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Volumn 1, Issue , 2006, Pages

Transposable element derived DNaseI-hypersensitive sites in the human genome

Author keywords

[No Author keywords available]

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS;

EID: 34248339256     PISSN: None     EISSN: 17456150     Source Type: Journal    
DOI: 10.1186/1745-6150-1-20     Document Type: Review
Times cited : (29)

References (37)
  • 2
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • 10.1016/S0959-437X(99)00031-3 10607616
    • Smit AF Interspersed repeats and other mementos of transposable elements in mammalian genomes Curr Opin Genet Dev 1999 9 6 657-663 10.1016/ S0959-437X(99)00031-3 10607616
    • (1999) Curr Opin Genet Dev , vol.9 , Issue.6 , pp. 657-663
    • Smit, A.F.1
  • 3
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • 10.1038/284601a0 6245369
    • Doolittle WF Sapienza C Selfish genes, the phenotype paradigm and genome evolution Nature 1980 284 5757 601-603 10.1038/284601a0 6245369
    • (1980) Nature , vol.284 , Issue.5757 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 4
    • 0026518145 scopus 로고
    • P-element homologous sequences are tandemly repeated in the genome of Drosophila guanche
    • 525623 1315047 10.1073/pnas.89.9.4018
    • Miller WJ Hagemann S Reiter E Pinsker W P-element homologous sequences are tandemly repeated in the genome of Drosophila guanche Proc Natl Acad Sci U S A 1992 89 9 4018-4022 525623 1315047 10.1073/pnas.89.9.4018
    • (1992) Proc Natl Acad Sci U S A , vol.89 , Issue.9 , pp. 4018-4022
    • Miller, W.J.1    Hagemann, S.2    Reiter, E.3    Pinsker, W.4
  • 5
    • 0035105221 scopus 로고    scopus 로고
    • Perspective: Transposable elements, parasitic DNA, and genome evolution
    • 11263730
    • Kidwell MG Lisch DR Perspective: Transposable elements, parasitic DNA, and genome evolution Evolution Int J Org Evolution 2001 55 1 1-24 11263730
    • (2001) Evolution Int J Org Evolution , vol.55 , Issue.1 , pp. 1-24
    • Kidwell, M.G.1    Lisch, D.R.2
  • 6
    • 0037301560 scopus 로고    scopus 로고
    • Origin of a substantial fraction of human regulatory sequences from transposable elements
    • 10.1016/S0168-9525(02)00006-9 12547512
    • Jordan IK Rogozin IB Glazko GV Koonin EV Origin of a substantial fraction of human regulatory sequences from transposable elements Trends Genet 2003 19 2 68-72 10.1016/S0168-9525(02)00006-9 12547512
    • (2003) Trends Genet , vol.19 , Issue.2 , pp. 68-72
    • Jordan, I.K.1    Rogozin, I.B.2    Glazko, G.V.3    Koonin, E.V.4
  • 7
    • 0141561907 scopus 로고    scopus 로고
    • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
    • 10.1016/j.tig.2003.08.004 14550626
    • van de Lagemaat LN Landry JR Mager DL Medstrand P Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions Trends Genet 2003 19 10 530-536 10.1016/ j.tig.2003.08.004 14550626
    • (2003) Trends Genet , vol.19 , Issue.10 , pp. 530-536
    • van de Lagemaat, L.N.1    Landry, J.R.2    Mager, D.L.3    Medstrand, P.4
  • 8
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • 10.1038/nature02536 15152245
    • Han JS Szak ST Boeke JD Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes Nature 2004 429 6989 268-274 10.1038/nature02536 15152245
    • (2004) Nature , vol.429 , Issue.6989 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 9
    • 0141615769 scopus 로고    scopus 로고
    • Conserved fragments of transposable elements in intergenic regions: Evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes
    • 10.1017/S0016672303006268 14621267
    • Silva JC Shabalina SA Harris DG Spouge JL Kondrashovi AS Conserved fragments of transposable elements in intergenic regions: Evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes Genet Res 2003 82 1 1-18 10.1017/S0016672303006268 14621267
    • (2003) Genet Res , vol.82 , Issue.1 , pp. 1-18
    • Silva, J.C.1    Shabalina, S.A.2    Harris, D.G.3    Spouge, J.L.4    Kondrashovi, A.S.5
  • 10
    • 23844538442 scopus 로고    scopus 로고
    • Transposable elements donate lineage-specific regulatory sequences to host genomes
    • 10.1159/000084965 16093685
    • Marino-Ramirez L Lewis KC Landsman D Jordan IK Transposable elements donate lineage-specific regulatory sequences to host genomes Cytogenet Genome Res 2005 110 1-4 333-341 10.1159/000084965 16093685 10.1159/ 000084965 16093685
    • (2005) Cytogenet Genome Res , vol.110 , Issue.1-4 , pp. 333-341
    • Marino-Ramirez, L.1    Lewis, K.C.2    Landsman, D.3    Jordan, I.K.4
  • 11
    • 0029796901 scopus 로고    scopus 로고
    • DNA sequence insertion and evolutionary variation in gene regulation
    • 38434 8790336 10.1073/pnas.93.18.9374
    • Britten RJ DNA sequence insertion and evolutionary variation in gene regulation Proc Natl Acad Sci U S A 1996 93 18 9374-9377 38434 8790336 10.1073/pnas.93.18.9374
    • (1996) Proc Natl Acad Sci U S A , vol.93 , Issue.18 , pp. 9374-9377
    • Britten, R.J.1
  • 12
    • 0031593249 scopus 로고    scopus 로고
    • Mobile elements inserted in the distant past have taken on important functions
    • 10.1016/S0378-1119(97)00399-5 9461392
    • Britten RJ Mobile elements inserted in the distant past have taken on important functions Gene 1997 205 1-2 177-182 10.1016/ S0378-1119(97)00399-5 9461392
    • (1997) Gene , vol.205 , Issue.1-2 , pp. 177-182
    • Britten, R.J.1
  • 13
    • 0037350508 scopus 로고    scopus 로고
    • Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome
    • 430288 12618366 10.1101/gr.923303
    • Liu G Zhao S Bailey JA Sahinalp SC Alkan C Tuzun E Green ED Eichler EE Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome Genome Res 2003 13 3 358-368 430288 12618366 10.1101/ gr.923303
    • (2003) Genome Res , vol.13 , Issue.3 , pp. 358-368
    • Liu, G.1    Zhao, S.2    Bailey, J.A.3    Sahinalp, S.C.4    Alkan, C.5    Tuzun, E.6    Green, E.D.7    Eichler, E.E.8
  • 15
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia Of DNA Elements) Project
    • Encode Project Consortium 10.1126/science.1105136 15499007
    • Encode Project Consortium The ENCODE (ENCyclopedia Of DNA Elements) Project Science 2004 306 5696 636-640 10.1126/science.1105136 15499007
    • (2004) Science , vol.306 , Issue.5696 , pp. 636-640
  • 16
    • 0023899769 scopus 로고
    • Nuclease hypersensitive sites in chromatin
    • 10.1146/annurev.bi.57.070188.001111 3052270
    • Gross DS Garrard WT Nuclease hypersensitive sites in chromatin Annu Rev Biochem 1988 57 159-197 10.1146/annurev.bi.57.070188.001111 3052270
    • (1988) Annu Rev Biochem , vol.57 , pp. 159-197
    • Gross, D.S.1    Garrard, W.T.2
  • 20
    • 0035850725 scopus 로고    scopus 로고
    • Quantification of DNaseI-sensitivity by real-time PCR: Quantitative analysis of DNaseI-hypersensitivity of the mouse beta-globin LCR
    • 10.1006/jmbi.2001.4969 11601844
    • McArthur M Gerum S Stamatoyannopoulos G Quantification of DNaseI-sensitivity by real-time PCR: Quantitative analysis of DNaseI-hypersensitivity of the mouse beta-globin LCR J Mol Biol 2001 313 1 27-34 10.1006/jmbi.2001.4969 11601844
    • (2001) J Mol Biol , vol.313 , Issue.1 , pp. 27-34
    • McArthur, M.1    Gerum, S.2    Stamatoyannopoulos, G.3
  • 21
    • 0023821768 scopus 로고
    • Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints
    • 10.1016/0022-2836(88)90011-3 3199442
    • Tagle DA Koop BF Goodman M Slightom JL Hess DL Jones RT Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints J Mol Biol 1988 203 2 439-455 10.1016/0022-2836(88)90011-3 3199442
    • (1988) J Mol Biol , vol.203 , Issue.2 , pp. 439-455
    • Tagle, D.A.1    Koop, B.F.2    Goodman, M.3    Slightom, J.L.4    Hess, D.L.5    Jones, R.T.6
  • 22
    • 0042561796 scopus 로고    scopus 로고
    • Of mice and men: Phylogenetic footprinting aids the discovery of regulatory elements
    • 193683 12814519 10.1186/1475-4924-2-11
    • Zhang Z Gerstein M Of mice and men: Phylogenetic footprinting aids the discovery of regulatory elements J Biol 2003 2 2 11 193683 12814519 10.1186/1475-4924-2-11
    • (2003) J Biol , vol.2 , Issue.2 , pp. 11
    • Zhang, Z.1    Gerstein, M.2
  • 27
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • 10.1016/S0168-9525(00)02093-X 10973072
    • Jurka J Repbase update: A database and an electronic journal of repetitive elements Trends Genet 2000 16 9 418-420 10.1016/ S0168-9525(00)02093-X 10973072
    • (2000) Trends Genet , vol.16 , Issue.9 , pp. 418-420
    • Jurka, J.1
  • 29
    • 0036169031 scopus 로고    scopus 로고
    • Genesis: Cluster analysis of microarray data
    • 10.1093/bioinformatics/18.1.207 11836235
    • Sturn A Quackenbush J Trajanoski Z Genesis: Cluster analysis of microarray data Bioinformatics 2002 18 1 207-208 10.1093/bioinformatics/ 18.1.207 11836235
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 207-208
    • Sturn, A.1    Quackenbush, J.2    Trajanoski, Z.3
  • 30
    • 13444251367 scopus 로고    scopus 로고
    • Evolutionary significance of gene expression divergence
    • 10.1016/j.gene.2004.11.034 15716085
    • Jordan IK Marino-Ramirez L Koonin EV Evolutionary significance of gene expression divergence Gene 2005 345 1 119-126 10.1016/j.gene.2004.11.034 15716085
    • (2005) Gene , vol.345 , Issue.1 , pp. 119-126
    • Jordan, I.K.1    Marino-Ramirez, L.2    Koonin, E.V.3
  • 34
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
    • 10.1093/bioinformatics/bth088 14962934
    • Beissbarth T Speed TP GOstat: Find statistically overrepresented Gene Ontologies within a group of genes Bioinformatics 2004 20 9 1464-1465 10.1093/bioinformatics/bth088 14962934
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 35
    • 10044281928 scopus 로고    scopus 로고
    • GeneInfoViz: Constructing and visualizing gene relation networks
    • In 15724283
    • Zhou M Cui Y GeneInfoViz: Constructing and visualizing gene relation networks In Silico Biol 2004 4 3 323-333 15724283
    • (2004) Silico Biol , vol.4 , Issue.3 , pp. 323-333
    • Zhou, M.1    Cui, Y.2
  • 36
    • 0037314097 scopus 로고    scopus 로고
    • Matrix2png: A utility for visualizing matrix data
    • 10.1093/bioinformatics/19.2.295 12538257
    • Pavlidis P Noble WS Matrix2png: A utility for visualizing matrix data Bioinformatics 2003 19 2 295-296 10.1093/bioinformatics/19.2.295 12538257
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 295-296
    • Pavlidis, P.1    Noble, W.S.2
  • 37
    • 0004036449 scopus 로고    scopus 로고
    • Molecular Evolution and Phylogenetics
    • New York, Oxford University Press
    • Nei M Kumar S Molecular Evolution and Phylogenetics New York, Oxford University Press 2000 p20
    • (2000) , pp. 20
    • Nei, M.1    Kumar, S.2


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