-
1
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Consortium TEP (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57–74
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
2
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
Roadmap Epigenomics C, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J et al (2015) Integrative analysis of 111 reference human epigenomes. Nature 518: 317–330
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Roadmap Epigenomics, C.1
Kundaje, A.2
Meuleman, W.3
Ernst, J.4
Bilenky, M.5
Yen, A.6
Heravi-Moussavi, A.7
Kheradpour, P.8
Zhang, Z.9
Wang, J.10
-
3
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B et al (2012) The accessible chromatin landscape of the human genome. Nature 489: 75–82
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
-
4
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F et al (2012) Landscape of transcription in human cells. Nature 489: 101–108
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
Lin, W.9
Schlesinger, F.10
-
5
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W et al (2001) Initial sequencing and analysis of the human genome. Nature 409: 860–921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
6
-
-
70349318211
-
The impact of retrotransposons on human genome evolution
-
Cordaux R, Batzer MA (2009) The impact of retrotransposons on human genome evolution. Nat Rev Genet 10: 691–703
-
(2009)
Nat Rev Genet
, vol.10
, pp. 691-703
-
-
Cordaux, R.1
Batzer, M.A.2
-
7
-
-
1542513556
-
Mobile elements: drivers of genome evolution
-
Kazazian HH Jr (2004) Mobile elements: drivers of genome evolution. Science 303: 1626–1632
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian, H.H.1
-
8
-
-
52949095077
-
Retrotransposons revisited: the restraint and rehabilitation of parasites
-
Goodier JL, Kazazian HH (2008) Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135: 23–35
-
(2008)
Cell
, vol.135
, pp. 23-35
-
-
Goodier, J.L.1
Kazazian, H.H.2
-
9
-
-
0032784908
-
Interspersed repeats and other mementos of transposable elements in mammalian genomes
-
Smit AF (1999) Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr Opin Genet Dev 9: 657–663
-
(1999)
Curr Opin Genet Dev
, vol.9
, pp. 657-663
-
-
Smit, A.F.1
-
10
-
-
0030479536
-
The origin of interspersed repeats in the human genome
-
Smit AF (1996) The origin of interspersed repeats in the human genome. Curr Opin Genet Dev 6: 743–748
-
(1996)
Curr Opin Genet Dev
, vol.6
, pp. 743-748
-
-
Smit, A.F.1
-
11
-
-
84875275808
-
On the immortality of television sets: “function” in the human genome according to the evolution-free gospel of ENCODE
-
Graur D, Zheng Y, Price N, Azevedo RB, Zufall RA, Elhaik E (2013) On the immortality of television sets: “function” in the human genome according to the evolution-free gospel of ENCODE. Genome Biol Evol 5: 578–590
-
(2013)
Genome Biol Evol
, vol.5
, pp. 578-590
-
-
Graur, D.1
Zheng, Y.2
Price, N.3
Azevedo, R.B.4
Zufall, R.A.5
Elhaik, E.6
-
12
-
-
84877749322
-
Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong?
-
de Souza FS, Franchini LF, Rubinstein M (2013) Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong? Mol Biol Evol 30: 1239–1251
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1239-1251
-
-
de Souza, F.S.1
Franchini, L.F.2
Rubinstein, M.3
-
13
-
-
84872861423
-
Can ENCODE tell us how much junk DNA we carry in our genome?
-
Niu D-K, Jiang L (2013) Can ENCODE tell us how much junk DNA we carry in our genome? Biochem Biophys Res Commun 430: 1340–1343
-
(2013)
Biochem Biophys Res Commun
, vol.430
, pp. 1340-1343
-
-
Niu, D.-K.1
Jiang, L.2
-
14
-
-
84875847924
-
Is junk DNA bunk? A critique of ENCODE
-
Doolittle WF (2013) Is junk DNA bunk? A critique of ENCODE. Proc Natl Acad Sci USA 110: 5294–5300
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 5294-5300
-
-
Doolittle, W.F.1
-
15
-
-
0031797726
-
Human-specific integrations of the HERV-K endogenous retrovirus family
-
Medstrand P, Mager DL (1998) Human-specific integrations of the HERV-K endogenous retrovirus family. J Virol 72: 9782–9787
-
(1998)
J Virol
, vol.72
, pp. 9782-9787
-
-
Medstrand, P.1
Mager, D.L.2
-
16
-
-
84888642291
-
Differential L1 regulation in pluripotent stem cells of humans and apes
-
Marchetto MC, Narvaiza I, Denli AM, Benner C, Lazzarini TA, Nathanson JL, Paquola AC, Desai KN, Herai RH, Weitzman MD et al (2013) Differential L1 regulation in pluripotent stem cells of humans and apes. Nature 503: 525–529
-
(2013)
Nature
, vol.503
, pp. 525-529
-
-
Marchetto, M.C.1
Narvaiza, I.2
Denli, A.M.3
Benner, C.4
Lazzarini, T.A.5
Nathanson, J.L.6
Paquola, A.C.7
Desai, K.N.8
Herai, R.H.9
Weitzman, M.D.10
-
17
-
-
62549132449
-
A unified classification system for eukaryotic transposable elements should reflect their phylogeny
-
Seberg O, Petersen G (2009) A unified classification system for eukaryotic transposable elements should reflect their phylogeny. Nat Rev Genet 10: 276
-
(2009)
Nat Rev Genet
, vol.10
, pp. 276
-
-
Seberg, O.1
Petersen, G.2
-
18
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O et al (2007) A unified classification system for eukaryotic transposable elements. Nat Rev Genet 8: 973–982
-
(2007)
Nat Rev Genet
, vol.8
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
-
19
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J (2005) Repbase update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110: 462–467
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
20
-
-
84930641238
-
Repbase update, a database of repetitive elements in eukaryotic genomes
-
Bao W, Kojima KK, Kohany O (2015) Repbase update, a database of repetitive elements in eukaryotic genomes. Mob DNA 6: 11
-
(2015)
Mob DNA
, vol.6
, pp. 11
-
-
Bao, W.1
Kojima, K.K.2
Kohany, O.3
-
22
-
-
84976878634
-
The UCSC genome browser database: 2016 update
-
Speir ML, Zweig AS, Rosenbloom KR, Raney BJ, Paten B, Nejad P, Lee BT, Learned K, Karolchik D, Hinrichs AS et al (2016) The UCSC genome browser database: 2016 update. Nucleic Acids Res 44: D717–D725
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D717-D725
-
-
Speir, M.L.1
Zweig, A.S.2
Rosenbloom, K.R.3
Raney, B.J.4
Paten, B.5
Nejad, P.6
Lee, B.T.7
Learned, K.8
Karolchik, D.9
Hinrichs, A.S.10
-
23
-
-
84976871290
-
The Dfam database of repetitive DNA families
-
Hubley R, Finn RD, Clements J, Eddy SR, Jones TA, Bao W, Smit AF, Wheeler TJ (2016) The Dfam database of repetitive DNA families. Nucleic Acids Res 44: D81–D89
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D81-D89
-
-
Hubley, R.1
Finn, R.D.2
Clements, J.3
Eddy, S.R.4
Jones, T.A.5
Bao, W.6
Smit, A.F.7
Wheeler, T.J.8
-
24
-
-
84876581034
-
Dfam: a database of repetitive DNA based on profile hidden Markov models
-
Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD (2013) Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Res 41: D70–D82
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D70-D82
-
-
Wheeler, T.J.1
Clements, J.2
Eddy, S.R.3
Hubley, R.4
Jones, T.A.5
Jurka, J.6
Smit, A.F.7
Finn, R.D.8
-
25
-
-
79952100303
-
Dynamic control of endogenous retroviruses during development
-
Rowe HM, Trono D (2011) Dynamic control of endogenous retroviruses during development. Virology 411: 273–287
-
(2011)
Virology
, vol.411
, pp. 273-287
-
-
Rowe, H.M.1
Trono, D.2
-
26
-
-
0029938821
-
The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences
-
Lower R, Lower J, Kurth R (1996) The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences. Proc Natl Acad Sci USA 93: 5177–5184
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 5177-5184
-
-
Lower, R.1
Lower, J.2
Kurth, R.3
-
27
-
-
58149507192
-
Effects of retroviruses on host genome function
-
Jern P, Coffin JM (2008) Effects of retroviruses on host genome function. Ann Rev Genet 42: 709–732
-
(2008)
Ann Rev Genet
, vol.42
, pp. 709-732
-
-
Jern, P.1
Coffin, J.M.2
-
28
-
-
33750214531
-
The discovery of endogenous retroviruses
-
Weiss RA (2006) The discovery of endogenous retroviruses. Retrovirology 3: 67
-
(2006)
Retrovirology
, vol.3
, pp. 67
-
-
Weiss, R.A.1
-
29
-
-
84858429240
-
Endogenous viruses: insights into viral evolution and impact on host biology
-
Feschotte C, Gilbert C (2012) Endogenous viruses: insights into viral evolution and impact on host biology. Nat Rev Genet 13: 283–296
-
(2012)
Nat Rev Genet
, vol.13
, pp. 283-296
-
-
Feschotte, C.1
Gilbert, C.2
-
30
-
-
0021686762
-
Identification of a retrovirus-like repetitive element in human DNA
-
Mager DL, Henthorn PS (1984) Identification of a retrovirus-like repetitive element in human DNA. Proc Natl Acad Sci USA 81: 7510–7514
-
(1984)
Proc Natl Acad Sci USA
, vol.81
, pp. 7510-7514
-
-
Mager, D.L.1
Henthorn, P.S.2
-
31
-
-
77954100084
-
Transposable elements have rewired the core regulatory network of human embryonic stem cells
-
Kunarso G, Chia NY, Jeyakani J, Hwang C, Lu X, Chan YS, Ng HH, Bourque G (2010) Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 42: 631–634
-
(2010)
Nat Genet
, vol.42
, pp. 631-634
-
-
Kunarso, G.1
Chia, N.Y.2
Jeyakani, J.3
Hwang, C.4
Lu, X.5
Chan, Y.S.6
Ng, H.H.7
Bourque, G.8
-
32
-
-
84960194716
-
Regulatory evolution of innate immunity through co-option of endogenous retroviruses
-
Chuong EB, Elde NC, Feschotte C (2016) Regulatory evolution of innate immunity through co-option of endogenous retroviruses. Science 351: 1083–1087
-
(2016)
Science
, vol.351
, pp. 1083-1087
-
-
Chuong, E.B.1
Elde, N.C.2
Feschotte, C.3
-
33
-
-
84874663519
-
Endogenous retroviruses function as species-specific enhancer elements in the placenta
-
Chuong EB, Rumi MA, Soares MJ, Baker JC (2013) Endogenous retroviruses function as species-specific enhancer elements in the placenta. Nat Genet 45: 325–329
-
(2013)
Nat Genet
, vol.45
, pp. 325-329
-
-
Chuong, E.B.1
Rumi, M.A.2
Soares, M.J.3
Baker, J.C.4
-
34
-
-
0037047398
-
LINE drive. Retrotransposition and genome instability
-
Kazazian HH Jr, Goodier JL (2002) LINE drive. Retrotransposition and genome instability. Cell 110: 277–280
-
(2002)
Cell
, vol.110
, pp. 277-280
-
-
Kazazian, H.H.1
Goodier, J.L.2
-
35
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
Feng Q, Moran JV, Kazazian HH Jr, Boeke JD (1996) Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87: 905–916
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian, H.H.3
Boeke, J.D.4
-
36
-
-
0026428975
-
Reverse transcriptase encoded by a human transposable element
-
Mathias SL, Scott AF, Kazazian HH Jr, Boeke JD, Gabriel A (1991) Reverse transcriptase encoded by a human transposable element. Science 254: 1808–1810
-
(1991)
Science
, vol.254
, pp. 1808-1810
-
-
Mathias, S.L.1
Scott, A.F.2
Kazazian, H.H.3
Boeke, J.D.4
Gabriel, A.5
-
37
-
-
0023429458
-
Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequence
-
Scott AF, Schmeckpeper BJ, Abdelrazik M, Comey CT, O'Hara B, Rossiter JP, Cooley T, Heath P, Smith KD, Margolet L (1987) Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequence. Genomics 1: 113–125
-
(1987)
Genomics
, vol.1
, pp. 113-125
-
-
Scott, A.F.1
Schmeckpeper, B.J.2
Abdelrazik, M.3
Comey, C.T.4
O'Hara, B.5
Rossiter, J.P.6
Cooley, T.7
Heath, P.8
Smith, K.D.9
Margolet, L.10
-
38
-
-
84951778331
-
Primate-specific ORF0 contributes to retrotransposon-mediated diversity
-
Denli AM, Narvaiza I, Kerman BE, Pena M, Benner C, Marchetto MC, Diedrich JK, Aslanian A, Ma J, Moresco JJ et al (2015) Primate-specific ORF0 contributes to retrotransposon-mediated diversity. Cell 163: 583–593
-
(2015)
Cell
, vol.163
, pp. 583-593
-
-
Denli, A.M.1
Narvaiza, I.2
Kerman, B.E.3
Pena, M.4
Benner, C.5
Marchetto, M.C.6
Diedrich, J.K.7
Aslanian, A.8
Ma, J.9
Moresco, J.J.10
-
40
-
-
0034999474
-
Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes
-
Speek M (2001) Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Mol Cell Biol 21: 1973–1985
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1973-1985
-
-
Speek, M.1
-
41
-
-
0025223152
-
Identification, characterization, and cell specificity of a human LINE-1 promoter
-
Swergold GD (1990) Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol Cell Biol 10: 6718–6729
-
(1990)
Mol Cell Biol
, vol.10
, pp. 6718-6729
-
-
Swergold, G.D.1
-
42
-
-
78751550533
-
Epigenetic control of retrotransposon expression in human embryonic stem cells
-
Macia A, Munoz-Lopez M, Cortes JL, Hastings RK, Morell S, Lucena-Aguilar G, Marchal JA, Badge RM, Garcia-Perez JL (2011) Epigenetic control of retrotransposon expression in human embryonic stem cells. Mol Cell Biol 31: 300–316
-
(2011)
Mol Cell Biol
, vol.31
, pp. 300-316
-
-
Macia, A.1
Munoz-Lopez, M.2
Cortes, J.L.3
Hastings, R.K.4
Morell, S.5
Lucena-Aguilar, G.6
Marchal, J.A.7
Badge, R.M.8
Garcia-Perez, J.L.9
-
44
-
-
0036250811
-
Alu repeats and human genomic diversity
-
Batzer MA, Deininger PL (2002) Alu repeats and human genomic diversity. Nat Rev Genet 3: 370–379
-
(2002)
Nat Rev Genet
, vol.3
, pp. 370-379
-
-
Batzer, M.A.1
Deininger, P.L.2
-
45
-
-
0021127698
-
Alu sequences are processed 7SL RNA genes
-
Ullu E, Tschudi C (1984) Alu sequences are processed 7SL RNA genes. Nature 312: 171–172
-
(1984)
Nature
, vol.312
, pp. 171-172
-
-
Ullu, E.1
Tschudi, C.2
-
46
-
-
0018670426
-
A ubiquitous family of repeated DNA sequences in the human genome
-
Houck CM, Rinehart FP, Schmid CW (1979) A ubiquitous family of repeated DNA sequences in the human genome. J Mol Biol 132: 289–306
-
(1979)
J Mol Biol
, vol.132
, pp. 289-306
-
-
Houck, C.M.1
Rinehart, F.P.2
Schmid, C.W.3
-
47
-
-
0031593205
-
SINEs and LINEs share common 3′ sequences: a review
-
Okada N, Hamada M, Ogiwara I, Ohshima K (1997) SINEs and LINEs share common 3′ sequences: a review. Gene 205: 229–243
-
(1997)
Gene
, vol.205
, pp. 229-243
-
-
Okada, N.1
Hamada, M.2
Ogiwara, I.3
Ohshima, K.4
-
48
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux M, Esnault C, Heidmann T (2003) LINE-mediated retrotransposition of marked Alu sequences. Nat Genet 35: 41–48
-
(2003)
Nat Genet
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
49
-
-
0345636604
-
SVA elements are nonautonomous retrotransposons that cause disease in humans
-
Ostertag EM, Goodier JL, Zhang Y, Kazazian HH (2003) SVA elements are nonautonomous retrotransposons that cause disease in humans. Am J Hum Genet 73: 1444–1451
-
(2003)
Am J Hum Genet
, vol.73
, pp. 1444-1451
-
-
Ostertag, E.M.1
Goodier, J.L.2
Zhang, Y.3
Kazazian, H.H.4
-
50
-
-
0028246851
-
Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region. Molecular cloning, exon-intron structure, composite retroposon, and breakpoint of gene duplication
-
Shen L, Wu LC, Sanlioglu S, Chen R, Mendoza AR, Dangel AW, Carroll MC, Zipf WB, Yu CY (1994) Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region. Molecular cloning, exon-intron structure, composite retroposon, and breakpoint of gene duplication. J Biol Chem 269: 8466–8476
-
(1994)
J Biol Chem
, vol.269
, pp. 8466-8476
-
-
Shen, L.1
Wu, L.C.2
Sanlioglu, S.3
Chen, R.4
Mendoza, A.R.5
Dangel, A.W.6
Carroll, M.C.7
Zipf, W.B.8
Yu, C.Y.9
-
51
-
-
28444448708
-
SVA elements: a hominid-specific retroposon family
-
Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA (2005) SVA elements: a hominid-specific retroposon family. J Mol Biol 354: 994–1007
-
(2005)
J Mol Biol
, vol.354
, pp. 994-1007
-
-
Wang, H.1
Xing, J.2
Grover, D.3
Hedges, D.J.4
Han, K.5
Walker, J.A.6
Batzer, M.A.7
-
52
-
-
84922971647
-
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
-
Jacobs FM, Greenberg D, Nguyen N, Haeussler M, Ewing AD, Katzman S, Paten B, Salama SR, Haussler D (2014) An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons. Nature 516: 242–245
-
(2014)
Nature
, vol.516
, pp. 242-245
-
-
Jacobs, F.M.1
Greenberg, D.2
Nguyen, N.3
Haeussler, M.4
Ewing, A.D.5
Katzman, S.6
Paten, B.7
Salama, S.R.8
Haussler, D.9
-
53
-
-
74549116659
-
KAP1 controls endogenous retroviruses in embryonic stem cells
-
Rowe HM, Jakobsson J, Mesnard D, Rougemont J, Reynard S, Aktas T, Maillard PV, Layard-Liesching H, Verp S, Marquis J et al (2010) KAP1 controls endogenous retroviruses in embryonic stem cells. Nature 463: 237–240
-
(2010)
Nature
, vol.463
, pp. 237-240
-
-
Rowe, H.M.1
Jakobsson, J.2
Mesnard, D.3
Rougemont, J.4
Reynard, S.5
Aktas, T.6
Maillard, P.V.7
Layard-Liesching, H.8
Verp, S.9
Marquis, J.10
-
54
-
-
84868146548
-
The KRAB-ZFP/KAP1 system contributes to the early embryonic establishment of site-specific DNA methylation patterns maintained during development
-
Quenneville S, Turelli P, Bojkowska K, Raclot C, Offner S, Kapopoulou A, Trono D (2012) The KRAB-ZFP/KAP1 system contributes to the early embryonic establishment of site-specific DNA methylation patterns maintained during development. Cell Rep 2: 766–773
-
(2012)
Cell Rep
, vol.2
, pp. 766-773
-
-
Quenneville, S.1
Turelli, P.2
Bojkowska, K.3
Raclot, C.4
Offner, S.5
Kapopoulou, A.6
Trono, D.7
-
55
-
-
84929152789
-
C2H2 zinc finger proteins greatly expand the human regulatory lexicon
-
Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM et al (2015) C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nat Biotechnol 33: 555–562
-
(2015)
Nat Biotechnol
, vol.33
, pp. 555-562
-
-
Najafabadi, H.S.1
Mnaimneh, S.2
Schmitges, F.W.3
Garton, M.4
Lam, K.N.5
Yang, A.6
Albu, M.7
Weirauch, M.T.8
Radovani, E.9
Kim, P.M.10
-
56
-
-
84872088060
-
De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET
-
Rowe HM, Friedli M, Offner S, Verp S, Mesnard D, Marquis J, Aktas T, Trono D (2013) De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET. Development 140: 519–529
-
(2013)
Development
, vol.140
, pp. 519-529
-
-
Rowe, H.M.1
Friedli, M.2
Offner, S.3
Verp, S.4
Mesnard, D.5
Marquis, J.6
Aktas, T.7
Trono, D.8
-
57
-
-
77958130019
-
Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes
-
Nowick K, Hamilton AT, Zhang H, Stubbs L (2010) Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes. Mol Biol Evol 27: 2606–2617
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2606-2617
-
-
Nowick, K.1
Hamilton, A.T.2
Zhang, H.3
Stubbs, L.4
-
58
-
-
84924666261
-
The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses
-
Wolf G, Yang P, Fuchtbauer AC, Fuchtbauer EM, Silva AM, Park C, Wu W, Nielsen AL, Pedersen FS, Macfarlan TS (2015) The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses. Genes Dev 29: 538–554
-
(2015)
Genes Dev
, vol.29
, pp. 538-554
-
-
Wolf, G.1
Yang, P.2
Fuchtbauer, A.C.3
Fuchtbauer, E.M.4
Silva, A.M.5
Park, C.6
Wu, W.7
Nielsen, A.L.8
Pedersen, F.S.9
Macfarlan, T.S.10
-
59
-
-
67349170854
-
Embryonic stem cells use ZFP809 to silence retroviral DNAs
-
Wolf D, Goff SP (2009) Embryonic stem cells use ZFP809 to silence retroviral DNAs. Nature 458: 1201–1204
-
(2009)
Nature
, vol.458
, pp. 1201-1204
-
-
Wolf, D.1
Goff, S.P.2
-
60
-
-
84903761124
-
Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements
-
Turelli P, Castro-Diaz N, Marzetta F, Kapopoulou A, Raclot C, Duc J, Tieng V, Quenneville S, Trono D (2014) Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements. Genome Res 24: 1260–1270
-
(2014)
Genome Res
, vol.24
, pp. 1260-1270
-
-
Turelli, P.1
Castro-Diaz, N.2
Marzetta, F.3
Kapopoulou, A.4
Raclot, C.5
Duc, J.6
Tieng, V.7
Quenneville, S.8
Trono, D.9
-
61
-
-
84903791369
-
piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells
-
Pezic D, Manakov SA, Sachidanandam R, Aravin AA (2014) piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells. Genes Dev 28: 1410–1428
-
(2014)
Genes Dev
, vol.28
, pp. 1410-1428
-
-
Pezic, D.1
Manakov, S.A.2
Sachidanandam, R.3
Aravin, A.A.4
-
62
-
-
77950862656
-
Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET
-
Matsui T, Leung D, Miyashita H, Maksakova IA, Miyachi H, Kimura H, Tachibana M, Lorincz MC, Shinkai Y (2010) Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET. Nature 464: 927–931
-
(2010)
Nature
, vol.464
, pp. 927-931
-
-
Matsui, T.1
Leung, D.2
Miyashita, H.3
Maksakova, I.A.4
Miyachi, H.5
Kimura, H.6
Tachibana, M.7
Lorincz, M.C.8
Shinkai, Y.9
-
63
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
Martens JH, O'Sullivan RJ, Braunschweig U, Opravil S, Radolf M, Steinlein P, Jenuwein T (2005) The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J 24: 800–812
-
(2005)
EMBO J
, vol.24
, pp. 800-812
-
-
Martens, J.H.1
O'Sullivan, R.J.2
Braunschweig, U.3
Opravil, S.4
Radolf, M.5
Steinlein, P.6
Jenuwein, T.7
-
64
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP et al (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448: 553–560
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
-
65
-
-
84875226981
-
Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA
-
Fadloun A, Le Gras S, Jost B, Ziegler-Birling C, Takahashi H, Gorab E, Carninci P, Torres-Padilla ME (2013) Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA. Nat Struct Mol Biol 20: 332–338
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 332-338
-
-
Fadloun, A.1
Le Gras, S.2
Jost, B.3
Ziegler-Birling, C.4
Takahashi, H.5
Gorab, E.6
Carninci, P.7
Torres-Padilla, M.E.8
-
66
-
-
84945472619
-
Systematic identification of factors for provirus silencing in embryonic stem cells
-
Yang BX, El Farran CA, Guo HC, Yu T, Fang HT, Wang HF, Schlesinger S, Seah YF, Goh GY, Neo SP et al (2015) Systematic identification of factors for provirus silencing in embryonic stem cells. Cell 163: 230–245
-
(2015)
Cell
, vol.163
, pp. 230-245
-
-
Yang, B.X.1
El Farran, C.A.2
Guo, H.C.3
Yu, T.4
Fang, H.T.5
Wang, H.F.6
Schlesinger, S.7
Seah, Y.F.8
Goh, G.Y.9
Neo, S.P.10
-
67
-
-
84903782130
-
Evolutionally dynamic L1 regulation in embryonic stem cells
-
Castro-Diaz N, Ecco G, Coluccio A, Kapopoulou A, Yazdanpanah B, Friedli M, Duc J, Jang SM, Turelli P, Trono D (2014) Evolutionally dynamic L1 regulation in embryonic stem cells. Genes Dev 28: 1397–1409
-
(2014)
Genes Dev
, vol.28
, pp. 1397-1409
-
-
Castro-Diaz, N.1
Ecco, G.2
Coluccio, A.3
Kapopoulou, A.4
Yazdanpanah, B.5
Friedli, M.6
Duc, J.7
Jang, S.M.8
Turelli, P.9
Trono, D.10
-
68
-
-
0031662164
-
Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
-
Walsh CP, Chaillet JR, Bestor TH (1998) Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet 20: 116–117
-
(1998)
Nat Genet
, vol.20
, pp. 116-117
-
-
Walsh, C.P.1
Chaillet, J.R.2
Bestor, T.H.3
-
69
-
-
84905052378
-
DNA methylation dynamics of the human preimplantation embryo
-
Smith ZD, Chan MM, Humm KC, Karnik R, Mekhoubad S, Regev A, Eggan K, Meissner A (2014) DNA methylation dynamics of the human preimplantation embryo. Nature 511: 611–615
-
(2014)
Nature
, vol.511
, pp. 611-615
-
-
Smith, Z.D.1
Chan, M.M.2
Humm, K.C.3
Karnik, R.4
Mekhoubad, S.5
Regev, A.6
Eggan, K.7
Meissner, A.8
-
70
-
-
84905030212
-
The DNA methylation landscape of human early embryos
-
Guo H, Zhu P, Yan L, Li R, Hu B, Lian Y, Yan J, Ren X, Lin S, Li J et al (2014) The DNA methylation landscape of human early embryos. Nature 511: 606–610
-
(2014)
Nature
, vol.511
, pp. 606-610
-
-
Guo, H.1
Zhu, P.2
Yan, L.3
Li, R.4
Hu, B.5
Lian, Y.6
Yan, J.7
Ren, X.8
Lin, S.9
Li, J.10
-
71
-
-
84947239885
-
The developmental control of transposable elements and the evolution of higher species
-
Friedli M, Trono D (2015) The developmental control of transposable elements and the evolution of higher species. Annu Rev Cell Dev Biol 31: 429–451
-
(2015)
Annu Rev Cell Dev Biol
, vol.31
, pp. 429-451
-
-
Friedli, M.1
Trono, D.2
-
72
-
-
84858770341
-
Trim28 is required for epigenetic stability during mouse oocyte to embryo transition
-
Messerschmidt DM, de Vries W, Ito M, Solter D, Ferguson-Smith A, Knowles BB (2012) Trim28 is required for epigenetic stability during mouse oocyte to embryo transition. Science 335: 1499–1502
-
(2012)
Science
, vol.335
, pp. 1499-1502
-
-
Messerschmidt, D.M.1
de Vries, W.2
Ito, M.3
Solter, D.4
Ferguson-Smith, A.5
Knowles, B.B.6
-
73
-
-
37849034877
-
Exonization of active mouse L1s: a driver of transcriptome evolution?
-
Zemojtel T, Penzkofer T, Schultz J, Dandekar T, Badge R, Vingron M (2007) Exonization of active mouse L1s: a driver of transcriptome evolution? BMC Genom 8: 392
-
(2007)
BMC Genom
, vol.8
, pp. 392
-
-
Zemojtel, T.1
Penzkofer, T.2
Schultz, J.3
Dandekar, T.4
Badge, R.5
Vingron, M.6
-
74
-
-
0036064148
-
Alu-containing exons are alternatively spliced
-
Sorek R, Ast G, Graur D (2002) Alu-containing exons are alternatively spliced. Genome Res 12: 1060–1067
-
(2002)
Genome Res
, vol.12
, pp. 1060-1067
-
-
Sorek, R.1
Ast, G.2
Graur, D.3
-
75
-
-
84957899695
-
Retrotransposons as regulators of gene expression
-
Elbarbary RA, Lucas BA, Maquat LE (2016) Retrotransposons as regulators of gene expression. Science 351: aac7247
-
(2016)
Science
, vol.351
, pp. aac7247
-
-
Elbarbary, R.A.1
Lucas, B.A.2
Maquat, L.E.3
-
76
-
-
84873507928
-
Transposable elements re-wire and fine-tune the transcriptome
-
Cowley M, Oakey RJ (2013) Transposable elements re-wire and fine-tune the transcriptome. PLoS Genet 9: e1003234
-
(2013)
PLoS Genet
, vol.9
-
-
Cowley, M.1
Oakey, R.J.2
-
77
-
-
84874626481
-
TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells
-
Rowe HM, Kapopoulou A, Corsinotti A, Fasching L, Macfarlan TS, Tarabay Y, Viville S, Jakobsson J, Pfaff SL, Trono D (2013) TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells. Genome Res 23: 452–461
-
(2013)
Genome Res
, vol.23
, pp. 452-461
-
-
Rowe, H.M.1
Kapopoulou, A.2
Corsinotti, A.3
Fasching, L.4
Macfarlan, T.S.5
Tarabay, Y.6
Viville, S.7
Jakobsson, J.8
Pfaff, S.L.9
Trono, D.10
-
78
-
-
33746377600
-
Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes
-
Polak P, Domany E (2006) Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes. BMC Genom 7: 133
-
(2006)
BMC Genom
, vol.7
, pp. 133
-
-
Polak, P.1
Domany, E.2
-
79
-
-
84865415008
-
29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome
-
Lowe CB, Haussler D (2012) 29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome. PLoS ONE 7: e43128
-
(2012)
PLoS ONE
, vol.7
-
-
Lowe, C.B.1
Haussler, D.2
-
80
-
-
33646928347
-
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
-
Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D (2006) A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 441: 87–90
-
(2006)
Nature
, vol.441
, pp. 87-90
-
-
Bejerano, G.1
Lowe, C.B.2
Ahituv, N.3
King, B.4
Siepel, A.5
Salama, S.R.6
Rubin, E.M.7
Kent, W.J.8
Haussler, D.9
-
81
-
-
84907217918
-
Noncoding origins of anthropoid traits and a new null model of transposon functionalization
-
del Rosario RC, Rayan NA, Prabhakar S (2014) Noncoding origins of anthropoid traits and a new null model of transposon functionalization. Genome Res 24: 1469–1484
-
(2014)
Genome Res
, vol.24
, pp. 1469-1484
-
-
del Rosario, R.C.1
Rayan, N.A.2
Prabhakar, S.3
-
82
-
-
34249937354
-
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
-
Lowe CB, Bejerano G, Haussler D (2007) Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc Natl Acad Sci USA 104: 8005–8010
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8005-8010
-
-
Lowe, C.B.1
Bejerano, G.2
Haussler, D.3
-
83
-
-
84971455349
-
Long terminal repeats: from parasitic elements to building blocks of the transcriptional regulatory repertoire
-
Thompson PJ, Macfarlan TS, Lorincz MC (2016) Long terminal repeats: from parasitic elements to building blocks of the transcriptional regulatory repertoire. Mol Cell 62: 766–776
-
(2016)
Mol Cell
, vol.62
, pp. 766-776
-
-
Thompson, P.J.1
Macfarlan, T.S.2
Lorincz, M.C.3
-
84
-
-
84971228919
-
Transposable elements in the mammalian embryo: pioneers surviving through stealth and service
-
Gerdes P, Richardson SR, Mager DL, Faulkner GJ (2016) Transposable elements in the mammalian embryo: pioneers surviving through stealth and service. Genome Biol 17: 1
-
(2016)
Genome Biol
, vol.17
, pp. 1
-
-
Gerdes, P.1
Richardson, S.R.2
Mager, D.L.3
Faulkner, G.J.4
-
85
-
-
84867050577
-
Transposable elements: an abundant and natural source of regulatory sequences for host genes
-
Rebollo R, Romanish MT, Mager DL (2012) Transposable elements: an abundant and natural source of regulatory sequences for host genes. Ann Rev Genet 46: 21–42
-
(2012)
Ann Rev Genet
, vol.46
, pp. 21-42
-
-
Rebollo, R.1
Romanish, M.T.2
Mager, D.L.3
-
86
-
-
55549117831
-
Evolution of the mammalian transcription factor binding repertoire via transposable elements
-
Bourque G, Leong B, Vega VB, Chen X, Lee YL, Srinivasan KG, Chew JL, Ruan Y, Wei CL, Ng HH et al (2008) Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res 18: 1752–1762
-
(2008)
Genome Res
, vol.18
, pp. 1752-1762
-
-
Bourque, G.1
Leong, B.2
Vega, V.B.3
Chen, X.4
Lee, Y.L.5
Srinivasan, K.G.6
Chew, J.L.7
Ruan, Y.8
Wei, C.L.9
Ng, H.H.10
-
87
-
-
34248339256
-
Transposable element derived DNaseI-hypersensitive sites in the human genome
-
Marino-Ramirez L, Jordan IK (2006) Transposable element derived DNaseI-hypersensitive sites in the human genome. Biol Direct 1: 20
-
(2006)
Biol Direct
, vol.1
, pp. 20
-
-
Marino-Ramirez, L.1
Jordan, I.K.2
-
88
-
-
84876799419
-
Transposable elements as genetic regulatory substrates in early development
-
Gifford WD, Pfaff SL, Macfarlan TS (2013) Transposable elements as genetic regulatory substrates in early development. Trends Cell Biol 23: 218–226
-
(2013)
Trends Cell Biol
, vol.23
, pp. 218-226
-
-
Gifford, W.D.1
Pfaff, S.L.2
Macfarlan, T.S.3
-
89
-
-
84888236297
-
DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis
-
Young JM, Whiddon JL, Yao Z, Kasinathan B, Snider L, Geng LN, Balog J, Tawil R, van der Maarel SM, Tapscott SJ (2013) DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis. PLoS Genet 9: e1003947
-
(2013)
PLoS Genet
, vol.9
-
-
Young, J.M.1
Whiddon, J.L.2
Yao, Z.3
Kasinathan, B.4
Snider, L.5
Geng, L.N.6
Balog, J.7
Tawil, R.8
van der Maarel, S.M.9
Tapscott, S.J.10
-
90
-
-
84878522936
-
The majority of primate-specific regulatory sequences are derived from transposable elements
-
Jacques PE, Jeyakani J, Bourque G (2013) The majority of primate-specific regulatory sequences are derived from transposable elements. PLoS Genet 9: e1003504
-
(2013)
PLoS Genet
, vol.9
-
-
Jacques, P.E.1
Jeyakani, J.2
Bourque, G.3
-
91
-
-
80051997952
-
Dynamic interactions between transposable elements and their hosts
-
Levin HL, Moran JV (2011) Dynamic interactions between transposable elements and their hosts. Nat Rev Genet 12: 615–627
-
(2011)
Nat Rev Genet
, vol.12
, pp. 615-627
-
-
Levin, H.L.1
Moran, J.V.2
-
92
-
-
80055010534
-
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
-
Lynch VJ, Leclerc RD, May G, Wagner GP (2011) Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Nat Genet 43: 1154–1159
-
(2011)
Nat Genet
, vol.43
, pp. 1154-1159
-
-
Lynch, V.J.1
Leclerc, R.D.2
May, G.3
Wagner, G.P.4
-
93
-
-
0024323778
-
Members of the RTVL-H family of human endogenous retrovirus-like elements are expressed in placenta
-
Johansen T, Holm T, Bjorklid E (1989) Members of the RTVL-H family of human endogenous retrovirus-like elements are expressed in placenta. Gene 79: 259–267
-
(1989)
Gene
, vol.79
, pp. 259-267
-
-
Johansen, T.1
Holm, T.2
Bjorklid, E.3
-
94
-
-
84922820231
-
Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy
-
Lynch VJ, Nnamani MC, Kapusta A, Brayer K, Plaza SL, Mazur EC, Emera D, Sheikh SZ, Grutzner F, Bauersachs S et al (2015) Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy. Cell Rep 10: 551–561
-
(2015)
Cell Rep
, vol.10
, pp. 551-561
-
-
Lynch, V.J.1
Nnamani, M.C.2
Kapusta, A.3
Brayer, K.4
Plaza, S.L.5
Mazur, E.C.6
Emera, D.7
Sheikh, S.Z.8
Grutzner, F.9
Bauersachs, S.10
-
95
-
-
84855278198
-
Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development
-
Göke J, Jung M, Behrens S, Chavez L, O'Keeffe S, Timmermann B, Lehrach H, Adjaye J, Vingron M (2011) Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development. PLoS Comput Biol 7: e1002304
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Göke, J.1
Jung, M.2
Behrens, S.3
Chavez, L.4
O'Keeffe, S.5
Timmermann, B.6
Lehrach, H.7
Adjaye, J.8
Vingron, M.9
-
96
-
-
84924907701
-
Dynamic transcription of distinct classes of endogenous retroviral elements marks specific populations of early human embryonic cells
-
Goke J, Lu X, Chan YS, Ng HH, Ly LH, Sachs F, Szczerbinska I (2015) Dynamic transcription of distinct classes of endogenous retroviral elements marks specific populations of early human embryonic cells. Cell Stem Cell 16: 135–141
-
(2015)
Cell Stem Cell
, vol.16
, pp. 135-141
-
-
Goke, J.1
Lu, X.2
Chan, Y.S.3
Ng, H.H.4
Ly, L.H.5
Sachs, F.6
Szczerbinska, I.7
-
97
-
-
5044251591
-
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos
-
Peaston AE, Evsikov AV, Graber JH, de Vries WN, Holbrook AE, Solter D, Knowles BB (2004) Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Dev Cell 7: 597–606
-
(2004)
Dev Cell
, vol.7
, pp. 597-606
-
-
Peaston, A.E.1
Evsikov, A.V.2
Graber, J.H.3
de Vries, W.N.4
Holbrook, A.E.5
Solter, D.6
Knowles, B.B.7
-
98
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner GJ, Kimura Y, Daub CO, Wani S, Plessy C, Irvine KM, Schroder K, Cloonan N, Steptoe AL, Lassmann T et al (2009) The regulated retrotransposon transcriptome of mammalian cells. Nat Genet 41: 563–571
-
(2009)
Nat Genet
, vol.41
, pp. 563-571
-
-
Faulkner, G.J.1
Kimura, Y.2
Daub, C.O.3
Wani, S.4
Plessy, C.5
Irvine, K.M.6
Schroder, K.7
Cloonan, N.8
Steptoe, A.L.9
Lassmann, T.10
-
99
-
-
84898010302
-
The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
-
Lu X, Sachs F, Ramsay L, Jacques PE, Goke J, Bourque G, Ng HH (2014) The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity. Nat Struct Mol Biol 21: 423–425
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 423-425
-
-
Lu, X.1
Sachs, F.2
Ramsay, L.3
Jacques, P.E.4
Goke, J.5
Bourque, G.6
Ng, H.H.7
-
100
-
-
84901651635
-
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
-
Fort A, Hashimoto K, Yamada D, Salimullah M, Keya CA, Saxena A, Bonetti A, Voineagu I, Bertin N, Kratz A et al (2014) Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance. Nat Genet 46: 558–566
-
(2014)
Nat Genet
, vol.46
, pp. 558-566
-
-
Fort, A.1
Hashimoto, K.2
Yamada, D.3
Salimullah, M.4
Keya, C.A.5
Saxena, A.6
Bonetti, A.7
Voineagu, I.8
Bertin, N.9
Kratz, A.10
-
101
-
-
84876864345
-
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
-
Kapusta A, Kronenberg Z, Lynch VJ, Zhuo X, Ramsay L, Bourque G, Yandell M, Feschotte C (2013) Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet 9: e1003470
-
(2013)
PLoS Genet
, vol.9
-
-
Kapusta, A.1
Kronenberg, Z.2
Lynch, V.J.3
Zhuo, X.4
Ramsay, L.5
Bourque, G.6
Yandell, M.7
Feschotte, C.8
-
102
-
-
84929001104
-
The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans
-
Ardlie KG, Deluca DS, Segrè AV, Sullivan TJ, Young TR, Gelfand ET, Trowbridge CA, Maller JB, Tukiainen T, Lek M (2015) The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans. Science 348: 648–660
-
(2015)
Science
, vol.348
, pp. 648-660
-
-
Ardlie, K.G.1
Deluca, D.S.2
Segrè, A.V.3
Sullivan, T.J.4
Young, T.R.5
Gelfand, E.T.6
Trowbridge, C.A.7
Maller, J.B.8
Tukiainen, T.9
Lek, M.10
-
103
-
-
84929015296
-
Human genomics. The human transcriptome across tissues and individuals
-
Mele M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM, Pervouchine DD, Sullivan TJ et al (2015) Human genomics. The human transcriptome across tissues and individuals. Science 348: 660–665
-
(2015)
Science
, vol.348
, pp. 660-665
-
-
Mele, M.1
Ferreira, P.G.2
Reverter, F.3
DeLuca, D.S.4
Monlong, J.5
Sammeth, M.6
Young, T.R.7
Goldmann, J.M.8
Pervouchine, D.D.9
Sullivan, T.J.10
-
104
-
-
84869881863
-
Transposable elements reveal a stem cell-specific class of long noncoding RNAs
-
Kelley D, Rinn J (2012) Transposable elements reveal a stem cell-specific class of long noncoding RNAs. Genome Biol 13: R107
-
(2012)
Genome Biol
, vol.13
, pp. R107
-
-
Kelley, D.1
Rinn, J.2
-
105
-
-
0035910527
-
Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein CI genes in humans
-
Medstrand P, Landry J-R, Mager DL (2001) Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein CI genes in humans. J Biol Chem 276: 1896–1903
-
(2001)
J Biol Chem
, vol.276
, pp. 1896-1903
-
-
Medstrand, P.1
Landry, J.-R.2
Mager, D.L.3
-
106
-
-
84887865235
-
A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes
-
Flemr M, Malik R, Franke V, Nejepinska J, Sedlacek R, Vlahovicek K, Svoboda P (2013) A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes. Cell 155: 807–816
-
(2013)
Cell
, vol.155
, pp. 807-816
-
-
Flemr, M.1
Malik, R.2
Franke, V.3
Nejepinska, J.4
Sedlacek, R.5
Vlahovicek, K.6
Svoboda, P.7
-
107
-
-
84906688503
-
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
-
Lock FE, Rebollo R, Miceli-Royer K, Gagnier L, Kuah S, Babaian A, Sistiaga-Poveda M, Lai CB, Nemirovsky O, Serrano I et al (2014) Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma. Proc Natl Acad Sci USA 111: E3534–E3543
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. E3534-E3543
-
-
Lock, F.E.1
Rebollo, R.2
Miceli-Royer, K.3
Gagnier, L.4
Kuah, S.5
Babaian, A.6
Sistiaga-Poveda, M.7
Lai, C.B.8
Nemirovsky, O.9
Serrano, I.10
-
108
-
-
0141561907
-
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
-
van de Lagemaat LN, Landry JR, Mager DL, Medstrand P (2003) Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. Trends Genet 19: 530–536
-
(2003)
Trends Genet
, vol.19
, pp. 530-536
-
-
van de Lagemaat, L.N.1
Landry, J.R.2
Mager, D.L.3
Medstrand, P.4
-
109
-
-
70350232064
-
Endogenous retroviral LTRs as promoters for human genes: a critical assessment
-
Cohen CJ, Lock WM, Mager DL (2009) Endogenous retroviral LTRs as promoters for human genes: a critical assessment. Gene 448: 105–114
-
(2009)
Gene
, vol.448
, pp. 105-114
-
-
Cohen, C.J.1
Lock, W.M.2
Mager, D.L.3
-
110
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
-
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG et al (2012) The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 22: 1775–1789
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
-
111
-
-
84924063355
-
The landscape of long noncoding RNAs in the human transcriptome
-
Iyer MK, Niknafs YS, Malik R, Singhal U, Sahu A, Hosono Y, Barrette TR, Prensner JR, Evans JR, Zhao S et al (2015) The landscape of long noncoding RNAs in the human transcriptome. Nat Genet 47: 199–208
-
(2015)
Nat Genet
, vol.47
, pp. 199-208
-
-
Iyer, M.K.1
Niknafs, Y.S.2
Malik, R.3
Singhal, U.4
Sahu, A.5
Hosono, Y.6
Barrette, T.R.7
Prensner, J.R.8
Evans, J.R.9
Zhao, S.10
-
112
-
-
84944077358
-
Comprehensive genomic characterization of long non-coding RNAs across human cancers
-
Yan X, Hu Z, Feng Y, Hu X, Yuan J, Zhao SD, Zhang Y, Yang L, Shan W, He Q et al (2015) Comprehensive genomic characterization of long non-coding RNAs across human cancers. Cancer Cell 28: 529–540
-
(2015)
Cancer Cell
, vol.28
, pp. 529-540
-
-
Yan, X.1
Hu, Z.2
Feng, Y.3
Hu, X.4
Yuan, J.5
Zhao, S.D.6
Zhang, Y.7
Yang, L.8
Shan, W.9
He, Q.10
-
113
-
-
84946196880
-
The emerging role of lncRNAs in cancer
-
Huarte M (2015) The emerging role of lncRNAs in cancer. Nat Med 21: 1253–1261
-
(2015)
Nat Med
, vol.21
, pp. 1253-1261
-
-
Huarte, M.1
-
114
-
-
84861881510
-
BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration
-
Flockhart RJ, Webster DE, Qu K, Mascarenhas N, Kovalski J, Kretz M, Khavari PA (2012) BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration. Genome Res 22: 1006–1014
-
(2012)
Genome Res
, vol.22
, pp. 1006-1014
-
-
Flockhart, R.J.1
Webster, D.E.2
Qu, K.3
Mascarenhas, N.4
Kovalski, J.5
Kretz, M.6
Khavari, P.A.7
-
115
-
-
78649467088
-
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
-
Loewer S, Cabili MN, Guttman M, Loh YH, Thomas K, Park IH, Garber M, Curran M, Onder T, Agarwal S et al (2010) Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat Genet 42: 1113–1117
-
(2010)
Nat Genet
, vol.42
, pp. 1113-1117
-
-
Loewer, S.1
Cabili, M.N.2
Guttman, M.3
Loh, Y.H.4
Thomas, K.5
Park, I.H.6
Garber, M.7
Curran, M.8
Onder, T.9
Agarwal, S.10
-
116
-
-
44449098601
-
UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion
-
Wang F, Li X, Xie X, Zhao L, Chen W (2008) UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion. FEBS Lett 582: 1919–1927
-
(2008)
FEBS Lett
, vol.582
, pp. 1919-1927
-
-
Wang, F.1
Li, X.2
Xie, X.3
Zhao, L.4
Chen, W.5
-
117
-
-
84874645551
-
The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage
-
Zhang A, Zhou N, Huang J, Liu Q, Fukuda K, Ma D, Lu Z, Bai C, Watabe K, Mo YY (2013) The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage. Cell Res 23: 340–350
-
(2013)
Cell Res
, vol.23
, pp. 340-350
-
-
Zhang, A.1
Zhou, N.2
Huang, J.3
Liu, Q.4
Fukuda, K.5
Ma, D.6
Lu, Z.7
Bai, C.8
Watabe, K.9
Mo, Y.Y.10
-
118
-
-
84947976287
-
The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming
-
Durruthy-Durruthy J, Sebastiano V, Wossidlo M, Cepeda D, Cui J, Grow EJ, Davila J, Mall M, Wong WH, Wysocka J et al (2016) The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming. Nat Genet 48: 44–52
-
(2016)
Nat Genet
, vol.48
, pp. 44-52
-
-
Durruthy-Durruthy, J.1
Sebastiano, V.2
Wossidlo, M.3
Cepeda, D.4
Cui, J.5
Grow, E.J.6
Davila, J.7
Mall, M.8
Wong, W.H.9
Wysocka, J.10
-
119
-
-
84961615874
-
Melanoma addiction to the long non-coding RNA SAMMSON
-
Leucci E, Vendramin R, Spinazzi M, Laurette P, Fiers M, Wouters J, Radaelli E, Eyckerman S, Leonelli C, Vanderheyden K et al (2016) Melanoma addiction to the long non-coding RNA SAMMSON. Nature 531: 518–522
-
(2016)
Nature
, vol.531
, pp. 518-522
-
-
Leucci, E.1
Vendramin, R.2
Spinazzi, M.3
Laurette, P.4
Fiers, M.5
Wouters, J.6
Radaelli, E.7
Eyckerman, S.8
Leonelli, C.9
Vanderheyden, K.10
-
120
-
-
84871215627
-
HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency
-
Santoni FA, Guerra J, Luban J (2012) HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency. Retrovirology 9: 111
-
(2012)
Retrovirology
, vol.9
, pp. 111
-
-
Santoni, F.A.1
Guerra, J.2
Luban, J.3
-
121
-
-
84880766910
-
Genome-wide kinase-chromatin interactions reveal the regulatory network of ERK signaling in human embryonic stem cells
-
Goke J, Chan YS, Yan J, Vingron M, Ng HH (2013) Genome-wide kinase-chromatin interactions reveal the regulatory network of ERK signaling in human embryonic stem cells. Mol Cell 50: 844–855
-
(2013)
Mol Cell
, vol.50
, pp. 844-855
-
-
Goke, J.1
Chan, Y.S.2
Yan, J.3
Vingron, M.4
Ng, H.H.5
-
122
-
-
84922115236
-
Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells
-
Wang J, Xie G, Singh M, Ghanbarian AT, Rasko T, Szvetnik A, Cai H, Besser D, Prigione A, Fuchs NV et al (2014) Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells. Nature 516: 405–409
-
(2014)
Nature
, vol.516
, pp. 405-409
-
-
Wang, J.1
Xie, G.2
Singh, M.3
Ghanbarian, A.T.4
Rasko, T.5
Szvetnik, A.6
Cai, H.7
Besser, D.8
Prigione, A.9
Fuchs, N.V.10
-
123
-
-
84906663724
-
Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential
-
Ohnuki M, Tanabe K, Sutou K, Teramoto I, Sawamura Y, Narita M, Nakamura M, Tokunaga Y, Nakamura M, Watanabe A et al (2014) Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential. Proc Natl Acad Sci USA 111: 12426–12431
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 12426-12431
-
-
Ohnuki, M.1
Tanabe, K.2
Sutou, K.3
Teramoto, I.4
Sawamura, Y.5
Narita, M.6
Nakamura, M.7
Tokunaga, Y.8
Nakamura, M.9
Watanabe, A.10
-
124
-
-
84930205085
-
Retrotransposons shape species-specific embryonic stem cell gene expression
-
Robbez-Masson L, Rowe HM (2015) Retrotransposons shape species-specific embryonic stem cell gene expression. Retrovirology 12: 45
-
(2015)
Retrovirology
, vol.12
, pp. 45
-
-
Robbez-Masson, L.1
Rowe, H.M.2
-
125
-
-
84956706251
-
Pluripotency and the endogenous retrovirus HERVH: conflict or serendipity?
-
Izsvak Z, Wang J, Singh M, Mager DL, Hurst LD (2016) Pluripotency and the endogenous retrovirus HERVH: conflict or serendipity? BioEssays 38: 109–117
-
(2016)
BioEssays
, vol.38
, pp. 109-117
-
-
Izsvak, Z.1
Wang, J.2
Singh, M.3
Mager, D.L.4
Hurst, L.D.5
-
126
-
-
3543077303
-
Retroviral repeat sequences
-
Mager DL, Medstrand P (2005) Retroviral repeat sequences. eLS doi: 10.1038/npg.els.0005062
-
(2005)
eLS
-
-
Mager, D.L.1
Medstrand, P.2
-
127
-
-
10144221975
-
HERV-K: the biologically most active human endogenous retrovirus family
-
Tonjes RR, Lower R, Boller K, Denner J, Hasenmaier B, Kirsch H, Konig H, Korbmacher C, Limbach C, Lugert R et al (1996) HERV-K: the biologically most active human endogenous retrovirus family. J Acquir Immune Defic Syndr Hum Retrovirol 13(Suppl. 1): S261–S267
-
(1996)
J Acquir Immune Defic Syndr Hum Retrovirol
, vol.13
, pp. S261-S267
-
-
Tonjes, R.R.1
Lower, R.2
Boller, K.3
Denner, J.4
Hasenmaier, B.5
Kirsch, H.6
Konig, H.7
Korbmacher, C.8
Limbach, C.9
Lugert, R.10
-
128
-
-
0027244861
-
Evidence that HERV-K is the endogenous retrovirus sequence that codes for the human teratocarcinoma-derived retrovirus HTDV
-
Boller K, Konig H, Sauter M, Mueller-Lantzsch N, Lower R, Lower J, Kurth R (1993) Evidence that HERV-K is the endogenous retrovirus sequence that codes for the human teratocarcinoma-derived retrovirus HTDV. Virology 196: 349–353
-
(1993)
Virology
, vol.196
, pp. 349-353
-
-
Boller, K.1
Konig, H.2
Sauter, M.3
Mueller-Lantzsch, N.4
Lower, R.5
Lower, J.6
Kurth, R.7
-
129
-
-
84886024597
-
Human endogenous retrovirus K (HML-2) RNA and protein expression is a marker for human embryonic and induced pluripotent stem cells
-
Fuchs NV, Loewer S, Daley GQ, Izsvák Z, Lower J, Lower R (2013) Human endogenous retrovirus K (HML-2) RNA and protein expression is a marker for human embryonic and induced pluripotent stem cells. Retrovirology 10: 115
-
(2013)
Retrovirology
, vol.10
, pp. 115
-
-
Fuchs, N.V.1
Loewer, S.2
Daley, G.Q.3
Izsvák, Z.4
Lower, J.5
Lower, R.6
-
130
-
-
84930227422
-
Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
-
Grow EJ, Flynn RA, Chavez SL, Bayless NL, Wossidlo M, Wesche DJ, Martin L, Ware CB, Blish CA, Chang HY et al (2015) Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells. Nature 522: 221–225
-
(2015)
Nature
, vol.522
, pp. 221-225
-
-
Grow, E.J.1
Flynn, R.A.2
Chavez, S.L.3
Bayless, N.L.4
Wossidlo, M.5
Wesche, D.J.6
Martin, L.7
Ware, C.B.8
Blish, C.A.9
Chang, H.Y.10
-
131
-
-
0032491416
-
Embryonic stem cell lines derived from human blastocysts
-
Thomson JA, Itskovitz-Eldor J, Shapiro SS, Waknitz MA, Swiergiel JJ, Marshall VS, Jones JM (1998) Embryonic stem cell lines derived from human blastocysts. Science 282: 1145–1147
-
(1998)
Science
, vol.282
, pp. 1145-1147
-
-
Thomson, J.A.1
Itskovitz-Eldor, J.2
Shapiro, S.S.3
Waknitz, M.A.4
Swiergiel, J.J.5
Marshall, V.S.6
Jones, J.M.7
-
132
-
-
0019826665
-
Establishment in culture of pluripotential cells from mouse embryos
-
Evans MJ, Kaufman MH (1981) Establishment in culture of pluripotential cells from mouse embryos. Nature 292: 154–156
-
(1981)
Nature
, vol.292
, pp. 154-156
-
-
Evans, M.J.1
Kaufman, M.H.2
-
133
-
-
0001007610
-
Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells
-
Martin GR (1981) Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. Proc Natl Acad Sci USA 78: 7634–7638
-
(1981)
Proc Natl Acad Sci USA
, vol.78
, pp. 7634-7638
-
-
Martin, G.R.1
-
134
-
-
84883743509
-
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
-
Yan L, Yang M, Guo H, Yang L, Wu J, Li R, Liu P, Lian Y, Zheng X, Yan J et al (2013) Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells. Nat Struct Mol Biol 20: 1131–1139
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 1131-1139
-
-
Yan, L.1
Yang, M.2
Guo, H.3
Yang, L.4
Wu, J.5
Li, R.6
Liu, P.7
Lian, Y.8
Zheng, X.9
Yan, J.10
-
135
-
-
66049117813
-
Naive and primed pluripotent states
-
Nichols J, Smith A (2009) Naive and primed pluripotent states. Cell Stem Cell 4: 487–492
-
(2009)
Cell Stem Cell
, vol.4
, pp. 487-492
-
-
Nichols, J.1
Smith, A.2
-
136
-
-
84922637623
-
Systematic identification of culture conditions for induction and maintenance of naive human pluripotency
-
Theunissen TW, Powell BE, Wang H, Mitalipova M, Faddah DA, Reddy J, Fan ZP, Maetzel D, Ganz K, Shi L et al (2014) Systematic identification of culture conditions for induction and maintenance of naive human pluripotency. Cell Stem Cell 15: 471–487
-
(2014)
Cell Stem Cell
, vol.15
, pp. 471-487
-
-
Theunissen, T.W.1
Powell, B.E.2
Wang, H.3
Mitalipova, M.4
Faddah, D.A.5
Reddy, J.6
Fan, Z.P.7
Maetzel, D.8
Ganz, K.9
Shi, L.10
-
137
-
-
84896912846
-
Derivation of naive human embryonic stem cells
-
Ware CB, Nelson AM, Mecham B, Hesson J, Zhou W, Jonlin EC, Jimenez-Caliani AJ, Deng X, Cavanaugh C, Cook S et al (2014) Derivation of naive human embryonic stem cells. Proc Natl Acad Sci USA 111: 4484–4489
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 4484-4489
-
-
Ware, C.B.1
Nelson, A.M.2
Mecham, B.3
Hesson, J.4
Zhou, W.5
Jonlin, E.C.6
Jimenez-Caliani, A.J.7
Deng, X.8
Cavanaugh, C.9
Cook, S.10
-
138
-
-
84890079514
-
Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast
-
Chan YS, Goke J, Ng JH, Lu X, Gonzales KA, Tan CP, Tng WQ, Hong ZZ, Lim YS, Ng HH (2013) Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast. Cell Stem Cell 13: 663–675
-
(2013)
Cell Stem Cell
, vol.13
, pp. 663-675
-
-
Chan, Y.S.1
Goke, J.2
Ng, J.H.3
Lu, X.4
Gonzales, K.A.5
Tan, C.P.6
Tng, W.Q.7
Hong, Z.Z.8
Lim, Y.S.9
Ng, H.H.10
-
139
-
-
84890439421
-
Derivation of novel human ground state naive pluripotent stem cells
-
Gafni O, Weinberger L, Mansour AA, Manor YS, Chomsky E, Ben-Yosef D, Kalma Y, Viukov S, Maza I, Zviran A et al (2013) Derivation of novel human ground state naive pluripotent stem cells. Nature 504: 282–286
-
(2013)
Nature
, vol.504
, pp. 282-286
-
-
Gafni, O.1
Weinberger, L.2
Mansour, A.A.3
Manor, Y.S.4
Chomsky, E.5
Ben-Yosef, D.6
Kalma, Y.7
Viukov, S.8
Maza, I.9
Zviran, A.10
-
140
-
-
84908074395
-
Resetting transcription factor control circuitry toward ground-state pluripotency in human
-
Takashima Y, Guo G, Loos R, Nichols J, Ficz G, Krueger F, Oxley D, Santos F, Clarke J, Mansfield W et al (2014) Resetting transcription factor control circuitry toward ground-state pluripotency in human. Cell 158: 1254–1269
-
(2014)
Cell
, vol.158
, pp. 1254-1269
-
-
Takashima, Y.1
Guo, G.2
Loos, R.3
Nichols, J.4
Ficz, G.5
Krueger, F.6
Oxley, D.7
Santos, F.8
Clarke, J.9
Mansfield, W.10
-
141
-
-
84883134780
-
Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
-
Xue Z, Huang K, Cai C, Cai L, Jiang CY, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE et al (2013) Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature 500: 593–597
-
(2013)
Nature
, vol.500
, pp. 593-597
-
-
Xue, Z.1
Huang, K.2
Cai, C.3
Cai, L.4
Jiang, C.Y.5
Feng, Y.6
Liu, Z.7
Zeng, Q.8
Cheng, L.9
Sun, Y.E.10
-
142
-
-
84940990521
-
Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly
-
Ishiuchi T, Enriquez-Gasca R, Mizutani E, Boskovic A, Ziegler-Birling C, Rodriguez-Terrones D, Wakayama T, Vaquerizas JM, Torres-Padilla ME (2015) Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly. Nat Struct Mol Biol 22: 662–671
-
(2015)
Nat Struct Mol Biol
, vol.22
, pp. 662-671
-
-
Ishiuchi, T.1
Enriquez-Gasca, R.2
Mizutani, E.3
Boskovic, A.4
Ziegler-Birling, C.5
Rodriguez-Terrones, D.6
Wakayama, T.7
Vaquerizas, J.M.8
Torres-Padilla, M.E.9
-
143
-
-
84863458292
-
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
-
Macfarlan TS, Gifford WD, Driscoll S, Lettieri K, Rowe HM, Bonanomi D, Firth A, Singer O, Trono D, Pfaff SL (2012) Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature 487: 57–63
-
(2012)
Nature
, vol.487
, pp. 57-63
-
-
Macfarlan, T.S.1
Gifford, W.D.2
Driscoll, S.3
Lettieri, K.4
Rowe, H.M.5
Bonanomi, D.6
Firth, A.7
Singer, O.8
Trono, D.9
Pfaff, S.L.10
-
144
-
-
0037307630
-
MuERV-L is one of the earliest transcribed genes in mouse one-cell embryos
-
Kigami D, Minami N, Takayama H, Imai H (2003) MuERV-L is one of the earliest transcribed genes in mouse one-cell embryos. Biol Reprod 68: 651–654
-
(2003)
Biol Reprod
, vol.68
, pp. 651-654
-
-
Kigami, D.1
Minami, N.2
Takayama, H.3
Imai, H.4
-
145
-
-
0037435038
-
Quantitation of HERV-K env gene expression and splicing in human breast cancer
-
Wang-Johanning F, Frost AR, Jian B, Epp L, Lu DW, Johanning GL (2003) Quantitation of HERV-K env gene expression and splicing in human breast cancer. Oncogene 22: 1528–1535
-
(2003)
Oncogene
, vol.22
, pp. 1528-1535
-
-
Wang-Johanning, F.1
Frost, A.R.2
Jian, B.3
Epp, L.4
Lu, D.W.5
Johanning, G.L.6
-
146
-
-
84956691878
-
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors
-
Hashimoto K, Suzuki AM, Dos Santos A, Desterke C, Collino A, Ghisletti S, Braun E, Bonetti A, Fort A, Qin XY et al (2015) CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors. Genome Res 25: 1812–1824
-
(2015)
Genome Res
, vol.25
, pp. 1812-1824
-
-
Hashimoto, K.1
Suzuki, A.M.2
Dos Santos, A.3
Desterke, C.4
Collino, A.5
Ghisletti, S.6
Braun, E.7
Bonetti, A.8
Fort, A.9
Qin, X.Y.10
-
147
-
-
84875698271
-
Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma
-
Shukla R, Upton KR, Munoz-Lopez M, Gerhardt DJ, Fisher ME, Nguyen T, Brennan PM, Baillie JK, Collino A, Ghisletti S et al (2013) Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma. Cell 153: 101–111
-
(2013)
Cell
, vol.153
, pp. 101-111
-
-
Shukla, R.1
Upton, K.R.2
Munoz-Lopez, M.3
Gerhardt, D.J.4
Fisher, M.E.5
Nguyen, T.6
Brennan, P.M.7
Baillie, J.K.8
Collino, A.9
Ghisletti, S.10
-
148
-
-
84896703728
-
Endogenous retroviruses and the development of cancer
-
Kassiotis G (2014) Endogenous retroviruses and the development of cancer. J Immunol 192: 1343–1349
-
(2014)
J Immunol
, vol.192
, pp. 1343-1349
-
-
Kassiotis, G.1
-
149
-
-
55549145080
-
Endogenous retroviruses and cancer
-
Ruprecht K, Mayer J, Sauter M, Roemer K, Mueller-Lantzsch N (2008) Endogenous retroviruses and cancer. Cell Mol Life Sci 65: 3366–3382
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 3366-3382
-
-
Ruprecht, K.1
Mayer, J.2
Sauter, M.3
Roemer, K.4
Mueller-Lantzsch, N.5
-
150
-
-
2442720089
-
Expression of the human endogenous retrovirus HERV-W family in various human tissues and cancer cells
-
Yi J-M, Kim H-M, Kim H-S (2004) Expression of the human endogenous retrovirus HERV-W family in various human tissues and cancer cells. J Gen Virol 85: 1203–1210
-
(2004)
J Gen Virol
, vol.85
, pp. 1203-1210
-
-
Yi, J.-M.1
Kim, H.-M.2
Kim, H.-S.3
-
151
-
-
77952190003
-
Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
-
Lamprecht B, Walter K, Kreher S, Kumar R, Hummel M, Lenze D, Kochert K, Bouhlel MA, Richter J, Soler E et al (2010) Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma. Nat Med 16: 571–579
-
(2010)
Nat Med
, vol.16
, pp. 571-579
-
-
Lamprecht, B.1
Walter, K.2
Kreher, S.3
Kumar, R.4
Hummel, M.5
Lenze, D.6
Kochert, K.7
Bouhlel, M.A.8
Richter, J.9
Soler, E.10
-
152
-
-
0028988480
-
Identification of a Rev-related protein by analysis of spliced transcripts of the human endogenous retroviruses HTDV/HERV-K
-
Lower R, Tonjes RR, Korbmacher C, Kurth R, Lower J (1995) Identification of a Rev-related protein by analysis of spliced transcripts of the human endogenous retroviruses HTDV/HERV-K. J Virol 69: 141–149
-
(1995)
J Virol
, vol.69
, pp. 141-149
-
-
Lower, R.1
Tonjes, R.R.2
Korbmacher, C.3
Kurth, R.4
Lower, J.5
-
153
-
-
84936847607
-
Human endogenous retrovirus K and cancer: innocent bystander or tumorigenic accomplice?
-
Downey RF, Sullivan FJ, Wang-Johanning F, Ambs S, Giles FJ, Glynn SA (2015) Human endogenous retrovirus K and cancer: innocent bystander or tumorigenic accomplice? Int J Cancer 137: 1249–1257
-
(2015)
Int J Cancer
, vol.137
, pp. 1249-1257
-
-
Downey, R.F.1
Sullivan, F.J.2
Wang-Johanning, F.3
Ambs, S.4
Giles, F.J.5
Glynn, S.A.6
-
154
-
-
84903785714
-
LincRNA-ROR induces epithelial-to-mesenchymal transition and contributes to breast cancer tumorigenesis and metastasis
-
Hou P, Zhao Y, Li Z, Yao R, Ma M, Gao Y, Zhao L, Zhang Y, Huang B, Lu J (2014) LincRNA-ROR induces epithelial-to-mesenchymal transition and contributes to breast cancer tumorigenesis and metastasis. Cell Death Dis 5: e1287
-
(2014)
Cell Death Dis
, vol.5
-
-
Hou, P.1
Zhao, Y.2
Li, Z.3
Yao, R.4
Ma, M.5
Gao, Y.6
Zhao, L.7
Zhang, Y.8
Huang, B.9
Lu, J.10
-
155
-
-
84959345077
-
LincRNA-ROR promotes invasion, metastasis and tumor growth in pancreatic cancer through activating ZEB1 pathway
-
Zhan H-X, Wang Y, Li C, Xu J-W, Zhou B, Zhu J-K, Han H-F, Wang L, Wang Y-S, Hu S-Y (2016) LincRNA-ROR promotes invasion, metastasis and tumor growth in pancreatic cancer through activating ZEB1 pathway. Cancer Lett 374: 261–271
-
(2016)
Cancer Lett
, vol.374
, pp. 261-271
-
-
Zhan, H.-X.1
Wang, Y.2
Li, C.3
Xu, J.-W.4
Zhou, B.5
Zhu, J.-K.6
Han, H.-F.7
Wang, L.8
Wang, Y.-S.9
Hu, S.-Y.10
-
156
-
-
84901398883
-
Extracellular vesicle-mediated transfer of long non-coding RNA ROR modulates chemosensitivity in human hepatocellular cancer
-
Takahashi K, Yan IK, Kogure T, Haga H, Patel T (2014) Extracellular vesicle-mediated transfer of long non-coding RNA ROR modulates chemosensitivity in human hepatocellular cancer. FEBS Open Bio 4: 458–467
-
(2014)
FEBS Open Bio
, vol.4
, pp. 458-467
-
-
Takahashi, K.1
Yan, I.K.2
Kogure, T.3
Haga, H.4
Patel, T.5
-
157
-
-
84940381273
-
Inhibiting DNA methylation causes an interferon response in cancer via dsRNA including endogenous retroviruses
-
Chiappinelli KB, Strissel PL, Desrichard A, Li H, Henke C, Akman B, Hein A, Rote NS, Cope LM, Snyder A et al (2015) Inhibiting DNA methylation causes an interferon response in cancer via dsRNA including endogenous retroviruses. Cell 162: 974–986
-
(2015)
Cell
, vol.162
, pp. 974-986
-
-
Chiappinelli, K.B.1
Strissel, P.L.2
Desrichard, A.3
Li, H.4
Henke, C.5
Akman, B.6
Hein, A.7
Rote, N.S.8
Cope, L.M.9
Snyder, A.10
-
158
-
-
84940403834
-
DNA-demethylating agents target colorectal cancer cells by inducing viral mimicry by endogenous transcripts
-
Roulois D, Loo Yau H, Singhania R, Wang Y, Danesh A, Shen SY, Han H, Liang G, Jones PA, Pugh TJ et al (2015) DNA-demethylating agents target colorectal cancer cells by inducing viral mimicry by endogenous transcripts. Cell 162: 961–973
-
(2015)
Cell
, vol.162
, pp. 961-973
-
-
Roulois, D.1
Loo Yau, H.2
Singhania, R.3
Wang, Y.4
Danesh, A.5
Shen, S.Y.6
Han, H.7
Liang, G.8
Jones, P.A.9
Pugh, T.J.10
-
159
-
-
84920962202
-
Molecular and genetic properties of tumors associated with local immune cytolytic activity
-
Rooney MS, Shukla SA, Wu CJ, Getz G, Hacohen N (2015) Molecular and genetic properties of tumors associated with local immune cytolytic activity. Cell 160: 48–61
-
(2015)
Cell
, vol.160
, pp. 48-61
-
-
Rooney, M.S.1
Shukla, S.A.2
Wu, C.J.3
Getz, G.4
Hacohen, N.5
-
160
-
-
84978643578
-
Immune responses to endogenous retroelements: taking the bad with the good
-
Kassiotis G, Stoye JP (2016) Immune responses to endogenous retroelements: taking the bad with the good. Nat Rev Immunol 16: 207–219
-
(2016)
Nat Rev Immunol
, vol.16
, pp. 207-219
-
-
Kassiotis, G.1
Stoye, J.P.2
-
161
-
-
84970951907
-
Detection of an immunogenic HERV-E envelope with selective expression in clear cell kidney cancer
-
Cherkasova E, Scrivani C, Doh S, Weisman Q, Takahashi Y, Harashima N, Yokoyama H, Srinivasan R, Linehan WM, Lerman MI et al (2016) Detection of an immunogenic HERV-E envelope with selective expression in clear cell kidney cancer. Cancer Res 76: 2177–2185
-
(2016)
Cancer Res
, vol.76
, pp. 2177-2185
-
-
Cherkasova, E.1
Scrivani, C.2
Doh, S.3
Weisman, Q.4
Takahashi, Y.5
Harashima, N.6
Yokoyama, H.7
Srinivasan, R.8
Linehan, W.M.9
Lerman, M.I.10
-
162
-
-
79251493015
-
A human genome structural variation sequencing resource reveals insights into mutational mechanisms
-
Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R, Wilson RK, Eichler EE (2010) A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Cell 143: 837–847
-
(2010)
Cell
, vol.143
, pp. 837-847
-
-
Kidd, J.M.1
Graves, T.2
Newman, T.L.3
Fulton, R.4
Hayden, H.S.5
Malig, M.6
Kallicki, J.7
Kaul, R.8
Wilson, R.K.9
Eichler, E.E.10
-
163
-
-
77953880842
-
LINE-1 retrotransposition activity in human genomes
-
Beck CR, Collier P, Macfarlane C, Malig M, Kidd JM, Eichler EE, Badge RM, Moran JV (2010) LINE-1 retrotransposition activity in human genomes. Cell 141: 1159–1170
-
(2010)
Cell
, vol.141
, pp. 1159-1170
-
-
Beck, C.R.1
Collier, P.2
Macfarlane, C.3
Malig, M.4
Kidd, J.M.5
Eichler, E.E.6
Badge, R.M.7
Moran, J.V.8
-
164
-
-
0037965788
-
Hot L1s account for the bulk of retrotransposition in the human population
-
Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HH Jr (2003) Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci USA 100: 5280–5285
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 5280-5285
-
-
Brouha, B.1
Schustak, J.2
Badge, R.M.3
Lutz-Prigge, S.4
Farley, A.H.5
Moran, J.V.6
Kazazian, H.H.7
-
165
-
-
77955271952
-
LINE-1 retrotransposons: mediators of somatic variation in neuronal genomes?
-
Singer T, McConnell MJ, Marchetto MC, Coufal NG, Gage FH (2010) LINE-1 retrotransposons: mediators of somatic variation in neuronal genomes? Trends Neurosci 33: 345–354
-
(2010)
Trends Neurosci
, vol.33
, pp. 345-354
-
-
Singer, T.1
McConnell, M.J.2
Marchetto, M.C.3
Coufal, N.G.4
Gage, F.H.5
-
166
-
-
77953889472
-
Natural mutagenesis of human genomes by endogenous retrotransposons
-
Iskow RC, McCabe MT, Mills RE, Torene S, Pittard WS, Neuwald AF, Van Meir EG, Vertino PM, Devine SE (2010) Natural mutagenesis of human genomes by endogenous retrotransposons. Cell 141: 1253–1261
-
(2010)
Cell
, vol.141
, pp. 1253-1261
-
-
Iskow, R.C.1
McCabe, M.T.2
Mills, R.E.3
Torene, S.4
Pittard, W.S.5
Neuwald, A.F.6
Van Meir, E.G.7
Vertino, P.M.8
Devine, S.E.9
-
167
-
-
0026503996
-
Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer
-
Miki Y, Nishisho I, Horii A, Miyoshi Y, Utsunomiya J, Kinzler KW, Vogelstein B, Nakamura Y (1992) Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer. Cancer Res 52: 643–645
-
(1992)
Cancer Res
, vol.52
, pp. 643-645
-
-
Miki, Y.1
Nishisho, I.2
Horii, A.3
Miyoshi, Y.4
Utsunomiya, J.5
Kinzler, K.W.6
Vogelstein, B.7
Nakamura, Y.8
-
168
-
-
84865285978
-
Landscape of somatic retrotransposition in human cancers
-
Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, Luquette LJ III, Lohr JG, Harris CC, Ding L, Wilson RK et al (2012) Landscape of somatic retrotransposition in human cancers. Science 337: 967–971
-
(2012)
Science
, vol.337
, pp. 967-971
-
-
Lee, E.1
Iskow, R.2
Yang, L.3
Gokcumen, O.4
Haseley, P.5
Luquette, L.J.6
Lohr, J.G.7
Harris, C.C.8
Ding, L.9
Wilson, R.K.10
-
169
-
-
84905900534
-
Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes
-
Tubio JM, Li Y, Ju YS, Martincorena I, Cooke SL, Tojo M, Gundem G, Pipinikas CP, Zamora J, Raine K et al (2014) Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes. Science 345: 1251343
-
(2014)
Science
, vol.345
, pp. 1251343
-
-
Tubio, J.M.1
Li, Y.2
Ju, Y.S.3
Martincorena, I.4
Cooke, S.L.5
Tojo, M.6
Gundem, G.7
Pipinikas, C.P.8
Zamora, J.9
Raine, K.10
-
170
-
-
9944233064
-
Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis
-
Chalitchagorn K, Shuangshoti S, Hourpai N, Kongruttanachok N, Tangkijvanich P, Thong-ngam D, Voravud N, Sriuranpong V, Mutirangura A (2004) Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis. Oncogene 23: 8841–8846
-
(2004)
Oncogene
, vol.23
, pp. 8841-8846
-
-
Chalitchagorn, K.1
Shuangshoti, S.2
Hourpai, N.3
Kongruttanachok, N.4
Tangkijvanich, P.5
Thong-ngam, D.6
Voravud, N.7
Sriuranpong, V.8
Mutirangura, A.9
-
171
-
-
84941024427
-
Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma
-
Rodić N, Steranka JP, Makohon-Moore A, Moyer A, Shen P, Sharma R, Kohutek ZA, Huang CR, Ahn D, Mita P (2015) Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma. Nat Med 21: 1060–1064
-
(2015)
Nat Med
, vol.21
, pp. 1060-1064
-
-
Rodić, N.1
Steranka, J.P.2
Makohon-Moore, A.3
Moyer, A.4
Shen, P.5
Sharma, R.6
Kohutek, Z.A.7
Huang, C.R.8
Ahn, D.9
Mita, P.10
-
172
-
-
84940979605
-
LINE-1 expression and retrotransposition in Barrett's esophagus and esophageal carcinoma
-
Doucet-O'Hare TT, Rodic N, Sharma R, Darbari I, Abril G, Choi JA, Young Ahn J, Cheng Y, Anders RA, Burns KH et al (2015) LINE-1 expression and retrotransposition in Barrett's esophagus and esophageal carcinoma. Proc Natl Acad Sci USA 112: E4894–E4900
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, pp. E4894-E4900
-
-
Doucet-O'Hare, T.T.1
Rodic, N.2
Sharma, R.3
Darbari, I.4
Abril, G.5
Choi, J.A.6
Young Ahn, J.7
Cheng, Y.8
Anders, R.A.9
Burns, K.H.10
-
173
-
-
84870482898
-
Extensive somatic L1 retrotransposition in colorectal tumors
-
Solyom S, Ewing AD, Rahrmann EP, Doucet T, Nelson HH, Burns MB, Harris RS, Sigmon DF, Casella A, Erlanger B et al (2012) Extensive somatic L1 retrotransposition in colorectal tumors. Genome Res 22: 2328–2338
-
(2012)
Genome Res
, vol.22
, pp. 2328-2338
-
-
Solyom, S.1
Ewing, A.D.2
Rahrmann, E.P.3
Doucet, T.4
Nelson, H.H.5
Burns, M.B.6
Harris, R.S.7
Sigmon, D.F.8
Casella, A.9
Erlanger, B.10
-
174
-
-
84941923663
-
Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution
-
Ewing AD, Gacita A, Wood LD, Ma F, Xing D, Kim MS, Manda SS, Abril G, Pereira G, Makohon-Moore A et al (2015) Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution. Genome Res 25: 1536–1545
-
(2015)
Genome Res
, vol.25
, pp. 1536-1545
-
-
Ewing, A.D.1
Gacita, A.2
Wood, L.D.3
Ma, F.4
Xing, D.5
Kim, M.S.6
Manda, S.S.7
Abril, G.8
Pereira, G.9
Makohon-Moore, A.10
-
175
-
-
84969567909
-
Roles for retrotransposon insertions in human disease
-
Hancks DC, Kazazian HH Jr (2016) Roles for retrotransposon insertions in human disease. Mob DNA 7: 9
-
(2016)
Mob DNA
, vol.7
, pp. 9
-
-
Hancks, D.C.1
Kazazian, H.H.2
-
176
-
-
84973358479
-
A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer
-
Scott EC, Gardner EJ, Masood A, Chuang NT, Vertino PM, Devine SE (2016) A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer. Genome Res 26: 745–755
-
(2016)
Genome Res
, vol.26
, pp. 745-755
-
-
Scott, E.C.1
Gardner, E.J.2
Masood, A.3
Chuang, N.T.4
Vertino, P.M.5
Devine, S.E.6
-
177
-
-
78650197388
-
Human endogenous retroviruses and multiple sclerosis: innocent bystanders or disease determinants?
-
Antony JM, Deslauriers AM, Bhat RK, Ellestad KK, Power C (2011) Human endogenous retroviruses and multiple sclerosis: innocent bystanders or disease determinants? Biochim Biophys Acta 1812: 162–176
-
(2011)
Biochim Biophys Acta
, vol.1812
, pp. 162-176
-
-
Antony, J.M.1
Deslauriers, A.M.2
Bhat, R.K.3
Ellestad, K.K.4
Power, C.5
-
178
-
-
12644252938
-
Molecular identification of a novel retrovirus repeatedly isolated from patients with multiple sclerosis. The Collaborative Research Group on Multiple Sclerosis
-
Perron H, Garson JA, Bedin F, Beseme F, Paranhos-Baccala G, Komurian-Pradel F, Mallet F, Tuke PW, Voisset C, Blond JL et al (1997) Molecular identification of a novel retrovirus repeatedly isolated from patients with multiple sclerosis. The Collaborative Research Group on Multiple Sclerosis. Proc Natl Acad Sci USA 94: 7583–7588
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 7583-7588
-
-
Perron, H.1
Garson, J.A.2
Bedin, F.3
Beseme, F.4
Paranhos-Baccala, G.5
Komurian-Pradel, F.6
Mallet, F.7
Tuke, P.W.8
Voisset, C.9
Blond, J.L.10
-
179
-
-
0025760695
-
Isolation of retrovirus from patients with multiple sclerosis
-
Perron H, Lalande B, Gratacap B, Laurent A, Genoulaz O, Geny C, Mallaret M, Schuller E, Stoebner P, Seigneurin JM (1991) Isolation of retrovirus from patients with multiple sclerosis. Lancet 337: 862–863
-
(1991)
Lancet
, vol.337
, pp. 862-863
-
-
Perron, H.1
Lalande, B.2
Gratacap, B.3
Laurent, A.4
Genoulaz, O.5
Geny, C.6
Mallaret, M.7
Schuller, E.8
Stoebner, P.9
Seigneurin, J.M.10
-
180
-
-
0024814306
-
Leptomeningeal cell line from multiple sclerosis with reverse transcriptase activity and viral particles
-
Perron H, Geny C, Laurent A, Mouriquand C, Pellat J, Perret J, Seigneurin JM (1989) Leptomeningeal cell line from multiple sclerosis with reverse transcriptase activity and viral particles. Res Virol 140: 551–561
-
(1989)
Res Virol
, vol.140
, pp. 551-561
-
-
Perron, H.1
Geny, C.2
Laurent, A.3
Mouriquand, C.4
Pellat, J.5
Perret, J.6
Seigneurin, J.M.7
-
181
-
-
0842308211
-
HERV-W-related RNA detected in plasma from individuals with recent-onset schizophrenia or schizoaffective disorder
-
Karlsson H, Schröder J, Bachmann S, Bottmer C, Yolken R (2004) HERV-W-related RNA detected in plasma from individuals with recent-onset schizophrenia or schizoaffective disorder. Mol Psychiatry 9: 12–13
-
(2004)
Mol Psychiatry
, vol.9
, pp. 12-13
-
-
Karlsson, H.1
Schröder, J.2
Bachmann, S.3
Bottmer, C.4
Yolken, R.5
-
183
-
-
84942938334
-
Human endogenous retrovirus-K contributes to motor neuron disease
-
Li W, Lee MH, Henderson L, Tyagi R, Bachani M, Steiner J, Campanac E, Hoffman DA, von Geldern G, Johnson K et al (2015) Human endogenous retrovirus-K contributes to motor neuron disease. Sci Transl Med 7: 307ra153
-
(2015)
Sci Transl Med
, vol.7
, pp. 307ra153
-
-
Li, W.1
Lee, M.H.2
Henderson, L.3
Tyagi, R.4
Bachani, M.5
Steiner, J.6
Campanac, E.7
Hoffman, D.A.8
von Geldern, G.9
Johnson, K.10
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