-
2
-
-
33747034202
-
African cichlid fish: A model system in adaptive radiation research
-
Seehausen, O. African cichlid fish: a model system in adaptive radiation research. Proc. R. Soc. B 273, 1987-1998 (2006).
-
(2006)
Proc. R. Soc. B
, vol.273
, pp. 1987-1998
-
-
Seehausen, O.1
-
6
-
-
26944437127
-
Comparative landscape genetics and the adaptive radiation of Darwin's finches: The role of peripheral isolation
-
Petren, K., Grant, P. R., Grant, B. R. & Keller, L. F. Comparative landscape genetics and the adaptive radiation of Darwin's finches: the role of peripheral isolation.Mol. Ecol. 14, 2943-2957 (2005).
-
(2005)
Mol. Ecol.
, vol.14
, pp. 2943-2957
-
-
Petren, K.1
Grant, P.R.2
Grant, B.R.3
Keller, L.F.4
-
7
-
-
84902331897
-
Exploring the combined role of eustasyandoceanic island thermal subsidence in shaping biodiversity on the Galaagos
-
Ali, J. R. & Aitchison, J. C. Exploring the combined role of eustasyandoceanic island thermal subsidence in shaping biodiversity on the Galaagos. J. Biogeogr. 41, 1227-1241 (2014).
-
(2014)
J. Biogeogr.
, vol.41
, pp. 1227-1241
-
-
Ali, J.R.1
Aitchison, J.C.2
-
8
-
-
84922786468
-
-
(eds Harpp K. S. Mittelstaedt E. d'Ozouville N. & Graham D.) (American Geophysical Union
-
Geist, D., Snell, H., Snell, H., Goddard, C. & Kurz, M. in The Galápagos: A Natural Laboratory for the Earth Sciences (eds Harpp K. S., Mittelstaedt E., d'Ozouville N., & Graham, D.) 145-166 (American Geophysical Union, 2014).
-
(2014)
The Galápagos: A Natural Laboratory for the Earth Sciences
, pp. 145-166
-
-
Geist, D.1
Snell, H.2
Snell, H.3
Goddard, C.4
Kurz, M.5
-
9
-
-
84908069377
-
The evolutionary history of Darwin's finches: Speciation, gene flow, and introgression in a fragmented landscape
-
Farrington, H. L., Lawson, L. P., Clark, C. M. & Petren, K. The evolutionary history of Darwin's finches: speciation, gene flow, and introgression in a fragmented landscape. Evolution 68, 2932-2944 (2014).
-
(2014)
Evolution
, vol.68
, pp. 2932-2944
-
-
Farrington, H.L.1
Lawson, L.P.2
Clark, C.M.3
Petren, K.4
-
10
-
-
4444358439
-
Bmp4 and morphological variation of beaks in Darwin's finches
-
Abzhanov, A., Protas, M., Grant, B. R., Grant, P. R. & Tabin, C. J. Bmp4 and morphological variation of beaks in Darwin's finches. Science 305, 1462-1465 (2004).
-
(2004)
Science
, vol.305
, pp. 1462-1465
-
-
Abzhanov, A.1
Protas, M.2
Grant, B.R.3
Grant, P.R.4
Tabin, C.J.5
-
11
-
-
33746724137
-
The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches
-
Abzhanov, A. et al. The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches. Nature 442, 563-567 (2006).
-
(2006)
Nature
, vol.442
, pp. 563-567
-
-
Abzhanov, A.1
-
12
-
-
79952742814
-
Two developmental modules establish 3D beak-shape variation in Darwin's finches
-
Mallarino, R. et al. Two developmental modules establish 3D beak-shape variation in Darwin's finches. Proc. Natl Acad. Sci. USA 198, 4057-4062 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.198
, pp. 4057-4062
-
-
Mallarino, R.1
-
13
-
-
84896011226
-
Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds
-
Burns, K. J. et al. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. Mol. Phylogenet. Evol. 75, 41-77 (2014).
-
(2014)
Mol. Phylogenet. Evol.
, vol.75
, pp. 41-77
-
-
Burns, K.J.1
-
14
-
-
84874022289
-
The genome of Darwin's finch (Geospiza fortis)
-
3 August
-
Zhang, G., Parker, P., Li, B., Li, H. & Wang, J. The genome of Darwin's finch (Geospiza fortis). GigaScience, http://dx.doi.org/10.5524/100040 (3 August 2012).
-
(2012)
Giga Science
-
-
Zhang, G.1
Parker, P.2
Li, B.3
Li, H.4
Wang, J.5
-
15
-
-
84888634025
-
The evolutionary genomics of birds
-
Ellegren, H. The evolutionary genomics of birds. Annu. Rev. Ecol. Evol. Syst. 44, 239-259 (2013).
-
(2013)
Annu. Rev. Ecol. Evol. Syst.
, vol.44
, pp. 239-259
-
-
Ellegren, H.1
-
16
-
-
62449120610
-
Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata)
-
Balakrishnan, C. N. & Edwards, S. V. Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata). Genetics 181, 645-660 (2009).
-
(2009)
Genetics
, vol.181
, pp. 645-660
-
-
Balakrishnan, C.N.1
Edwards, S.V.2
-
17
-
-
0002521464
-
The avifauna of the Galapagos Islands
-
Swarth, H. S. The avifauna of the Galapagos Islands. Occ. Pap. Calif. Acad. Sci. 18, 1-299 (1931).
-
(1931)
Occ. Pap. Calif. Acad. Sci.
, vol.18
, pp. 1-299
-
-
Swarth, H.S.1
-
18
-
-
0001889050
-
The Galapagos finches (Geospizinae): A study in variation
-
Lack, D. The Galapagos finches (Geospizinae): a study in variation. Occ. Pap. Calif. Acad. Sci. 21, 1-159 (1945).
-
(1945)
Occ. Pap. Calif. Acad. Sci.
, vol.21
, pp. 1-159
-
-
Lack, D.1
-
19
-
-
79961039058
-
Testing for ancient admixture between closely related populations
-
Durand, E. Y., Patterson, N., Reich, D. & Slatkin, M. Testing for ancient admixture between closely related populations. Mol. Biol. Evol. 28, 2239-2252 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2239-2252
-
-
Durand, E.Y.1
Patterson, N.2
Reich, D.3
Slatkin, M.4
-
20
-
-
57749192046
-
Speciation through evolution of sex-linked genes
-
Qvarnstrom, A. & Bailey, R. I. Speciation through evolution of sex-linked genes. Heredity 102, 4-15 (2009).
-
(2009)
Heredity
, vol.102
, pp. 4-15
-
-
Qvarnstrom, A.1
Bailey, R.I.2
-
21
-
-
79960914105
-
Inference of human population history from individual wholegenome sequences
-
Li, H. & Durbin, R. Inference of human population history from individual wholegenome sequences. Nature 475, 493-496 (2011).
-
(2011)
Nature
, vol.475
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
22
-
-
0344562953
-
Goosecoid acts cell autonomously in mesenchyme-derived tissues during craniofacial development
-
Rivera-Perez, J. A., Wakamiya, M. & Behringer, R. R. Goosecoid acts cell autonomously in mesenchyme-derived tissues during craniofacial development. Development 126, 3811-3821 (1999).
-
(1999)
Development
, vol.126
, pp. 3811-3821
-
-
Rivera-Perez, J.A.1
Wakamiya, M.2
Behringer, R.R.3
-
23
-
-
0025891703
-
Retinoic acid treatment alters the distribution of retinoic acid receptor-b transcripts in the embryonic chick face
-
Rowe, A., Richman, J. M. & Brickell, P. M. Retinoic acid treatment alters the distribution of retinoic acid receptor-b transcripts in the embryonic chick face. Development 111, 1007-1016 (1991).
-
(1991)
Development
, vol.111
, pp. 1007-1016
-
-
Rowe, A.1
Richman, J.M.2
Brickell, P.M.3
-
24
-
-
77951976826
-
Disruption of ALX1 causes extreme microphthalmia and severe facial clefting: Expanding the spectrum of autosomal-recessive ALX-related frontonasal dysplasia
-
Uz, E. et al. Disruption of ALX1 causes extreme microphthalmia and severe facial clefting: expanding the spectrum of autosomal-recessive ALX-related frontonasal dysplasia. Am. J. Hum. Genet. 86, 789-796 (2010).
-
(2010)
Am. J. Hum. Genet.
, vol.86
, pp. 789-796
-
-
Uz, E.1
-
25
-
-
84871588386
-
Defective neural crest migration revealed by a zebrafish model of Alx1-related frontonasal dysplasia
-
Dee, C. T., Szymoniuk, C. R., Mills, P. E. D. & Takahashi, T. Defective neural crest migration revealed by a zebrafish model of Alx1-related frontonasal dysplasia. Hum. Mol. Genet. 22, 239-251 (2013).
-
(2013)
Hum. Mol. Genet.
, vol.22
, pp. 239-251
-
-
Dee, C.T.1
Szymoniuk, C.R.2
Mills, P.E.D.3
Takahashi, T.4
-
26
-
-
77950541331
-
Comparative gene expression analysis of avian embryonic facial structures reveals new candidates for human craniofacial disorders
-
Brugmann, S. A. et al. Comparative gene expression analysis of avian embryonic facial structures reveals new candidates for human craniofacial disorders. Hum. Mol. Genet. 19, 920-930 (2010).
-
(2010)
Hum. Mol. Genet.
, vol.19
, pp. 920-930
-
-
Brugmann, S.A.1
-
27
-
-
33744826811
-
Identification of Tgfb1i4 as a downstream target of Foxc1
-
Sommer, P., Napier, H. R., Hogan, B. L. & Kidson, S. H. Identification of Tgfb1i4 as a downstream target of Foxc1. Dev. Growth Differ. 48, 297-308 (2006).
-
(2006)
Dev. Growth Differ.
, vol.48
, pp. 297-308
-
-
Sommer, P.1
Napier, H.R.2
Hogan, B.L.3
Kidson, S.H.4
-
28
-
-
84876529535
-
Factorbook.org: A Wiki-based database for transcription factorbinding data generated by the ENCODE consortium
-
Wang, J. et al. Factorbook.org: a Wiki-based database for transcription factorbinding data generated by the ENCODE consortium. Nucleic Acids Res. 41, D171-D176 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D171-D176
-
-
Wang, J.1
-
29
-
-
68149165614
-
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
-
Kumar, P., Henikoff, S.& Ng, P. C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nature Protocols 4, 1073-1081 (2009).
-
(2009)
Nature Protocols
, vol.4
, pp. 1073-1081
-
-
Kumar, P.1
Henikoff, S.2
Ng, P.C.3
-
31
-
-
84984234133
-
Growth and allometry of external morphology in Darwin's finches (Geospiza) on Isla Daphne Major
-
Boag, P. T. Growth and allometry of external morphology in Darwin's finches (Geospiza) on IslaDaphne Major,Galaagos. J. Zool. 204, 413-441 (1984).
-
(1984)
Galaagos. J. Zool.
, vol.204
, pp. 413-441
-
-
Boag, P.T.1
-
32
-
-
84863496231
-
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
-
The Heliconius Genome Consortium
-
The Heliconius Genome Consortium. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature 487, 94-98 (2012).
-
(2012)
Nature
, vol.487
, pp. 94-98
-
-
-
33
-
-
84879884020
-
Molecular consequences of animal breeding
-
Andersson, L. Molecular consequences of animal breeding. Curr. Opin. Genet. Dev. 23, 295-301 (2013).
-
(2013)
Curr. Opin. Genet. Dev.
, vol.23
, pp. 295-301
-
-
Andersson, L.1
-
34
-
-
84874963219
-
Adaptive evolution ofmultiple traits throughmultiplemutations at a single gene
-
Linnen, C. R. et al. Adaptive evolution ofmultiple traits throughmultiplemutations at a single gene. Science 339, 1312-1316 (2013).
-
(2013)
Science
, vol.339
, pp. 1312-1316
-
-
Linnen, C.R.1
-
35
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel, A. et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15, 1034-1050 (2005).
-
(2005)
Genome Res.
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
-
36
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
-
Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1, 18 (2012).
-
(2012)
Giga Science
, vol.1
, pp. 18
-
-
Luo, R.1
-
37
-
-
67649884743
-
And accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Fast, D.R.2
-
38
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
39
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M. A. et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature Genet. 43, 491-498 (2011).
-
(2011)
Nature Genet.
, vol.43
, pp. 491-498
-
-
Depristo, M.A.1
-
40
-
-
84896009017
-
From FastQ data to high-confidence variant calls: The Genome Analysis Toolkit best practices pipeline
-
Van der Auwera, G. A. et al. From FastQ data to high-confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr. Protoc. Bioinform. 43, 11.10.1-11.10.33 (2002).
-
(2002)
Curr. Protoc. Bioinform.
, vol.43
, pp. 11101-111033
-
-
Van Der Auwera, G.A.1
-
41
-
-
35348817330
-
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
-
Browning, S. R. & Browning, B. L. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81, 1084-1097 (2007).
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 1084-1097
-
-
Browning, S.R.1
Browning, B.L.2
-
42
-
-
34548292504
-
PLINK: A tool set for whole-genome association and populationbased linkage analyses
-
Purcell, S. et al. PLINK: a tool set for whole-genome association and populationbased linkage analyses. Am. J. Hum. Genet. 81, 559-575 (2007).
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 559-575
-
-
Purcell, S.1
-
43
-
-
77952136530
-
A draft sequence of the Neandertal genome
-
Green, R. E. et al. A draft sequence of the Neandertal genome. Science 328, 710-722 (2010).
-
(2010)
Science
, vol.328
, pp. 710-722
-
-
Green, R.E.1
-
44
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm, S. A simple sequentially rejective multiple test procedure. Scand. J. Stat. 6, 65-70 (1979).
-
(1979)
Scand. J. Stat.
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
45
-
-
84873700991
-
Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence
-
Rands, C. et al. Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. BMC Genomics 14, 95 (2013).
-
(2013)
BMC Genomics
, vol.14
, pp. 95
-
-
Rands, C.1
-
46
-
-
43049101093
-
Calibrating the avian molecular clock
-
Weir, J. T. & Schluter, D. Calibrating the avian molecular clock. Mol. Ecol. 17, 2321-2328 (2008).
-
(2008)
Mol. Ecol.
, vol.17
, pp. 2321-2328
-
-
Weir, J.T.1
Schluter, D.2
-
47
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson, G. A. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7, 256-276 (1975).
-
(1975)
Theor. Popul. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
48
-
-
0026499787
-
Demography and the genetically effective sizes of two populations of Darwin's finches
-
Grant, B. R. & Grant, P. R. Demography and the genetically effective sizes of two populations of Darwin's finches. Ecology 73, 766-784 (1992).
-
(1992)
Ecology
, vol.73
, pp. 766-784
-
-
Grant, B.R.1
Grant, P.R.2
-
50
-
-
79960405019
-
The variant call format and VCF tools
-
Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27, 2156-2158 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
-
51
-
-
59949096873
-
Ensembl Compara Gene Trees: Complete, duplication-aware phylogenetic trees in vertebrates
-
Vilella, A. J. et al. EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res. 19, 327-335 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
-
52
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
53
-
-
65449188232
-
Jalview version 2-A multiple sequence alignment editor and analysis workbench
-
Waterhouse, A. M., Procter, J. B., Martin, D. M. A., Clamp, M. & Barton, G. J. Jalview version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25, 1189-1191 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
54
-
-
84899518211
-
Inter Pro Scan 5: Genome-scale protein function classification
-
Jones, P. et al. InterProScan 5: genome-scale protein function classification. Bioinformatics 30, 1236-1240 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 1236-1240
-
-
Jones, P.1
-
55
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; Iso-2; iso-3
-
Cingolani, P. et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin) 6, 80-92 (2012).
-
(2012)
Fly (Austin)
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
-
56
-
-
0033841196
-
The allopatric phase of speciation: The sharpbeaked ground finch (Geospiza difficilis) on the Galaagos islands
-
Grant, B. R., Grant, P. R. & Petren, K. The allopatric phase of speciation: the sharpbeaked ground finch (Geospiza difficilis) on the Galaagos islands. Biol. J. Linn. Soc. 69, 287-317 (2000).
-
(2000)
Biol. J. Linn. Soc.
, vol.69
, pp. 287-317
-
-
Grant, B.R.1
Grant, P.R.2
Petren, K.3
-
57
-
-
0022178644
-
Variation in the size and shape of Darwin's finches
-
Grant, P. R., Abbott, I., Schluter, D., Curry, R. L. & Abbott, L. K. Variation in the size and shape of Darwin's finches. Biol. J. Linn. Soc. 25, 1-39 (1985).
-
(1985)
Biol. J. Linn. Soc.
, vol.25
, pp. 1-39
-
-
Grant, P.R.1
Abbott, I.2
Schluter, D.3
Curry, R.L.4
Abbott, L.K.5
-
58
-
-
0021551136
-
Ecological correlates of morphological evolution in a Darwin's finch. Geospiza difficilis
-
Schluter, D. & Grant, P. R. Ecological correlates of morphological evolution in a Darwin's finch, Geospiza difficilis. Evolution 38, 856-869 (1984).
-
(1984)
Evolution
, vol.38
, pp. 856-869
-
-
Schluter, D.1
Grant, P.R.2
-
59
-
-
84888609856
-
Diversity-dependence ecological speciation, and the role of competition in macroevolution
-
Rabosky, D. Diversity-dependence, ecological speciation, and the role of competition in macroevolution. Ann. Rev. Evol. Ecol. Syst. 44, 481-502 (2013).
-
(2013)
Ann. Rev. Evol. Ecol. Syst.
, vol.44
, pp. 481-502
-
-
Rabosky, D.1
|