-
1
-
-
84862018035
-
Reference genome sequence of the model plant Setaria
-
Bennetzen J.L., et al. Reference genome sequence of the model plant Setaria. Nat. Biotechnol. 2012, 30:555-561.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 555-561
-
-
Bennetzen, J.L.1
-
2
-
-
84870260198
-
Analysis of the bread wheat genome using whole-genome shotgun sequencing
-
Brenchley R., et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 2012, 491:705-710.
-
(2012)
Nature
, vol.491
, pp. 705-710
-
-
Brenchley, R.1
-
3
-
-
84863496231
-
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
-
Heliconius Genome Sequencing Consortium
-
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature 2012, 487:94-98. Heliconius Genome Sequencing Consortium.
-
(2012)
Nature
, vol.487
, pp. 94-98
-
-
-
4
-
-
84863693752
-
The tomato genome sequence provides insights into fleshy fruit evolution
-
Tomato Genome Consortium
-
The tomato genome sequence provides insights into fleshy fruit evolution. Nature 2012, 485:635-641. Tomato Genome Consortium.
-
(2012)
Nature
, vol.485
, pp. 635-641
-
-
-
5
-
-
84870297139
-
The genomic landscape of species divergence in Ficedula flycatchers
-
Ellegren H., et al. The genomic landscape of species divergence in Ficedula flycatchers. Nature 2012, 491:756-760.
-
(2012)
Nature
, vol.491
, pp. 756-760
-
-
Ellegren, H.1
-
6
-
-
84871941712
-
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
-
Guo S., et al. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nat. Genet. 2013, 45:51-58.
-
(2013)
Nat. Genet.
, vol.45
, pp. 51-58
-
-
Guo, S.1
-
7
-
-
84859462157
-
The genomic basis of adaptive evolution in threespine sticklebacks
-
Jones F.C., et al. The genomic basis of adaptive evolution in threespine sticklebacks. Nature 2012, 484:55-61.
-
(2012)
Nature
, vol.484
, pp. 55-61
-
-
Jones, F.C.1
-
8
-
-
84862980012
-
The bonobo genome compared with the chimpanzee and human genomes
-
Prufer K., et al. The bonobo genome compared with the chimpanzee and human genomes. Nature 2012, 486:527-531.
-
(2012)
Nature
, vol.486
, pp. 527-531
-
-
Prufer, K.1
-
9
-
-
84864398778
-
The yak genome and adaptation to life at high altitude
-
Qiu Q., et al. The yak genome and adaptation to life at high altitude. Nat. Genet. 2012, 44:946-949.
-
(2012)
Nat. Genet.
, vol.44
, pp. 946-949
-
-
Qiu, Q.1
-
10
-
-
84872893458
-
Insights into bilaterian evolution from three spiralian genomes
-
Simakov O., et al. Insights into bilaterian evolution from three spiralian genomes. Nature 2013, 493:526-531.
-
(2013)
Nature
, vol.493
, pp. 526-531
-
-
Simakov, O.1
-
11
-
-
84873087245
-
A heterozygous moth genome provides insights into herbivory and detoxification
-
You M., et al. A heterozygous moth genome provides insights into herbivory and detoxification. Nat. Genet. 2013, 45:220-225.
-
(2013)
Nat. Genet.
, vol.45
, pp. 220-225
-
-
You, M.1
-
12
-
-
84872783004
-
Comparative analysis of bat genomes provides insight into the evolution of flight and immunity
-
Zhang G., et al. Comparative analysis of bat genomes provides insight into the evolution of flight and immunity. Science 2013, 339:456-460.
-
(2013)
Science
, vol.339
, pp. 456-460
-
-
Zhang, G.1
-
13
-
-
84867088834
-
The oyster genome reveals stress adaptation and complexity of shell formation
-
Zhang G., et al. The oyster genome reveals stress adaptation and complexity of shell formation. Nature 2012, 490:49-54.
-
(2012)
Nature
, vol.490
, pp. 49-54
-
-
Zhang, G.1
-
14
-
-
84874376138
-
Genomic diversity and evolution of the head crest in the rock pigeon
-
Shapiro M.D., et al. Genomic diversity and evolution of the head crest in the rock pigeon. Science 2013, 339:1063-1067.
-
(2013)
Science
, vol.339
, pp. 1063-1067
-
-
Shapiro, M.D.1
-
15
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
Hu T.T., et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat. Genet. 2011, 43:476-481.
-
(2011)
Nat. Genet.
, vol.43
, pp. 476-481
-
-
Hu, T.T.1
-
16
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
ICGSC
-
ICGSC Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
17
-
-
77950376512
-
The genome of a songbird
-
Warren W.C., et al. The genome of a songbird. Nature 2010, 464:757-762.
-
(2010)
Nature
, vol.464
, pp. 757-762
-
-
Warren, W.C.1
-
18
-
-
77957903598
-
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
-
Dalloul R.A., et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol. 2010, 8:e1000475.
-
(2010)
PLoS Biol.
, vol.8
-
-
Dalloul, R.A.1
-
19
-
-
84873700991
-
Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence
-
Rands C., et al. Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. BMC Genomics 2013, 14:95.
-
(2013)
BMC Genomics
, vol.14
, pp. 95
-
-
Rands, C.1
-
20
-
-
84874022289
-
The genome of Darwin's finch (Geospiza fortis)
-
Zhang G., et al. The genome of Darwin's finch (Geospiza fortis). GigaDB 2012, 10.5524/100040.
-
(2012)
GigaDB
-
-
Zhang, G.1
-
21
-
-
84875317948
-
The genome sequence of the ground tit Pseudopodoces humilis provides insights into its adaptation to high altitude
-
Cai Q., et al. The genome sequence of the ground tit Pseudopodoces humilis provides insights into its adaptation to high altitude. Genome Biol. 2013, 14:R29.
-
(2013)
Genome Biol.
, vol.14
-
-
Cai, Q.1
-
22
-
-
84877256024
-
A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education
-
Oleksyk T., et al. A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education. Gigascience 2012, 1:14.
-
(2012)
Gigascience
, vol.1
, pp. 14
-
-
Oleksyk, T.1
-
23
-
-
84878588665
-
Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle
-
Zhan X., et al. Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle. Nat. Genet. 2013, 45:563-566.
-
(2013)
Nat. Genet.
, vol.45
, pp. 563-566
-
-
Zhan, X.1
-
24
-
-
84863651532
-
Hybrid error correction and de novo assembly of single-molecule sequencing reads
-
Koren S., et al. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol. 2012, 30:693-700.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 693-700
-
-
Koren, S.1
-
25
-
-
84868704770
-
A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content
-
Tortereau F., et al. A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content. BMC Genomics 2012, 13:586.
-
(2012)
BMC Genomics
, vol.13
, pp. 586
-
-
Tortereau, F.1
-
26
-
-
81355138824
-
Recombination rate variation in closely related species
-
Smukowski C.S., Noor M.A.F. Recombination rate variation in closely related species. Heredity 2011, 107:496-508.
-
(2011)
Heredity
, vol.107
, pp. 496-508
-
-
Smukowski, C.S.1
Noor, M.A.F.2
-
27
-
-
70350236484
-
Biased gene conversion and the evolution of mammalian genomic landscapes
-
Duret L., Galtier N. Biased gene conversion and the evolution of mammalian genomic landscapes. Annu. Rev. Genomics Hum. Genet. 2009, 10:285-311.
-
(2009)
Annu. Rev. Genomics Hum. Genet.
, vol.10
, pp. 285-311
-
-
Duret, L.1
Galtier, N.2
-
28
-
-
84873587736
-
Phylogenetic patterns of GC-biased gene conversion in placental mammals and the evolutionary dynamics of recombination landscapes
-
Lartillot N. Phylogenetic patterns of GC-biased gene conversion in placental mammals and the evolutionary dynamics of recombination landscapes. Mol. Biol. Evol. 2013, 30:489-502.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 489-502
-
-
Lartillot, N.1
-
29
-
-
77955136814
-
Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes
-
Romiguier J., et al. Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res. 2010, 20:1001-1009.
-
(2010)
Genome Res.
, vol.20
, pp. 1001-1009
-
-
Romiguier, J.1
-
30
-
-
77950630372
-
Evolutionary stasis: the stable chromosomes of birds
-
Ellegren H. Evolutionary stasis: the stable chromosomes of birds. Trends Ecol. Evol. 2010, 25:283-291.
-
(2010)
Trends Ecol. Evol.
, vol.25
, pp. 283-291
-
-
Ellegren, H.1
-
31
-
-
84879362203
-
Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype
-
Mugal C.F., et al. Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype. Mol. Biol. Evol. 2013, 30:1700-1712.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1700-1712
-
-
Mugal, C.F.1
-
32
-
-
84857441787
-
Direct and indirect consequences of meiotic recombination: implications for genome evolution
-
Webster M.T., Hurst L.D. Direct and indirect consequences of meiotic recombination: implications for genome evolution. Trends Genet. 2012, 28:101-109.
-
(2012)
Trends Genet.
, vol.28
, pp. 101-109
-
-
Webster, M.T.1
Hurst, L.D.2
-
33
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Dunham I., et al. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489:57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
-
34
-
-
84875275808
-
On the immortality of television sets: "Function" in the human genome according to the evolution-free gospel of ENCODE
-
Graur D., et al. On the immortality of television sets: "Function" in the human genome according to the evolution-free gospel of ENCODE. Genome Biol. Evol. 2013, 5:578-590.
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 578-590
-
-
Graur, D.1
-
35
-
-
0034883255
-
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
-
Bergman C.M., Kreitman M. Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Genome Res. 2001, 11:1335-1345.
-
(2001)
Genome Res.
, vol.11
, pp. 1335-1345
-
-
Bergman, C.M.1
Kreitman, M.2
-
36
-
-
84879336775
-
Conservation and functional element discovery in 20 angiosperm plant genomes
-
Hupalo D., Kern A.D. Conservation and functional element discovery in 20 angiosperm plant genomes. Mol. Biol. Evol. 2013, 30:1729-1744.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1729-1744
-
-
Hupalo, D.1
Kern, A.D.2
-
38
-
-
27844543705
-
Human SNPs reveal no evidence of frequent positive selection
-
Zhang L., Li W-H. Human SNPs reveal no evidence of frequent positive selection. Mol. Biol. Evol. 2005, 22:2504-2507.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 2504-2507
-
-
Zhang, L.1
Li, W.-H.2
-
39
-
-
77954969511
-
Genome wide analyses reveal little evidence for adaptive evolution in many plant species
-
Gossmann T.I., et al. Genome wide analyses reveal little evidence for adaptive evolution in many plant species. Mol. Biol. Evol. 2010, 27:1822-1832.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1822-1832
-
-
Gossmann, T.I.1
-
40
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
Smith N.G.C., Eyre-Walker A. Adaptive protein evolution in Drosophila. Nature 2002, 415:1022-1024.
-
(2002)
Nature
, vol.415
, pp. 1022-1024
-
-
Smith, N.G.C.1
Eyre-Walker, A.2
-
41
-
-
84865426303
-
The effect of variation in the effective population size on the rate of adaptive molecular evolution in eukaryotes
-
Gossmann T.I., et al. The effect of variation in the effective population size on the rate of adaptive molecular evolution in eukaryotes. Genome Biol. Evol. 2012, 4:658-667.
-
(2012)
Genome Biol. Evol.
, vol.4
, pp. 658-667
-
-
Gossmann, T.I.1
-
42
-
-
84877789322
-
The rate of molecular adaptation in a changing environment
-
Lourenco J.o.M., et al. The rate of molecular adaptation in a changing environment. Mol. Biol. Evol. 2013, 30:1292-1301.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1292-1301
-
-
Lourenco, J.1
-
43
-
-
0035045933
-
Population genomics: genome-wide sampling of insect populations
-
Black W.C., et al. Population genomics: genome-wide sampling of insect populations. Ann. Rev. Entomol. 2001, 46:441-469.
-
(2001)
Ann. Rev. Entomol.
, vol.46
, pp. 441-469
-
-
Black, W.C.1
-
44
-
-
0345304399
-
The power and promise of population genomics: from genotyping to genome typing
-
Luikart G., et al. The power and promise of population genomics: from genotyping to genome typing. Nat. Rev. Genet. 2003, 4:981-994.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 981-994
-
-
Luikart, G.1
-
45
-
-
35948940895
-
Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans
-
Begun D.J., et al. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol. 2007, 5:e310.
-
(2007)
PLoS Biol.
, vol.5
-
-
Begun, D.J.1
-
46
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
Davey J.W., et al. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat. Rev. Genet. 2011, 12:499-510.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
-
47
-
-
84878427471
-
Genotyping-by-sequencing in ecological and conservation genomics
-
Narum S.R., et al. Genotyping-by-sequencing in ecological and conservation genomics. Mol. Ecol. 2013, 22:2841-2847.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 2841-2847
-
-
Narum, S.R.1
-
48
-
-
78049323331
-
Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants
-
Li Y., et al. Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nat. Genet. 2010, 42:969-972.
-
(2010)
Nat. Genet.
, vol.42
, pp. 969-972
-
-
Li, Y.1
-
49
-
-
84865154374
-
Genotype-phenotype mapping in a post-GWAS world
-
Nuzhdin S.V., et al. Genotype-phenotype mapping in a post-GWAS world. Trends Genet. 2012, 28:421-426.
-
(2012)
Trends Genet.
, vol.28
, pp. 421-426
-
-
Nuzhdin, S.V.1
-
50
-
-
79953788316
-
The n=1 constraint in population genomics
-
Buerkle C.A., et al. The n=1 constraint in population genomics. Mol. Ecol. 2011, 20:1575-1581.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 1575-1581
-
-
Buerkle, C.A.1
-
51
-
-
84864841125
-
Detecting selective sweeps from pooled next-generation sequencing samples
-
Boitard S., et al. Detecting selective sweeps from pooled next-generation sequencing samples. Mol. Biol. Evol. 2012, 29:2177-2186.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 2177-2186
-
-
Boitard, S.1
-
52
-
-
84859613736
-
Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach
-
Cheng C.D., et al. Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach. Genetics 2012, 190:1417-1432.
-
(2012)
Genetics
, vol.190
, pp. 1417-1432
-
-
Cheng, C.D.1
-
53
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo M.A., et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 2011, 43:491-498.
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
-
54
-
-
79957950801
-
SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
-
Le S.Q., Durbin R. SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples. Genome Res. 2011, 21:952-960.
-
(2011)
Genome Res.
, vol.21
, pp. 952-960
-
-
Le, S.Q.1
Durbin, R.2
-
55
-
-
84866742932
-
A beginners guide to SNP calling from high-throughput DNA-sequencing data
-
Altman A., et al. A beginners guide to SNP calling from high-throughput DNA-sequencing data. Hum. Genet. 2012, 131:1541-1554.
-
(2012)
Hum. Genet.
, vol.131
, pp. 1541-1554
-
-
Altman, A.1
-
56
-
-
79956314887
-
Genotype and SNP calling from next-generation sequencing data
-
Nielsen R., et al. Genotype and SNP calling from next-generation sequencing data. Nat. Rev. Genet. 2011, 12:443-451.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 443-451
-
-
Nielsen, R.1
-
57
-
-
84864273210
-
SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data
-
Nielsen R., et al. SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data. PLoS ONE 2012, 7:e37558.
-
(2012)
PLoS ONE
, vol.7
-
-
Nielsen, R.1
-
58
-
-
84877100867
-
An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data
-
Wang Y., et al. An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data. Genome Res. 2013, 23:833-842.
-
(2013)
Genome Res.
, vol.23
, pp. 833-842
-
-
Wang, Y.1
-
59
-
-
84871986062
-
Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation
-
Zhao S., et al. Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation. Nat. Genet. 2013, 45:67-71.
-
(2013)
Nat. Genet.
, vol.45
, pp. 67-71
-
-
Zhao, S.1
-
60
-
-
84875176954
-
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
-
Varshney R.K., et al. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat. Biotechnol. 2013, 31:240-246.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 240-246
-
-
Varshney, R.K.1
-
61
-
-
0036189674
-
A microsatellite-based multilocus screen for the identification of local selective sweeps
-
Schlötterer C. A microsatellite-based multilocus screen for the identification of local selective sweeps. Genetics 2002, 160:753-763.
-
(2002)
Genetics
, vol.160
, pp. 753-763
-
-
Schlötterer, C.1
-
62
-
-
84869003221
-
Analyses of pig genomes provide insight into porcine demography and evolution
-
Groenen M.A.M., et al. Analyses of pig genomes provide insight into porcine demography and evolution. Nature 2012, 491:393-398.
-
(2012)
Nature
, vol.491
, pp. 393-398
-
-
Groenen, M.A.M.1
-
63
-
-
84870330188
-
Strong signatures of selection in the domestic pig genome
-
Rubin C-J., et al. Strong signatures of selection in the domestic pig genome. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:19529-19536.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 19529-19536
-
-
Rubin, C.-J.1
-
64
-
-
84875301605
-
The genomic signature of dog domestication reveals adaptation to a starch-rich diet
-
Axelsson E., et al. The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature 2013, 495:360-364.
-
(2013)
Nature
, vol.495
, pp. 360-364
-
-
Axelsson, E.1
-
65
-
-
84861220058
-
Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle
-
Larkin D.M., et al. Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:7693-7698.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 7693-7698
-
-
Larkin, D.M.1
-
66
-
-
84862981255
-
Genome-wide genetic changes during modern breeding of maize
-
Jiao Y., et al. Genome-wide genetic changes during modern breeding of maize. Nat. Genet. 2012, 44:812-815.
-
(2012)
Nat. Genet.
, vol.44
, pp. 812-815
-
-
Jiao, Y.1
-
67
-
-
84862993359
-
Comparative population genomics of maize domestication and improvement
-
Hufford M.B., et al. Comparative population genomics of maize domestication and improvement. Nat. Genet. 2012, 44:808-811.
-
(2012)
Nat. Genet.
, vol.44
, pp. 808-811
-
-
Hufford, M.B.1
-
68
-
-
84867875610
-
A map of rice genome variation reveals the origin of cultivated rice
-
Huang X., et al. A map of rice genome variation reveals the origin of cultivated rice. Nature 2012, 490:497-501.
-
(2012)
Nature
, vol.490
, pp. 497-501
-
-
Huang, X.1
-
69
-
-
0036189827
-
Detecting a local signature of genetic hitchhiking along a recombining chromosome
-
Kim Y., Stephan W. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 2002, 160:765-777.
-
(2002)
Genetics
, vol.160
, pp. 765-777
-
-
Kim, Y.1
Stephan, W.2
-
70
-
-
27544437635
-
Genomic scans for selective sweeps using SNP data
-
Nielsen R., et al. Genomic scans for selective sweeps using SNP data. Genome Res. 2005, 15:1566-1575.
-
(2005)
Genome Res.
, vol.15
, pp. 1566-1575
-
-
Nielsen, R.1
-
71
-
-
84864397328
-
Exome sequencing of extreme phenotypes identifies DCTN4 as a modifier of chronic Pseudomonas aeruginosa infection in cystic fibrosis
-
Emond M.J., et al. Exome sequencing of extreme phenotypes identifies DCTN4 as a modifier of chronic Pseudomonas aeruginosa infection in cystic fibrosis. Nat. Genet. 2012, 44:886-889.
-
(2012)
Nat. Genet.
, vol.44
, pp. 886-889
-
-
Emond, M.J.1
-
72
-
-
84878019197
-
Understanding the origin of species with genome-scale data: modelling gene flow
-
Sousa V., Hey J. Understanding the origin of species with genome-scale data: modelling gene flow. Nat. Rev. Genet. 2013, 14:404-414.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 404-414
-
-
Sousa, V.1
Hey, J.2
-
73
-
-
73449149044
-
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
-
Gutenkunst R.N., et al. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet. 2009, 5:e1000695.
-
(2009)
PLoS Genet.
, vol.5
-
-
Gutenkunst, R.N.1
-
74
-
-
78149388939
-
Approximate Bayesian Computation in evolution and ecology
-
Beaumont M.A. Approximate Bayesian Computation in evolution and ecology. Annu. Rev. Ecol. Evol. Syst. 2010, 41:379-406.
-
(2010)
Annu. Rev. Ecol. Evol. Syst.
, vol.41
, pp. 379-406
-
-
Beaumont, M.A.1
-
75
-
-
79251553493
-
Comparative and demographic analysis of orang-utan genomes
-
Locke D.P., et al. Comparative and demographic analysis of orang-utan genomes. Nature 2011, 469:529-533.
-
(2011)
Nature
, vol.469
, pp. 529-533
-
-
Locke, D.P.1
-
76
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
Li H., Durbin R. Inference of human population history from individual whole-genome sequences. Nature 2011, 475:493-496.
-
(2011)
Nature
, vol.475
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
77
-
-
84865964725
-
Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change
-
Miller W., et al. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:382-390.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 382-390
-
-
Miller, W.1
-
78
-
-
84888261459
-
Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data
-
(in press)
-
Nadachowska-Brzyska K., et al. Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data. PLoS Genet. 2013, (in press).
-
(2013)
PLoS Genet.
-
-
Nadachowska-Brzyska, K.1
-
79
-
-
84879621036
-
Estimating variable effective population sizes from multiple genomes: a sequentially Markov conditional sampling distribution approach
-
Sheehan S., et al. Estimating variable effective population sizes from multiple genomes: a sequentially Markov conditional sampling distribution approach. Genetics 2013, 194:647-662.
-
(2013)
Genetics
, vol.194
, pp. 647-662
-
-
Sheehan, S.1
-
80
-
-
84862499260
-
The genomics of speciation-with-gene-flow
-
Feder J.L., et al. The genomics of speciation-with-gene-flow. Trends Genet. 2012, 28:342-350.
-
(2012)
Trends Genet.
, vol.28
, pp. 342-350
-
-
Feder, J.L.1
-
81
-
-
84255162318
-
Genomic divergence during speciation: causes and consequences
-
Nosil P., Feder J.L. Genomic divergence during speciation: causes and consequences. Phil. Trans. R. Soc. B 2012, 367:332-342.
-
(2012)
Phil. Trans. R. Soc. B
, vol.367
, pp. 332-342
-
-
Nosil, P.1
Feder, J.L.2
-
82
-
-
84878452722
-
Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes
-
Keller I., et al. Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes. Mol. Ecol. 2013, 22:2848-2863.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 2848-2863
-
-
Keller, I.1
-
83
-
-
84879023569
-
The genomic consequences of adaptive divergence and reproductive isolation between species of manakins
-
Parchman T.L., et al. The genomic consequences of adaptive divergence and reproductive isolation between species of manakins. Mol. Ecol. 2013, 22:3304-3317.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 3304-3317
-
-
Parchman, T.L.1
-
84
-
-
84862977387
-
The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
-
Floudas D., et al. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 2012, 336:1715-1719.
-
(2012)
Science
, vol.336
, pp. 1715-1719
-
-
Floudas, D.1
-
85
-
-
84863230553
-
Insights into hominid evolution from the gorilla genome sequence
-
Scally A., et al. Insights into hominid evolution from the gorilla genome sequence. Nature 2012, 483:169-175.
-
(2012)
Nature
, vol.483
, pp. 169-175
-
-
Scally, A.1
-
86
-
-
84875898037
-
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
-
Jia J., et al. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 2013, 496:91-95.
-
(2013)
Nature
, vol.496
, pp. 91-95
-
-
Jia, J.1
-
87
-
-
84878420758
-
The Norway spruce genome sequence and conifer genome evolution
-
Nystedt B., et al. The Norway spruce genome sequence and conifer genome evolution. Nature 2013, 497:579-584.
-
(2013)
Nature
, vol.497
, pp. 579-584
-
-
Nystedt, B.1
-
88
-
-
84873595859
-
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)
-
Dong Y., et al. Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nat. Biotechnol. 2013, 31:135-141.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 135-141
-
-
Dong, Y.1
-
89
-
-
84873175933
-
Reference-assisted chromosome assembly
-
Kim J., et al. Reference-assisted chromosome assembly. Proc. Natl. Acad. Sci. U.S.A. 2013, 110:1785-1790.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 1785-1790
-
-
Kim, J.1
-
90
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
91
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald J.H., Kreitman M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 1991, 351:652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
92
-
-
0030000951
-
Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans
-
Rand D.M., Kann L.M. Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans. Mol. Biol. Evol. 1996, 13:735-748.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 735-748
-
-
Rand, D.M.1
Kann, L.M.2
-
94
-
-
84874595353
-
Genome of the Chinese tree shrew
-
Fan Y., et al. Genome of the Chinese tree shrew. Nat. Commun. 2013, 4:1426.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1426
-
-
Fan, Y.1
-
95
-
-
80053359585
-
The genome of the green anole lizard and a comparative analysis with birds and mammals
-
Alfoldi J., et al. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 2011, 477:587-591.
-
(2011)
Nature
, vol.477
, pp. 587-591
-
-
Alfoldi, J.1
-
96
-
-
84878729685
-
The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
-
Wang Z., et al. The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Nat. Genet. 2013, 45:701-706.
-
(2013)
Nat. Genet.
, vol.45
, pp. 701-706
-
-
Wang, Z.1
-
97
-
-
84864249563
-
Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
-
Chiari Y., et al. Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria). BMC Biol. 2012, 10:65.
-
(2012)
BMC Biol.
, vol.10
, pp. 65
-
-
Chiari, Y.1
-
98
-
-
84876271982
-
The African coelacanth genome provides insights into tetrapod evolution
-
Amemiya C.T., et al. The African coelacanth genome provides insights into tetrapod evolution. Nature 2013, 496:311-316.
-
(2013)
Nature
, vol.496
, pp. 311-316
-
-
Amemiya, C.T.1
-
99
-
-
84875692135
-
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
-
Smith J.J., et al. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat. Genet. 2013, 45:415-421.
-
(2013)
Nat. Genet.
, vol.45
, pp. 415-421
-
-
Smith, J.J.1
-
100
-
-
84878607707
-
The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits
-
Schartl M., et al. The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits. Nat. Genet. 2013, 45:567-572.
-
(2013)
Nat. Genet.
, vol.45
, pp. 567-572
-
-
Schartl, M.1
-
101
-
-
81855174762
-
The Monarch butterfly genome yields insights into long-distance migration
-
Zhan S., et al. The Monarch butterfly genome yields insights into long-distance migration. Cell 2011, 147:1171-1185.
-
(2011)
Cell
, vol.147
, pp. 1171-1185
-
-
Zhan, S.1
-
102
-
-
84875909456
-
The genomes of four tapeworm species reveal adaptations to parasitism
-
Tsai I.J., et al. The genomes of four tapeworm species reveal adaptations to parasitism. Nature 2013, 496:57-63.
-
(2013)
Nature
, vol.496
, pp. 57-63
-
-
Tsai, I.J.1
-
103
-
-
79960422847
-
Genome sequence and analysis of the tuber crop potato
-
Consortium P.G.S. Genome sequence and analysis of the tuber crop potato. Nature 2011, 475:189-195.
-
(2011)
Nature
, vol.475
, pp. 189-195
-
-
Consortium, P.G.S.1
-
104
-
-
84871428041
-
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
-
Paterson A.H., et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 2012, 492:423-427.
-
(2012)
Nature
, vol.492
, pp. 423-427
-
-
Paterson, A.H.1
-
105
-
-
84866941666
-
The draft genome of a diploid cotton Gossypium raimondii
-
Wang K., et al. The draft genome of a diploid cotton Gossypium raimondii. Nat. Genet. 2012, 44:1098-1103.
-
(2012)
Nat. Genet.
, vol.44
, pp. 1098-1103
-
-
Wang, K.1
-
106
-
-
84871962223
-
The draft genome of sweet orange (Citrus sinensis)
-
Xu Q., et al. The draft genome of sweet orange (Citrus sinensis). Nat. Genet. 2013, 45:59-66.
-
(2013)
Nat. Genet.
, vol.45
, pp. 59-66
-
-
Xu, Q.1
-
107
-
-
84878553926
-
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
-
Verde I., et al. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat. Genet. 2013, 45:487-494.
-
(2013)
Nat. Genet.
, vol.45
, pp. 487-494
-
-
Verde, I.1
-
108
-
-
84864339018
-
Insights into salt tolerance from the genome of Thellungiella salsuginea
-
Wu H-J., et al. Insights into salt tolerance from the genome of Thellungiella salsuginea. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:12219-12224.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 12219-12224
-
-
Wu, H.-J.1
|