-
1
-
-
50349096433
-
The phylogeny of Cetartiodactyla: the importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies
-
Agnarsson I., May-Collado L.J. The phylogeny of Cetartiodactyla: the importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies. Mol. Phylogenet. Evol. 2008, 48:964-985.
-
(2008)
Mol. Phylogenet. Evol.
, vol.48
, pp. 964-985
-
-
Agnarsson, I.1
May-Collado, L.J.2
-
2
-
-
0026589211
-
DNA systematics and the evolution of the artiodactyl family Bovidae
-
Allard M.W., Miyamoto M.M., Jarecki L., Kraus F., Tennant M.R. DNA systematics and the evolution of the artiodactyl family Bovidae. Proc. Nat. Acad. Sci. USA 1992, 89:3972-3976.
-
(1992)
Proc. Nat. Acad. Sci. USA
, vol.89
, pp. 3972-3976
-
-
Allard, M.W.1
Miyamoto, M.M.2
Jarecki, L.3
Kraus, F.4
Tennant, M.R.5
-
3
-
-
34249038091
-
New insights on population genetic structure of Delphinus delphis from the northeast Atlantic and phylogenetic relationships within the genus inferred from two mitochondrial markers
-
Amaral A.R., Sequeira M., Martínez-Cedeira J., Coelho M.M. New insights on population genetic structure of Delphinus delphis from the northeast Atlantic and phylogenetic relationships within the genus inferred from two mitochondrial markers. Mar. Biol. 2007, 151:1967-1976.
-
(2007)
Mar. Biol.
, vol.151
, pp. 1967-1976
-
-
Amaral, A.R.1
Sequeira, M.2
Martínez-Cedeira, J.3
Coelho, M.M.4
-
4
-
-
33846839390
-
Bayesian estimation of concordance among gene trees
-
Ané C., Larget B., Baum D.A., Smith S.D., Rokas A. Bayesian estimation of concordance among gene trees. Mol. Biol. Evol. 2007, 24:412-426.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 412-426
-
-
Ané, C.1
Larget, B.2
Baum, D.A.3
Smith, S.D.4
Rokas, A.5
-
5
-
-
2942529014
-
Mitogenomic analyses provide new insights into cetacean origin and evolution
-
Árnason Ú., Gulberg A., Janke A. Mitogenomic analyses provide new insights into cetacean origin and evolution. Gene 2004, 333:27-34.
-
(2004)
Gene
, vol.333
, pp. 27-34
-
-
Árnason, Ú.1
Gulberg, A.2
Janke, A.3
-
6
-
-
27844557158
-
Phylogenetic status of the Irrawady dolphin Orcaella brevirostris (Owen in Gray): a cladistic analysis
-
Arnold P.W., Heinsohn G.E. Phylogenetic status of the Irrawady dolphin Orcaella brevirostris (Owen in Gray): a cladistic analysis. Mem. Queensland Mus. 1996, 39:141-204.
-
(1996)
Mem. Queensland Mus.
, vol.39
, pp. 141-204
-
-
Arnold, P.W.1
Heinsohn, G.E.2
-
7
-
-
67349117340
-
Evolution and phylogenetic utility of the melanocortin-1 receptor gene (MC1R) in Cetartiodactyla
-
Ayoub N.A., McGowen M.R., Clark C., Springer M.S., Gatesy J. Evolution and phylogenetic utility of the melanocortin-1 receptor gene (MC1R) in Cetartiodactyla. Mol. Phylogenet. Evol. 2009, 52:550-557.
-
(2009)
Mol. Phylogenet. Evol.
, vol.52
, pp. 550-557
-
-
Ayoub, N.A.1
McGowen, M.R.2
Clark, C.3
Springer, M.S.4
Gatesy, J.5
-
9
-
-
0001992561
-
The fossil record and evolutionary relationships of the genus Tursiops
-
Academic Press, San Diego, S. Leatherwood, R.R. Reeves (Eds.)
-
Barnes L.G. The fossil record and evolutionary relationships of the genus Tursiops. The Bottlenose Dolphin 1990, 3-25. Academic Press, San Diego. S. Leatherwood, R.R. Reeves (Eds.).
-
(1990)
The Bottlenose Dolphin
, pp. 3-25
-
-
Barnes, L.G.1
-
10
-
-
33846839295
-
Concordance trees, concordance factors, and the exploration of reticulate genealogy
-
Baum D. Concordance trees, concordance factors, and the exploration of reticulate genealogy. Taxon 2007, 56:417-426.
-
(2007)
Taxon
, vol.56
, pp. 417-426
-
-
Baum, D.1
-
11
-
-
20744440528
-
Description of a new dolphin, the Australian snubfin dolphin Orcaella heinsohni sp. n. (Cetacea, Delphinidae)
-
Beasley I., Robertson K.M., Arnold P. Description of a new dolphin, the Australian snubfin dolphin Orcaella heinsohni sp. n. (Cetacea, Delphinidae). Mar. Mammal Sci. 2005, 21:365-400.
-
(2005)
Mar. Mammal Sci.
, vol.21
, pp. 365-400
-
-
Beasley, I.1
Robertson, K.M.2
Arnold, P.3
-
12
-
-
0347334407
-
Hybridism
-
Academic Press, San Diego, W. Perrin, B. Würsig, J.G.M. Thewissen (Eds.)
-
Bérubé M. Hybridism. Encyclopedia of Marine Mammals 2002, 596-600. Academic Press, San Diego. first ed. W. Perrin, B. Würsig, J.G.M. Thewissen (Eds.).
-
(2002)
Encyclopedia of Marine Mammals
, pp. 596-600
-
-
Bérubé, M.1
-
13
-
-
38349150505
-
Fast genes and slow clades: comparative rates of molecular evolution in mammals
-
Bininda-Emonds O.R.P. Fast genes and slow clades: comparative rates of molecular evolution in mammals. Evol. Bioinform. 2007, 3:59-85.
-
(2007)
Evol. Bioinform.
, vol.3
, pp. 59-85
-
-
Bininda-Emonds, O.R.P.1
-
14
-
-
9944255059
-
Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards
-
Brandley M., Schmitz A., Reeder T.W. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Syst. Biol. 2005, 54:373-390.
-
(2005)
Syst. Biol.
, vol.54
, pp. 373-390
-
-
Brandley, M.1
Schmitz, A.2
Reeder, T.W.3
-
15
-
-
1642363229
-
Vertebral osteology in Delphinidae (Cetacea)
-
Buchholtz E.A., Schur S.A. Vertebral osteology in Delphinidae (Cetacea). Zool. J. Linn. Soc. 2004, 140:383-401.
-
(2004)
Zool. J. Linn. Soc.
, vol.140
, pp. 383-401
-
-
Buchholtz, E.A.1
Schur, S.A.2
-
16
-
-
37349105379
-
Molecular systematics of South American dolphins Sotalia: sister taxa determination and phylogenetic relationships, with insights into a multi-locus phylogeny of the Delphinidae
-
Caballero S., Jackson J., Mignucci-Giannoni A.A., Barrios-Garrido H., Beltrán-Pedreros S., Montiel-Villalobos M.G., Robertson K.M., Baker C.S. Molecular systematics of South American dolphins Sotalia: sister taxa determination and phylogenetic relationships, with insights into a multi-locus phylogeny of the Delphinidae. Mol. Phylogenet. Evol. 2008, 46:252-268.
-
(2008)
Mol. Phylogenet. Evol.
, vol.46
, pp. 252-268
-
-
Caballero, S.1
Jackson, J.2
Mignucci-Giannoni, A.A.3
Barrios-Garrido, H.4
Beltrán-Pedreros, S.5
Montiel-Villalobos, M.G.6
Robertson, K.M.7
Baker, C.S.8
-
17
-
-
12944281105
-
Independent adaptation to riverine habitats allowed survival of ancient cetacean lineages
-
Cassens I., Vicario S., Waddell V.G., Balchowsky H., Van Belle D., Ding W., Fan C., Mohan R.S.L., Simöes-Lopes P.C., Bastids R., Meyer A., Stanhope M.J., Milinkovitch M.C. Independent adaptation to riverine habitats allowed survival of ancient cetacean lineages. Proc. Nat. Acad. Sci. USA 2000, 97:11343-11347.
-
(2000)
Proc. Nat. Acad. Sci. USA
, vol.97
, pp. 11343-11347
-
-
Cassens, I.1
Vicario, S.2
Waddell, V.G.3
Balchowsky, H.4
Van Belle, D.5
Ding, W.6
Fan, C.7
Mohan, R.S.L.8
Simöes-Lopes, P.C.9
Bastids, R.10
Meyer, A.11
Stanhope, M.J.12
Milinkovitch, M.C.13
-
18
-
-
47749147384
-
Morphological and molecular evidence for a stepwise evolutionary transition from teeth to baleen in mysticete whales
-
Deméré T.A., McGowen M.R., Berta A., Gatesy J. Morphological and molecular evidence for a stepwise evolutionary transition from teeth to baleen in mysticete whales. Syst. Biol. 2008, 57:15-37.
-
(2008)
Syst. Biol.
, vol.57
, pp. 15-37
-
-
Deméré, T.A.1
McGowen, M.R.2
Berta, A.3
Gatesy, J.4
-
19
-
-
0000959825
-
Les relations phylogénétiques des Delphinida (Cetacea, Mammalia)
-
De Muizon C. Les relations phylogénétiques des Delphinida (Cetacea, Mammalia). Ann. Paleontol. 1988, 74:159-227.
-
(1988)
Ann. Paleontol.
, vol.74
, pp. 159-227
-
-
De Muizon, C.1
-
20
-
-
0000349764
-
On the characters and divisions of the family Delphinidae
-
Flower W.H. On the characters and divisions of the family Delphinidae. Proc. Zool. Soc. London 1884, 1884:466-513.
-
(1884)
Proc. Zool. Soc. London
, vol.1884
, pp. 466-513
-
-
Flower, W.H.1
-
21
-
-
0002275211
-
Hearing in cetaceans. Evolution of the accessory air sacs and the structure and function of the outer and middle ear in recent cetaceans
-
Fraser F.C., Purves P.E. Hearing in cetaceans. Evolution of the accessory air sacs and the structure and function of the outer and middle ear in recent cetaceans. Bull. Brit. Mus. Nat. Hist. 1960, 7:1-140.
-
(1960)
Bull. Brit. Mus. Nat. Hist.
, vol.7
, pp. 1-140
-
-
Fraser, F.C.1
Purves, P.E.2
-
22
-
-
3543021552
-
Morphological evidence for the phylogeny of Cetacea
-
Geisler J.H., Sanders A.E. Morphological evidence for the phylogeny of Cetacea. J. Mammal. Evol. 2003, 10:23-129.
-
(2003)
J. Mammal. Evol.
, vol.10
, pp. 23-129
-
-
Geisler, J.H.1
Sanders, A.E.2
-
23
-
-
79955001378
-
A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea
-
Geisler J.H., McGowen M.R., Yang G., Gatesy J. A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea. BMC Evol. Biol. 2011, 11:112.
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 112
-
-
Geisler, J.H.1
McGowen, M.R.2
Yang, G.3
Gatesy, J.4
-
24
-
-
0035819845
-
Evolution of river dolphins
-
Hamilton H., Caballero S., Collins A.G., Brownell R.L. Evolution of river dolphins. Proc. Roy. Soc. B 2001, 268:549-558.
-
(2001)
Proc. Roy. Soc. B
, vol.268
, pp. 549-558
-
-
Hamilton, H.1
Caballero, S.2
Collins, A.G.3
Brownell, R.L.4
-
25
-
-
33750917591
-
Multi-locus phylogeny of dolphins in the subfamily Lissodelphininae: character synergy improves phylogenetic resolution
-
Harlin-Cognato A.D., Honeycutt R.L. Multi-locus phylogeny of dolphins in the subfamily Lissodelphininae: character synergy improves phylogenetic resolution. BMC Evol. Biol. 2006, 6:87.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 87
-
-
Harlin-Cognato, A.D.1
Honeycutt, R.L.2
-
26
-
-
0030821313
-
Sperm whale phylogeny revisited: analysis of the morphological evidence
-
Heyning J.E. Sperm whale phylogeny revisited: analysis of the morphological evidence. Mar. Mammal Sci. 1997, 4:596-613.
-
(1997)
Mar. Mammal Sci.
, vol.4
, pp. 596-613
-
-
Heyning, J.E.1
-
27
-
-
77956087396
-
Improved characterization of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks
-
Ho S.Y.W., Lanfear R. Improved characterization of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks. Mitochondrial DNA 2010, 21:138-146.
-
(2010)
Mitochondrial DNA
, vol.21
, pp. 138-146
-
-
Ho, S.Y.W.1
Lanfear, R.2
-
28
-
-
0028002841
-
Patterns of speciation and limits to phylogenetic resolution
-
Hoelzer G.A., Melnick D.J. Patterns of speciation and limits to phylogenetic resolution. Trends Ecol. Evol. 1994, 9:104-107.
-
(1994)
Trends Ecol. Evol.
, vol.9
, pp. 104-107
-
-
Hoelzer, G.A.1
Melnick, D.J.2
-
29
-
-
0033457132
-
Phylogenetic relationships and tempo of early diversification in Anolis lizards
-
Jackson T.R., Larson A., de Queiroz K., Losos J.B. Phylogenetic relationships and tempo of early diversification in Anolis lizards. Syst. Biol. 1999, 48:254-285.
-
(1999)
Syst. Biol.
, vol.48
, pp. 254-285
-
-
Jackson, T.R.1
Larson, A.2
de Queiroz, K.3
Losos, J.B.4
-
30
-
-
0345534341
-
Rough-toothed dolphin Steno bredanensis
-
Academic Press, New York, W. Perrin, B. Würsig, J.G.M. Thewissen (Eds.)
-
Jefferson T.A. Rough-toothed dolphin Steno bredanensis. Encyclopedia of Marine Mammals 2002, 310-314. Academic Press, New York. W. Perrin, B. Würsig, J.G.M. Thewissen (Eds.).
-
(2002)
Encyclopedia of Marine Mammals
, pp. 310-314
-
-
Jefferson, T.A.1
-
31
-
-
0036775316
-
The taxonomic status of the nominal dolphin species Delphinus tropicalis van Bree, 1971
-
Jefferson T.A., van Waerebeek K. The taxonomic status of the nominal dolphin species Delphinus tropicalis van Bree, 1971. Mar. Mammal Sci. 2002, 18:787-818.
-
(2002)
Mar. Mammal Sci.
, vol.18
, pp. 787-818
-
-
Jefferson, T.A.1
van Waerebeek, K.2
-
34
-
-
79959681692
-
-
Systematic consideration of the recent toothed whales based on the morphology of tympano-periotic bone. Sci. Rep. of the Whales Res. Inst. 25, 1-103 + Plates I-XXVII.
-
Kasuya, T., 1973. Systematic consideration of the recent toothed whales based on the morphology of tympano-periotic bone. Sci. Rep. of the Whales Res. Inst. 25, 1-103 + Plates I-XXVII.
-
(1973)
-
-
Kasuya, T.1
-
35
-
-
70350752529
-
Testing mitochondrial sequences and anonymous nuclear markers for phylogeny reconstruction in a rapidly radiating group: molecular systematics of the Delphininae (Cetacea: Odontoceti: Delphinidae)
-
Kingston S.E., Adams L.D., Rosel P.E. Testing mitochondrial sequences and anonymous nuclear markers for phylogeny reconstruction in a rapidly radiating group: molecular systematics of the Delphininae (Cetacea: Odontoceti: Delphinidae). BMC Evol. Biol. 2009, 9:245.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 245
-
-
Kingston, S.E.1
Adams, L.D.2
Rosel, P.E.3
-
36
-
-
77954409685
-
Phylogenetic analyses in cetacean species of the family Delphinidae using a short wavelength sensitive opsin gene sequence
-
Koito T., Kubokawa K., Tanabe S., Miyazaki N. Phylogenetic analyses in cetacean species of the family Delphinidae using a short wavelength sensitive opsin gene sequence. Fish. Sci. 2010, 76:571-576.
-
(2010)
Fish. Sci.
, vol.76
, pp. 571-576
-
-
Koito, T.1
Kubokawa, K.2
Tanabe, S.3
Miyazaki, N.4
-
37
-
-
77952688938
-
Echolocation in sympatric Peale's dolphins (Lagenorhynchus australis) and Commerson's dolphins (Cephalorhynchus commersonii) producing narrow-band high-frequency clicks
-
Kyhn L.A., Jensen F.H., Beedholm K., Tougaard J., Hansen M., Madsen P.T. Echolocation in sympatric Peale's dolphins (Lagenorhynchus australis) and Commerson's dolphins (Cephalorhynchus commersonii) producing narrow-band high-frequency clicks. J. Exp. Biol. 2010, 213:1940-1949.
-
(2010)
J. Exp. Biol.
, vol.213
, pp. 1940-1949
-
-
Kyhn, L.A.1
Jensen, F.H.2
Beedholm, K.3
Tougaard, J.4
Hansen, M.5
Madsen, P.T.6
-
38
-
-
84884822350
-
Delphinids, overview
-
Academic Press, San Diego, W. Perrin, B. Würsig, J.G.M. Thewissen (Eds.)
-
LeDuc R.G. Delphinids, overview. Encyclopedia of Marine Mammals 2009, 310-314. Academic Press, San Diego. second ed. W. Perrin, B. Würsig, J.G.M. Thewissen (Eds.).
-
(2009)
Encyclopedia of Marine Mammals
, pp. 310-314
-
-
LeDuc, R.G.1
-
39
-
-
0033020544
-
Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences
-
LeDuc R.G., Perrin W.F., Dizon A.E. Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences. Mar. Mammal Sci. 1999, 15:619-648.
-
(1999)
Mar. Mammal Sci.
, vol.15
, pp. 619-648
-
-
LeDuc, R.G.1
Perrin, W.F.2
Dizon, A.E.3
-
40
-
-
0031504952
-
Gene trees in species trees
-
Maddison W.P. Gene trees in species trees. Syst. Biol. 1997, 46:523-536.
-
(1997)
Syst. Biol.
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
41
-
-
10044254327
-
The origin and evolution of large brains in toothed whales
-
Marino L., McShea D., Uhen M.D. The origin and evolution of large brains in toothed whales. Anat. Rec. 2004, 281A:1247-1255.
-
(2004)
Anat. Rec.
, vol.281 A
, pp. 1247-1255
-
-
Marino, L.1
McShea, D.2
Uhen, M.D.3
-
42
-
-
30344477383
-
Cytochrome b and Bayesian inference of whale phylogeny
-
May-Collado L.J., Agnarsson I. Cytochrome b and Bayesian inference of whale phylogeny. Mol. Phylogenet. Evol. 2006, 38:344-354.
-
(2006)
Mol. Phylogenet. Evol.
, vol.38
, pp. 344-354
-
-
May-Collado, L.J.1
Agnarsson, I.2
-
43
-
-
56549101000
-
The vestigial olfactory receptor subgenome of odontocete whales: phylogenetic congruence between gene-tree reconciliation and supermatrix methods
-
McGowen M.R., Clark C., Gatesy J. The vestigial olfactory receptor subgenome of odontocete whales: phylogenetic congruence between gene-tree reconciliation and supermatrix methods. Syst. Biol. 2008, 57:574-590.
-
(2008)
Syst. Biol.
, vol.57
, pp. 574-590
-
-
McGowen, M.R.1
Clark, C.2
Gatesy, J.3
-
44
-
-
79953908374
-
Phylogeny and adaptive evolution of the brain-development gene microcephalin (MCPH1) in cetaceans
-
McGowen M.R., Montgomery S.H., Clark C., Gatesy J. Phylogeny and adaptive evolution of the brain-development gene microcephalin (MCPH1) in cetaceans. BMC Evol. Biol. 2011, 11:98.
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 98
-
-
McGowen, M.R.1
Montgomery, S.H.2
Clark, C.3
Gatesy, J.4
-
45
-
-
70349665848
-
Divergence date estimation and a comprehensive molecular tree of extant cetaceans
-
McGowen M.R., Spaulding M., Gatesy J. Divergence date estimation and a comprehensive molecular tree of extant cetaceans. Mol. Phylogenet. Evol. 2009, 53:891-906.
-
(2009)
Mol. Phylogenet. Evol.
, vol.53
, pp. 891-906
-
-
McGowen, M.R.1
Spaulding, M.2
Gatesy, J.3
-
46
-
-
38449093214
-
Phylogenetic systematics and biogeography of hummingbirds: bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy
-
McGuire J.A., Witt C.C., Altshuler D.L., Remsen J.V. Phylogenetic systematics and biogeography of hummingbirds: bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Syst. Biol. 2007, 56:837-856.
-
(2007)
Syst. Biol.
, vol.56
, pp. 837-856
-
-
McGuire, J.A.1
Witt, C.C.2
Altshuler, D.L.3
Remsen, J.V.4
-
47
-
-
0001845472
-
Anatomy of the external nasal passages and facial complex in the Delphinidae (Mammalia: Cetacea)
-
Mead J.G. Anatomy of the external nasal passages and facial complex in the Delphinidae (Mammalia: Cetacea). Smithsonian Contrib. 1975, 207:1-72.
-
(1975)
Smithsonian Contrib.
, vol.207
, pp. 1-72
-
-
Mead, J.G.1
-
48
-
-
0032023879
-
Morphology, molecules, and the phylogenetics of cetaceans
-
Messenger S.L., McGuire J.A. Morphology, molecules, and the phylogenetics of cetaceans. Syst. Biol. 1998, 47:90-124.
-
(1998)
Syst. Biol.
, vol.47
, pp. 90-124
-
-
Messenger, S.L.1
McGuire, J.A.2
-
49
-
-
0027466080
-
Revised phylogeny of whales suggested by mitochondrial ribosomal DNA sequences
-
Milinkovitch M.C., Orti G., Meyer A. Revised phylogeny of whales suggested by mitochondrial ribosomal DNA sequences. Nature 1993, 361:346-348.
-
(1993)
Nature
, vol.361
, pp. 346-348
-
-
Milinkovitch, M.C.1
Orti, G.2
Meyer, A.3
-
50
-
-
0013032437
-
Pigmentation pattern evolution in delphinid cetaceans: an essay in adaptive coloration
-
Mitchell E. Pigmentation pattern evolution in delphinid cetaceans: an essay in adaptive coloration. Can. J. Zool. 1970, 48:717-740.
-
(1970)
Can. J. Zool.
, vol.48
, pp. 717-740
-
-
Mitchell, E.1
-
51
-
-
77954236362
-
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
-
Morin P.A., Archer F.I., Foote A.D., Vilstrup J., Allen E.E., Wade P., Durban J., Parsons K., Pitman R., Li L., Bouffard P., Abel Nielsen S.C., Rasmussen M., Willerslev E., Gilbert M.T.P., Harkins T. Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res. 2010, 20:908-916.
-
(2010)
Genome Res.
, vol.20
, pp. 908-916
-
-
Morin, P.A.1
Archer, F.I.2
Foote, A.D.3
Vilstrup, J.4
Allen, E.E.5
Wade, P.6
Durban, J.7
Parsons, K.8
Pitman, R.9
Li, L.10
Bouffard, P.11
Abel Nielsen, S.C.12
Rasmussen, M.13
Willerslev, E.14
Gilbert, M.T.P.15
Harkins, T.16
-
52
-
-
22944482184
-
SeqState - primer design and sequence statistics for phylogenetic DNA data sets
-
Müller K. SeqState - primer design and sequence statistics for phylogenetic DNA data sets. Appl. Bioinformat. 2005, 4:65-69.
-
(2005)
Appl. Bioinformat.
, vol.4
, pp. 65-69
-
-
Müller, K.1
-
53
-
-
38349192060
-
Strong variation of mitochondrial mutation rate across mammals: the longevity hypothesis
-
Nabholtz B., Glemin S., Galtier N. Strong variation of mitochondrial mutation rate across mammals: the longevity hypothesis. Mol. Biol. Evol. 2008, 25:120-130.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 120-130
-
-
Nabholtz, B.1
Glemin, S.2
Galtier, N.3
-
54
-
-
33646483687
-
Phylogeography and alpha taxonomy of the common dolphin (Delphinus sp.)
-
Natoli A., Cañadas A., Peddemors V.M., Aguilar A., Vaquero C., Fernández-Piqueras P., Hoelzel A.R. Phylogeography and alpha taxonomy of the common dolphin (Delphinus sp.). J. Evol. Biol. 2006, 19:943-954.
-
(2006)
J. Evol. Biol.
, vol.19
, pp. 943-954
-
-
Natoli, A.1
Cañadas, A.2
Peddemors, V.M.3
Aguilar, A.4
Vaquero, C.5
Fernández-Piqueras, P.6
Hoelzel, A.R.7
-
55
-
-
0003078723
-
Approximate Bayesian inference with the weighted likelihood bootstrap
-
Newton M.A., Raftery A.E. Approximate Bayesian inference with the weighted likelihood bootstrap. J. Roy. Stat. Soc. B 1994, 56:3-48.
-
(1994)
J. Roy. Stat. Soc. B
, vol.56
, pp. 3-48
-
-
Newton, M.A.1
Raftery, A.E.2
-
56
-
-
0035912816
-
Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins
-
Nikaido M., Matsuno F., Hamilton H., Brownell R.L., Cao Y., Ding W., Zuoyan Z., Shedlock A.M., Fordyce R.E., Hasegawa M., Okada N. Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins. Proc. Nat. Acad. Sci. USA 2001, 98:7384-7389.
-
(2001)
Proc. Nat. Acad. Sci. USA
, vol.98
, pp. 7384-7389
-
-
Nikaido, M.1
Matsuno, F.2
Hamilton, H.3
Brownell, R.L.4
Cao, Y.5
Ding, W.6
Zuoyan, Z.7
Shedlock, A.M.8
Fordyce, R.E.9
Hasegawa, M.10
Okada, N.11
-
57
-
-
34548637663
-
Phylogenetic relationships among cetaceans revealed by Y-chromosome sequences
-
Nishida S., Goto M., Pastene L.A., Kanda N., Koike H. Phylogenetic relationships among cetaceans revealed by Y-chromosome sequences. Zool. Sci. 2007, 24:723-732.
-
(2007)
Zool. Sci.
, vol.24
, pp. 723-732
-
-
Nishida, S.1
Goto, M.2
Pastene, L.A.3
Kanda, N.4
Koike, H.5
-
59
-
-
34547240064
-
Sequence variation in the Tbx4 gene in marine mammals
-
Onbe K., Nishida S., Sone E., Kanda N., Goto M., Pastene L.A., Tanabe S., Koike H. Sequence variation in the Tbx4 gene in marine mammals. Zool. Sci. 2007, 24:449-464.
-
(2007)
Zool. Sci.
, vol.24
, pp. 449-464
-
-
Onbe, K.1
Nishida, S.2
Sone, E.3
Kanda, N.4
Goto, M.5
Pastene, L.A.6
Tanabe, S.7
Koike, H.8
-
60
-
-
0003879482
-
-
IUCN, Gland, Switzerland
-
Perrin W.F. Dolphins, Porpoises, and Whales. An Action Plan for the Conservation of Biological Diversity: 1988-1992, second ed 1989, IUCN, Gland, Switzerland.
-
(1989)
Dolphins, Porpoises, and Whales. An Action Plan for the Conservation of Biological Diversity: 1988-1992, second ed
-
-
Perrin, W.F.1
-
61
-
-
0031048187
-
Development and homologies of head stripes in the delphinoid cetaceans
-
Perrin W.F. Development and homologies of head stripes in the delphinoid cetaceans. Mar. Mammal Sci. 1997, 13:1-43.
-
(1997)
Mar. Mammal Sci.
, vol.13
, pp. 1-43
-
-
Perrin, W.F.1
-
62
-
-
0034803054
-
Origin and radiation of Southern Hemisphere coastal dolphins (genus Cephalorhynchus)
-
Pichler F.B., Robineau D., Goodall R.N.P., Meÿer M.A., Olivarría C., Baker C.S. Origin and radiation of Southern Hemisphere coastal dolphins (genus Cephalorhynchus). Mol. Ecol. 2001, 10:2215-2223.
-
(2001)
Mol. Ecol.
, vol.10
, pp. 2215-2223
-
-
Pichler, F.B.1
Robineau, D.2
Goodall, R.N.P.3
Meÿer, M.A.4
Olivarría, C.5
Baker, C.S.6
-
63
-
-
9644301241
-
Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests
-
Posada D., Buckley T.R. Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 2004, 53:793-808.
-
(2004)
Syst. Biol.
, vol.53
, pp. 793-808
-
-
Posada, D.1
Buckley, T.R.2
-
64
-
-
84855674119
-
-
Tracer v1.4. Distributed by the authors. .
-
Rambaut A., Drummond, A.J., 2007. Tracer v1.4. Distributed by the authors. http://beast.bio.ed.ac.uk/Trace.
-
(2007)
-
-
Rambaut, A.1
Drummond, A.J.2
-
65
-
-
0041386108
-
MRBAYES 3: bayesian phylogenetic inference under mixed models
-
Ronquist F., Huelsenbeck J.P. MRBAYES 3: bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
66
-
-
84855691393
-
-
MrBayes 3.1 Manual Draft 5/26/2005. Distributed by the authors. .
-
Ronquist, F., Huelsenbeck, J.P., van der Mark, P., 2005. MrBayes 3.1 Manual Draft 5/26/2005. Distributed by the authors. http://mrbayes.csit.fsu.edu/manual.php.
-
(2005)
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
van der Mark, P.3
-
67
-
-
0034350427
-
Gaps as characters in sequence-based phylogenetic analyses
-
Simmons M.P., Ochoterena H. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 2000, 49:369-381.
-
(2000)
Syst. Biol.
, vol.49
, pp. 369-381
-
-
Simmons, M.P.1
Ochoterena, H.2
-
68
-
-
77956945312
-
Diversity versus disparity and the radiation of modern cetaceans
-
Slater G.J., Price S.A., Santini F., Alfaro M.E. Diversity versus disparity and the radiation of modern cetaceans. Proc. Roy. Soc. B 2010, 277:3097-3104.
-
(2010)
Proc. Roy. Soc. B
, vol.277
, pp. 3097-3104
-
-
Slater, G.J.1
Price, S.A.2
Santini, F.3
Alfaro, M.E.4
-
69
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
70
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web servers
-
Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 57:758-771.
-
(2008)
Syst. Biol.
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
71
-
-
72949086467
-
Radiation of extant cetaceans driven by restructuring of the oceans
-
Steeman M.E., Hebsgaard M.B., Fordyce R.E., Ho S.Y.W., Rabosky D.L., Nielsen R., Rahbek C., Glenner H., Sørenson M.V., Willerslev E. Radiation of extant cetaceans driven by restructuring of the oceans. Syst. Biol. 2009, 58:573-585.
-
(2009)
Syst. Biol.
, vol.58
, pp. 573-585
-
-
Steeman, M.E.1
Hebsgaard, M.B.2
Fordyce, R.E.3
Ho, S.Y.W.4
Rabosky, D.L.5
Nielsen, R.6
Rahbek, C.7
Glenner, H.8
Sørenson, M.V.9
Willerslev, E.10
-
72
-
-
0034983646
-
Bayesian selection of continuous-time Markov chain evolutionary models
-
Suchard M.A., Weiss R.E., Sinsheimer J.S. Bayesian selection of continuous-time Markov chain evolutionary models. Mol. Biol. Evol. 2001, 18:1001-1013.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1001-1013
-
-
Suchard, M.A.1
Weiss, R.E.2
Sinsheimer, J.S.3
-
73
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
74
-
-
73349142017
-
Echolocation sounds of hourglass dolphins (Lagenorhynchus cruciger) are similar to the narrow band high-frequency echolocation sounds of the dolphin genus Cephalorhynchus
-
Tougaard J., Kyhn L.A. Echolocation sounds of hourglass dolphins (Lagenorhynchus cruciger) are similar to the narrow band high-frequency echolocation sounds of the dolphin genus Cephalorhynchus. Mar. Mammal Sci. 2010, 26:239-245.
-
(2010)
Mar. Mammal Sci.
, vol.26
, pp. 239-245
-
-
Tougaard, J.1
Kyhn, L.A.2
-
75
-
-
0005129482
-
Contributions to the natural history of the cetaceans, a review of the family Delphinidae
-
True F.W. Contributions to the natural history of the cetaceans, a review of the family Delphinidae. Bull. US Nat. Mus. 1889, 36:1-191.
-
(1889)
Bull. US Nat. Mus.
, vol.36
, pp. 1-191
-
-
True, F.W.1
-
76
-
-
0034036223
-
Molecular phylogenetic examination of the Delphinoidea trichotomy: Congruent evidence from three nuclear loci indicates that porpoises (Phocoenidae) share a more recent common ancestry with white whales (Monodontidae) than they do with true dolphins (Delphinidae)
-
Waddell V.G., Milinkovitch M.C., Bérubé M., Stanhope M.J. Molecular phylogenetic examination of the Delphinoidea trichotomy: Congruent evidence from three nuclear loci indicates that porpoises (Phocoenidae) share a more recent common ancestry with white whales (Monodontidae) than they do with true dolphins (Delphinidae). Mol. Phylogenet. Evol. 2000, 15:314-318.
-
(2000)
Mol. Phylogenet. Evol.
, vol.15
, pp. 314-318
-
-
Waddell, V.G.1
Milinkovitch, M.C.2
Bérubé, M.3
Stanhope, M.J.4
-
78
-
-
62449092560
-
Seven new mitochondrial genomes and a time-calibrated phylogeny of whales
-
Xiong Y., Brandley M.C., Xu S., Zhou K., Yang G. Seven new mitochondrial genomes and a time-calibrated phylogeny of whales. BMC Evol. Biol. 2009, 9:20.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 20
-
-
Xiong, Y.1
Brandley, M.C.2
Xu, S.3
Zhou, K.4
Yang, G.5
|