메뉴 건너뛰기




Volumn 31, Issue 5, 2015, Pages 720-727

Fast and accurate site frequency spectrum estimation from low coverage sequence data

Author keywords

[No Author keywords available]

Indexed keywords

SANDFLY FEVER SICILIAN VIRUS;

EID: 84928981524     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu725     Document Type: Article
Times cited : (10)

References (23)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 2
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • 1000 Genomes Project Consortium (2012) An integrated map of genetic variation from 1, 092 human genomes. Nature, 491, 56-65.
    • (2012) Nature , vol.491 , pp. 56-65
  • 3
    • 52049112962 scopus 로고    scopus 로고
    • Testing for neutrality in samples with sequencing errors
    • Achaz, G. (2008) Testing for neutrality in samples with sequencing errors. Genetics, 179, 1409-1424.
    • (2008) Genetics , vol.179 , pp. 1409-1424
    • Achaz, G.1
  • 4
    • 70350176199 scopus 로고    scopus 로고
    • Frequency spectrum neutrality tests: One for all and all for one
    • Achaz, G. (2009) Frequency spectrum neutrality tests: one for all and all for one. Genetics, 183, 249-258.
    • (2009) Genetics , vol.183 , pp. 249-258
    • Achaz, G.1
  • 5
    • 38849194141 scopus 로고    scopus 로고
    • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    • Andolfatto, P. (2007) Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome. Genome Res., 17, 1755-1762.
    • (2007) Genome Res. , vol.17 , pp. 1755-1762
    • Andolfatto, P.1
  • 6
    • 35948940895 scopus 로고    scopus 로고
    • Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
    • Begun, D.J. et al. (2007) Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol., 5, e310.
    • (2007) PLoS Biol. , vol.5 , pp. e310
    • Begun, D.J.1
  • 7
    • 79960405019 scopus 로고    scopus 로고
    • The variant call format and VCFtools
    • Danecek, P. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156-2158.
    • (2011) Bioinformatics , vol.27 , pp. 2156-2158
    • Danecek, P.1
  • 8
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyp-ing using next-generation DNA sequencing data
    • DePristo, M.A. et al. (2011) A framework for variation discovery and genotyp-ing using next-generation DNA sequencing data. Nat. Genet., 43, 491-498.
    • (2011) Nat. Genet. , vol.43 , pp. 491-498
    • Depristo, M.A.1
  • 9
    • 84887312794 scopus 로고    scopus 로고
    • Robust demographic inference from genomic and SNP data
    • Excoffier, L. et al. (2013). Robust demographic inference from genomic and SNP data. PLoS Genet., 9, e1003905.
    • (2013) PLoS Genet. , vol.9 , pp. e1003905
    • Excoffier, L.1
  • 10
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay, J.C. and Wu, C.I. (2000) Hitchhiking under positive Darwinian selection. Genetics, 155, 1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 11
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu, Y.X. and Li, W.H. (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 12
    • 84872143942 scopus 로고    scopus 로고
    • Analysis of 6, 515 exomes reveals the recent origin of most human protein-coding variants
    • Fu, W. et al. (2013) Analysis of 6, 515 exomes reveals the recent origin of most human protein-coding variants. Nature, 493, 216-220.
    • (2013) Nature , vol.493 , pp. 216-220
    • Fu, W.1
  • 13
    • 73449149044 scopus 로고    scopus 로고
    • Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
    • Gutenkunst, R.N. et al. (2009) Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet., 5, e1000695.
    • (2009) PLoS Genet. , vol.5 , pp. e1000695
    • Gutenkunst, R.N.1
  • 14
    • 84895760521 scopus 로고    scopus 로고
    • Characterizing bias in population genetic inferences from low-coverage sequencing data
    • Han, E. et al. (2014) Characterizing bias in population genetic inferences from low-coverage sequencing data. Mol. Biol. Evol., 31, 723-735.
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 723-735
    • Han, E.1
  • 15
    • 77954198372 scopus 로고    scopus 로고
    • Design of association studies with pooled or un-pooled next-generation sequencing data
    • Kim, S.Y. et al. (2010) Design of association studies with pooled or un-pooled next-generation sequencing data. Genet. Epidemiol., 34, 479-491.
    • (2010) Genet. Epidemiol. , vol.34 , pp. 479-491
    • Kim, S.Y.1
  • 16
    • 80054915847 scopus 로고    scopus 로고
    • A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
    • Li, H. (2011) A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics, 27, 2987-2993.
    • (2011) Bioinformatics , vol.27 , pp. 2987-2993
    • Li, H.1
  • 17
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H. et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 18
    • 84863541347 scopus 로고    scopus 로고
    • An abundance of rare functional variants in 202 drug target genes sequenced in 14, 002 people
    • Nelson, M.R. et al. (2012) An abundance of rare functional variants in 202 drug target genes sequenced in 14, 002 people. Science, 337, 100-104.
    • (2012) Science , vol.337 , pp. 100-104
    • Nelson, M.R.1
  • 19
    • 84864273210 scopus 로고    scopus 로고
    • SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data
    • Nielsen, R. et al. (2012) SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data. PLoS ONE, 7, e37558.
    • (2012) PLoS ONE , vol.7 , pp. e37558
    • Nielsen, R.1
  • 20
    • 84861598099 scopus 로고    scopus 로고
    • Extremely low-coverage sequencing and imputation increases power for genome-wide association studies
    • Pasaniuc, B. et al. (2012) Extremely low-coverage sequencing and imputation increases power for genome-wide association studies. Nat. Genet., 44, 631-635.
    • (2012) Nat. Genet. , vol.44 , pp. 631-635
    • Pasaniuc, B.1
  • 22
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 23
    • 77954319020 scopus 로고    scopus 로고
    • Sequencing of 50 human exomes reveals adaptation to high altitude
    • Yi, X. et al. (2010) Sequencing of 50 human exomes reveals adaptation to high altitude. Science, 329, 75-78.
    • (2010) Science , vol.329 , pp. 75-78
    • Yi, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.