11 , pp. 9-19
    • Olsen, M.T.1    Volny, V.H.2    Bérubé, M.3    Dietz, R.4    Lydersen, C.5    Kovacs, K.M.6    Dodd, R.S.7    Palsbøll, P.J.8
  • 159
    • 84861691274 scopus 로고    scopus 로고
    • Double digest RADseq: An inexpensive method for de novo SNP discovery and genotyping in model and non-model species
    • Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE. 2012. Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS One. 7:e37135.
    • (2012) PLoS One , vol.7 , pp. e37135
    • Peterson, B.K.1    Weber, J.N.2    Kay, E.H.3    Fisher, H.S.4    Hoekstra, H.E.5
  • 160
    • 84911939982 scopus 로고    scopus 로고
    • On the prospect of identifying adaptive loci in recently bottlenecked populations
    • Poh YP, Domingues VS, Hoekstra HE, Jensen JD. 2014. On the prospect of identifying adaptive loci in recently bottlenecked populations. PLoS One. 9:e110579.
    • (2014) PLoS One , vol.9 , pp. e110579
    • Poh, Y.P.1    Domingues, V.S.2    Hoekstra, H.E.3    Jensen, J.D.4
  • 161
    • 84857520461 scopus 로고    scopus 로고
    • Development of highdensity genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
    • Poland JA, Brown PJ, Sorrells ME, Jannink JL. 2012. Development of highdensity genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One. 7:e32253.
    • (2012) PLoS One , vol.7 , pp. e32253
    • Poland, J.A.1    Brown, P.J.2    Sorrells, M.E.3    Jannink, J.L.4
  • 163
    • 84903825628 scopus 로고    scopus 로고
    • DDocent: A RADseq, variant-calling pipeline designed for population genomics of non-model organisms
    • Puritz JB, Hollenbeck CM, Gold JR. 2014. dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms. PeerJ. 2:e431.
    • (2014) PeerJ , vol.2 , pp. e431
    • Puritz, J.B.1    Hollenbeck, C.M.2    Gold, J.R.3
  • 165
    • 84859345902 scopus 로고    scopus 로고
    • Cultural traditions and the evolution of reprodutive isolation: Ecological speciation in killer whales?
    • Riesch R, Barrett-Lennard LG, Ellis GM, Ford JKB, Deecke VB. 2012. Cultural traditions and the evolution of reprodutive isolation: ecological speciation in killer whales? Biol J Linn Soc Lond. 2012:1-17.
    • (2012) Biol J Linn Soc Lond , vol.2012 , pp. 1-17
    • Riesch, R.1    Barrett-Lennard, L.G.2    Ellis, G.M.3    Ford, J.K.B.4    Deecke, V.B.5
  • 167
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. 2010. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 26:139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 168
    • 84921767617 scopus 로고    scopus 로고
    • De novo assembly and characterization of narrow-ridged finless porpoise renal transcriptome and identification of candidate genes involved in osmoregulation
    • Ruan R, Guo AH, Hao YJ, Zheng JS, Wang D. 2015. De novo assembly and characterization of narrow-ridged finless porpoise renal transcriptome and identification of candidate genes involved in osmoregulation. Int J Mol Sci. 16:2220-2238.
    • (2015) Int J Mol Sci , vol.16 , pp. 2220-2238
    • Ruan, R.1    Guo, A.H.2    Hao, Y.J.3    Zheng, J.S.4    Wang, D.5
  • 169
    • 84872859060 scopus 로고    scopus 로고
    • Long-term population size of the North Atlantic humpback whale within the context of worldwide population structure
    • Ruegg K, Rosenbaum HC, Anderson EC, Engel M, Rothschild A, Baker CS, Palumbi SR. 2013. Long-term population size of the North Atlantic humpback whale within the context of worldwide population structure. Cons Gen. 14:103-114.
    • (2013) Cons Gen , vol.14 , pp. 103-114
    • Ruegg, K.1    Rosenbaum, H.C.2    Anderson, E.C.3    Engel, M.4    Rothschild, A.5    Baker, C.S.6    Palumbi, S.R.7
  • 170
    • 84905572361 scopus 로고    scopus 로고
    • Inferring human population size and separation history from multiple genome sequences
    • Schiffels S, Durbin R. 2014. Inferring human population size and separation history from multiple genome sequences. Nat Genet. 46:919-925.
    • (2014) Nat Genet , vol.46 , pp. 919-925
    • Schiffels, S.1    Durbin, R.2
  • 171
    • 84958153152 scopus 로고    scopus 로고
    • AdapterRemoval v2: Rapid adapter trimming, identification, and read merging
    • Schubert M, Lindgreen S, Orlando L. 2016. AdapterRemoval v2: rapid adapter trimming, identification, and read merging. BMC Res Notes. 9:88.
    • (2016) BMC Res Notes , vol.9 , pp. 88
    • Schubert, M.1    Lindgreen, S.2    Orlando, L.3
  • 174
    • 78149462776 scopus 로고    scopus 로고
    • Of glaciers and refugia: A decade of study sheds new light on the phylogeographic patterns of northwestern North America
    • Shafer ABA, Cullingham CI, Côté SD, Coltman DW. 2010. Of glaciers and refugia: a decade of study sheds new light on the phylogeographic patterns of northwestern North America. Mol Ecol. 19:4589-4621.
    • (2010) Mol Ecol , vol.19 , pp. 4589-4621
    • Shafer, A.B.A.1    Cullingham, C.I.2    Côté, S.D.3    Coltman, D.W.4
  • 176
    • 84920971111 scopus 로고    scopus 로고
    • Demographic inferences using short-read genomic data in an approximate Bayesian computation framework: In silico evaluation of power, biases and proof of concept in Atlantic walrus
    • Shafer AB, Gattepaille LM, Stewart RE, Wolf JB. 2015. Demographic inferences using short-read genomic data in an approximate Bayesian computation framework: in silico evaluation of power, biases and proof of concept in Atlantic walrus. Mol Ecol. 24:328-345.
    • (2015) Mol Ecol , vol.24 , pp. 328-345
    • Shafer, A.B.1    Gattepaille, L.M.2    Stewart, R.E.3    Wolf, J.B.4
  • 177
    • 84892817596 scopus 로고    scopus 로고
    • Genome-wide scan for bats and dolphin to detect their genetic basis for new locomotive styles
    • Shen YY, Zhou WP, Zhou TC, Zeng YN, Li GM, Irwin DM, Zhang YP. 2012. Genome-wide scan for bats and dolphin to detect their genetic basis for new locomotive styles. PLoS One. 7:e46455.
    • (2012) PLoS One , vol.7 , pp. e46455
    • Shen, Y.Y.1    Zhou, W.P.2    Zhou, T.C.3    Zeng, Y.N.4    Li, G.M.5    Irwin, D.M.6    Zhang, Y.P.7
  • 179
    • 84938984494 scopus 로고    scopus 로고
    • AftrRAD: A pipeline for accurate and efficient de novo assembly of RADseq data
    • Sovic MG, Fries AC, Gibbs HL. 2015. AftrRAD: a pipeline for accurate and efficient de novo assembly of RADseq data. Mol Ecol Resour. 15:1163-1171.
    • (2015) Mol Ecol Resour , vol.15 , pp. 1163-1171
    • Sovic, M.G.1    Fries, A.C.2    Gibbs, H.L.3
  • 180
    • 84948757285 scopus 로고    scopus 로고
    • Dynamics in transcriptomics: Advancements in RNA-seq time course and downstream analysis
    • Spies D, Ciaudo C. 2015. Dynamics in transcriptomics: advancements in RNA-seq time course and downstream analysis. Comput Struct Biotechnol J. 13:469-477.
    • (2015) Comput Struct Biotechnol J , vol.13 , pp. 469-477
    • Spies, D.1    Ciaudo, C.2
  • 183
    • 84919682778 scopus 로고    scopus 로고
    • Species identification and likely catch time preiod of whale bones from South Georgia
    • Sremba AL, Martin AR, Baker CS. 2015. Species identification and likely catch time preiod of whale bones from South Georgia. Mar Mamm Sci. 31:122-132.
    • (2015) Mar Mamm Sci , vol.31 , pp. 122-132
    • Sremba, A.L.1    Martin, A.R.2    Baker, C.S.3
  • 185
    • 77954526823 scopus 로고    scopus 로고
    • The case for cloud computing in genome informatics
    • Stein LD. 2010. The case for cloud computing in genome informatics. Genome Biol. 11:207.
    • (2010) Genome Biol , vol.11 , pp. 207
    • Stein, L.D.1
  • 186
    • 38549103015 scopus 로고    scopus 로고
    • Combining population genomics and quantitative genetics: Finding genes underlying ecologically important traits
    • Stinchcombe JR, Hoekstra HE. 2008. Combining population genomics and quantitative genetics: finding genes underlying ecologically important traits. Heredity. 100:158-170.
    • (2008) Heredity , vol.100 , pp. 158-170
    • Stinchcombe, J.R.1    Hoekstra, H.E.2
  • 187
    • 33745777374 scopus 로고    scopus 로고
    • PCB-related alteration of thyroid hormones and thyroid hormone receptor gene expression in free-ranging harbor seals (Phoca vitulina)
    • Tabuchi M, Veldhoen N, Dangerfield N, Jeffries S, Helbing CC, Ross PS. 2006. PCB-related alteration of thyroid hormones and thyroid hormone receptor gene expression in free-ranging harbor seals (Phoca vitulina). Environ Health Perspect. 114:1024-1031.
    • (2006) Environ Health Perspect , vol.114 , pp. 1024-1031
    • Tabuchi, M.1    Veldhoen, N.2    Dangerfield, N.3    Jeffries, S.4    Helbing, C.C.5    Ross, P.S.6
  • 188
    • 84958103693 scopus 로고    scopus 로고
    • Emerging technologies to conserve biodiversity: Further opportunities via genomics
    • Taylor HR, Gemmell NJ. 2016. Emerging technologies to conserve biodiversity: further opportunities via genomics. Response to Pimm et al. Trends Ecol Evol. 31:171-172.
    • (2016) Response to Pimm et Al. Trends Ecol Evol , vol.31 , pp. 171-172
    • Taylor, H.R.1    Gemmell, N.J.2
  • 189
    • 84863496231 scopus 로고    scopus 로고
    • Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
    • The Heliconius Genome Consortium
    • The Heliconius Genome Consortium. 2012. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature. 487:94-98.
    • (2012) Nature , vol.487 , pp. 94-98
  • 194
    • 84937034326 scopus 로고    scopus 로고
    • Fast imputation using medium or low-coverage sequence data
    • VanRaden PM, Sun C, O'Connell JR. 2015. Fast imputation using medium or low-coverage sequence data. BMC Genet. 16:82.
    • (2015) BMC Genet , vol.16 , pp. 82
    • VanRaden, P.M.1    Sun, C.2    O'Connell, J.R.3
  • 196
    • 84898448634 scopus 로고    scopus 로고
    • Applicability of RAD-tag genotyping for interfamilial comparisons: Empirical data from two cetaceans
    • Viricel A, Pante E, Dabin W, Simon-Bouhet B. 2014. Applicability of RAD-tag genotyping for interfamilial comparisons: empirical data from two cetaceans. Mol Ecol Resour. 14:597-605.
    • (2014) Mol Ecol Resour , vol.14 , pp. 597-605
    • Viricel, A.1    Pante, E.2    Dabin, W.3    Simon-Bouhet, B.4
  • 197
    • 84907898008 scopus 로고    scopus 로고
    • Hierarchical population structure and habitat differences in a highly mobile marine species: The Atlantic spotted dolphin
    • Viricel A, Rosel PE. 2014. Hierarchical population structure and habitat differences in a highly mobile marine species: the Atlantic spotted dolphin. Mol Ecol. 23:5018-5035.
    • (2014) Mol Ecol , vol.23 , pp. 5018-5035
    • Viricel, A.1    Rosel, P.E.2
  • 198
    • 84879330562 scopus 로고    scopus 로고
    • Principles of transcriptome analysis and gene expression quantification: An RNA-seq tutorial
    • Wolf JB. 2013. Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial. Mol Ecol Resour. 13:559-572.
    • (2013) Mol Ecol Resour , vol.13 , pp. 559-572
    • Wolf, J.B.1
  • 199
    • 62449092560 scopus 로고    scopus 로고
    • Seven new dolphin mitochondrial genomes and a time-calibrated phylogeny of whales
    • Xiong Y, Brandley MC, Xu S, Zhou K, Yang G. 2009. Seven new dolphin mitochondrial genomes and a time-calibrated phylogeny of whales. BMC Evol Biol. 9:20.
    • (2009) BMC Evol Biol , vol.9 , pp. 20
    • Xiong, Y.1    Brandley, M.C.2    Xu, S.3    Zhou, K.4    Yang, G.5
  • 200
    • 84859898660 scopus 로고    scopus 로고
    • A beginner's guide to eukaryotic genome annotation
    • Yandell M, Ence D. 2012. A beginner's guide to eukaryotic genome annotation. Nat Rev Genet. 13:329-342.
    • (2012) Nat Rev Genet , vol.13 , pp. 329-342
    • Yandell, M.1    Ence, D.2
  • 201
    • 0035002015 scopus 로고    scopus 로고
    • Computational inference of homologous gene structures in the human genome
    • Yeh RF, Lim LP, Burge CB. 2001. Computational inference of homologous gene structures in the human genome. Genome Res. 11:803-816.
    • (2001) Genome Res , vol.11 , pp. 803-816
    • Yeh, R.F.1    Lim, L.P.2    Burge, C.B.3
  • 203
    • 84860485003 scopus 로고    scopus 로고
    • Optimizing de novo transcriptome assembly from short-read RNA-Seq data: A comparative study
    • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12:S2.
    • (2011) BMC Bioinformatics , vol.12 , pp. S2
    • Zhao, Q.-Y.1    Wang, Y.2    Kong, Y.-M.3    Luo, D.4    Li, X.5    Hao, P.6
  • 204
    • 84889244482 scopus 로고    scopus 로고
    • Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations
    • Zhou X, Sun F, Xu S, Fan G, Zhu K, Liu X, Chen Y, Shi C, Yang Y, Huang Z, et al. 2013. Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations. Nat Commun. 4:2708.
    • (2013) Nat Commun , vol.4 , pp. 2708
    • Zhou, X.1    Sun, F.2    Xu, S.3    Fan, G.4    Zhu, K.5    Liu, X.6    Chen, Y.7    Shi, C.8    Yang, Y.9    Huang, Z.10
  • 205
    • 84929626960 scopus 로고    scopus 로고
    • No genome-wide protein sequence convergence for echolocation
    • Zou Z, Zhang J. 2015. No genome-wide protein sequence convergence for echolocation. Mol Biol Evol. 32:1237-1241.
    • (2015) Mol Biol Evol , vol.32 , pp. 1237-1241
    • Zou, Z.1    Zhang, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.