-
1
-
-
84889373612
-
Inference Under the Coalescent
-
Chichester, UK: John Wiley & Sons, Ltd, Balding DJ, Bishop M, Cannings C, Third
-
Stephens M. Inference Under the Coalescent. Handbook of Statistical Genetics 2008, 878-908. Chichester, UK: John Wiley & Sons, Ltd, Balding DJ, Bishop M, Cannings C, Third.
-
(2008)
Handbook of Statistical Genetics
, pp. 878-908
-
-
Stephens, M.1
-
2
-
-
1842532350
-
The Bayesian revolution in genetics
-
Beaumont MA, Rannala B. The Bayesian revolution in genetics. Nat Rev Genet 2004, 5:251-261.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 251-261
-
-
Beaumont, M.A.1
Rannala, B.2
-
3
-
-
0346734143
-
Markov chain Monte Carlo without likelihoods
-
10.1073/pnas.0306899100, 307566, 14663152
-
Marjoram P, Molitor J, Plagnol V, Tavaré S. Markov chain Monte Carlo without likelihoods. Proc Natl Acad Sci USA 2003, 100:15324-15328. 10.1073/pnas.0306899100, 307566, 14663152.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 15324-15328
-
-
Marjoram, P.1
Molitor, J.2
Plagnol, V.3
Tavaré, S.4
-
4
-
-
77954816556
-
Approximate Bayesian Computation (ABC) in practice
-
10.1016/j.tree.2010.04.001, 20488578
-
Csilléry K, Blum MG, Gaggiotti OE, François O. Approximate Bayesian Computation (ABC) in practice. Trends Ecol Evol 2010, 25:410-418. 10.1016/j.tree.2010.04.001, 20488578.
-
(2010)
Trends Ecol Evol
, vol.25
, pp. 410-418
-
-
Csilléry, K.1
Blum, M.G.2
Gaggiotti, O.E.3
François, O.4
-
5
-
-
0031014291
-
Inferring Coalescence Times From DNA Sequence Data
-
1207814, 9071603
-
Tavare S, Balding DJ, Griffiths RC, Donnelly P. Inferring Coalescence Times From DNA Sequence Data. Genetics 1997, 145:505-518. 1207814, 9071603.
-
(1997)
Genetics
, vol.145
, pp. 505-518
-
-
Tavare, S.1
Balding, D.J.2
Griffiths, R.C.3
Donnelly, P.4
-
6
-
-
0032735986
-
Population growth of human Y chromosomes: a study of Y chromosome microsatellites
-
10.1093/oxfordjournals.molbev.a026091, 10605120
-
Pritchard JK, Seielstad MT, Perez-Lezaun A, Feldman MW. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol Biol Evol 1999, 16:1791-1798. 10.1093/oxfordjournals.molbev.a026091, 10605120.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1791-1798
-
-
Pritchard, J.K.1
Seielstad, M.T.2
Perez-Lezaun, A.3
Feldman, M.W.4
-
7
-
-
0036964474
-
Approximate Bayesian Computation in Population Genetics
-
1462356, 12524368
-
Beaumont MA, Zhang W, Balding DJ. Approximate Bayesian Computation in Population Genetics. Genetics 2002, 162:2025-2035. 1462356, 12524368.
-
(2002)
Genetics
, vol.162
, pp. 2025-2035
-
-
Beaumont, M.A.1
Zhang, W.2
Balding, D.J.3
-
8
-
-
73549122582
-
Non-linear regression models for Approximate Bayesian Computation
-
Blum M, François O. Non-linear regression models for Approximate Bayesian Computation. Stat Comput 2010, 20:63-73.
-
(2010)
Stat Comput
, vol.20
, pp. 63-73
-
-
Blum, M.1
François, O.2
-
9
-
-
33846939958
-
Sequential Monte Carlo without likelihoods
-
10.1073/pnas.0607208104, 1794282, 17264216
-
Sisson SA, Fan Y, Tanaka MM. Sequential Monte Carlo without likelihoods. Proc Natl Acad Sci 2007, 104:1760-1765. 10.1073/pnas.0607208104, 1794282, 17264216.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 1760-1765
-
-
Sisson, S.A.1
Fan, Y.2
Tanaka, M.M.3
-
10
-
-
0034967295
-
Distinguishing Migration From Isolation: a Markov Chain Monte Carlo Approach
-
1461674, 11404349
-
Nielsen R, Wakeley J. Distinguishing Migration From Isolation: a Markov Chain Monte Carlo Approach. Genetics 2001, 158:885-896. 1461674, 11404349.
-
(2001)
Genetics
, vol.158
, pp. 885-896
-
-
Nielsen, R.1
Wakeley, J.2
-
11
-
-
0001486658
-
The relationship between coalescence times and population divergence times
-
Oxford: Oxford University Press, Slatkin M, Veuille M
-
Rosenberg NA, Feldman MW. The relationship between coalescence times and population divergence times. Modern Developments in Theoretical Population Genetics 2002, 130-164. Oxford: Oxford University Press, Slatkin M, Veuille M.
-
(2002)
Modern Developments in Theoretical Population Genetics
, pp. 130-164
-
-
Rosenberg, N.A.1
Feldman, M.W.2
-
12
-
-
0042697667
-
The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model
-
Rosenberg NA. The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution 2003, 57:1465-1477.
-
(2003)
Evolution
, vol.57
, pp. 1465-1477
-
-
Rosenberg, N.A.1
-
13
-
-
3142714474
-
Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis
-
10.1534/genetics.103.024182, 1470901, 15238526
-
Hey J, Nielsen R. Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis. Genetics 2004, 167:747-760. 10.1534/genetics.103.024182, 1470901, 15238526.
-
(2004)
Genetics
, vol.167
, pp. 747-760
-
-
Hey, J.1
Nielsen, R.2
-
14
-
-
22744459171
-
On the Number of New World Founders: A Population Genetic Portrait of the Peopling of the Americas
-
Hey J. On the Number of New World Founders: A Population Genetic Portrait of the Peopling of the Americas. PLoSBiol 2005, 3:e193.
-
(2005)
PLoSBiol
, vol.3
-
-
Hey, J.1
-
15
-
-
33646890870
-
A Unique Recent Origin of the Allotetraploid Species Arabidopsis suecica: evidence from Nuclear DNA Markers
-
10.1093/molbev/msk006, 16549398
-
Jakobsson M, Hagenblad J, Tavaré S, Säll T, Halldén C, Lind-Halldén C, Nordborg M. A Unique Recent Origin of the Allotetraploid Species Arabidopsis suecica: evidence from Nuclear DNA Markers. Mol Biol Evol 2006, 23:1217-1231. 10.1093/molbev/msk006, 16549398.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1217-1231
-
-
Jakobsson, M.1
Hagenblad, J.2
Tavaré, S.3
Säll, T.4
Halldén, C.5
Lind-Halldén, C.6
Nordborg, M.7
-
16
-
-
34247872940
-
The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species
-
10.1016/j.tpb.2007.01.004, 17383701
-
Jakobsson M, Rosenberg NA. The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species. Theor Popul Biol 2007, 71:502-523. 10.1016/j.tpb.2007.01.004, 17383701.
-
(2007)
Theor Popul Biol
, vol.71
, pp. 502-523
-
-
Jakobsson, M.1
Rosenberg, N.A.2
-
17
-
-
34948847222
-
A new approach to estimate parameters of speciation models with application to apes
-
10.1101/gr.6409707, 1987350, 17712021
-
Becquet C, Przeworski M. A new approach to estimate parameters of speciation models with application to apes. Genome Res 2007, 17:1505-1519. 10.1101/gr.6409707, 1987350, 17712021.
-
(2007)
Genome Res
, vol.17
, pp. 1505-1519
-
-
Becquet, C.1
Przeworski, M.2
-
18
-
-
77952294620
-
Isolation with Migration Models for More Than Two Populations
-
10.1093/molbev/msp296, 2877539, 19955477
-
Hey J. Isolation with Migration Models for More Than Two Populations. Mol Biol Evol 2010, 27:905-920. 10.1093/molbev/msp296, 2877539, 19955477.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 905-920
-
-
Hey, J.1
-
19
-
-
36749047447
-
Statistical evaluation of alternative models of human evolution
-
10.1073/pnas.0708280104, 2077041, 17978179
-
Fagundes NJR, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL, Excoffier L. Statistical evaluation of alternative models of human evolution. Proc Natl Acad Sci 2007, 104:17614-17619. 10.1073/pnas.0708280104, 2077041, 17978179.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 17614-17619
-
-
Fagundes, N.J.R.1
Ray, N.2
Beaumont, M.3
Neuenschwander, S.4
Salzano, F.M.5
Bonatto, S.L.6
Excoffier, L.7
-
20
-
-
70350136774
-
Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood
-
10.1534/genetics.109.102509, 2728860, 19506307
-
Wegmann D, Leuenberger C, Excoffier L. Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood. Genetics 2009, 182:1207-1218. 10.1534/genetics.109.102509, 2728860, 19506307.
-
(2009)
Genetics
, vol.182
, pp. 1207-1218
-
-
Wegmann, D.1
Leuenberger, C.2
Excoffier, L.3
-
21
-
-
77954247262
-
ABC as a flexible framework to estimate demography over space and time: some cons, many pros
-
10.1111/j.1365-294X.2010.04690.x, 20561199
-
Bertorelle G, Benazzo A, Mona S. ABC as a flexible framework to estimate demography over space and time: some cons, many pros. Mol Ecol 2010, 19:2609-2625. 10.1111/j.1365-294X.2010.04690.x, 20561199.
-
(2010)
Mol Ecol
, vol.19
, pp. 2609-2625
-
-
Bertorelle, G.1
Benazzo, A.2
Mona, S.3
-
22
-
-
77956331627
-
Integrating common and rare genetic variation in diverse human populations
-
10.1038/nature09298, 3173859, 20811451, The International HapMap 3 Consortium
-
The International HapMap 3 Consortium Integrating common and rare genetic variation in diverse human populations. Nature 2010, 467:52-58. 10.1038/nature09298, 3173859, 20811451, The International HapMap 3 Consortium.
-
(2010)
Nature
, vol.467
, pp. 52-58
-
-
-
23
-
-
39749197456
-
Genotype, haplotype and copy-number variation in worldwide human populations
-
10.1038/nature06742, 18288195
-
Jakobsson M, Scholz SW, Scheet P, Gibbs JR, VanLiere JM, Fung H, Szpiech ZA, Degnan JH, Wang K, Guerreiro R, Bras JM, Schymick JC, Hernandez DG, Traynor BJ, Simon-Sanchez J, Matarin M, Britton A, van de Leemput J, Rafferty I, Bucan M, Cann HM, Hardy JA, Rosenberg NA, Singleton AB. Genotype, haplotype and copy-number variation in worldwide human populations. Nature 2008, 451:998-1003. 10.1038/nature06742, 18288195.
-
(2008)
Nature
, vol.451
, pp. 998-1003
-
-
Jakobsson, M.1
Scholz, S.W.2
Scheet, P.3
Gibbs, J.R.4
VanLiere, J.M.5
Fung, H.6
Szpiech, Z.A.7
Degnan, J.H.8
Wang, K.9
Guerreiro, R.10
Bras, J.M.11
Schymick, J.C.12
Hernandez, D.G.13
Traynor, B.J.14
Simon-Sanchez, J.15
Matarin, M.16
Britton, A.17
van de Leemput, J.18
Rafferty, I.19
Bucan, M.20
Cann, H.M.21
Hardy, J.A.22
Rosenberg, N.A.23
Singleton, A.B.24
more..
-
24
-
-
39749181521
-
Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
-
10.1126/science.1153717, 18292342
-
Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, Ramachandran S, Cann HM, Barsh GS, Feldman M, Cavalli-Sforza LL, Myers RM. Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation. Science 2008, 319:1100-1104. 10.1126/science.1153717, 18292342.
-
(2008)
Science
, vol.319
, pp. 1100-1104
-
-
Li, J.Z.1
Absher, D.M.2
Tang, H.3
Southwick, A.M.4
Casto, A.M.5
Ramachandran, S.6
Cann, H.M.7
Barsh, G.S.8
Feldman, M.9
Cavalli-Sforza, L.L.10
Myers, R.M.11
-
25
-
-
55549115654
-
Genes mirror geography within Europe
-
10.1038/nature07331, 2735096, 18758442
-
Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, Indap A, King KS, Bergmann S, Nelson MR, Stephens M, Bustamante CD. Genes mirror geography within Europe. Nature 2008, 456:98-101. 10.1038/nature07331, 2735096, 18758442.
-
(2008)
Nature
, vol.456
, pp. 98-101
-
-
Novembre, J.1
Johnson, T.2
Bryc, K.3
Kutalik, Z.4
Boyko, A.R.5
Auton, A.6
Indap, A.7
King, K.S.8
Bergmann, S.9
Nelson, M.R.10
Stephens, M.11
Bustamante, C.D.12
-
26
-
-
70349472875
-
Reconstructing Indian population history
-
10.1038/nature08365, 2842210, 19779445
-
Reich D, Thangaraj K, Patterson N, Price AL, Singh L. Reconstructing Indian population history. Nature 2009, 461:489-494. 10.1038/nature08365, 2842210, 19779445.
-
(2009)
Nature
, vol.461
, pp. 489-494
-
-
Reich, D.1
Thangaraj, K.2
Patterson, N.3
Price, A.L.4
Singh, L.5
-
27
-
-
78649323237
-
Demographic History of Oceania Inferred from Genome-wide Data
-
10.1016/j.cub.2010.10.040, 21074440
-
Wollstein A, Lao O, Becker C, Brauer S, Trent RJ, Nürnberg P, Stoneking M, Kayser M. Demographic History of Oceania Inferred from Genome-wide Data. Curr Biol 2010, 20:1983-1992. 10.1016/j.cub.2010.10.040, 21074440.
-
(2010)
Curr Biol
, vol.20
, pp. 1983-1992
-
-
Wollstein, A.1
Lao, O.2
Becker, C.3
Brauer, S.4
Trent, R.J.5
Nürnberg, P.6
Stoneking, M.7
Kayser, M.8
-
28
-
-
78650725611
-
MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity
-
3031198, 21199577
-
Huang W, Takebayashi N, Qi Y, Hickerson M. MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity. BMC Bioinformatics 2011, 12:1. 3031198, 21199577.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 1
-
-
Huang, W.1
Takebayashi, N.2
Qi, Y.3
Hickerson, M.4
-
29
-
-
58149282899
-
Joint determination of topology, divergence time and immigration in population trees
-
Cambridge, UK: McDonald Institute for Archaeological Research, Matsumura S, Forster P, Renfrew C
-
Beaumont MA. Joint determination of topology, divergence time and immigration in population trees. Simulations, Genetics and Human Prehistory 2008, 135-154. Cambridge, UK: McDonald Institute for Archaeological Research, Matsumura S, Forster P, Renfrew C.
-
(2008)
Simulations, Genetics and Human Prehistory
, pp. 135-154
-
-
Beaumont, M.A.1
-
30
-
-
77956219298
-
Approximate Bayesian Computation: A Nonparametric Perspective
-
Blum MGB. Approximate Bayesian Computation: A Nonparametric Perspective. J Am Stat Assoc 2011, 105:1178-1187.
-
(2011)
J Am Stat Assoc
, vol.105
, pp. 1178-1187
-
-
Blum, M.G.B.1
-
31
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
10.1093/bioinformatics/18.2.337, 11847089
-
Hudson RR. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 2002, 18:337-338. 10.1093/bioinformatics/18.2.337, 11847089.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
32
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
10.1038/nature09534, 3042601, 20981092, The 1000 Genomes Project Consortium
-
The 1000 Genomes Project Consortium A map of human genome variation from population-scale sequencing. Nature 2010, 467:1061-1073. 10.1038/nature09534, 3042601, 20981092, The 1000 Genomes Project Consortium.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
33
-
-
19644371954
-
Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations
-
10.1073/pnas.0409253102, 1140411, 15894624
-
Hamilton G, Stoneking M, Excoffier L. Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proc Natl Acad Sci 2005, 102:7476-7480. 10.1073/pnas.0409253102, 1140411, 15894624.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 7476-7480
-
-
Hamilton, G.1
Stoneking, M.2
Excoffier, L.3
-
34
-
-
33750444621
-
A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
-
10.1038/ng1911, 17057719
-
Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat Genet 2006, 38:1251-1260. 10.1038/ng1911, 17057719.
-
(2006)
Nat Genet
, vol.38
, pp. 1251-1260
-
-
Conrad, D.F.1
Jakobsson, M.2
Coop, G.3
Wen, X.4
Wall, J.D.5
Rosenberg, N.A.6
Pritchard, J.K.7
-
35
-
-
33646226097
-
Linkage disequilibrium in finite populations
-
Hill WG, Robertson A. Linkage disequilibrium in finite populations. Theor Appl Genet 1968, 38:226-231.
-
(1968)
Theor Appl Genet
, vol.38
, pp. 226-231
-
-
Hill, W.G.1
Robertson, A.2
-
36
-
-
0024313579
-
Statistical Method for Testing the Neutral Mutation Hypothesis by DNA Polymorphism
-
1203831, 2513255
-
Tajima F. Statistical Method for Testing the Neutral Mutation Hypothesis by DNA Polymorphism. Genetics 1989, 123:585-595. 1203831, 2513255.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
37
-
-
0003752712
-
-
Sunderland, MA, USA: Sinauer Associates, Inc.
-
Weir BS. Genetic Data Analysis II 1996, 174. Sunderland, MA, USA: Sinauer Associates, Inc..
-
(1996)
Genetic Data Analysis II
, pp. 174
-
-
Weir, B.S.1
-
38
-
-
84950968334
-
Least Median of Squares Regression
-
Rousseeuw PJ. Least Median of Squares Regression. J Am Stat Assoc 1984, 79:871-880.
-
(1984)
J Am Stat Assoc
, vol.79
, pp. 871-880
-
-
Rousseeuw, P.J.1
-
39
-
-
78751540480
-
Deep Divergences of Human Gene Trees and Models of Human Origins
-
10.1093/molbev/msq265, 20930054
-
Blum MGB, Jakobsson M. Deep Divergences of Human Gene Trees and Models of Human Origins. Mol Biol Evol 2011, 28:889-898. 10.1093/molbev/msq265, 20930054.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 889-898
-
-
Blum, M.G.B.1
Jakobsson, M.2
|