-
1
-
-
84872796463
-
Frequency-modulated pulses of ERK activity transmit quantitative proliferation signals
-
Albeck JG, Mills GB, Brugge JS. 2013. Frequency-modulated pulses of ERK activity transmit quantitative proliferation signals. Molecular Cell 49: 249-261. doi: 10.1016/j.molcel.2012.11.002
-
(2013)
Molecular Cell
, vol.49
, pp. 249-261
-
-
Albeck, J.G.1
Mills, G.B.2
Brugge, J.S.3
-
2
-
-
0027450760
-
Functional consequences of engagement of the T cell receptor by low affinity ligands
-
Alexander J. 1993. Functional consequences of engagement of the T cell receptor by low affinity ligands. Journal of Immunology 150: 1-7.
-
(1993)
Journal of Immunology
, vol.150
, pp. 1-7
-
-
Alexander, J.1
-
5
-
-
0032784934
-
Precise developmental regulation of Ets family transcription factors during specification and commitment to the T cell lineage
-
Anderson MK, Hernandez-Hoyos G, Diamond RA, Rothenberg EV. 1999. Precise developmental regulation of Ets family transcription factors during specification and commitment to the T cell lineage. Development 126: 3131-3148.
-
(1999)
Development
, vol.126
, pp. 3131-3148
-
-
Anderson, M.K.1
Hernandez-Hoyos, G.2
Diamond, R.A.3
Rothenberg, E.V.4
-
6
-
-
84907228126
-
A sharp T-cell antigen receptor signaling threshold for T-cell proliferation
-
Au-Yeung BB, Zikherman J, Mueller JL, Ashouri JF, Matloubian M, Cheng DA, Chen Y, Shokat KM, Weiss A. 2014. A sharp T-cell antigen receptor signaling threshold for T-cell proliferation. Proceedings of the National Academy of Sciences of the United States of America 111: E3679-E3688. doi: 10.1073/pnas.1413726111
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, pp. E3679-E3688
-
-
Au-Yeung, B.B.1
Zikherman, J.2
Mueller, J.L.3
Ashouri, J.F.4
Matloubian, M.5
Cheng, D.A.6
Chen, Y.7
Shokat, K.M.8
Weiss, A.9
-
7
-
-
33644827216
-
Reasons why DBA/2 mice are resistant to malarial infection: Expansion of CD3int B220+ gammadelta T cells with double-negative CD4-CD8-phenotype in the liver
-
Bakir HY, Tomiyama-Miyaji C, Watanabe H, Nagura T, Kawamura T, Sekikawa H, Abo T. 2006. Reasons why DBA/2 mice are resistant to malarial infection: expansion of CD3int B220+ gammadelta T cells with double-negative CD4-CD8-phenotype in the liver. Immunology 117: 127-135. doi: 10.1111/j.1365-2567.2005.02273.x
-
(2006)
Immunology
, vol.117
, pp. 127-135
-
-
Bakir, H.Y.1
Tomiyama-Miyaji, C.2
Watanabe, H.3
Nagura, T.4
Kawamura, T.5
Sekikawa, H.6
Abo, T.7
-
8
-
-
3042571215
-
Translational control in T lymphocytes
-
Beretta L. 2004. Translational control in T lymphocytes. International Reviews of Immunology 23: 347-363. doi: 10.1080/08830180490452549
-
(2004)
International Reviews of Immunology
, vol.23
, pp. 347-363
-
-
Beretta, L.1
-
9
-
-
84878513440
-
Distinct translational control in CD4+ T cell subsets
-
Bjur E, Larsson O, Yurchenko E, Zheng L, Gandin V, Topisirovic I, Li S, Wagner CR, Sonenberg N, Piccirillo CA. 2013. Distinct translational control in CD4+ T cell subsets. PLoS Genetics 9: e1003494. doi: 10.1371/journal.pgen.1003494
-
(2013)
PLoS Genetics
, vol.9
-
-
Bjur, E.1
Larsson, O.2
Yurchenko, E.3
Zheng, L.4
Gandin, V.5
Topisirovic, I.6
Li, S.7
Wagner, C.R.8
Sonenberg, N.9
Piccirillo, C.A.10
-
10
-
-
84902184462
-
Reorganization of enhancer patterns in transition from naive to primed pluripotency
-
Buecker C, Srinivasan R, Wu Z, Calo E, Acampora D, Faial T, Simeone A, Tan M, Swigut T, Wysocka J. 2014. Reorganization of enhancer patterns in transition from naive to primed pluripotency. Cell Stem Cell 14: 838-853. doi: 10.1016/j.stem.2014.04.003
-
(2014)
Cell Stem Cell
, vol.14
, pp. 838-853
-
-
Buecker, C.1
Srinivasan, R.2
Wu, Z.3
Calo, E.4
Acampora, D.5
Faial, T.6
Simeone, A.7
Tan, M.8
Swigut, T.9
Wysocka, J.10
-
12
-
-
84861228227
-
TRIM28 prevents autoinflammatory T cell development in vivo
-
Chikuma S, Suita N, Okazaki IM, Shibayama S, Honjo T. 2012. TRIM28 prevents autoinflammatory T cell development in vivo. Nature Immunology 13: 596-603. doi: 10.1038/ni.2293
-
(2012)
Nature Immunology
, vol.13
, pp. 596-603
-
-
Chikuma, S.1
Suita, N.2
Okazaki, I.M.3
Shibayama, S.4
Honjo, T.5
-
14
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, Hanna J, Lodato MA, Frampton GM, Sharp PA, Boyer LA, Young RA, Jaenisch R. 2010. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proceedings of the National Academy of Sciences of the United States of America 107: 21931-21936. doi: 10.1073/pnas.1016071107
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
Boyer, L.A.11
Young, R.A.12
Jaenisch, R.13
-
15
-
-
33845607123
-
Thymic selection threshold defined by compartmentalization of Ras/MAPK signalling
-
Daniels MA, Teixeiro E, Gill J, Hausmann B, Roubaty D, Holmberg K, Werlen G, Holländer GA, Gascoigne NR, Palmer E. 2006. Thymic selection threshold defined by compartmentalization of Ras/MAPK signalling. Nature 444: 724-729. doi: 10.1038/nature05269
-
(2006)
Nature
, vol.444
, pp. 724-729
-
-
Daniels, M.A.1
Teixeiro, E.2
Gill, J.3
Hausmann, B.4
Roubaty, D.5
Holmberg, K.6
Werlen, G.7
Holländer, G.A.8
Gascoigne, N.R.9
Palmer, E.10
-
16
-
-
58249092059
-
Digital signaling and hysteresis characterize ras activation in lymphoid cells
-
Das J, Ho M, Zikherman J, Govern C, Yang M, Weiss A, Chakraborty AK, Roose JP. 2009. Digital signaling and hysteresis characterize ras activation in lymphoid cells. Cell 136: 337-351. doi: 10.1016/j.cell.2008.11.051
-
(2009)
Cell
, vol.136
, pp. 337-351
-
-
Das, J.1
Ho, M.2
Zikherman, J.3
Govern, C.4
Yang, M.5
Weiss, A.6
Chakraborty, A.K.7
Roose, J.P.8
-
17
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. 2013. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29: 15-21. doi: 10.1093/bioinformatics/bts635
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
18
-
-
84870922385
-
Network analysis reveals centrally connected genes and pathways involved in CD8+ T cell exhaustion versus memory
-
Doering TA, Crawford A, Angelosanto JM, Paley MA, Ziegler CG, Wherry EJ. 2012. Network analysis reveals centrally connected genes and pathways involved in CD8+ T cell exhaustion versus memory. Immunity 37: 1130-1144. doi: 10.1016/j.immuni.2012.08.021
-
(2012)
Immunity
, vol.37
, pp. 1130-1144
-
-
Doering, T.A.1
Crawford, A.2
Angelosanto, J.M.3
Paley, M.A.4
Ziegler, C.G.5
Wherry, E.J.6
-
19
-
-
34848898406
-
Quantitative challenges in understanding ligand discrimination by alphabeta T cells
-
Feinerman O, Germain RN, Altan-Bonnet G. 2008. Quantitative challenges in understanding ligand discrimination by alphabeta T cells. Molecular Immunology 45: 619-631. doi: 10.1016/j.molimm.2007.03.028
-
(2008)
Molecular Immunology
, vol.45
, pp. 619-631
-
-
Feinerman, O.1
Germain, R.N.2
Altan-Bonnet, G.3
-
20
-
-
84890561320
-
Themis sets the signal threshold for positive and negative selection in T-cell development
-
Fu G, Casas J, Rigaud S, Rybakin V, Lambolez F, Brzostek J, Hoerter JA, Paster W, Acuto O, Cheroutre H, Sauer K, Gascoigne NR. 2013. Themis sets the signal threshold for positive and negative selection in T-cell development. Nature 504: 441-445. doi: 10.1038/nature12718
-
(2013)
Nature
, vol.504
, pp. 441-445
-
-
Fu, G.1
Casas, J.2
Rigaud, S.3
Rybakin, V.4
Lambolez, F.5
Brzostek, J.6
Hoerter, J.A.7
Paster, W.8
Acuto, O.9
Cheroutre, H.10
Sauer, K.11
Gascoigne, N.R.12
-
21
-
-
84866303839
-
A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals
-
Garber M, Yosef N, Goren A, Raychowdhury R, Thielke A, Guttman M, Robinson J, Minie B, Chevrier N, Itzhaki Z, Blecher-Gonen R, Bornstein C, Amann-Zalcenstein D, Weiner A, Friedrich D, Meldrim J, Ram O, Cheng C, Gnirke A, Fisher S, et al. 2012. A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals. Molecular Cell 47: 810-822. doi: 10.1016/j.molcel.2012.07.030
-
(2012)
Molecular Cell
, vol.47
, pp. 810-822
-
-
Garber, M.1
Yosef, N.2
Goren, A.3
Raychowdhury, R.4
Thielke, A.5
Guttman, M.6
Robinson, J.7
Minie, B.8
Chevrier, N.9
Itzhaki, Z.10
Blecher-Gonen, R.11
Bornstein, C.12
Amann-Zalcenstein, D.13
Weiner, A.14
Friedrich, D.15
Meldrim, J.16
Ram, O.17
Cheng, C.18
Gnirke, A.19
Fisher, S.20
more..
-
22
-
-
84869234288
-
Limitations and possibilities of low cell number ChIP-seq
-
Gilfillan GD, Hughes T, Sheng Y, Hjorthaug HS, Straub T, Gervin K, Harris JR, Undlien DE, Lyle R. 2012. Limitations and possibilities of low cell number ChIP-seq. BMC Genomics 13: 645. doi: 10.1186/1471-2164-13-645
-
(2012)
BMC Genomics
, vol.13
, pp. 645
-
-
Gilfillan, G.D.1
Hughes, T.2
Sheng, Y.3
Hjorthaug, H.S.4
Straub, T.5
Gervin, K.6
Harris, J.R.7
Undlien, D.E.8
Lyle, R.9
-
23
-
-
84869116884
-
A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes
-
Glasmacher E, Agrawal S, Chang AB, Murphy TL, Zeng W, Vander Lugt B, Khan AA, Ciofani M, Spooner CJ, Rutz S, Hackney J, Nurieva R, Escalante CR, Ouyang W, Littman DR, Murphy KM, Singh H. 2012. A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes. Science 338: 975-980. doi: 10.1126/science.1228309
-
(2012)
Science
, vol.338
, pp. 975-980
-
-
Glasmacher, E.1
Agrawal, S.2
Chang, A.B.3
Murphy, T.L.4
Zeng, W.5
Vander Lugt, B.6
Khan, A.A.7
Ciofani, M.8
Spooner, C.J.9
Rutz, S.10
Hackney, J.11
Nurieva, R.12
Escalante, C.R.13
Ouyang, W.14
Littman, D.R.15
Murphy, K.M.16
Singh, H.17
-
24
-
-
84920724792
-
Environment drives selection and function of enhancers controlling tissue-specific macrophage identities
-
Gosselin D, Link VM, Romanoski CE, Fonseca GJ, Eichenfield DZ, Spann NJ, Stender JD, Chun HB, Garner H, Geissmann F, Glass CK. 2014. Environment drives selection and function of enhancers controlling tissue-specific macrophage identities. Cell 159: 1327-1340. doi: 10.1016/j.cell.2014.11.023
-
(2014)
Cell
, vol.159
, pp. 1327-1340
-
-
Gosselin, D.1
Link, V.M.2
Romanoski, C.E.3
Fonseca, G.J.4
Eichenfield, D.Z.5
Spann, N.J.6
Stender, J.D.7
Chun, H.B.8
Garner, H.9
Geissmann, F.10
Glass, C.K.11
-
25
-
-
77950262538
-
Nucleosome dynamics define transcriptional enhancers
-
He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, Zhang Y, Xu K, Ni M, Lupien M, Mieczkowski P, Lieb JD, Zhao K, Brown M, Liu XS. 2010. Nucleosome dynamics define transcriptional enhancers. Nature Genetics 42: 343-347. doi: 10.1038/ng.545
-
(2010)
Nature Genetics
, vol.42
, pp. 343-347
-
-
He, H.H.1
Meyer, C.A.2
Shin, H.3
Bailey, S.T.4
Wei, G.5
Wang, Q.6
Zhang, Y.7
Xu, K.8
Ni, M.9
Lupien, M.10
Mieczkowski, P.11
Lieb, J.D.12
Zhao, K.13
Brown, M.14
Liu, X.S.15
-
26
-
-
0020065908
-
Contribution of antigen-presenting cell major histocompatibility complex gene products to the specificity of antigen-induced T cell activation
-
Heber-Katz E, Schwartz RH, Matis LA, Hannum C, Fairwell T, Appella E, Hansburg D. 1982. Contribution of antigen-presenting cell major histocompatibility complex gene products to the specificity of antigen-induced T cell activation. The Journal of Experimental Medicine 155: 1086-1099. doi: 10.1084/jem.155.4.1086
-
(1982)
The Journal of Experimental Medicine
, vol.155
, pp. 1086-1099
-
-
Heber-Katz, E.1
Schwartz, R.H.2
Matis, L.A.3
Hannum, C.4
Fairwell, T.5
Appella, E.6
Hansburg, D.7
-
27
-
-
0020170133
-
The fine specificity of antigen and Ia determinant recognition by T cell hybridoma clones specific for pigeon cytochrome c
-
Hedrick SM, Matis LA, Hecht TT, Samelson LE, Longo DL, Heber-Katz E, Schwartz RH. 1982. The fine specificity of antigen and Ia determinant recognition by T cell hybridoma clones specific for pigeon cytochrome c. Cell 30: 141-152. doi: 10.1016/0092-8674(82)90020-4
-
(1982)
Cell
, vol.30
, pp. 141-152
-
-
Hedrick, S.M.1
Matis, L.A.2
Hecht, T.T.3
Samelson, L.E.4
Longo, D.L.5
Heber-Katz, E.6
Schwartz, R.H.7
-
28
-
-
0021223872
-
Sequence relationships between putative T-cell receptor polypeptides and immunoglobulins
-
Hedrick SM, Nielsen EA, Kavaler J, Cohen DI, Davis MM. 1984. Sequence relationships between putative T-cell receptor polypeptides and immunoglobulins. Nature 308: 153-158. doi: 10.1038/308153a0
-
(1984)
Nature
, vol.308
, pp. 153-158
-
-
Hedrick, S.M.1
Nielsen, E.A.2
Kavaler, J.3
Cohen, D.I.4
Davis, M.M.5
-
29
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK. 2010. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Molecular Cell 38: 576-589. doi: 10.1016/j.molcel.2010.05.004
-
(2010)
Molecular Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
30
-
-
84888641656
-
Effect of natural genetic variation on enhancer selection and function
-
Heinz S, Romanoski CE, Benner C, Allison KA, Kaikkonen MU, Orozco LD, Glass CK. 2013. Effect of natural genetic variation on enhancer selection and function. Nature 503: 487-492. doi: 10.1038/nature12615
-
(2013)
Nature
, vol.503
, pp. 487-492
-
-
Heinz, S.1
Romanoski, C.E.2
Benner, C.3
Allison, K.A.4
Kaikkonen, M.U.5
Orozco, L.D.6
Glass, C.K.7
-
31
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz D, Abraham BJ, Lee TI, Lau A, Saint-AndréV, Sigova AA, Hoke HA, Young RA. 2013. Super-enhancers in the control of cell identity and disease. Cell 155: 934-947. doi: 10.1016/j.cell.2013.09.053
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-André, V.5
Sigova, A.A.6
Hoke, H.A.7
Young, R.A.8
-
32
-
-
84887615587
-
A single peptide-major histocompatibility complex ligand triggers digital cytokine secretion in CD4(+) T cells
-
Huang J, Brameshuber M, Zeng X, Xie J, Li QJ, Chien YH, Valitutti S, Davis MM. 2013. A single peptide-major histocompatibility complex ligand triggers digital cytokine secretion in CD4(+) T cells. Immunity 39: 846-857. doi: 10.1016/j.immuni.2013.08.036
-
(2013)
Immunity
, vol.39
, pp. 846-857
-
-
Huang, J.1
Brameshuber, M.2
Zeng, X.3
Xie, J.4
Li, Q.J.5
Chien, Y.H.6
Valitutti, S.7
Davis, M.M.8
-
33
-
-
3142682595
-
T cell receptor signaling: Beyond complex complexes
-
Huang Y, Wange RL. 2004. T cell receptor signaling: beyond complex complexes. The Journal of Biological Chemistry 279: 28827-28830. doi: 10.1074/jbc.R400012200
-
(2004)
The Journal of Biological Chemistry
, vol.279
, pp. 28827-28830
-
-
Huang, Y.1
Wange, R.L.2
-
34
-
-
0037167816
-
Direct observation of ligand recognition by T cells
-
Irvine DJ, Purbhoo MA, Krogsgaard M, Davis MM. 2002. Direct observation of ligand recognition by T cells. Nature 419: 845-849. doi: 10.1038/nature01076
-
(2002)
Nature
, vol.419
, pp. 845-849
-
-
Irvine, D.J.1
Purbhoo, M.A.2
Krogsgaard, M.3
Davis, M.M.4
-
35
-
-
0001937634
-
The somatic generation of immune recognition
-
Jerne NK. 1971. The somatic generation of immune recognition. European Journal of Immunology 1: 1-9. doi: 10.1002/eji.1830010102
-
(1971)
European Journal of Immunology
, vol.1
, pp. 1-9
-
-
Jerne, N.K.1
-
36
-
-
84881526410
-
Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription
-
Kaikkonen MU, Spann NJ, Heinz S, Romanoski CE, Allison KA, Stender JD, Chun HB, Tough DF, Prinjha RK, Benner C, Glass CK. 2013. Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription. Molecular Cell 51: 310-325. doi: 10.1016/j.molcel.2013.07.010
-
(2013)
Molecular Cell
, vol.51
, pp. 310-325
-
-
Kaikkonen, M.U.1
Spann, N.J.2
Heinz, S.3
Romanoski, C.E.4
Allison, K.A.5
Stender, J.D.6
Chun, H.B.7
Tough, D.F.8
Prinjha, R.K.9
Benner, C.10
Glass, C.K.11
-
37
-
-
0024444304
-
Selective development of CD4+ T cells in transgenic mice expressing a class II MHC-restricted antigen receptor
-
Kaye J, Hsu ML, Sauron ME, Jameson SC, Gascoigne NR, Hedrick SM. 1989. Selective development of CD4+ T cells in transgenic mice expressing a class II MHC-restricted antigen receptor. Nature 341: 746-749. doi: 10.1038/341746a0
-
(1989)
Nature
, vol.341
, pp. 746-749
-
-
Kaye, J.1
Hsu, M.L.2
Sauron, M.E.3
Jameson, S.C.4
Gascoigne, N.R.5
Hedrick, S.M.6
-
38
-
-
0033404953
-
Partially phosphorylated T cell receptor zeta molecules can inhibit T cell activation
-
Kersh EN, Kersh GJ, Allen PM. 1999. Partially phosphorylated T cell receptor zeta molecules can inhibit T cell activation. The Journal of Experimental Medicine 190: 1627-1636. doi: 10.1084/jem.190.11.1627
-
(1999)
The Journal of Experimental Medicine
, vol.190
, pp. 1627-1636
-
-
Kersh, E.N.1
Kersh, G.J.2
Allen, P.M.3
-
39
-
-
0032563231
-
Fidelity of T cell activation through multistep T cell receptor zeta phosphorylation
-
Kersh EN, Shaw AS, Allen PM. 1998a. Fidelity of T cell activation through multistep T cell receptor zeta phosphorylation. Science 281: 572-575. doi: 10.1126/science.281.5376.572
-
(1998)
Science
, vol.281
, pp. 572-575
-
-
Kersh, E.N.1
Shaw, A.S.2
Allen, P.M.3
-
40
-
-
0032438551
-
High-and low-potency ligands with similar affinities for the TCR: The importance of kinetics in TCR signaling
-
Kersh GJ, Kersh EN, Fremont DH, Allen PM. 1998b. High-and low-potency ligands with similar affinities for the TCR: the importance of kinetics in TCR signaling. Immunity 9: 817-826. doi: 10.1016/S1074-7613(00)80647-0
-
(1998)
Immunity
, vol.9
, pp. 817-826
-
-
Kersh, G.J.1
Kersh, E.N.2
Fremont, D.H.3
Allen, P.M.4
-
41
-
-
78049520584
-
Cutting edge: TCR ligation triggers digital activation of NF-kappaB
-
Kingeter LM, Paul S, Maynard SK, Cartwright NG, Schaefer BC, Cuttingedge BC. 2010. Cutting edge: TCR ligation triggers digital activation of NF-kappaB. The Journal of Immunology 185: 4520-4524. doi: 10.4049/jimmunol.1001051
-
(2010)
The Journal of Immunology
, vol.185
, pp. 4520-4524
-
-
Kingeter, L.M.1
Paul, S.2
Maynard, S.K.3
Cartwright, N.G.4
Schaefer, B.C.5
Cuttingedge, B.C.6
-
42
-
-
84865777819
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
-
Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, et al. 2012. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research 22: 1813-1831. doi: 10.1101/gr.136184.111
-
(2012)
Genome Research
, vol.22
, pp. 1813-1831
-
-
Landt, S.G.1
Marinov, G.K.2
Kundaje, A.3
Kheradpour, P.4
Pauli, F.5
Batzoglou, S.6
Bernstein, B.E.7
Bickel, P.8
Brown, J.B.9
Cayting, P.10
Chen, Y.11
DeSalvo, G.12
Epstein, C.13
Fisher-Aylor, K.I.14
Euskirchen, G.15
Gerstein, M.16
Gertz, J.17
Hartemink, A.J.18
Hoffman, M.M.19
Iyer, V.R.20
more..
-
43
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods 9: 357-359. doi: 10.1038/nmeth.1923
-
(2012)
Nature Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
44
-
-
84867861268
-
BATF-JUN is critical for IRF4-mediated transcription in T cells
-
Li P, Spolski R, Liao W, Wang L, Murphy TL, Murphy KM, Leonard WJ. 2012. BATF-JUN is critical for IRF4-mediated transcription in T cells. Nature 490: 543-546. doi: 10.1038/nature11530
-
(2012)
Nature
, vol.490
, pp. 543-546
-
-
Li, P.1
Spolski, R.2
Liao, W.3
Wang, L.4
Murphy, T.L.5
Murphy, K.M.6
Leonard, W.J.7
-
45
-
-
84876222028
-
Selective inhibition of tumor oncogenes by disruption of super-enhancers
-
Lovén J, Hoke HA, Lin CY, Lau A, Orlando DA, Vakoc CR, Bradner JE, Lee TI, Young RA. 2013. Selective inhibition of tumor oncogenes by disruption of super-enhancers. Cell 153: 320-334. doi: 10.1016/j.cell.2013.03.036
-
(2013)
Cell
, vol.153
, pp. 320-334
-
-
Lovén, J.1
Hoke, H.A.2
Lin, C.Y.3
Lau, A.4
Orlando, D.A.5
Vakoc, C.R.6
Bradner, J.E.7
Lee, T.I.8
Young, R.A.9
-
46
-
-
84886720433
-
The transcription factor IRF4 is essential for TCR affinity-mediated metabolic programming and clonal expansion of T cells
-
Man K, Miasari M, Shi W, Xin A, Henstridge DC, Preston S, Pellegrini M, Belz GT, Smyth GK, Febbraio MA, Nutt SL, Kallies A. 2013. The transcription factor IRF4 is essential for TCR affinity-mediated metabolic programming and clonal expansion of T cells. Nature Immunology 14: 1155-1165. doi: 10.1038/ni.2710
-
(2013)
Nature Immunology
, vol.14
, pp. 1155-1165
-
-
Man, K.1
Miasari, M.2
Shi, W.3
Xin, A.4
Henstridge, D.C.5
Preston, S.6
Pellegrini, M.7
Belz, G.T.8
Smyth, G.K.9
Febbraio, M.A.10
Nutt, S.L.11
Kallies, A.12
-
47
-
-
84874273811
-
The transcription factor NFAT exhibits signal memory during serial T cell interactions with antigen-presenting cells
-
Marangoni F, Murooka TT, Manzo T, Kim EY, Carrizosa E, Elpek NM, Mempel TR. 2013. The transcription factor NFAT exhibits signal memory during serial T cell interactions with antigen-presenting cells. Immunity 38: 237-249. doi: 10.1016/j.immuni.2012.09.012
-
(2013)
Immunity
, vol.38
, pp. 237-249
-
-
Marangoni, F.1
Murooka, T.T.2
Manzo, T.3
Kim, E.Y.4
Carrizosa, E.5
Elpek, N.M.6
Mempel, T.R.7
-
48
-
-
84914690072
-
Antigen affinity, costimulation, and cytokine inputs sum linearly to amplify T cell expansion
-
Marchingo JM, Kan A, Sutherland RM, Duffy KR, Wellard CJ, Belz GT, Lew AM, Dowling MR, Heinzel S, Hodgkin PD. 2014. Antigen affinity, costimulation, and cytokine inputs sum linearly to amplify T cell expansion. Science 346: 1123-1127. doi: 10.1126/science.1260044
-
(2014)
Science
, vol.346
, pp. 1123-1127
-
-
Marchingo, J.M.1
Kan, A.2
Sutherland, R.M.3
Duffy, K.R.4
Wellard, C.J.5
Belz, G.T.6
Lew, A.M.7
Dowling, M.R.8
Heinzel, S.9
Hodgkin, P.D.10
-
49
-
-
77957220857
-
Comparative epigenomic analysis of murine and human adipogenesis
-
Mikkelsen TS, Xu Z, Zhang X, Wang L, Gimble JM, Lander ES, Rosen ED. 2010. Comparative epigenomic analysis of murine and human adipogenesis. Cell 143: 156-169. doi: 10.1016/j.cell.2010.09.006
-
(2010)
Cell
, vol.143
, pp. 156-169
-
-
Mikkelsen, T.S.1
Xu, Z.2
Zhang, X.3
Wang, L.4
Gimble, J.M.5
Lander, E.S.6
Rosen, E.D.7
-
50
-
-
84901281295
-
The histone methyltransferase activity of MLL1 is dispensable for hematopoiesis and leukemogenesis
-
Mishra BP, Zaffuto KM, Artinger EL, Org T, Mikkola HK, Cheng C, Djabali M, Ernst P. 2014. The histone methyltransferase activity of MLL1 is dispensable for hematopoiesis and leukemogenesis. Cell Reports 7: 1239-1247. doi: 10.1016/j.celrep.2014.04.015
-
(2014)
Cell Reports
, vol.7
, pp. 1239-1247
-
-
Mishra, B.P.1
Zaffuto, K.M.2
Artinger, E.L.3
Org, T.4
Mikkola, H.K.5
Cheng, C.6
Djabali, M.7
Ernst, P.8
-
51
-
-
84908125586
-
Variation and genetic Control of GeneExpression in primary Immunocytes across inbred Mouse Strains
-
The Immunological Genome Consortium
-
Mostafavi S, Ortiz-Lopez A, Bogue MA, Hattori K, Pop C, Koller D, Mathis D, Benoist C, The Immunological Genome Consortium. 2014. Variation and genetic Control of GeneExpression in primary Immunocytes across inbred Mouse Strains. The Journal of Immunology 193: 4485-4496. doi: 10.4049/jimmunol.1401280
-
(2014)
The Journal of Immunology
, vol.193
, pp. 4485-4496
-
-
Mostafavi, S.1
Ortiz-Lopez, A.2
Bogue, M.A.3
Hattori, K.4
Pop, C.5
Koller, D.6
Mathis, D.7
Benoist, C.8
-
52
-
-
80155137594
-
Master transcription factors determine cell-type-specific responses to TGF-b signaling
-
Mullen AC, Orlando DA, Newman JJ, Lovén J, Kumar RM, Bilodeau S, Reddy J, Guenther MG, DeKoter RP, Young RA. 2011. Master transcription factors determine cell-type-specific responses to TGF-b signaling. Cell 147: 565-576. doi: 10.1016/j.cell.2011.08.050
-
(2011)
Cell
, vol.147
, pp. 565-576
-
-
Mullen, A.C.1
Orlando, D.A.2
Newman, J.J.3
Lovén, J.4
Kumar, R.M.5
Bilodeau, S.6
Reddy, J.7
Guenther, M.G.8
DeKoter, R.P.9
Young, R.A.10
-
53
-
-
33646336602
-
MAPK signal specificity: The right place at the right time
-
Murphy LO, Blenis J. 2006. MAPK signal specificity: the right place at the right time. Trends in Biochemical Sciences 31: 268-275. doi: 10.1016/j.tibs.2006.03.009
-
(2006)
Trends in Biochemical Sciences
, vol.31
, pp. 268-275
-
-
Murphy, L.O.1
Blenis, J.2
-
54
-
-
84879689439
-
Specificity through cooperation: BATF-IRF interactions control immune-regulatory networks
-
Murphy TL, Tussiwand R, Murphy KM. 2013. Specificity through cooperation: BATF-IRF interactions control immune-regulatory networks. Nature Reviews. Immunology 13: 499-509. doi: 10.1038/nri3470
-
(2013)
Nature Reviews. Immunology
, vol.13
, pp. 499-509
-
-
Murphy, T.L.1
Tussiwand, R.2
Murphy, K.M.3
-
55
-
-
84902169111
-
Graded levels of IRF4 regulate CD8+ T cell differentiation and expansion, but not attrition, in response to acute virus infection
-
Nayar R, Schutten E, Bautista B, Daniels K, Prince AL, Enos M, Brehm MA, Swain SL, Welsh RM, Berg LJ. 2014. Graded levels of IRF4 regulate CD8+ T cell differentiation and expansion, but not attrition, in response to acute virus infection. The Journal of Immunology 192: 5881-5893. doi: 10.4049/jimmunol.1303187
-
(2014)
The Journal of Immunology
, vol.192
, pp. 5881-5893
-
-
Nayar, R.1
Schutten, E.2
Bautista, B.3
Daniels, K.4
Prince, A.L.5
Enos, M.6
Brehm, M.A.7
Swain, S.L.8
Welsh, R.M.9
Berg, L.J.10
-
56
-
-
84930674727
-
Immunology. Expanding the role of metabolism in T cells
-
O’Sullivan D, Pearce EL. 2015. Immunology. Expanding the role of metabolism in T cells. Science 348: 976-977. doi: 10.1126/science.aac4997
-
(2015)
Science
, vol.348
, pp. 976-977
-
-
O’Sullivan, D.1
Pearce, E.L.2
-
57
-
-
84872522528
-
Latent enhancers activated by stimulation in differentiated cells
-
Ostuni R, Piccolo V, Barozzi I, Polletti S, Termanini A, Bonifacio S, Curina A, Prosperini E, Ghisletti S, Natoli G. 2013. Latent enhancers activated by stimulation in differentiated cells. Cell 152: 157-171. doi: 10.1016/j.cell.2012.12.018
-
(2013)
Cell
, vol.152
, pp. 157-171
-
-
Ostuni, R.1
Piccolo, V.2
Barozzi, I.3
Polletti, S.4
Termanini, A.5
Bonifacio, S.6
Curina, A.7
Prosperini, E.8
Ghisletti, S.9
Natoli, G.10
-
58
-
-
34250793069
-
The interferon regulatory factor family in host defense: Mechanism of action
-
Ozato K, Tailor P, Kubota T. 2007. The interferon regulatory factor family in host defense: mechanism of action. The Journal of Biological Chemistry 282: 20065-20069. doi: 10.1074/jbc.R700003200
-
(2007)
The Journal of Biological Chemistry
, vol.282
, pp. 20065-20069
-
-
Ozato, K.1
Tailor, P.2
Kubota, T.3
-
59
-
-
80555140075
-
Scikit-learn: Machine learning in python
-
Pedregosa F, Varoquaux G, Thirion B, Grisel O, Blondel M, Weiss R, Vanderplas J, Passos A, Perrot M, Duchesnay E. 2011. Scikit-learn: Machine learning in python. Journal of Machine Learning Research 12: 2825-2830.
-
(2011)
Journal of Machine Learning Research
, vol.12
, pp. 2825-2830
-
-
Pedregosa, F.1
Varoquaux, G.2
Thirion, B.3
Grisel, O.4
Blondel, M.5
Weiss, R.6
Vanderplas, J.7
Passos, A.8
Perrot, M.9
Duchesnay, E.10
-
61
-
-
41449097790
-
Digital NFATc2 activation per cell transforms graded T cell receptor activation into an all-or-none IL-2 expression
-
Podtschaske M, Benary U, Zwinger S, Höfer T, Radbruch A, Baumgrass R. 2007. Digital NFATc2 activation per cell transforms graded T cell receptor activation into an all-or-none IL-2 expression. PloS One 2: e935. doi: 10.1371/journal.pone.0000935
-
(2007)
PloS One
, vol.2
-
-
Podtschaske, M.1
Benary, U.2
Zwinger, S.3
Höfer, T.4
Radbruch, A.5
Baumgrass, R.6
-
62
-
-
84923278138
-
High-throughput detection of miRNAs and gene-specific mRNA at the single-cell level by flow cytometry
-
Porichis F, Hart MG, Griesbeck M, Everett HL, Hassan M, Baxter AE, Lindqvist M, Miller SM, Soghoian DZ, Kavanagh DG, Reynolds S, Norris B, Mordecai SK, Nguyen Q, Lai C, Kaufmann DE. 2014. High-throughput detection of miRNAs and gene-specific mRNA at the single-cell level by flow cytometry. Nature Communications 5. doi: 10.1038/ncomms6641
-
(2014)
Nature Communications
, pp. 5
-
-
Porichis, F.1
Hart, M.G.2
Griesbeck, M.3
Everett, H.L.4
Hassan, M.5
Baxter, A.E.6
Lindqvist, M.7
Miller, S.M.8
Soghoian, D.Z.9
Kavanagh, D.G.10
Reynolds, S.11
Norris, B.12
Mordecai, S.K.13
Nguyen, Q.14
Lai, C.15
Kaufmann, D.E.16
-
63
-
-
58249087468
-
Origin of the sharp boundary that discriminates positive and negative selection of thymocytes
-
Prasad A, Zikherman J, Das J, Roose JP, Weiss A, Chakraborty AK. 2009. Origin of the sharp boundary that discriminates positive and negative selection of thymocytes. Proceedings of the National Academy of Sciences of the United States of America 106: 528-533. doi: 10.1073/pnas.0805981105
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 528-533
-
-
Prasad, A.1
Zikherman, J.2
Das, J.3
Roose, J.P.4
Weiss, A.5
Chakraborty, A.K.6
-
64
-
-
34247118887
-
Signalling to translation: How signal transduction pathways control the protein synthetic machinery
-
Proud CG. 2007. Signalling to translation: how signal transduction pathways control the protein synthetic machinery. The Biochemical Journal 403: 217-234. doi: 10.1042/BJ20070024
-
(2007)
The Biochemical Journal
, vol.403
, pp. 217-234
-
-
Proud, C.G.1
-
65
-
-
0027936441
-
Ap-1 transcriptional activity requires both T-cell receptor-mediated and co-stimulatory signals in primary T lymphocytes
-
Rincón M, Flavell RA. 1994. Ap-1 transcriptional activity requires both T-cell receptor-mediated and co-stimulatory signals in primary T lymphocytes. The EMBO Journal 13: 4370-4381.
-
(1994)
The EMBO Journal
, vol.13
, pp. 4370-4381
-
-
Rincón, M.1
Flavell, R.A.2
-
66
-
-
0033179403
-
Peptide dose, affinity, and time of differentiation can contribute to the Th1/Th2 cytokine balance
-
Rogers PR, Croft M. 1999. Peptide dose, affinity, and time of differentiation can contribute to the Th1/Th2 cytokine balance. Journal of Immunology 163: 1205-1213.
-
(1999)
Journal of Immunology
, vol.163
, pp. 1205-1213
-
-
Rogers, P.R.1
Croft, M.2
-
67
-
-
0032522809
-
Modulation of naive CD4 T cell activation with altered peptide ligands: The nature of the peptide and presentation in the context of costimulation are critical for a sustained response
-
Rogers PR, Grey HM, Croft M. 1998. Modulation of naive CD4 T cell activation with altered peptide ligands: the nature of the peptide and presentation in the context of costimulation are critical for a sustained response. Journal of Immunology 160: 3698-3704.
-
(1998)
Journal of Immunology
, vol.160
, pp. 3698-3704
-
-
Rogers, P.R.1
Grey, H.M.2
Croft, M.3
-
68
-
-
84921270388
-
Targeting RAS-ERK signalling in cancer: Promises and challenges
-
Samatar AA, Poulikakos PI. 2014. Targeting RAS-ERK signalling in cancer: promises and challenges. Nature Reviews. Drug Discovery 13: 928-942. doi: 10.1038/nrd4281
-
(2014)
Nature Reviews. Drug Discovery
, vol.13
, pp. 928-942
-
-
Samatar, A.A.1
Poulikakos, P.I.2
-
69
-
-
27144458683
-
Cyclins and CDKS in development and cancer: Lessons from genetically modified mice
-
Santamaria D, Ortega S. 2006. Cyclins and CDKS in development and cancer: lessons from genetically modified mice. Frontiers in Bioscience 11: 1164-1188. doi: 10.2741/1871
-
(2006)
Frontiers in Bioscience
, vol.11
, pp. 1164-1188
-
-
Santamaria, D.1
Ortega, S.2
-
70
-
-
2442542309
-
Cutting edge: Extracellular signal-regulated kinases 1/2 function as integrators of TCR signal strength
-
Schade AE, Levine AD, Cuttingedge AD. 2004. Cutting edge: extracellular signal-regulated kinases 1/2 function as integrators of TCR signal strength. The Journal of Immunology 172: 5828-5832. doi: 10.4049/jimmunol.172.10.5828
-
(2004)
The Journal of Immunology
, vol.172
, pp. 5828-5832
-
-
Schade, A.E.1
Levine, A.D.2
Cuttingedge, A.D.3
-
71
-
-
0027298445
-
Induction of T-cell anergy by altered T-cell-receptor ligand on live antigen-presenting cells
-
Sloan-Lancaster J, Evavold BD, Allen PM. 1993. Induction of T-cell anergy by altered T-cell-receptor ligand on live antigen-presenting cells. Nature 363: 156-159. doi: 10.1038/363156a0
-
(1993)
Nature
, vol.363
, pp. 156-159
-
-
Sloan-Lancaster, J.1
Evavold, B.D.2
Allen, P.M.3
-
72
-
-
0027967385
-
Partial T cell signaling: Altered phospho-zeta and lack of zap70 recruitment in APL-induced T cell anergy
-
Sloan-Lancaster J, Shaw AS, Rothbard JB, Allen PM. 1994. Partial T cell signaling: altered phospho-zeta and lack of zap70 recruitment in APL-induced T cell anergy. Cell 79: 913-922. doi: 10.1016/0092-8674(94)90080-9
-
(1994)
Cell
, vol.79
, pp. 913-922
-
-
Sloan-Lancaster, J.1
Shaw, A.S.2
Rothbard, J.B.3
Allen, P.M.4
-
73
-
-
0018678110
-
T-lymphocyte response to cytochrome c. I. Demonstration of a T-cell heteroclitic proliferative response and identification of a topographic antigenic determinant on pigeon cytochrome c whose immune recognition requires two complementing major histocompatibility complex-linked immune response genes
-
Solinger AM, Ultee ME, Margoliash E, Schwartz RH. 1979. T-lymphocyte response to cytochrome c. I. Demonstration of a T-cell heteroclitic proliferative response and identification of a topographic antigenic determinant on pigeon cytochrome c whose immune recognition requires two complementing major histocompatibility complex-linked immune response genes. The Journal of Experimental Medicine 150: 830-848. doi: 10.1084/jem.150.4.830
-
(1979)
The Journal of Experimental Medicine
, vol.150
, pp. 830-848
-
-
Solinger, A.M.1
Ultee, M.E.2
Margoliash, E.3
Schwartz, R.H.4
-
74
-
-
84870058502
-
Facilitators and impediments of the pluripotency reprogramming factors’ initial engagement with the genome
-
Soufi A, Donahue G, Zaret KS. 2012. Facilitators and impediments of the pluripotency reprogramming factors’ initial engagement with the genome. Cell 151: 994-1004. doi: 10.1016/j.cell.2012.09.045
-
(2012)
Cell
, vol.151
, pp. 994-1004
-
-
Soufi, A.1
Donahue, G.2
Zaret, K.S.3
-
75
-
-
84899850707
-
Phenotypes of Th lineages generated by the commonly used activation with anti-CD3/CD28 antibodies differ from those generated by the physiological activation with the specific antigen
-
Tan C, Wei L, Vistica BP, Shi G, Wawrousek EF, Gery I. 2014. Phenotypes of Th lineages generated by the commonly used activation with anti-CD3/CD28 antibodies differ from those generated by the physiological activation with the specific antigen. Cellular & Molecular Immunology 11: 305-313. doi: 10.1038/cmi.2014.8
-
(2014)
Cellular & Molecular Immunology
, vol.11
, pp. 305-313
-
-
Tan, C.1
Wei, L.2
Vistica, B.P.3
Shi, G.4
Wawrousek, E.F.5
Gery, I.6
-
76
-
-
84951019738
-
Meta-and orthogonal integration of influenza "OMICs" data defines a role for UBR4 in virus budding
-
Tripathi S, Pohl MO, Zhou Y, Rodriguez-Frandsen A, Wang G, Stein DA, Moulton HM, DeJesus P, Che J, Mulder LC, Yángüez E, Andenmatten D, Pache L, Manicassamy B, Albrecht RA, Gonzalez MG, Nguyen Q, Brass A, Elledge S, White M, et al. 2015. Meta-and orthogonal integration of influenza "OMICs" data defines a role for UBR4 in virus budding. Cell Host & Microbe 18: 723-735. doi: 10.1016/j.chom.2015.11.002
-
(2015)
Cell Host & Microbe
, vol.18
, pp. 723-735
-
-
Tripathi, S.1
Pohl, M.O.2
Zhou, Y.3
Rodriguez-Frandsen, A.4
Wang, G.5
Stein, D.A.6
Moulton, H.M.7
DeJesus, P.8
Che, J.9
Mulder, L.C.10
Yángüez, E.11
Andenmatten, D.12
Pache, L.13
Manicassamy, B.14
Albrecht, R.A.15
Gonzalez, M.G.16
Nguyen, Q.17
Brass, A.18
Elledge, S.19
White, M.20
more..
-
77
-
-
80155123782
-
Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration
-
Trompouki E, Bowman TV, Lawton LN, Fan ZP, Wu DC, DiBiase A, Martin CS, Cech JN, Sessa AK, Leblanc JL, Li P, Durand EM, Mosimann C, Heffner GC, Daley GQ, Paulson RF, Young RA, Zon LI. 2011. Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration. Cell 147: 577-589. doi: 10.1016/j.cell.2011.09.044
-
(2011)
Cell
, vol.147
, pp. 577-589
-
-
Trompouki, E.1
Bowman, T.V.2
Lawton, L.N.3
Fan, Z.P.4
Wu, D.C.5
DiBiase, A.6
Martin, C.S.7
Cech, J.N.8
Sessa, A.K.9
Leblanc, J.L.10
Li, P.11
Durand, E.M.12
Mosimann, C.13
Heffner, G.C.14
Daley, G.Q.15
Paulson, R.F.16
Young, R.A.17
Zon, L.I.18
-
78
-
-
84877710866
-
Single naive CD4+ T cells from a diverse repertoire produce different effector cell types during infection
-
Tubo NJ, Pagán AJ, Taylor JJ, Nelson RW, Linehan JL, Ertelt JM, Huseby ES, Way SS, Jenkins MK. 2013. Single naive CD4+ T cells from a diverse repertoire produce different effector cell types during infection. Cell 153: 785-796. doi: 10.1016/j.cell.2013.04.007
-
(2013)
Cell
, vol.153
, pp. 785-796
-
-
Tubo, N.J.1
Pagán, A.J.2
Taylor, J.J.3
Nelson, R.W.4
Linehan, J.L.5
Ertelt, J.M.6
Huseby, E.S.7
Way, S.S.8
Jenkins, M.K.9
-
79
-
-
84870027825
-
STATs shape the active enhancer landscape of T cell populations
-
Vahedi G, Takahashi H, Nakayamada S, Sun HW, Sartorelli V, Kanno Y, O’Shea JJ. 2012. STATs shape the active enhancer landscape of T cell populations. Cell 151: 981-993. doi: 10.1016/j.cell.2012.09.044
-
(2012)
Cell
, vol.151
, pp. 981-993
-
-
Vahedi, G.1
Takahashi, H.2
Nakayamada, S.3
Sun, H.W.4
Sartorelli, V.5
Kanno, Y.6
O’Shea, J.J.7
-
80
-
-
84979588074
-
T cell receptor microclusters are platforms for ligand discrimination
-
Whistler, British Columbia, Canada
-
Varma RC, Padhan K, Muller J. 2013. T cell receptor microclusters are platforms for ligand discrimination. Keystone Symposium on Advances in the Knowledge and Treatment of Autoimmunity. Whistler, British Columbia, Canada. 4-9.
-
(2013)
Keystone Symposium on Advances in the Knowledge and Treatment of Autoimmunity
, pp. 4-9
-
-
Varma, R.C.1
Padhan, K.2
Muller, J.3
-
81
-
-
84904286464
-
Mek inhibition, alone or in combination with BRAF inhibition, affects multiple functions of isolated normal human lymphocytes and dendritic cells
-
Vella LJ, Pasam A, Dimopoulos N, Andrews M, Knights A, Puaux AL, Louahed J, Chen W, Woods K, Cebon JS. 2014. Mek inhibition, alone or in combination with BRAF inhibition, affects multiple functions of isolated normal human lymphocytes and dendritic cells. Cancer Immunology Research 2: 351-360. doi: 10.1158/2326-6066.CIR-13-0181
-
(2014)
Cancer Immunology Research
, vol.2
, pp. 351-360
-
-
Vella, L.J.1
Pasam, A.2
Dimopoulos, N.3
Andrews, M.4
Knights, A.5
Puaux, A.L.6
Louahed, J.7
Chen, W.8
Woods, K.9
Cebon, J.S.10
-
83
-
-
80054789260
-
A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq
-
Wang L, Si Y, Dedow LK, Shao Y, Liu P, Brutnell TP. 2011. A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq. PloS One 6: e26426. doi: 10.1371/journal.pone.0026426
-
(2011)
PloS One
, vol.6
-
-
Wang, L.1
Si, Y.2
Dedow, L.K.3
Shao, Y.4
Liu, P.5
Brutnell, T.P.6
-
84
-
-
84866562625
-
Metabolic checkpoints in activated T cells
-
Wang R, Green DR. 2012. Metabolic checkpoints in activated T cells. Nature Immunology 13: 907-915. doi: 10.1038/ni.2386
-
(2012)
Nature Immunology
, vol.13
, pp. 907-915
-
-
Wang, R.1
Green, D.R.2
-
85
-
-
84859434861
-
TCR-mediated Erk activation does not depend on Sos and Grb2 in peripheral human T cells
-
Warnecke N, Poltorak M, Kowtharapu BS, Arndt B, Stone JC, Schraven B, Simeoni L. 2012. TCR-mediated Erk activation does not depend on Sos and Grb2 in peripheral human T cells. EMBO Reports 13: 386-391. doi: 10.1038/embor.2012.17
-
(2012)
EMBO Reports
, vol.13
, pp. 386-391
-
-
Warnecke, N.1
Poltorak, M.2
Kowtharapu, B.S.3
Arndt, B.4
Stone, J.C.5
Schraven, B.6
Simeoni, L.7
-
86
-
-
58149214356
-
Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells
-
Wei G, Wei L, Zhu J, Zang C, Hu-Li J, Yao Z, Cui K, Kanno Y, Roh TY, Watford WT, Schones DE, Peng W, Sun HW, Paul WE, O’Shea JJ, Zhao K. 2009. Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity 30: 155-167. doi: 10.1016/j.immuni.2008.12.009
-
(2009)
Immunity
, vol.30
, pp. 155-167
-
-
Wei, G.1
Wei, L.2
Zhu, J.3
Zang, C.4
Hu-Li, J.5
Yao, Z.6
Cui, K.7
Kanno, Y.8
Roh, T.Y.9
Watford, W.T.10
Schones, D.E.11
Peng, W.12
Sun, H.W.13
Paul, W.E.14
O’Shea, J.J.15
Zhao, K.16
-
87
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte WA, Orlando DA, Hnisz D, Abraham BJ, Lin CY, Kagey MH, Rahl PB, Lee TI, Young RA. 2013. Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153: 307-319. doi: 10.1016/j.cell.2013.03.035
-
(2013)
Cell
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
-
88
-
-
78650947473
-
Interplay of transcription factors in T-cell differentiation and function: The role of Runx
-
Wong WF, Kohu K, Chiba T, Sato T, Satake M. 2011. Interplay of transcription factors in T-cell differentiation and function: the role of Runx. Immunology 132: 157-164. doi: 10.1111/j.1365-2567.2010.03381.x
-
(2011)
Immunology
, vol.132
, pp. 157-164
-
-
Wong, W.F.1
Kohu, K.2
Chiba, T.3
Sato, T.4
Satake, M.5
-
89
-
-
84859157183
-
Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity
-
Zhang JA, Mortazavi A, Williams BA, Wold BJ, Rothenberg EV. 2012. Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity. Cell 149: 467-482. doi: 10.1016/j.cell.2012.01.056
-
(2012)
Cell
, vol.149
, pp. 467-482
-
-
Zhang, J.A.1
Mortazavi, A.2
Williams, B.A.3
Wold, B.J.4
Rothenberg, E.V.5
-
90
-
-
84903537320
-
The clinical development of MEK inhibitors
-
Zhao Y, Adjei AA. 2014. The clinical development of MEK inhibitors. Nature Reviews. Clinical Oncology 11: 385-400. doi: 10.1038/nrclinonc.2014.83
-
(2014)
Nature Reviews. Clinical Oncology
, vol.11
, pp. 385-400
-
-
Zhao, Y.1
Adjei, A.A.2
-
91
-
-
65549115862
-
Plasticity of CD4+ T cell lineage differentiation
-
Zhou L, Chong MM, Littman DR. 2009. Plasticity of CD4+ T cell lineage differentiation. Immunity 30: 646-655. doi: 10.1016/j.immuni.2009.05.001
-
(2009)
Immunity
, vol.30
, pp. 646-655
-
-
Zhou, L.1
Chong, M.M.2
Littman, D.R.3
-
92
-
-
84922260071
-
The role of T cell receptor signaling thresholds in guiding T cell fate decisions
-
Zikherman J, Au-Yeung B. 2015. The role of T cell receptor signaling thresholds in guiding T cell fate decisions. Current Opinion in Immunology 33: 43-48. doi: 10.1016/j.coi.2015.01.012
-
(2015)
Current Opinion in Immunology
, vol.33
, pp. 43-48
-
-
Zikherman, J.1
Au-Yeung, B.2
|