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Volumn 6, Issue 10, 2014, Pages 879-899

The transcriptome of the bowhead whale Balaena mysticetus reveals adaptations of the longest-lived mammal

Author keywords

Aging; Avolution; Bowhead whale; Insulin IGF1 axis; Transcriptome

Indexed keywords

TRANSCRIPTOME;

EID: 84920755014     PISSN: 19454589     EISSN: None     Source Type: Journal    
DOI: 10.18632/aging.100699     Document Type: Article
Times cited : (65)

References (109)
  • 2
    • 0035929321 scopus 로고    scopus 로고
    • Origin of whales from early artiodactyls: hands and feet of Eocene Protocetidae from Pakistan
    • Gingerich PD, Haq M, Zalmout IS, Khan IH and Malkani MS. Origin of whales from early artiodactyls: hands and feet of Eocene Protocetidae from Pakistan. Science. 2001; 293:2239-2242.
    • (2001) Science. , vol.293 , pp. 2239-2242
    • Gingerich, P.D.1    Haq, M.2    Zalmout, I.S.3    Khan, I.H.4    Malkani, M.S.5
  • 3
    • 37548999034 scopus 로고    scopus 로고
    • Whales originated from aquatic artiodactyls in the Eocene epoch of India
    • Thewissen JG, Cooper LN, Clementz MT, Bajpai S and Tiwari BN. Whales originated from aquatic artiodactyls in the Eocene epoch of India. Nature. 2007; 450:1190-1194.
    • (2007) Nature. , vol.450 , pp. 1190-1194
    • Thewissen, J.G.1    Cooper, L.N.2    Clementz, M.T.3    Bajpai, S.4    Tiwari, B.N.5
  • 4
    • 0033305908 scopus 로고    scopus 로고
    • Age and growth estimates of bowhead whales (Balaena mysticetus) via aspartic acid racemization
    • George JC, Bada J, Zeh J, Scott L, Brown SE, O'Hara T and Suydam R. Age and growth estimates of bowhead whales (Balaena mysticetus) via aspartic acid racemization. Can. J. Zool. 1999; 77:571-580.
    • (1999) Can. J. Zool. , vol.77 , pp. 571-580
    • George, J.C.1    Bada, J.2    Zeh, J.3    Scott, L.4    Brown, S.E.5    O'Hara, T.6    Suydam, R.7
  • 5
    • 42249110353 scopus 로고    scopus 로고
    • Two historical weapon fragments as an aid to estimating the longevity and movements of bowhead whales
    • George JC and Bockstoce JR. Two historical weapon fragments as an aid to estimating the longevity and movements of bowhead whales. Polar Biol. 2008; 31:751-754.
    • (2008) Polar Biol. , vol.31 , pp. 751-754
    • George, J.C.1    Bockstoce, J.R.2
  • 6
  • 9
    • 84864959956 scopus 로고    scopus 로고
    • Dolphin genome provides evidence for adaptive evolution of nervous system genes and a molecular rate slowdown
    • McGowen MR, Grossman LI and Wildman DE. Dolphin genome provides evidence for adaptive evolution of nervous system genes and a molecular rate slowdown. Proc. Biol. Sci. 2012; 279:3643-3651.
    • (2012) Proc. Biol. Sci. , vol.279 , pp. 3643-3651
    • McGowen, M.R.1    Grossman, L.I.2    Wildman, D.E.3
  • 15
    • 79955001378 scopus 로고    scopus 로고
    • A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea
    • Geisler JH, McGowen MR, Yang G and Gatesy J. A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea. BMC Evol. Biol. 2011; 11:112.
    • (2011) BMC Evol. Biol. , vol.11 , pp. 112
    • Geisler, J.H.1    McGowen, M.R.2    Yang, G.3    Gatesy, J.4
  • 20
    • 26944466110 scopus 로고    scopus 로고
    • Structural basis for inhibition of the insulin receptor by the adaptor protein Grb14
    • Depetris RS, Hu J, Gimpelevich I, Holt LJ, Daly RJ, Hubbard SR. Structural basis for inhibition of the insulin receptor by the adaptor protein Grb14. Mol Cell. 2005; 20:325-333.
    • (2005) Mol Cell. , vol.20 , pp. 325-333
    • Depetris, R.S.1    Hu, J.2    Gimpelevich, I.3    Holt, L.J.4    Daly, R.J.5    Hubbard, S.R.6
  • 23
    • 44249118542 scopus 로고    scopus 로고
    • Dual effect of the adapter growth factor receptor-bound protein 14 (grb14) on insulin action in primary hepatocytes
    • Carre N, Cauzac M, Girard J and Burnol AF. Dual effect of the adapter growth factor receptor-bound protein 14 (grb14) on insulin action in primary hepatocytes. Endocrinology. 2008; 149:3109-3117.
    • (2008) Endocrinology. , vol.149 , pp. 3109-3117
    • Carre, N.1    Cauzac, M.2    Girard, J.3    Burnol, A.F.4
  • 24
    • 79951962147 scopus 로고    scopus 로고
    • CREB and the CRTC coactivators: sensors for hormonal and metabolic signals
    • Altarejos JY and Montminy M. CREB and the CRTC coactivators: sensors for hormonal and metabolic signals. Nat. Rev Mol. Cell Biol. 2011; 12:141-151.
    • (2011) Nat. Rev Mol. Cell Biol. , vol.12 , pp. 141-151
    • Altarejos, J.Y.1    Montminy, M.2
  • 27
    • 84906233839 scopus 로고    scopus 로고
    • Emerging functional similarities and divergences between Drosophila Spargel/dPGC-1 and mammalian PGC-1 protein
    • Mukherjee S, Basar MA, Davis C and Duttaroy A. Emerging functional similarities and divergences between Drosophila Spargel/dPGC-1 and mammalian PGC-1 protein. Front. Genet. 2014; 5:216.
    • (2014) Front. Genet. , vol.5 , pp. 216
    • Mukherjee, S.1    Basar, M.A.2    Davis, C.3    Duttaroy, A.4
  • 29
    • 2142751644 scopus 로고    scopus 로고
    • Overexpression of Insig-1 in the livers of transgenic mice inhibits SREBP processing and reduces insulinstimulated lipogenesis
    • Engelking LJ, Kuriyama H, Hammer RE, Horton JD, Brown MS, Goldstein JL and Liang G. Overexpression of Insig-1 in the livers of transgenic mice inhibits SREBP processing and reduces insulinstimulated lipogenesis. J. Clin. Invest. 2004; 113:1168-1175.
    • (2004) J. Clin. Invest. , vol.113 , pp. 1168-1175
    • Engelking, L.J.1    Kuriyama, H.2    Hammer, R.E.3    Horton, J.D.4    Brown, M.S.5    Goldstein, J.L.6    Liang, G.7
  • 30
    • 84896534793 scopus 로고    scopus 로고
    • Promoting longevity by maintaining metabolic and proliferative homeostasis
    • Wang L, Karpac J and Jasper H. Promoting longevity by maintaining metabolic and proliferative homeostasis. J. Exp. Biol. 2014; 217:109-118.
    • (2014) J. Exp. Biol. , vol.217 , pp. 109-118
    • Wang, L.1    Karpac, J.2    Jasper, H.3
  • 31
    • 50049133166 scopus 로고    scopus 로고
    • Regional variability in food availability for Arctic marine mammals
    • Bluhm BA and Gradinger R. Regional variability in food availability for Arctic marine mammals. Ecol. Appl. 2008; 18:S77-96.
    • (2008) Ecol. Appl. , vol.18 , pp. S77-96
    • Bluhm, B.A.1    Gradinger, R.2
  • 32
    • 84856938234 scopus 로고    scopus 로고
    • Evolution of the Arctic Calanus complex: an Arctic marine avocado?
    • Berge J, Gabrielsen TM, Moline M and Renaud PE. Evolution of the Arctic Calanus complex: an Arctic marine avocado? J. Plankton Res. 2012; 34:191-195.
    • (2012) J. Plankton Res. , vol.34 , pp. 191-195
    • Berge, J.1    Gabrielsen, T.M.2    Moline, M.3    Renaud, P.E.4
  • 33
    • 0002637940 scopus 로고
    • Proximate and elemental composition of gelatinous zooplankton from the Southern Ocean
    • Clarke A, Holmes LJ and Gore DJ. Proximate and elemental composition of gelatinous zooplankton from the Southern Ocean. J. Exp. Mar. Biol. Ecol. 1992; 155:55-68.
    • (1992) J. Exp. Mar. Biol. Ecol. , vol.155 , pp. 55-68
    • Clarke, A.1    Holmes, L.J.2    Gore, D.J.3
  • 34
    • 33846261455 scopus 로고    scopus 로고
    • Longevity of Mammals in Captivity: From the Living Collections of the World: A List of Mammalian Longevity in Captivity
    • (E. Schweizerbartsche Verlagsbuchhandlung).
    • Weigl R. (2005). Longevity of Mammals in Captivity: From the Living Collections of the World: A List of Mammalian Longevity in Captivity (E. Schweizerbartsche Verlagsbuchhandlung).
    • (2005)
    • Weigl, R.1
  • 35
    • 84866249131 scopus 로고    scopus 로고
    • Hemochromatosis and fatty liver disease: building evidence for insulin resistance in bottlenose dolphins (Tursiops truncatus)
    • Venn-Watson S, Benham C, Carlin K, DeRienzo D and St Leger J. Hemochromatosis and fatty liver disease: building evidence for insulin resistance in bottlenose dolphins (Tursiops truncatus). J. Zoo Wildl. Med. 2012; 43:S35-47.
    • (2012) J. Zoo Wildl. Med. , vol.43 , pp. S35-47
    • Venn-Watson, S.1    Benham, C.2    Carlin, K.3    DeRienzo, D.4    St Leger, J.5
  • 37
    • 78650305247 scopus 로고    scopus 로고
    • Dolphins as animal models for type 2 diabetes: sustained, post-prandial hyperglycemia and hyperinsulinemia
    • Venn-Watson S, Carlin K and Ridgway S. Dolphins as animal models for type 2 diabetes: sustained, post-prandial hyperglycemia and hyperinsulinemia. Gen. Comp. Endocrinol. 2011; 170:193-199.
    • (2011) Gen. Comp. Endocrinol. , vol.170 , pp. 193-199
    • Venn-Watson, S.1    Carlin, K.2    Ridgway, S.3
  • 38
    • 84877643626 scopus 로고    scopus 로고
    • Big mice die young but large animals live longer
    • Blagosklonny, MV. Big mice die young but large animals live longer. Aging (Albany NY). 2013; 5:227-233.
    • (2013) Aging (Albany NY). , vol.5 , pp. 227-233
    • Blagosklonny, M.V.1
  • 41
    • 12344335482 scopus 로고    scopus 로고
    • Long-lived growth hormone receptor knockout mice: interaction of reduced insulin-like growth factor i/insulin signaling and caloric restriction
    • Al-Regaiey KA, Masternak MM, Bonkowski M, Sun L and Bartke A. Long-lived growth hormone receptor knockout mice: interaction of reduced insulin-like growth factor i/insulin signaling and caloric restriction. Endocrinology. 2005; 146:851-860.
    • (2005) Endocrinology. , vol.146 , pp. 851-860
    • Al-Regaiey, K.A.1    Masternak, M.M.2    Bonkowski, M.3    Sun, L.4    Bartke, A.5
  • 44
    • 42249103657 scopus 로고    scopus 로고
    • Glucose tolerance and insulin sensitivity in an extremely long-living rodent, the naked mole-rat
    • Buffenstein R, Kang H and Biney A. Glucose tolerance and insulin sensitivity in an extremely long-living rodent, the naked mole-rat. FASEB J. 2007; 21:A1423.
    • (2007) FASEB J. , vol.21
    • Buffenstein, R.1    Kang, H.2    Biney, A.3
  • 45
    • 84892415195 scopus 로고    scopus 로고
    • FTO contributes to hepatic metabolism regulation through regulation of leptin action and STAT3 signalling in liver
    • Bravard A, Vial G, Chauvin MA, Rouille Y, Bailleul B, Vidal H and Rieusset J. FTO contributes to hepatic metabolism regulation through regulation of leptin action and STAT3 signalling in liver. Cell Commun. Signal. 2014; 12:4.
    • (2014) Cell Commun. Signal. , vol.12 , pp. 4
    • Bravard, A.1    Vial, G.2    Chauvin, M.A.3    Rouille, Y.4    Bailleul, B.5    Vidal, H.6    Rieusset, J.7
  • 46
    • 77957277779 scopus 로고    scopus 로고
    • Relationship between blood glucose levels and hepatic Fto mRNA expression in mice
    • Poritsanos NJ, Lew PS and Mizuno TM. Relationship between blood glucose levels and hepatic Fto mRNA expression in mice. Biochem. Biophys. Res. Commun. 2010; 400:713-717.
    • (2010) Biochem. Biophys. Res. Commun. , vol.400 , pp. 713-717
    • Poritsanos, N.J.1    Lew, P.S.2    Mizuno, T.M.3
  • 49
    • 2942605976 scopus 로고    scopus 로고
    • EphA2 receptor tyrosine kinase regulates endothelial cell migration and vascular assembly through phosphoinositide 3-kinase-mediated Rac1 GTPase activation
    • Brantley-Sieders DM, Caughron J, Hicks D, Pozzi A, Ruiz JC and Chen J. EphA2 receptor tyrosine kinase regulates endothelial cell migration and vascular assembly through phosphoinositide 3-kinase-mediated Rac1 GTPase activation. J. Cell. Sci. 2004; 117:2037-2049.
    • (2004) J. Cell. Sci. , vol.117 , pp. 2037-2049
    • Brantley-Sieders, D.M.1    Caughron, J.2    Hicks, D.3    Pozzi, A.4    Ruiz, J.C.5    Chen, J.6
  • 51
    • 80055053633 scopus 로고    scopus 로고
    • Endothelial nitric oxide synthase is a key mediator of hepatocyte proliferation in response to partial hepatectomy in mice
    • Mei Y and Thevananther S. Endothelial nitric oxide synthase is a key mediator of hepatocyte proliferation in response to partial hepatectomy in mice. Hepatology. 2011; 54:1777-1789.
    • (2011) Hepatology. , vol.54 , pp. 1777-1789
    • Mei, Y.1    Thevananther, S.2
  • 52
    • 37249080597 scopus 로고    scopus 로고
    • Sequential and synergistic modification of human RPA stimulates chromosomal DNA repair
    • Anantha RW, Vassin VM and Borowiec JA. Sequential and synergistic modification of human RPA stimulates chromosomal DNA repair. J. Biol. Chem. 2007; 282:35910-35923.
    • (2007) J. Biol. Chem. , vol.282 , pp. 35910-35923
    • Anantha, R.W.1    Vassin, V.M.2    Borowiec, J.A.3
  • 53
    • 84878964136 scopus 로고    scopus 로고
    • Translational regulation of RPA2 via internal ribosomal entry site and by eIF3a
    • Yin JY, Dong ZZ, Liu RY, Chen J, Liu ZQ and Zhang JT. Translational regulation of RPA2 via internal ribosomal entry site and by eIF3a. Carcinogenesis. 2013; 34:1224-1231.
    • (2013) Carcinogenesis. , vol.34 , pp. 1224-1231
    • Yin, J.Y.1    Dong, Z.Z.2    Liu, R.Y.3    Chen, J.4    Liu, Z.Q.5    Zhang, J.T.6
  • 54
    • 84859041600 scopus 로고    scopus 로고
    • Within- and between-species study of extreme longevity--comments, commonalities, and goals
    • Anson RM, Willcox B, Austad S and Perls T. Within- and between-species study of extreme longevity--comments, commonalities, and goals. J. Gerontol. A Biol. Sci. Med. Sci. 2012; 67:347-350.
    • (2012) J. Gerontol. A Biol. Sci. Med. Sci. , vol.67 , pp. 347-350
    • Anson, R.M.1    Willcox, B.2    Austad, S.3    Perls, T.4
  • 55
    • 84905259788 scopus 로고    scopus 로고
    • And the beat goes on: maintained cardiovascular function during aging in the longest-lived rodent, the naked mole-rat
    • Grimes KM, Reddy AK, Lindsey ML and Buffenstein R. And the beat goes on: maintained cardiovascular function during aging in the longest-lived rodent, the naked mole-rat. Am. J. Physiol. Heart Circ. Physiol. 2014; 307:H284-291.
    • (2014) Am. J. Physiol. Heart Circ. Physiol. , vol.307 , pp. H284-291
    • Grimes, K.M.1    Reddy, A.K.2    Lindsey, M.L.3    Buffenstein, R.4
  • 57
    • 67649259156 scopus 로고    scopus 로고
    • The role of nitrite in nitric oxide homeostasis: a comparative perspective
    • Jensen FB. The role of nitrite in nitric oxide homeostasis: a comparative perspective. Biochim. Biophys. Acta. 2009; 1787:841-848.
    • (2009) Biochim. Biophys. Acta. , vol.1787 , pp. 841-848
    • Jensen, F.B.1
  • 58
    • 63849262681 scopus 로고    scopus 로고
    • Nitric oxide increases myocardial efficiency in the hypoxia-tolerant turtle Trachemys scripta
    • Misfeldt M, Fago A and Gesser H. Nitric oxide increases myocardial efficiency in the hypoxia-tolerant turtle Trachemys scripta. J. Exp. Biol. 2009; 212:954-960.
    • (2009) J. Exp. Biol. , vol.212 , pp. 954-960
    • Misfeldt, M.1    Fago, A.2    Gesser, H.3
  • 62
    • 79957902010 scopus 로고    scopus 로고
    • Signal transduction by vascular endothelial growth factor receptors
    • Koch S, Tugues S, Li X, Gualandi L and Claesson-Welsh L. Signal transduction by vascular endothelial growth factor receptors. Biochem. J. 2011; 437:169-183.
    • (2011) Biochem. J. , vol.437 , pp. 169-183
    • Koch, S.1    Tugues, S.2    Li, X.3    Gualandi, L.4    Claesson-Welsh, L.5
  • 65
    • 84864397751 scopus 로고    scopus 로고
    • Genome stability, progressive kidney failure and aging
    • Lans H and Hoeijmakers JH. Genome stability, progressive kidney failure and aging. Nat. Genet. 2012; 44:836-838.
    • (2012) Nat. Genet. , vol.44 , pp. 836-838
    • Lans, H.1    Hoeijmakers, J.H.2
  • 66
    • 84870612586 scopus 로고    scopus 로고
    • Characterization of human Spartan/C1orf124, an ubiquitin-PCNA interacting regulator of DNA damage tolerance
    • Juhasz S, Balogh D, Hajdu I, Burkovics P, Villamil MA, Zhuang Z and Haracska L. Characterization of human Spartan/C1orf124, an ubiquitin-PCNA interacting regulator of DNA damage tolerance. Nucleic Acids Res. 2012; 40:10795-10808.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 10795-10808
    • Juhasz, S.1    Balogh, D.2    Hajdu, I.3    Burkovics, P.4    Villamil, M.A.5    Zhuang, Z.6    Haracska, L.7
  • 68
    • 64649088010 scopus 로고    scopus 로고
    • DNA ligase I deficiency leads to replicationdependent DNA damage and impacts cell morphology without blocking cell cycle progression
    • Soza S, Leva V, Vago R, Ferrari G, Mazzini G, Biamonti G and Montecucco A. DNA ligase I deficiency leads to replicationdependent DNA damage and impacts cell morphology without blocking cell cycle progression. Mol. Cell. Biol. 2009; 29:2032-2041.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 2032-2041
    • Soza, S.1    Leva, V.2    Vago, R.3    Ferrari, G.4    Mazzini, G.5    Biamonti, G.6    Montecucco, A.7
  • 69
    • 77951936924 scopus 로고    scopus 로고
    • Overexpression of JunB inhibits mitochondrial stress and cytotoxicity in human lymphoma cells exposed to chronic oxidative stress
    • Son YO, Heo JS, Kim TG, Jeon YM, Kim JG and Lee JC. Overexpression of JunB inhibits mitochondrial stress and cytotoxicity in human lymphoma cells exposed to chronic oxidative stress. BMB Rep. 2010; 43:57-61.
    • (2010) BMB Rep. , vol.43 , pp. 57-61
    • Son, Y.O.1    Heo, J.S.2    Kim, T.G.3    Jeon, Y.M.4    Kim, J.G.5    Lee, J.C.6
  • 71
    • 53649092150 scopus 로고    scopus 로고
    • Expression of Arl2 is associated with p53 localization and chemosensitivity in a breast cancer cell line
    • Beghin A, Matera EL, Brunet-Manquat S and Dumontet C. Expression of Arl2 is associated with p53 localization and chemosensitivity in a breast cancer cell line. Cell Cycle. 2008; 7:3074-3082.
    • (2008) Cell Cycle. , vol.7 , pp. 3074-3082
    • Beghin, A.1    Matera, E.L.2    Brunet-Manquat, S.3    Dumontet, C.4
  • 74
    • 84857758814 scopus 로고    scopus 로고
    • Consistency test of the cell cycle: roles for p53 and EGR1
    • Zwang Y, Oren M and Yarden Y. Consistency test of the cell cycle: roles for p53 and EGR1. Cancer Res. 2012; 72:1051-1054.
    • (2012) Cancer Res. , vol.72 , pp. 1051-1054
    • Zwang, Y.1    Oren, M.2    Yarden, Y.3
  • 78
    • 34250659350 scopus 로고    scopus 로고
    • More genes underwent positive selection in chimpanzee evolution than in human evolution
    • Bakewell MA, Shi P and Zhang J. More genes underwent positive selection in chimpanzee evolution than in human evolution. Proc. Natl. Acad. Sci. U.S.A. 2007; 104:7489-7494.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 7489-7494
    • Bakewell, M.A.1    Shi, P.2    Zhang, J.3
  • 79
    • 84886234946 scopus 로고    scopus 로고
    • Molecular insights into the historic demography of bowhead whales: understanding the evolutionary basis of contemporary management practices
    • Phillips CD, Hoffman JI, George JC, Suydam RS, Huebinger RM, Patton JC and Bickham JW. Molecular insights into the historic demography of bowhead whales: understanding the evolutionary basis of contemporary management practices. Ecol. Evol. 2012; 3:18-37.
    • (2012) Ecol. Evol. , vol.3 , pp. 18-37
    • Phillips, C.D.1    Hoffman, J.I.2    George, J.C.3    Suydam, R.S.4    Huebinger, R.M.5    Patton, J.C.6    Bickham, J.W.7
  • 82
    • 31344479283 scopus 로고    scopus 로고
    • Glycogen synthase kinase 3 and h-prune regulate cell migration by modulating focal adhesions
    • Kobayashi T, Hino S, Oue N, Asahara T, Zollo M, Yasui W and Kikuchi A. Glycogen synthase kinase 3 and h-prune regulate cell migration by modulating focal adhesions. Mol. Cell. Biol. 2006; 26:898-911
    • (2006) Mol. Cell. Biol. , vol.26 , pp. 898-911
    • Kobayashi, T.1    Hino, S.2    Oue, N.3    Asahara, T.4    Zollo, M.5    Yasui, W.6    Kikuchi, A.7
  • 84
    • 8844233491 scopus 로고    scopus 로고
    • Pierolapithecus catalaunicus, a new Middle Miocene great ape from Spain
    • Moya-Sola S, Kohler M, Alba DM, Casanovas-Vilar I and Galindo J. Pierolapithecus catalaunicus, a new Middle Miocene great ape from Spain. Science. 2004; 306:1339-1344.
    • (2004) Science. , vol.306 , pp. 1339-1344
    • Moya-Sola, S.1    Kohler, M.2    Alba, D.M.3    Casanovas-Vilar, I.4    Galindo, J.5
  • 86
    • 45849117649 scopus 로고    scopus 로고
    • Hominin life history: reconstruction and evolution
    • Robson SL and Wood B. Hominin life history: reconstruction and evolution. Journal Anat. 2008; 212:394-425.
    • (2008) Journal Anat. , vol.212 , pp. 394-425
    • Robson, S.L.1    Wood, B.2
  • 87
    • 1642416504 scopus 로고
    • Evolution of human longevity and the genetic complexity governing aging rate
    • Cutler RG. Evolution of human longevity and the genetic complexity governing aging rate. Proc. Natl. Acad. Sci. U.S.A. 1975; 72:4664-4668.
    • (1975) Proc. Natl. Acad. Sci. U.S.A. , vol.72 , pp. 4664-4668
    • Cutler, R.G.1
  • 89
    • 84871436996 scopus 로고    scopus 로고
    • Evolutionary dynamics of gene and isoform regulation in Mammalian tissues
    • Merkin J, Russell C, Chen P and Burge CB. Evolutionary dynamics of gene and isoform regulation in Mammalian tissues. Science. 2012; 338:1593-1599.
    • (2012) Science. , vol.338 , pp. 1593-1599
    • Merkin, J.1    Russell, C.2    Chen, P.3    Burge, C.B.4
  • 95
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R and Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013; 14:R36.
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 96
    • 84897397058 scopus 로고    scopus 로고
    • featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
    • Liao Y, Smyth GK and Shi W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 2014; 30:923-930.
    • (2014) Bioinformatics. , vol.30 , pp. 923-930
    • Liao, Y.1    Smyth, G.K.2    Shi, W.3
  • 97
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • Robinson MD and Oshlack A. A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 2010; 11:R25.
    • (2010) Genome Biol. , vol.11 , pp. R25
    • Robinson, M.D.1    Oshlack, A.2
  • 98
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ and Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010; 26:139-140.
    • (2010) Bioinformatics. , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 99
    • 84896735766 scopus 로고    scopus 로고
    • voom: precision weights unlock linear model analysis tools for RNA-seq read counts
    • Law CW, Chen Y, Shi W and Smyth GK. voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 2014; 15:R29.
    • (2014) Genome Biol. , vol.15 , pp. R29
    • Law, C.W.1    Chen, Y.2    Shi, W.3    Smyth, G.K.4
  • 101
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000; 17:540-552.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 102
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera G and Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 2007; 56:564-577.
    • (2007) Syst. Biol. , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 103
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014; 30:1312-1313.
    • (2014) Bioinformatics. , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 104
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007; 24:1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 106
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: a genomic mapping and alignment program for mRNA and EST sequences
    • Wu TD and Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics. 2005; 21:1859-1875.
    • (2005) Bioinformatics. , vol.21 , pp. 1859-1875
    • Wu, T.D.1    Watanabe, C.K.2
  • 107
    • 79952136825 scopus 로고    scopus 로고
    • Statistical properties of the branchsite test of positive selection
    • Yang Z and dos Reis M. Statistical properties of the branchsite test of positive selection. Mol. Biol. Evol. 2011; 28:1217-1228.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 1217-1228
    • Yang, Z.1    dos Reis, M.2
  • 108
    • 79957957884 scopus 로고    scopus 로고
    • High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes
    • Markova-Raina P and Petrov D. High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes. Genome Res. 2011; 21:863-874.
    • (2011) Genome Res. , vol.21 , pp. 863-874
    • Markova-Raina, P.1    Petrov, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.