-
1
-
-
33746724137
-
The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches
-
Abzhanov, A., Kuo, W. P., Hartmann, C., Grant, B. R., Grant, P. R. and Tabin, C. J. (2006). The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches. Nature 442, 563-567.
-
(2006)
Nature
, vol.442
, pp. 563-567
-
-
Abzhanov, A.1
Kuo, W.P.2
Hartmann, C.3
Grant, B.R.4
Grant, P.R.5
Tabin, C.J.6
-
2
-
-
69549083476
-
Genome-wide identification of genes involved in tolerance to various environmental stresses in Saccharomyces cerevisiae
-
Auesukaree, C., Damnernsawad, A., Kruatrachue, M., Pokethitiyook, P., Boonchird, C., Kaneko, Y. and Harashima, S. (2009). Genome-wide identification of genes involved in tolerance to various environmental stresses in Saccharomyces cerevisiae. J. Appl. Genet. 50, 301-310.
-
(2009)
J. Appl. Genet.
, vol.50
, pp. 301-310
-
-
Auesukaree, C.1
Damnernsawad, A.2
Kruatrachue, M.3
Pokethitiyook, P.4
Boonchird, C.5
Kaneko, Y.6
Harashima, S.7
-
3
-
-
84872855352
-
Genomic basis for coral resilience to climate change
-
Barshis, D. J., Ladner, J. T., Oliver, T. A., Seneca, F. O., Traylor-Knowles, N. and Palumbi, S. R. (2013). Genomic basis for coral resilience to climate change. Proc. Natl. Acad. Sci. USA 110, 1387-1392.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 1387-1392
-
-
Barshis, D.J.1
Ladner, J.T.2
Oliver, T.A.3
Seneca, F.O.4
Traylor-Knowles, N.5
Palumbi, S.R.6
-
4
-
-
34547519199
-
Evolution of chromosome organization driven by selection for reduced gene expression noise
-
Batada,N. N. and Hurst, L. D. (2007). Evolution of chromosome organization driven by selection for reduced gene expression noise. Nat. Genet. 39, 945-949.
-
(2007)
Nat. Genet.
, vol.39
, pp. 945-949
-
-
Batada, N.N.1
Hurst, L.D.2
-
5
-
-
33746631391
-
Evolutionary and physiological importance of hub proteins
-
Batada, N. N., Hurst, L. D. and Tyers, M. (2006). Evolutionary and physiological importance of hub proteins. PLoS Comput. Biol. 2, e88.
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. e88
-
-
Batada, N.N.1
Hurst, L.D.2
Tyers, M.3
-
6
-
-
84882985838
-
2
-
2. Philos. Trans. R. Soc. B. Biol. Sci. 368, 20130049.
-
(2013)
Philos. Trans. R. Soc. B. Biol. Sci.
, vol.368
, pp. 20130049
-
-
Benner, I.1
Diner, R.E.2
Lefebvre, S.C.3
Li, D.4
Komada, T.5
Carpenter, E.J.6
Stillman, J.H.7
-
7
-
-
81755187328
-
Multiple means to the same end: The genetic basis of acquired stress resistance in yeast
-
Berry, D. B., Guan, Q., Hose, J., Haroon, S., Gebbia, M., Heisler, L. E., Nislow, C., Giaever, G. and Gasch, A. P. (2011). Multiple means to the same end: The genetic basis of acquired stress resistance in yeast. PLoS Genet. 7, e1002353.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002353
-
-
Berry, D.B.1
Guan, Q.2
Hose, J.3
Haroon, S.4
Gebbia, M.5
Heisler, L.E.6
Nislow, C.7
Giaever, G.8
Gasch, A.P.9
-
8
-
-
39749083997
-
Inducible and constitutive heat shock gene expression responds to modification of Hsp70 copy number in Drosophila melanogaster but does not compensate for loss of thermotolerance in Hsp70 null flies
-
Bettencourt, B. R., Hogan, C. C., Nimali, M. and Drohan, B. W. (2008). Inducible and constitutive heat shock gene expression responds to modification of Hsp70 copy number in Drosophila melanogaster but does not compensate for loss of thermotolerance in Hsp70 null flies. BMC Biol. 6, 5.
-
(2008)
BMC Biol.
, vol.6
, pp. 5
-
-
Bettencourt, B.R.1
Hogan, C.C.2
Nimali, M.3
Drohan, B.W.4
-
9
-
-
84884322007
-
Model of gene expression in extreme cold - reference transcriptome for the high-Antarctic cryopelagic notothenioid fish Pagothenia borchgrevinki
-
Bilyk, K. T. and Cheng, C.-H. C. (2013). Model of gene expression in extreme cold - reference transcriptome for the high-Antarctic cryopelagic notothenioid fish Pagothenia borchgrevinki. BMC Genomics 14, 634.
-
(2013)
BMC Genomics
, vol.14
, pp. 634
-
-
Bilyk, K.T.1
Cheng, C.-H.C.2
-
10
-
-
0842309871
-
Genomewide RNAi analysis of growth and Viability in Drosophila cells
-
Boutros, M., Kiger, A. A., Armknecht, S., Kerr, K., Hild, M., Koch, B., Haas, S. A., Heidelberg Fly Array Consortium, Paro, R. and Perrimon, N. (2004). Genomewide RNAi analysis of growth and Viability in Drosophila cells. Science 303, 832-835.
-
(2004)
Science
, vol.303
, pp. 832-835
-
-
Boutros, M.1
Kiger, A.A.2
Armknecht, S.3
Kerr, K.4
Hild, M.5
Koch, B.6
Haas, S.A.7
-
11
-
-
60449102620
-
CDNA microarray analysis reveals the capacity of the cold-adapted Antarctic fish Trematomus bernacchii to alter gene expression in response to heat stress
-
Buckley, B. A. and Somero, G. N. (2009). cDNA microarray analysis reveals the capacity of the cold-adapted Antarctic fish Trematomus bernacchii to alter gene expression in response to heat stress. Polar Biol. 32, 403-415.
-
(2009)
Polar Biol.
, vol.32
, pp. 403-415
-
-
Buckley, B.A.1
Somero, G.N.2
-
12
-
-
8444247983
-
Regulation of heat shock genes in isolated hepatocytes from an Antarctic fish, Trematomus bernacchii
-
Buckley, B. A., Place, S. P. and Hofmann, G. E. (2004). Regulation of heat shock genes in isolated hepatocytes from an Antarctic fish, Trematomus bernacchii. J. Exp. Biol. 207, 3649-3656.
-
(2004)
J. Exp. Biol.
, vol.207
, pp. 3649-3656
-
-
Buckley, B.A.1
Place, S.P.2
Hofmann, G.E.3
-
13
-
-
0346728473
-
Systematic genome-wide screens of gene function
-
Carpenter, A. E. and Sabatini, D. M. (2004). Systematic genome-wide screens of gene function. Nat. Rev. Genet. 5, 11-22.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 11-22
-
-
Carpenter, A.E.1
Sabatini, D.M.2
-
14
-
-
0029897603
-
Bioinformatics and the discovery of gene function
-
Casari, G., de Daruvar, A., Sander, C. and Schneider, R. (1996). Bioinformatics and the discovery of gene function. Trends Genet. 12, 244-245.
-
(1996)
Trends Genet.
, vol.12
, pp. 244-245
-
-
Casari, G.1
De Daruvar, A.2
Sander, C.3
Schneider, R.4
-
15
-
-
84860257802
-
Interplay between gene expression noise and regulatory network architecture
-
Chalancon, G., Ravarani, C. N. J., Balaji, S., Martinez-Arias, A., Aravind, L., Jothi, R. and Babu, M. M. (2012). Interplay between gene expression noise and regulatory network architecture. Trends Genet. 28, 221-232.
-
(2012)
Trends Genet.
, vol.28
, pp. 221-232
-
-
Chalancon, G.1
Ravarani, C.N.J.2
Balaji, S.3
Martinez-Arias, A.4
Aravind, L.5
Jothi, R.6
Babu, M.M.7
-
16
-
-
65949092011
-
A transcriptomic analysis of land-use impacts on the oyster, Crassostrea virginica, in the South Atlantic bight
-
Chapman, R. W., Mancia, A., Beal, M., Veloso, A., Rathburn, C., Blair, A., Sanger, D., Holland, A. F., Warr, G. W. and Didonato, G. U. Y. (2009). A transcriptomic analysis of land-use impacts on the oyster, Crassostrea virginica, in the South Atlantic bight. Mol. Ecol. 18, 2415-2425.
-
(2009)
Mol. Ecol.
, vol.18
, pp. 2415-2425
-
-
Chapman, R.W.1
Mancia, A.2
Beal, M.3
Veloso, A.4
Rathburn, C.5
Blair, A.6
Sanger, D.7
Holland, A.F.8
Warr, G.W.9
Didonato, G.U.Y.10
-
17
-
-
79953049110
-
The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions
-
Chapman, R. W., Mancia, A., Beal, M., Veloso, A., Rathburn, C., Blair, A., Holland, A. F., Warr, G. W., Didinato, G., Sokolova, I. M. et al. (2011). The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions. Mol. Ecol. 20, 1431-1449.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 1431-1449
-
-
Chapman, R.W.1
Mancia, A.2
Beal, M.3
Veloso, A.4
Rathburn, C.5
Blair, A.6
Holland, A.F.7
Warr, G.W.8
Didinato, G.9
Sokolova, I.M.10
-
18
-
-
84901256517
-
Ovary transcriptome profiling via artificial intelligence reveals a transcriptomic fingerprint predicting egg quality in Striped Bass, Morone saxatilis
-
Chapman, R. W., Reading, B. J. and Sullivan, C. V. (2014). Ovary transcriptome profiling via artificial intelligence reveals a transcriptomic fingerprint predicting egg quality in Striped Bass, Morone saxatilis. PLoS ONE 9, e96818.
-
(2014)
PLoS ONE
, vol.9
, pp. e96818
-
-
Chapman, R.W.1
Reading, B.J.2
Sullivan, C.V.3
-
19
-
-
84863602540
-
Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same Age
-
Chen,W.-H., Trachana, K., Lercher, M. J. and Bork, P. (2012). Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same Age. Mol. Biol. Evol. 29, 1703-1706.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1703-1706
-
-
Chen, W.-H.1
Trachana, K.2
Lercher, M.J.3
Bork, P.4
-
20
-
-
37648999313
-
Distinguishing protein-coding and noncoding genes in the human genome
-
Clamp, M., Fry, B., Kamal, M., Xie, X., Cuff, J., Lin, M. F., Kellis, M., Lindblad- Toh, K. and Lander, E. S. (2007). Distinguishing protein-coding and noncoding genes in the human genome. Proc. Natl. Acad. Sci. USA 104, 19428-19433.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19428-19433
-
-
Clamp, M.1
Fry, B.2
Kamal, M.3
Xie, X.4
Cuff, J.5
Lin, M.F.6
Kellis, M.7
Lindblad- Toh, K.8
Lander, E.S.9
-
21
-
-
0037067570
-
Role for stearoyl-CoA desaturase-1 in leptin-mediated weight loss
-
Cohen, P., Miyazaki, M., Socci, N. D., Hagge-Greenberg, A., Liedtke, W., Soukas, A. A., Sharma, R., Hudgins, L. C., Ntambi, J. M. and Friedman, J. M. (2002). Role for stearoyl-CoA desaturase-1 in leptin-mediated weight loss. Science 297, 240-243.
-
(2002)
Science
, vol.297
, pp. 240-243
-
-
Cohen, P.1
Miyazaki, M.2
Socci, N.D.3
Hagge-Greenberg, A.4
Liedtke, W.5
Soukas, A.A.6
Sharma, R.7
Hudgins, L.C.8
Ntambi, J.M.9
Friedman, J.M.10
-
22
-
-
79551632781
-
The ecoresponsive genome of Daphnia pulex
-
Colbourne, J. K., Pfrender, M. E., Gilbert, D., Thomas,W. K., Tucker, A., Oakley, T. H., Tokishita, S., Aerts, A., Arnold, G. J., Basu, M. K. et al. (2011). The ecoresponsive genome of Daphnia pulex. Science 331, 555-561.
-
(2011)
Science
, vol.331
, pp. 555-561
-
-
Colbourne, J.K.1
Pfrender, M.E.2
Gilbert, D.3
Thomas, W.K.4
Tucker, A.5
Oakley, T.H.6
Tokishita, S.7
Aerts, A.8
Arnold, G.J.9
Basu, M.K.10
-
23
-
-
0346672411
-
Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans
-
Conant, G. C. andWagner, A. (2004). Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans. Proc. R. Soc. Lond. B Biol. Sci. 271, 89-96.
-
(2004)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.271
, pp. 89-96
-
-
Conant, G.C.1
Wagner, A.2
-
24
-
-
33746025348
-
Post-genomic approaches to understanding the mechanisms of environmentally induced phenotypic plasticity
-
Cossins, A., Fraser, J., Hughes, M. and Gracey, A. (2006). Post-genomic approaches to understanding the mechanisms of environmentally induced phenotypic plasticity. J. Exp. Biol. 209, 2328-2336.
-
(2006)
J. Exp. Biol.
, vol.209
, pp. 2328-2336
-
-
Cossins, A.1
Fraser, J.2
Hughes, M.3
Gracey, A.4
-
25
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo, M., Baryshnikova, A., Bellay, J., Kim, Y., Spear, E. D., Sevier, C. S., Ding, H., Koh, J. L. Y., Toufighi, K., Mostafavi, S. et al. (2010). The genetic landscape of a cell. Science 327, 425-431.
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
Ding, H.7
Koh, J.L.Y.8
Toufighi, K.9
Mostafavi, S.10
-
26
-
-
84871206169
-
Fold change and p-value cutoffs significantly alter microarray interpretations
-
Dalman, M. R., Deeter, A., Nimishakavi, G. and Duan, Z.-H. (2012). Fold change and p-value cutoffs significantly alter microarray interpretations. BMC Bioinformatics 13, S11.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S11
-
-
Dalman, M.R.1
Deeter, A.2
Nimishakavi, G.3
Duan, Z.-H.4
-
27
-
-
84896718031
-
Molecular mechanisms of system responses to novel stimuli are predictable from public data
-
Danziger, S. A., Ratushny, A. V., Smith, J. J., Saleem, R. A., Wan, Y., Arens, C. E., Armstrong, A. M., Sitko, K., Chen, W.-M., Chiang, J.-H. et al. (2014). Molecular mechanisms of system responses to novel stimuli are predictable from public data. Nucleic Acids Res. 42, 1442-1460.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1442-1460
-
-
Danziger, S.A.1
Ratushny, A.V.2
Smith, J.J.3
Saleem, R.A.4
Wan, Y.5
Arens, C.E.6
Armstrong, A.M.7
Sitko, K.8
Chen, W.-M.9
Chiang, J.-H.10
-
28
-
-
81355139585
-
Controlling gene expression in response to stress
-
de Nadal, E., Ammerer, G. and Posas, F. (2011). Controlling gene expression in response to stress. Nat. Rev. Genet. 12, 833-845.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 833-845
-
-
De Nadal, E.1
Ammerer, G.2
Posas, F.3
-
29
-
-
72949089708
-
Global signatures of protein and mRNA expression levels
-
de Sousa Abreu, R., Penalva, L. O., Marcotte, E. M. and Vogel, C. (2009). Global signatures of protein and mRNA expression levels. Mol. Biosyst. 5, 1512-1526.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1512-1526
-
-
De Sousa Abreu, R.1
Penalva, L.O.2
Marcotte, E.M.3
Vogel, C.4
-
30
-
-
84867503105
-
The simple fool's guide to population genomics via RNA-Seq: An introduction to high-throughput sequencing data analysis
-
De Wit, P., Pespeni, M. H., Ladner, J. T., Barshis, D. J., Seneca, F., Jaris, H., Therkildsen, N. O., Morikawa, M. and Palumbi, S. R. (2012). The simple fool's guide to population genomics via RNA-Seq: An introduction to high-throughput sequencing data analysis. Mol. Ecol. Resour. 12, 1058-1067.
-
(2012)
Mol. Ecol. Resour.
, vol.12
, pp. 1058-1067
-
-
De Wit, P.1
Pespeni, M.H.2
Ladner, J.T.3
Barshis, D.J.4
Seneca, F.5
Jaris, H.6
Therkildsen, N.O.7
Morikawa, M.8
Palumbi, S.R.9
-
31
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Drosophila 12 Genomes Consortium (2007). Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
-
32
-
-
84860681436
-
Defining the limits of physiological plasticity: How gene expression can assess and predict the consequences of ocean change
-
Evans, T. G. and Hofmann, G. E. (2012). Defining the limits of physiological plasticity: How gene expression can assess and predict the consequences of ocean change. Philos. Trans. R. Soc. B. Biol. Sci. 367, 1733-1745.
-
(2012)
Philos. Trans. R. Soc. B. Biol. Sci.
, vol.367
, pp. 1733-1745
-
-
Evans, T.G.1
Hofmann, G.E.2
-
33
-
-
55949127895
-
A microarray-based transcriptomic timecourse of hyper- And hypo-osmotic stress signaling events in the euryhaline fish Gillichthys mirabilis: Osmosensors to effectors
-
Evans, T. G. and Somero, G. N. (2008). A microarray-based transcriptomic timecourse of hyper- And hypo-osmotic stress signaling events in the euryhaline fish Gillichthys mirabilis: Osmosensors to effectors. J. Exp. Biol. 211, 3636-3649.
-
(2008)
J. Exp. Biol.
, vol.211
, pp. 3636-3649
-
-
Evans, T.G.1
Somero, G.N.2
-
34
-
-
80054818697
-
Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration
-
Evans, T. G., Hammill, E. D. D., Kaukinen, K., Schulze, A. D., Patterson, D. A., English, K. K., Curtis, J. M. R. and Miller, K. M. (2011). Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration. Mol. Ecol. 20, 4472-4489.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 4472-4489
-
-
Evans, T.G.1
Hammill, E.D.D.2
Kaukinen, K.3
Schulze, A.D.4
Patterson, D.A.5
English, K.K.6
Curtis, J.M.R.7
Miller, K.M.8
-
35
-
-
84875222874
-
Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment
-
Evans, T. G., Chan, F., Menge, B. A. and Hofmann, G. E. (2013). Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment. Mol. Ecol. 22, 1609-1625.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 1609-1625
-
-
Evans, T.G.1
Chan, F.2
Menge, B.A.3
Hofmann, G.E.4
-
36
-
-
0042766481
-
Evolutionary and ecological functional genomics
-
Feder, M. E. and Mitchell-Olds, T. (2003). Evolutionary and ecological functional genomics. Nat. Rev. Genet. 4, 649-655.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 649-655
-
-
Feder, M.E.1
Mitchell-Olds, T.2
-
37
-
-
22144492269
-
The biological limitations of transcriptomics in elucidating stress and stress responses
-
Feder, M. E. and Walser, J.-C. (2005). The biological limitations of transcriptomics in elucidating stress and stress responses. J. Evol. Biol. 18, 901-910.
-
(2005)
J. Evol. Biol.
, vol.18
, pp. 901-910
-
-
Feder, M.E.1
Walser, J.-C.2
-
38
-
-
84890242685
-
Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallop Chlamys farreri
-
Fu, X., Sun, Y., Wang, J., Xing, Q., Zou, J., Li, R., Wang, Z., Wang, S., Hu, X., Zhang, L. et al. (2014). Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallop Chlamys farreri. Mol. Ecol. Resour. 14, 184-198.
-
(2014)
Mol. Ecol. Resour.
, vol.14
, pp. 184-198
-
-
Fu, X.1
Sun, Y.2
Wang, J.3
Xing, Q.4
Zou, J.5
Li, R.6
Wang, Z.7
Wang, S.8
Hu, X.9
Zhang, L.10
-
39
-
-
84902491546
-
The yeast deletion collection: A decade of functional genomics
-
Giaever, G. and Nislow, C. (2014). The yeast deletion collection: A decade of functional genomics. Genetics 197, 451-465.
-
(2014)
Genetics
, vol.197
, pp. 451-465
-
-
Giaever, G.1
Nislow, C.2
-
40
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever, G., Chu, A. M., Ni, L., Connelly, C., Riles, L., Véronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., André, B. et al. (2002). Functional profiling of the Saccharomyces cerevisiae genome. Nature 418, 387-391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Véronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
André, B.10
-
41
-
-
84887438140
-
Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes
-
Gibney, P. A., Lu, C., Caudy, A. A., Hess, D. C. and Botstein, D. (2013). Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes. Proc. Natl. Acad. Sci. USA 110, E4393-E4402.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. E4393-E4402
-
-
Gibney, P.A.1
Lu, C.2
Caudy, A.A.3
Hess, D.C.4
Botstein, D.5
-
42
-
-
84874262560
-
Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum
-
Gibson, A. K., Smith, Z., Fuqua, C., Clay, K. and Colbourne, J. K. (2013). Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum. BMC Genomics 14, 135.
-
(2013)
BMC Genomics
, vol.14
, pp. 135
-
-
Gibson, A.K.1
Smith, Z.2
Fuqua, C.3
Clay, K.4
Colbourne, J.K.5
-
43
-
-
33644749260
-
Loss of Hsp70 in Drosophila is pleiotropic, with effects on thermotolerance, recovery from heat shock and neurodegeneration
-
Gong,W. J. and Golic, K. G. (2006). Loss of Hsp70 in Drosophila is pleiotropic, with effects on thermotolerance, recovery from heat shock and neurodegeneration. Genetics 172, 275-286.
-
(2006)
Genetics
, vol.172
, pp. 275-286
-
-
Gong, W.J.1
Golic, K.G.2
-
44
-
-
34249686485
-
Interpreting physiological responses to environmental change through gene expression profiling
-
Gracey, A. Y. (2007). Interpreting physiological responses to environmental change through gene expression profiling. J. Exp. Biol. 210, 1584-1592.
-
(2007)
J. Exp. Biol.
, vol.210
, pp. 1584-1592
-
-
Gracey, A.Y.1
-
45
-
-
0037974525
-
Application of microarray technology in environmental and comparative physiology
-
Gracey, A. Y. and Cossins, A. R. (2003). Application of microarray technology in environmental and comparative physiology. Annu. Rev. Physiol. 65, 231-259.
-
(2003)
Annu. Rev. Physiol.
, vol.65
, pp. 231-259
-
-
Gracey, A.Y.1
Cossins, A.R.2
-
46
-
-
80052226717
-
Hypoxia-induced mobilization of stored triglycerides in the euryoxic goby Gillichthys mirabilis
-
Gracey, A. Y., Lee, T.-H., Higashi, R. M. and Fan, T. (2011). Hypoxia-induced mobilization of stored triglycerides in the euryoxic goby Gillichthys mirabilis. J. Exp. Biol. 214, 3005-3012.
-
(2011)
J. Exp. Biol.
, vol.214
, pp. 3005-3012
-
-
Gracey, A.Y.1
Lee, T.-H.2
Higashi, R.M.3
Fan, T.4
-
47
-
-
0141920354
-
Comparing protein abundance and mRNA expression levels on a genomic scale
-
Greenbaum, D., Colangelo, C., Williams, K. and Gerstein, M. (2003). Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol. 4, 117.
-
(2003)
Genome Biol.
, vol.4
, pp. 117
-
-
Greenbaum, D.1
Colangelo, C.2
Williams, K.3
Gerstein, M.4
-
48
-
-
84876869300
-
Identification of a tissue-selective heat shock response regulatory network
-
Guisbert, E., Czyz, D. M., Richter, K., McMullen, P. D. and Morimoto, R. I. (2013). Identification of a tissue-selective heat shock response regulatory network. PLoS Genet. 9, e1003466.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003466
-
-
Guisbert, E.1
Czyz, D.M.2
Richter, K.3
McMullen, P.D.4
Morimoto, R.I.5
-
49
-
-
63449142392
-
Filtering for increased power for microarray data analysis
-
Hackstadt, A. J. and Hess, A. M. (2009). Filtering for increased power for microarray data analysis. BMC Bioinformatics 10, 11.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 11
-
-
Hackstadt, A.J.1
Hess, A.M.2
-
50
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han, J.-D. J., Bertin, N., Hao, T., Goldberg, D. S., Berriz, G. F., Zhang, L. V., Dupuy, D., Walhout, A. J. M., Cusick, M. E., Roth, F. P. et al. (2004). Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430, 88-93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.-D.J.1
Bertin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
Zhang, L.V.6
Dupuy, D.7
Walhout, A.J.M.8
Cusick, M.E.9
Roth, F.P.10
-
51
-
-
18944372150
-
Integrating phenotypic and expression profiles to map arsenic-response networks
-
Haugen, A. C., Kelley, R., Collins, J. B., Tucker, C. J., Deng, C., Afshari, C. A., Brown, M. J., Ideker, T. and Van Houten, B. (2004). Integrating phenotypic and expression profiles to map arsenic-response networks. Genome Biol. 5, R95.
-
(2004)
Genome Biol.
, vol.5
, pp. R95
-
-
Haugen, A.C.1
Kelley, R.2
Collins, J.B.3
Tucker, C.J.4
Deng, C.5
Afshari, C.A.6
Brown, M.J.7
Ideker, T.8
Van Houten, B.9
-
52
-
-
77951194033
-
Heat shock response of killifish (Fundulus heteroclitus): Candidate gene and heterologous microarray approaches
-
Healy, T. M., Tymchuk, W. E., Osborne, E. J. and Schulte, P. M. (2010). Heat shock response of killifish (Fundulus heteroclitus): Candidate gene and heterologous microarray approaches. Physiol. Genomics 41, 171-184.
-
(2010)
Physiol. Genomics
, vol.41
, pp. 171-184
-
-
Healy, T.M.1
Tymchuk, W.E.2
Osborne, E.J.3
Schulte, P.M.4
-
53
-
-
28844480448
-
Genomics in C. elegans: So many genes, such a little worm
-
Hillier, L. W., Coulson, A., Murray, J. I., Bao, Z., Sulston, J. E. and Waterston, R. H. (2005). Genomics in C. elegans: So many genes, such a little worm. Genome Res. 15, 1651-1660.
-
(2005)
Genome Res.
, vol.15
, pp. 1651-1660
-
-
Hillier, L.W.1
Coulson, A.2
Murray, J.I.3
Bao, Z.4
Sulston, J.E.5
Waterston, R.H.6
-
55
-
-
0033836161
-
Heat-shock protein expression is absent in the Antarctic fish Trematomus bernacchii (family Nototheniidae)
-
Hofmann, G. E., Buckley, B. A., Airaksinen, S., Keen, J. E. and Somero, G. N. (2000). Heat-shock protein expression is absent in the Antarctic fish Trematomus bernacchii (family Nototheniidae). J. Exp. Biol. 203, 2331-2339.
-
(2000)
J. Exp. Biol.
, vol.203
, pp. 2331-2339
-
-
Hofmann, G.E.1
Buckley, B.A.2
Airaksinen, S.3
Keen, J.E.4
Somero, G.N.5
-
56
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D. W., Sherman, B. T. and Lempicki, R. A. (2008). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4, 44-57.
-
(2008)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
57
-
-
84890830350
-
Saccharomyces cerevisiae genes involved in survival of heat shock
-
Jarolim, S., Ayer, A., Pillay, B., Gee, A. C., Phrakaysone, A., Perrone, G. G., Breitenbach, M. and Dawes, I. W. (2013). Saccharomyces cerevisiae genes involved in survival of heat shock. G3 3, 2321-2333.
-
(2013)
G3
, vol.3
, pp. 2321-2333
-
-
Jarolim, S.1
Ayer, A.2
Pillay, B.3
Gee, A.C.4
Phrakaysone, A.5
Perrone, G.G.6
Breitenbach, M.7
Dawes, I.W.8
-
58
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong, H., Mason, S. P., Barabasi, A.-L. and Oltvai, Z. N. (2001). Lethality and centrality in protein networks. Nature 411, 41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.-L.3
Oltvai, Z.N.4
-
59
-
-
84876807823
-
A systematic genome-wide analysis of zebrafish protein-coding gene function
-
Kettleborough, R. N.W., Busch-Nentwich, E. M., Harvey, S. A., Dooley, C. M., de Bruijn, E., van Eeden, F., Sealy, I., White, R. J., Herd, C., Nijman, I. J. et al. (2013). A systematic genome-wide analysis of zebrafish protein-coding gene function. Nature 496, 494-497.
-
(2013)
Nature
, vol.496
, pp. 494-497
-
-
Kettleborough, R.N.W.1
Busch-Nentwich, E.M.2
Harvey, S.A.3
Dooley, C.M.4
De Bruijn, E.5
Van Eeden, F.6
Sealy, I.7
White, R.J.8
Herd, C.9
Nijman, I.J.10
-
60
-
-
69449089723
-
More than just orphans: Are taxonomically-restricted genes important in evolution?
-
Khalturin, K., Hemmrich, G., Fraune, S., Augustin, R. and Bosch, T. C. G. (2009). More than just orphans: Are taxonomically-restricted genes important in evolution? Trends Genet. 25, 404-413.
-
(2009)
Trends Genet.
, vol.25
, pp. 404-413
-
-
Khalturin, K.1
Hemmrich, G.2
Fraune, S.3
Augustin, R.4
Bosch, T.C.G.5
-
61
-
-
77953255163
-
Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe
-
Kim,D.-U.,Hayles, J.,Kim,D.,Wood, V., Park,H.-O.,Won,M., Yoo, H.-S.,Duhig, T., Nam, M., Palmer, G. et al. (2010). Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat Biotech. 28, 617-623.
-
(2010)
Nat Biotech.
, vol.28
, pp. 617-623
-
-
Kim, D.-U.1
Hayles, J.2
Kim, D.3
Wood, V.4
Park, H.-O.5
Won, M.6
Yoo, H.-S.7
Duhig, T.8
Nam, M.9
Palmer, G.10
-
62
-
-
0141454834
-
Evolution of the cellular stress proteome: From monophyletic origin to ubiquitous function
-
Kültz, D. (2003). Evolution of the cellular stress proteome: From monophyletic origin to ubiquitous function. J. Exp. Biol. 206, 3119-3124.
-
(2003)
J. Exp. Biol.
, vol.206
, pp. 3119-3124
-
-
Kültz, D.1
-
63
-
-
15544377794
-
Molecular and evolutionary basis of the cellular stress response
-
Kültz, D. (2005). Molecular and evolutionary basis of the cellular stress response. Annu. Rev. Physiol. 67, 225-257.
-
(2005)
Annu. Rev. Physiol.
, vol.67
, pp. 225-257
-
-
Kültz, D.1
-
64
-
-
84886993480
-
CRISPR interference (CRISPRi) for sequence-specific control of gene expression
-
Larson, M. H., Gilbert, L. A., Wang, X., Lim, W. A., Weissman, J. S. and Qi, L. S. (2013). CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nat. Protoc. 8, 2180-2196.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 2180-2196
-
-
Larson, M.H.1
Gilbert, L.A.2
Wang, X.3
Lim, W.A.4
Weissman, J.S.5
Qi, L.S.6
-
65
-
-
67449095889
-
Computational methods for discovering gene networks from expression data
-
Lee, W.-P. and Tzou, W.-S. (2009). Computational methods for discovering gene networks from expression data. Brief. Bioinform. 10, 408-423.
-
(2009)
Brief. Bioinform.
, vol.10
, pp. 408-423
-
-
Lee, W.-P.1
Tzou, W.-S.2
-
66
-
-
42949131308
-
Selection to minimise noise in living systems and its implications for the evolution of gene expression
-
Lehner, B. (2008). Selection to minimise noise in living systems and its implications for the evolution of gene expression. Mol. Syst. Biol. 4, 170.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 170
-
-
Lehner, B.1
-
67
-
-
34447637417
-
Mouse duplicate genes are as essential as singletons
-
Liao, B.-Y. and Zhang, J. (2007). Mouse duplicate genes are as essential as singletons. Trends Genet. 23, 378-381.
-
(2007)
Trends Genet.
, vol.23
, pp. 378-381
-
-
Liao, B.-Y.1
Zhang, J.2
-
68
-
-
78751653787
-
Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus)
-
Lockwood, B. L. and Somero, G. N. (2011). Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus). Mol. Ecol. 20, 517-529.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 517-529
-
-
Lockwood, B.L.1
Somero, G.N.2
-
69
-
-
77957850989
-
Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): Molecular correlates of invasive success
-
Lockwood, B. L., Sanders, J. G. and Somero, G. N. (2010). Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): Molecular correlates of invasive success. J. Exp. Biol. 213, 3548-3558.
-
(2010)
J. Exp. Biol.
, vol.213
, pp. 3548-3558
-
-
Lockwood, B.L.1
Sanders, J.G.2
Somero, G.N.3
-
70
-
-
84942618141
-
Transcriptomic responses to environmental temperature in eurythermal and stenothermal fishes
-
Logan, C. A. and Buckley, B. A. (2015). Transcriptomic responses to environmental temperature in eurythermal and stenothermal fishes. J. Exp. Biol. 218, 1915-1924.
-
(2015)
J. Exp. Biol.
, vol.218
, pp. 1915-1924
-
-
Logan, C.A.1
Buckley, B.A.2
-
71
-
-
77956683214
-
Transcriptional responses to thermal acclimation in the eurythermal fish Gillichthys mirabilis (Cooper 1864)
-
Logan, C. A. and Somero, G. N. (2010). Transcriptional responses to thermal acclimation in the eurythermal fish Gillichthys mirabilis (Cooper 1864). Am. J. Physiol. Regul. Integr. Comp. Physiol. 299, R843-R852.
-
(2010)
Am. J. Physiol. Regul. Integr. Comp. Physiol.
, vol.299
, pp. R843-R852
-
-
Logan, C.A.1
Somero, G.N.2
-
72
-
-
47649125318
-
Tuning gene expression to changing environments: From rapid responses to evolutionary adaptation
-
López-Maury, L., Marguerat, S. and Bähler, J. (2008). Tuning gene expression to changing environments: From rapid responses to evolutionary adaptation. Nat. Rev. Genet. 9, 583-593.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 583-593
-
-
López-Maury, L.1
Marguerat, S.2
Bähler, J.3
-
73
-
-
34247217200
-
Hubs in biological interaction networks exhibit low changes in expression in experimental asthma
-
Lu, X., Jain, V. V., Finn, P. W. and Perkins, D. L. (2007). Hubs in biological interaction networks exhibit low changes in expression in experimental asthma. Mol. Syst. Biol. 3, 98.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 98
-
-
Lu, X.1
Jain, V.V.2
Finn, P.W.3
Perkins, D.L.4
-
74
-
-
79953886457
-
Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression
-
MacNeil, L. T. andWalhout, A. J. M. (2011). Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression. Genome Res. 21, 645-657.
-
(2011)
Genome Res.
, vol.21
, pp. 645-657
-
-
MacNeil, L.T.1
Walhout, A.J.M.2
-
75
-
-
71149108056
-
Correlation of mRNA and protein in complex biological samples
-
Maier, T., Güell, M. and Serrano, L. (2009). Correlation of mRNA and protein in complex biological samples. FEBS Lett. 583, 3966-3973.
-
(2009)
FEBS Lett.
, vol.583
, pp. 3966-3973
-
-
Maier, T.1
Güell, M.2
Serrano, L.3
-
76
-
-
69549116022
-
2DE-proteomics meta-data indicate the existence of distinct cellular stress-responsive mechanisms
-
Mariman, E. C. M. (2009). 2DE-proteomics meta-data indicate the existence of distinct cellular stress-responsive mechanisms. Expert Rev. Proteomics 6, 337-339.
-
(2009)
Expert Rev. Proteomics
, vol.6
, pp. 337-339
-
-
Mariman, E.C.M.1
-
77
-
-
0037250990
-
Transposon mutagenesis in the study of plant development
-
May, B. P. and Martienssen, R. A. (2003). Transposon mutagenesis in the study of plant development. CRC Crit. Rev. Plant Sci. 22, 1-35.
-
(2003)
CRC Crit. Rev. Plant Sci.
, vol.22
, pp. 1-35
-
-
May, B.P.1
Martienssen, R.A.2
-
78
-
-
79960319150
-
Protein microarrays for genome-wide posttranslational modification analysis
-
Merbl, Y. and Kirschner, M. W. (2011). Protein microarrays for genome-wide posttranslational modification analysis. Wiley Interdiscip. Rev. Syst. Biol. Med. 3, 347-356.
-
(2011)
Wiley Interdiscip. Rev. Syst. Biol. Med.
, vol.3
, pp. 347-356
-
-
Merbl, Y.1
Kirschner, M.W.2
-
79
-
-
76749154478
-
Gene expression profiling of genetically determined growth variation in bivalve larvae (Crassostrea gigas)
-
Meyer, E. and Manahan, D. T. (2010). Gene expression profiling of genetically determined growth variation in bivalve larvae (Crassostrea gigas). J. Exp. Biol. 213, 749-758.
-
(2010)
J. Exp. Biol.
, vol.213
, pp. 749-758
-
-
Meyer, E.1
Manahan, D.T.2
-
80
-
-
58149464713
-
Ssd1 is required for thermotolerance and Hsp104-mediated protein disaggregation in Saccharomyces cerevisiae
-
Mir, S. S., Fiedler, D. and Cashikar, A. G. (2009). Ssd1 is required for thermotolerance and Hsp104-mediated protein disaggregation in Saccharomyces cerevisiae. Mol. Cell. Biol. 29, 187-200.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 187-200
-
-
Mir, S.S.1
Fiedler, D.2
Cashikar, A.G.3
-
81
-
-
84857680487
-
Life at the extreme: Lessons from the genome
-
Oh, D.-H., Dassanayake, M., Bonhert, H. J. and Cheeseman, J. M. (2012). Life at the extreme: Lessons from the genome. Genome Biol. 13, 241.
-
(2012)
Genome Biol.
, vol.13
, pp. 241
-
-
Oh, D.-H.1
Dassanayake, M.2
Bonhert, H.J.3
Cheeseman, J.M.4
-
82
-
-
78751570979
-
RNA sequencing: Advances, challenges and opportunities
-
Ozsolak, F. and Milos, P. M. (2011). RNA sequencing: Advances, challenges and opportunities. Nat. Rev. Genet. 12, 87-98.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.M.2
-
83
-
-
84901216800
-
Mechanisms of reef coral resistance to future climate change
-
Palumbi, S. R., Barshis, D. J., Traylor-Knowles, N. and Bay, R. A. (2014). Mechanisms of reef coral resistance to future climate change. Science 344, 895-898.
-
(2014)
Science
, vol.344
, pp. 895-898
-
-
Palumbi, S.R.1
Barshis, D.J.2
Traylor-Knowles, N.3
Bay, R.A.4
-
84
-
-
84876835091
-
Evolutionary change during experimental ocean acidification
-
Pespeni, M. H., Sanford, E., Gaylord, B., Hill, T. M., Hosfelt, J. D., Jaris, H. K., LaVigne, M., Lenz, E. A., Russell, A. D., Young, M. K. et al. (2013). Evolutionary change during experimental ocean acidification. Proc. Natl. Acad. Sci. USA 110, 6937-6942.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 6937-6942
-
-
Pespeni, M.H.1
Sanford, E.2
Gaylord, B.3
Hill, T.M.4
Hosfelt, J.D.5
Jaris, H.K.6
LaVigne, M.7
Lenz, E.A.8
Russell, A.D.9
Young, M.K.10
-
85
-
-
43549094212
-
Déjà vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins
-
Petrak, J., Ivanek, R., Toman, O., Cmejla, R., Cmejlova, J., Vyoral, D., Zivny, J. and Vulpe, C. D. (2008). Déjà vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins. Proteomics 8, 1744-1749.
-
(2008)
Proteomics
, vol.8
, pp. 1744-1749
-
-
Petrak, J.1
Ivanek, R.2
Toman, O.3
Cmejla, R.4
Cmejlova, J.5
Vyoral, D.6
Zivny, J.7
Vulpe, C.D.8
-
86
-
-
17844411188
-
Comparison of Hsc70 orthologs from polar and temperate notothenioid fishes: Differences in prevention of aggregation and refolding of denatured proteins
-
Place, S. P. and Hofmann, G. E. (2005). Comparison of Hsc70 orthologs from polar and temperate notothenioid fishes: Differences in prevention of aggregation and refolding of denatured proteins. Am. J. Physiol. Regul. Integr. Comp. Physiol. 288, R1195-R1202.
-
(2005)
Am. J. Physiol. Regul. Integr. Comp. Physiol.
, vol.288
, pp. R1195-R1202
-
-
Place, S.P.1
Hofmann, G.E.2
-
87
-
-
3242769102
-
Constitutive roles for inducible genes: Evidence for the alteration in expression of the inducible hsp70 gene in Antarctic notothenioid fishes
-
Place, S. P., Zippay, M. L. and Hofmann, G. E. (2004). Constitutive roles for inducible genes: Evidence for the alteration in expression of the inducible hsp70 gene in Antarctic notothenioid fishes. Am. J. Physiol. Regul. Integr. Comp. Physiol. 287, R429-R436.
-
(2004)
Am. J. Physiol. Regul. Integr. Comp. Physiol.
, vol.287
, pp. R429-R436
-
-
Place, S.P.1
Zippay, M.L.2
Hofmann, G.E.3
-
88
-
-
77956256747
-
Transcriptional regulation is only half the story
-
Plotkin, J. B. (2010). Transcriptional regulation is only half the story. Mol. Syst. Biol. 6, 406.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 406
-
-
Plotkin, J.B.1
-
89
-
-
3142533071
-
Changes in gene expression associated with acclimation to constant temperatures and fluctuating daily temperatures in an annual killifish Austrofundulus limnaeus
-
Podrabsky, J. E. and Somero, G. N. (2004). Changes in gene expression associated with acclimation to constant temperatures and fluctuating daily temperatures in an annual killifish Austrofundulus limnaeus. J. Exp. Biol. 207, 2237-2254.
-
(2004)
J. Exp. Biol.
, vol.207
, pp. 2237-2254
-
-
Podrabsky, J.E.1
Somero, G.N.2
-
90
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi, L. S., Larson,M. H., Gilbert, L. A., Doudna, J. A.,Weissman, J. S., Arkin, A. P. and Lim, W. A. (2013). Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152, 1173-1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
91
-
-
84893414355
-
RNA-Seq technology and its application in fish transcriptomics
-
Qian, X., Ba, Y., Zhuang, Q. and Zhong, G. (2014). RNA-Seq technology and its application in fish transcriptomics. OMICS 18, 98-110.
-
(2014)
OMICS
, vol.18
, pp. 98-110
-
-
Qian, X.1
Ba, Y.2
Zhuang, Q.3
Zhong, G.4
-
92
-
-
84882714530
-
Data-based filtering for replicated high-throughput transcriptome sequencing experiments
-
Rau, A., Gallopin, M., Celeux, G. and Jaffrézic, F. (2013). Data-based filtering for replicated high-throughput transcriptome sequencing experiments. Bioinformatics 29, 2146-2152.
-
(2013)
Bioinformatics
, vol.29
, pp. 2146-2152
-
-
Rau, A.1
Gallopin, M.2
Celeux, G.3
Jaffrézic, F.4
-
93
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W. and Selbach, M. (2011). Global quantification of mammalian gene expression control. Nature 473, 337-342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhäusser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
94
-
-
84910633516
-
Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes
-
Shaw, J. R., Hampton, T. H., King, B. L., Whitehead, A., Galvez, F., Gross, R. H., Keith, N., Notch, E., Jung, D., Glaholt, S. P. et al. (2014). Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes. Mol. Biol. Evol. 31, 3002-3015.
-
(2014)
Mol. Biol. Evol.
, vol.31
, pp. 3002-3015
-
-
Shaw, J.R.1
Hampton, T.H.2
King, B.L.3
Whitehead, A.4
Galvez, F.5
Gross, R.H.6
Keith, N.7
Notch, E.8
Jung, D.9
Glaholt, S.P.10
-
95
-
-
84855258498
-
A genetic screening strategy identifies novel regulators of the proteostasis network
-
Silva, M. C., Fox, S., Beam, M., Thakkar, H., Amaral, M. D. and Morimoto, R. I. (2011). A genetic screening strategy identifies novel regulators of the proteostasis network. PLoS Genet. 7, e1002438.
-
(2011)
LoS Genet.
, vol.7
, pp. e1002438
-
-
Silva, M.C.1
Fox, S.2
Beam, M.3
Thakkar, H.4
Amaral, M.D.5
Morimoto, R.I.6
-
96
-
-
44949168530
-
Modularity of stress response evolution
-
Singh, A. H., Wolf, D. M., Wang, P. and Arkin, A. P. (2008). Modularity of stress response evolution. Proc. Natl. Acad. Sci. USA 105, 7500-7505.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 7500-7505
-
-
Singh, A.H.1
Wolf, D.M.2
Wang, P.3
Arkin, A.P.4
-
97
-
-
79959210305
-
A conditional knockout resource for the genome-wide study of mouse gene function
-
Skarnes, W. C., Rosen, B., West, A. P., Koutsourakis, M., Bushell, W., Iyer, V., Mujica, A. O., Thomas, M., Harrow, J., Cox, T. et al. (2011). A conditional knockout resource for the genome-wide study of mouse gene function. Nature 474, 337-342.
-
(2011)
Nature
, vol.474
, pp. 337-342
-
-
Skarnes, W.C.1
Rosen, B.2
West, A.P.3
Koutsourakis, M.4
Bushell, W.5
Iyer, V.6
Mujica, A.O.7
Thomas, M.8
Harrow, J.9
Cox, T.10
-
98
-
-
79960005539
-
Comparative physiology: A "crystal ball" for predicting consequences of global change
-
Somero, G. N. (2011). Comparative physiology: A "crystal ball" for predicting consequences of global change. Am. J. Physiol. Regul. Integr. Comp. Physiol. 301, R1-R14.
-
(2011)
Am. J. Physiol. Regul. Integr. Comp. Physiol.
, vol.301
, pp. R1-R14
-
-
Somero, G.N.1
-
99
-
-
83655164864
-
The physiology of global change: Linking patterns to mechanisms
-
Somero, G. N. (2012). The physiology of global change: Linking patterns to mechanisms. Annu. Rev. Mar. Sci. 4, 39-61.
-
(2012)
Annu. Rev. Mar. Sci.
, vol.4
, pp. 39-61
-
-
Somero, G.N.1
-
100
-
-
4243088097
-
The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
-
Stein, L. D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M. R., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A. et al. (2003). The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics. PLoS Biol. 1, e45.
-
(2003)
PLoS Biol.
, vol.1
, pp. e45
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
-
101
-
-
70349883811
-
Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes
-
Stillman, J. H. and Tagmount, A. (2009). Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes. Mol. Ecol. 18, 4206-4226.
-
(2009)
Mol. Ecol.
, vol.18
, pp. 4206-4226
-
-
Stillman, J.H.1
Tagmount, A.2
-
102
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J. D. and Tibshirani, R. (2003). Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100, 9440-9445.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
103
-
-
84863843952
-
Metabolism in the age of 'omes'
-
Suarez, R. K. and Moyes, C. D. (2012). Metabolism in the age of 'omes'. J. Exp. Biol. 215, 2351-2357.
-
(2012)
J. Exp. Biol.
, vol.215
, pp. 2351-2357
-
-
Suarez, R.K.1
Moyes, C.D.2
-
104
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S. et al. (2005). Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102, 15545-15550.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
105
-
-
0031890960
-
Marginal fitness contributions of nonessential genes in yeast
-
Thatcher, J. W., Shaw, J. M. and Dickinson, W. J. (1998). Marginal fitness contributions of nonessential genes in yeast. Proc. Natl. Acad. Sci. USA 95, 253-257.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 253-257
-
-
Thatcher, J.W.1
Shaw, J.M.2
Dickinson, W.J.3
-
106
-
-
0037249501
-
PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification
-
Thomas, P. D., Kejariwal, A., Campbell, M. J., Mi, H., Diemer, K., Guo, N., Ladunga, I., Ulitsky-Lazareva, B., Muruganujan, A., Rabkin, S. et al. (2003). PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res. 31, 334-341.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 334-341
-
-
Thomas, P.D.1
Kejariwal, A.2
Campbell, M.J.3
Mi, H.4
Diemer, K.5
Guo, N.6
Ladunga, I.7
Ulitsky-Lazareva, B.8
Muruganujan, A.9
Rabkin, S.10
-
107
-
-
20144368638
-
Integrated genomic and proteomic analyses of gene expression in mammalian cells
-
Tian, Q., Stepaniants, S. B., Mao, M., Weng, L., Feetham, M. C., Doyle, M. J., Yi, E. C., Dai, H., Thorsson, V., Eng, J. et al. (2004). Integrated genomic and proteomic analyses of gene expression in mammalian cells. Mol. Cell. Proteomics 3, 960-969.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 960-969
-
-
Tian, Q.1
Stepaniants, S.B.2
Mao, M.3
Weng, L.4
Feetham, M.C.5
Doyle, M.J.6
Yi, E.C.7
Dai, H.8
Thorsson, V.9
Eng, J.10
-
108
-
-
77649211464
-
Variation in the heat shock response and its implication for predicting the effect of global climate change on species' biogeographical distribution ranges and metabolic costs
-
Tomanek, L. (2010). Variation in the heat shock response and its implication for predicting the effect of global climate change on species' biogeographical distribution ranges and metabolic costs. J. Exp. Biol. 213, 971-979.
-
(2010)
J. Exp. Biol.
, vol.213
, pp. 971-979
-
-
Tomanek, L.1
-
109
-
-
84858439862
-
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
-
Vogel, C. and Marcotte, E. M. (2012). Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat. Rev. Genet. 13, 227-232.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 227-232
-
-
Vogel, C.1
Marcotte, E.M.2
-
110
-
-
79957438702
-
Rapid evolution of coral proteins responsible for interaction with the environment
-
Voolstra, C. R., Sunagawa, S., Matz,M. V., Bayer, T., Aranda, M., Buschiazzo, E., DeSalvo, M. K., Lindquist, E., Szmant, A. M., Coffroth, M. A. et al. (2011). Rapid evolution of coral proteins responsible for interaction with the environment. PLoS ONE 6, e20392.
-
(2011)
PLoS ONE
, vol.6
, pp. e20392
-
-
Voolstra, C.R.1
Sunagawa, S.2
Matz, M.V.3
Bayer, T.4
Aranda, M.5
Buschiazzo, E.6
DeSalvo, M.K.7
Lindquist, E.8
Szmant, A.M.9
Coffroth, M.A.10
-
111
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M. and Snyder, M. (2009a). RNA-Seq: A revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
112
-
-
67649184787
-
Generally detected proteins in comparative proteomics - A matter of cellular stress response?
-
Wang, P., Bouwman, F. G. and Mariman, E. C. M. (2009b). Generally detected proteins in comparative proteomics - A matter of cellular stress response? Proteomics 9, 2955-2966.
-
(2009)
Proteomics
, vol.9
, pp. 2955-2966
-
-
Wang, P.1
Bouwman, F.G.2
Mariman, E.C.M.3
-
113
-
-
0347994900
-
High-resolution yeast phenomics resolves different physiological features in the saline response
-
Warringer, J., Ericson, E., Fernandez, L., Nerman, O. and Blomberg, A. (2003). High-resolution yeast phenomics resolves different physiological features in the saline response. Proc. Natl. Acad. Sci. USA 100, 15724-15729.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15724-15729
-
-
Warringer, J.1
Ericson, E.2
Fernandez, L.3
Nerman, O.4
Blomberg, A.5
-
114
-
-
84902984154
-
Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment
-
Welch, A. J., Bedoya-Reina, O. C., Carretero-Paulet, L., Miller, W., Rode, K. D. and Lindqvist, C. (2014). Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment. Genome Biol. Evol. 6, 433-450.
-
(2014)
Genome Biol. Evol.
, vol.6
, pp. 433-450
-
-
Welch, A.J.1
Bedoya-Reina, O.C.2
Carretero-Paulet, L.3
Miller, W.4
Rode, K.D.5
Lindqvist, C.6
-
115
-
-
84858681859
-
Comparative genomics in ecological physiology: Toward a more nuanced understanding of acclimation and adaptation
-
Whitehead, A. (2012). Comparative genomics in ecological physiology: Toward a more nuanced understanding of acclimation and adaptation. J. Exp. Biol. 215, 884-891.
-
(2012)
J. Exp. Biol.
, vol.215
, pp. 884-891
-
-
Whitehead, A.1
-
116
-
-
79954995183
-
Genomic mechanisms of evolved physiological plasticity in killifish distributed along an environmental salinity gradient
-
Whitehead, A., Roach, J. L., Zhang, S. and Galvez, F. (2011). Genomic mechanisms of evolved physiological plasticity in killifish distributed along an environmental salinity gradient. Proc. Natl. Acad. Sci. USA 108, 6193-6198.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 6193-6198
-
-
Whitehead, A.1
Roach, J.L.2
Zhang, S.3
Galvez, F.4
-
117
-
-
84880141750
-
Common functional targets of adaptive micro- And macro-evolutionary divergence in killifish
-
Whitehead, A., Zhang, S., Roach, J. L. and Galvez, F. (2013). Common functional targets of adaptive micro- And macro-evolutionary divergence in killifish. Mol. Ecol. 22, 3780-3796.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 3780-3796
-
-
Whitehead, A.1
Zhang, S.2
Roach, J.L.3
Galvez, F.4
-
118
-
-
80052324168
-
Towards a system level understanding of non-model organisms sampled from the environment: A network biology approach
-
Williams, T. D., Turan, N., Diab, A. M., Wu, H., Mackenzie, C., Bartie, K. L., Hrydziuszko, O., Lyons, B. P., Stentiford, G. D., Herbert, J. M. et al. (2011). Towards a system level understanding of non-model organisms sampled from the environment: A network biology approach. PLoS Comput. Biol. 7, e1002126.
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. e1002126
-
-
Williams, T.D.1
Turan, N.2
Diab, A.M.3
Wu, H.4
Mackenzie, C.5
Bartie, K.L.6
Hrydziuszko, O.7
Lyons, B.P.8
Stentiford, G.D.9
Herbert, J.M.10
-
119
-
-
22144491675
-
Orphans as taxonomically restricted and ecologically important genes
-
Wilson, G. A., Bertrand, N., Patel, Y., Hughes, J. B., Feil, E. J. and Field, D. (2005). Orphans as taxonomically restricted and ecologically important genes. Microbiology 151, 2499-2501.
-
(2005)
Microbiology
, vol.151
, pp. 2499-2501
-
-
Wilson, G.A.1
Bertrand, N.2
Patel, Y.3
Hughes, J.B.4
Feil, E.J.5
Field, D.6
-
120
-
-
0037148758
-
The genome sequence of Schizosaccharomyces pombe
-
Wood, V. Gwilliam, R. Rajandream, M.-A. Lyne, M. Lyne, R. Stewart, A. Sgouros, J. Peat, N. Hayles, J. Baker, S. et al. (2002). The genome sequence of Schizosaccharomyces pombe. Nature 415, 871-880.
-
(2002)
Nature
, vol.415
, pp. 871-880
-
-
Wood, V.1
Gwilliam, R.2
Rajandream, M.-A.3
Lyne, M.4
Lyne, R.5
Stewart, A.6
Sgouros, J.7
Peat, N.8
Hayles, J.9
Baker, S.10
-
121
-
-
34347262079
-
Hepatic knockdown of stearoyl-CoA desaturase 1 via RNA interference in obese mice decreases lipid content and changes fatty acid composition
-
Xu, H., Wilcox, D., Nguyen, P., Voorbach, M., Smith, H., Brodjian, S., Suhar, T., Reilly, R. M., Jacobson, P. B., Collins, C. A. et al. (2007). Hepatic knockdown of stearoyl-CoA desaturase 1 via RNA interference in obese mice decreases lipid content and changes fatty acid composition. Front. Biosci. 12, 3781-3794.
-
(2007)
Front. Biosci.
, vol.12
, pp. 3781-3794
-
-
Xu, H.1
Wilcox, D.2
Nguyen, P.3
Voorbach, M.4
Smith, H.5
Brodjian, S.6
Suhar, T.7
Reilly, R.M.8
Jacobson, P.B.9
Collins, C.A.10
|